Title: Distance Measure Based Judgment and Learning
Description: Implements various decision support tools related to the Econometrics & Technometrics.
Subroutines include correlation reliability test, Mahalanobis distance measure for outlier detection, combinatorial search (all possible subset regression), non-parametric efficiency analysis measures: DDF (directional distance function), DEA (data envelopment analysis), HDF (hyperbolic distance function), SBM (slack-based measure), and SF (shortage function), benchmarking, Malmquist productivity analysis, risk analysis, technology adoption model, new product target setting, etc.
Author: Dong-Joon Lim, Ph.D. <technometrics.org>
Maintainer: Dong-Joon Lim <tgno3.com@gmail.com>
Diff between DJL versions 3.5 dated 2020-09-12 and 3.6 dated 2020-09-15
DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++------------- NEWS | 9 +++++++++ R/dm.ddf.R | 2 +- R/dm.hdf.R | 2 +- R/dm.sf.R | 2 +- R/map.soa.ddf.R | 1 + R/map.soa.hdf.R | 1 + R/map.soa.sf.R | 1 + R/roc.hdf.R | 2 +- R/roc.malmquist.R | 10 +++++++++- R/roc.sf.R | 2 +- R/target.arrival.hdf.R | 2 +- R/target.arrival.sf.R | 2 +- 14 files changed, 45 insertions(+), 25 deletions(-)
Title: 3D Interactive Globes
Description: Displays geospatial data on an interactive 3D globe in the web browser.
Author: Richard Barnes [aut, cre]
Maintainer: Richard Barnes <rijard.barnes@gmail.com>
Diff between webglobe versions 1.0.2 dated 2017-06-02 and 1.0.3 dated 2020-09-15
DESCRIPTION | 16 +- MD5 | 14 +- NEWS | 6 + R/webglobe.R | 2 build/vignette.rds |binary inst/doc/webglobe.Rmd | 4 inst/doc/webglobe.html | 286 +++++++++++++++++++++++++++++++++++-------------- vignettes/webglobe.Rmd | 4 8 files changed, 234 insertions(+), 98 deletions(-)
Title: Tools to Work with Survey Data
Description: Data obtained from surveys contains information not only about the
survey responses, but also the survey metadata, e.g. the original survey
questions and the answer options. The 'surveydata' package makes it easy to
keep track of this metadata, and to easily extract columns with
specific questions.
Author: Andrie de Vries [aut, cre, cph],
Evan Odell [ctb]
Maintainer: Andrie de Vries <apdevries@gmail.com>
Diff between surveydata versions 0.2.5 dated 2020-04-21 and 0.2.6 dated 2020-09-15
DESCRIPTION | 10 ++-- MD5 | 52 ++++++++++----------- NAMESPACE | 1 NEWS | 11 ++++ R/dplyr_verbs.R | 10 +++- R/surveydata.R | 8 ++- build/vignette.rds |binary inst/doc/surveydata.html | 85 ++++++++++++++++++----------------- inst/examples/example-dplyr-verbs.R | 2 man/dplyr-surveydata.Rd | 7 ++ man/surveydata-package.Rd | 4 - tests/testthat/notest-9-gss.R | 2 tests/testthat/test-01-essentials.R | 16 +++--- tests/testthat/test-01-surveydata.R | 13 +++-- tests/testthat/test-02-whichq.R | 2 tests/testthat/test-03-extract.R | 16 +++--- tests/testthat/test-03-replace.R | 10 ++-- tests/testthat/test-03-strings.R | 34 +++++++------- tests/testthat/test-04-merge.R | 8 +-- tests/testthat/test-05-questions.R | 2 tests/testthat/test-06-encoding.R | 2 tests/testthat/test-08-tools.R | 2 tests/testthat/test-09-dplyr-verbs.R | 24 +++++---- tests/testthat/test-10-cleandata.R | 7 +- tests/testthat/test-11-encoding.R | 2 tests/testthat/test-12-plots.R | 8 +-- tests/testthat/test-13-opentext.R | 8 +-- 27 files changed, 193 insertions(+), 153 deletions(-)
Title: State Space Modelling in 'R'
Description: A tool that makes estimating models in state space form
a breeze. See "Time Series Analysis by State Space Methods" by
Durbin and Koopman (2012, ISBN: 978-0-19-964117-8) for details
about the algorithms implemented.
Author: Dylan Beijers [aut, cre]
Maintainer: Dylan Beijers <dylanbeijers@gmail.com>
Diff between statespacer versions 0.2.1 dated 2020-07-15 and 0.3.0 dated 2020-09-15
statespacer-0.2.1/statespacer/R/KalmanFiltering.R |only statespacer-0.3.0/statespacer/DESCRIPTION | 8 statespacer-0.3.0/statespacer/MD5 | 40 statespacer-0.3.0/statespacer/NEWS.md | 18 statespacer-0.3.0/statespacer/R/Components-Regressors.R | 4 statespacer-0.3.0/statespacer/R/GetSysMat.R | 13 statespacer-0.3.0/statespacer/R/RcppExports.R | 20 statespacer-0.3.0/statespacer/R/StateSpaceEval.R | 775 +++------------- statespacer-0.3.0/statespacer/R/predict.R | 2 statespacer-0.3.0/statespacer/R/statespacer.R | 13 statespacer-0.3.0/statespacer/build/partial.rdb |binary statespacer-0.3.0/statespacer/inst/doc/boxjenkins.html | 12 statespacer-0.3.0/statespacer/inst/doc/dictionary.Rmd | 17 statespacer-0.3.0/statespacer/inst/doc/dictionary.html | 15 statespacer-0.3.0/statespacer/inst/doc/intro.html | 6 statespacer-0.3.0/statespacer/inst/doc/seatbelt.html | 30 statespacer-0.3.0/statespacer/inst/doc/selfspec.html | 6 statespacer-0.3.0/statespacer/man/statespacer.Rd | 6 statespacer-0.3.0/statespacer/src/KalmanC.cpp |only statespacer-0.3.0/statespacer/src/LogLikC.cpp | 4 statespacer-0.3.0/statespacer/src/RcppExports.cpp | 21 statespacer-0.3.0/statespacer/vignettes/dictionary.Rmd | 17 22 files changed, 324 insertions(+), 703 deletions(-)
Title: Toolkit for Item Factor Analysis with 'OpenMx'
Description: Tools, tutorials, and demos of Item Factor Analysis using 'OpenMx'.
This software is described in Pritikin & Falk (2020) <doi:10.1177/0146621620929431>.
Author: Joshua N. Pritikin [cre, aut]
Maintainer: Joshua N. Pritikin <jpritikin@pobox.com>
Diff between ifaTools versions 0.21 dated 2020-02-04 and 0.22 dated 2020-09-15
DESCRIPTION | 11 ++++++----- MD5 | 9 +++++---- build/vignette.rds |binary inst/CITATION |only inst/doc/pritikin-schmidt.pdf |binary tools/rox | 2 +- 6 files changed, 12 insertions(+), 10 deletions(-)
Title: Tools for Highfrequency Data Analysis
Description: Provide functionality to manage, clean and match highfrequency
trades and quotes data, calculate various liquidity measures, estimate and
forecast volatility, detect price jumps and investigate microstructure noise and intraday
periodicity.
Author: Kris Boudt [aut, cre] (<https://orcid.org/0000-0002-1000-5142>),
Jonathan Cornelissen [aut],
Scott Payseur [aut],
Giang Nguyen [ctb],
Onno Kleen [aut] (<https://orcid.org/0000-0003-4731-4640>),
Emil Sjoerup [aut]
Maintainer: Kris Boudt
<kris.boudt@ugent.be>
Diff between highfrequency versions 0.6.5 dated 2020-04-15 and 0.7.0 dated 2020-09-15
highfrequency-0.6.5/highfrequency/data/datalist |only highfrequency-0.6.5/highfrequency/data/realized_library.rda |only highfrequency-0.6.5/highfrequency/data/sample_5minprices.rda |only highfrequency-0.6.5/highfrequency/data/sample_5minprices_jumps.rda |only highfrequency-0.6.5/highfrequency/data/sample_qdata.rda |only highfrequency-0.6.5/highfrequency/data/sample_qdata_microseconds.rda |only highfrequency-0.6.5/highfrequency/data/sample_qdataraw.rda |only highfrequency-0.6.5/highfrequency/data/sample_qdataraw_microseconds.rda |only highfrequency-0.6.5/highfrequency/data/sample_real5minprices.rda |only highfrequency-0.6.5/highfrequency/data/sample_returns_5min.rda |only highfrequency-0.6.5/highfrequency/data/sample_tdata.rda |only highfrequency-0.6.5/highfrequency/data/sample_tdata_microseconds.rda |only highfrequency-0.6.5/highfrequency/data/sample_tdataraw.rda |only highfrequency-0.6.5/highfrequency/data/sample_tdataraw_microseconds.rda |only highfrequency-0.6.5/highfrequency/man/AJjumptest.Rd |only highfrequency-0.6.5/highfrequency/man/BNSjumptest.Rd |only highfrequency-0.6.5/highfrequency/man/JOjumptest.Rd |only highfrequency-0.6.5/highfrequency/man/aggregatets.Rd |only highfrequency-0.6.5/highfrequency/man/harModel.Rd |only highfrequency-0.6.5/highfrequency/man/heavyModel.Rd |only highfrequency-0.6.5/highfrequency/man/realized_library.Rd |only highfrequency-0.6.5/highfrequency/man/sample_5minprices.Rd |only highfrequency-0.6.5/highfrequency/man/sample_5minprices_jumps.Rd |only highfrequency-0.6.5/highfrequency/man/sample_qdata.Rd |only highfrequency-0.6.5/highfrequency/man/sample_qdata_microseconds.Rd |only highfrequency-0.6.5/highfrequency/man/sample_qdataraw.Rd |only highfrequency-0.6.5/highfrequency/man/sample_qdataraw_microseconds.Rd |only highfrequency-0.6.5/highfrequency/man/sample_real5minprices.Rd |only highfrequency-0.6.5/highfrequency/man/sample_returns_5min.Rd |only highfrequency-0.6.5/highfrequency/man/sample_tdata.Rd |only highfrequency-0.6.5/highfrequency/man/sample_tdata_microseconds.Rd |only highfrequency-0.6.5/highfrequency/man/sample_tdataraw.Rd |only highfrequency-0.6.5/highfrequency/man/sample_tdataraw_microseconds.Rd |only highfrequency-0.6.5/highfrequency/man/spotvol.Rd |only highfrequency-0.7.0/highfrequency/DESCRIPTION | 20 highfrequency-0.7.0/highfrequency/MD5 | 264 - highfrequency-0.7.0/highfrequency/NAMESPACE | 59 highfrequency-0.7.0/highfrequency/NEWS.md | 24 highfrequency-0.7.0/highfrequency/R/RcppExports.R | 50 highfrequency-0.7.0/highfrequency/R/data.R | 82 highfrequency-0.7.0/highfrequency/R/data_handling.R | 1833 ++++++--- highfrequency-0.7.0/highfrequency/R/getDataFromAlphaVantage.R |only highfrequency-0.7.0/highfrequency/R/har_model.R | 239 - highfrequency-0.7.0/highfrequency/R/heavy_model.R | 70 highfrequency-0.7.0/highfrequency/R/highfrequency.R | 6 highfrequency-0.7.0/highfrequency/R/internal.R | 38 highfrequency-0.7.0/highfrequency/R/internal_data_handling.R | 125 highfrequency-0.7.0/highfrequency/R/internal_jump_tests.R | 72 highfrequency-0.7.0/highfrequency/R/internal_preavering_estimators.R | 33 highfrequency-0.7.0/highfrequency/R/internal_realized_measures.R | 293 - highfrequency-0.7.0/highfrequency/R/internal_spot_vol_and_drift.R | 283 + highfrequency-0.7.0/highfrequency/R/jump_tests.R | 782 +++- highfrequency-0.7.0/highfrequency/R/leadLag.R |only highfrequency-0.7.0/highfrequency/R/liquidity_measures.R | 163 highfrequency-0.7.0/highfrequency/R/realized_measures.R | 1863 ++++++---- highfrequency-0.7.0/highfrequency/R/realized_measures_inference.R | 60 highfrequency-0.7.0/highfrequency/R/spot_vol_and_drift.R | 207 - highfrequency-0.7.0/highfrequency/build/vignette.rds |binary highfrequency-0.7.0/highfrequency/data/realizedLibrary.rda |only highfrequency-0.7.0/highfrequency/data/sample5MinPrices.rda |only highfrequency-0.7.0/highfrequency/data/sample5MinPricesJumps.rda |only highfrequency-0.7.0/highfrequency/data/sampleQData.rda |only highfrequency-0.7.0/highfrequency/data/sampleQDataMicroseconds.rda |only highfrequency-0.7.0/highfrequency/data/sampleQDataRaw.rda |only highfrequency-0.7.0/highfrequency/data/sampleQDataRawMicroseconds.rda |only highfrequency-0.7.0/highfrequency/data/sampleReal5MinPrices.rda |only highfrequency-0.7.0/highfrequency/data/sampleReturns5Min.rda |only highfrequency-0.7.0/highfrequency/data/sampleTData.rda |only highfrequency-0.7.0/highfrequency/data/sampleTDataMicroseconds.rda |only highfrequency-0.7.0/highfrequency/data/sampleTDataRaw.rda |only highfrequency-0.7.0/highfrequency/data/sampleTDataRawMicroseconds.rda |only highfrequency-0.7.0/highfrequency/inst/doc/data_handing.R | 22 highfrequency-0.7.0/highfrequency/inst/doc/data_handing.Rmd | 24 highfrequency-0.7.0/highfrequency/inst/doc/data_handing.html | 227 - highfrequency-0.7.0/highfrequency/man/AJjumpTest.Rd |only highfrequency-0.7.0/highfrequency/man/BNSjumpTest.Rd |only highfrequency-0.7.0/highfrequency/man/HARmodel.Rd |only highfrequency-0.7.0/highfrequency/man/HEAVYmodel.Rd |only highfrequency-0.7.0/highfrequency/man/JOjumpTest.Rd |only highfrequency-0.7.0/highfrequency/man/MRC.Rd | 18 highfrequency-0.7.0/highfrequency/man/RTQ.Rd | 4 highfrequency-0.7.0/highfrequency/man/RV.Rd | 4 highfrequency-0.7.0/highfrequency/man/ReMeDI.Rd |only highfrequency-0.7.0/highfrequency/man/SP500RM.Rd | 4 highfrequency-0.7.0/highfrequency/man/TSCov_bi.Rd | 58 highfrequency-0.7.0/highfrequency/man/aggregatePrice.Rd | 32 highfrequency-0.7.0/highfrequency/man/aggregateQuotes.Rd | 18 highfrequency-0.7.0/highfrequency/man/aggregateTS.Rd |only highfrequency-0.7.0/highfrequency/man/aggregateTrades.Rd | 16 highfrequency-0.7.0/highfrequency/man/autoSelectExchangeQuotes.Rd | 6 highfrequency-0.7.0/highfrequency/man/autoSelectExchangeTrades.Rd | 6 highfrequency-0.7.0/highfrequency/man/businessTimeAggregation.Rd |only highfrequency-0.7.0/highfrequency/man/exchangeHoursOnly.Rd | 12 highfrequency-0.7.0/highfrequency/man/getAlphaVantageData.Rd |only highfrequency-0.7.0/highfrequency/man/getLiquidityMeasures.Rd | 10 highfrequency-0.7.0/highfrequency/man/getTradeDirection.Rd | 10 highfrequency-0.7.0/highfrequency/man/hasQty.Rd | 2 highfrequency-0.7.0/highfrequency/man/highfrequency-package.Rd | 13 highfrequency-0.7.0/highfrequency/man/intradayJumpTest.Rd |only highfrequency-0.7.0/highfrequency/man/ivInference.Rd | 16 highfrequency-0.7.0/highfrequency/man/knChooseReMeDI.Rd |only highfrequency-0.7.0/highfrequency/man/leadLag.Rd |only highfrequency-0.7.0/highfrequency/man/listCholCovEstimators.Rd |only highfrequency-0.7.0/highfrequency/man/lltc.Rd | 4 highfrequency-0.7.0/highfrequency/man/matchTradesQuotes.Rd | 12 highfrequency-0.7.0/highfrequency/man/medRQ.Rd | 12 highfrequency-0.7.0/highfrequency/man/medRV.Rd | 16 highfrequency-0.7.0/highfrequency/man/mergeQuotesSameTimestamp.Rd | 4 highfrequency-0.7.0/highfrequency/man/mergeTradesSameTimestamp.Rd | 7 highfrequency-0.7.0/highfrequency/man/minRQ.Rd | 12 highfrequency-0.7.0/highfrequency/man/minRV.Rd | 16 highfrequency-0.7.0/highfrequency/man/noZeroPrices.Rd | 4 highfrequency-0.7.0/highfrequency/man/noZeroQuotes.Rd | 4 highfrequency-0.7.0/highfrequency/man/quotesCleanup.Rd | 47 highfrequency-0.7.0/highfrequency/man/rAVGCov.Rd | 27 highfrequency-0.7.0/highfrequency/man/rBPCov.Rd | 20 highfrequency-0.7.0/highfrequency/man/rBeta.Rd | 16 highfrequency-0.7.0/highfrequency/man/rCholCov.Rd |only highfrequency-0.7.0/highfrequency/man/rCov.Rd | 24 highfrequency-0.7.0/highfrequency/man/rHYCov.Rd | 16 highfrequency-0.7.0/highfrequency/man/rKernelCov.Rd | 34 highfrequency-0.7.0/highfrequency/man/rKurt.Rd | 14 highfrequency-0.7.0/highfrequency/man/rMPV.Rd | 18 highfrequency-0.7.0/highfrequency/man/rOWCov.Rd | 26 highfrequency-0.7.0/highfrequency/man/rQPVar.Rd | 14 highfrequency-0.7.0/highfrequency/man/rQuar.Rd | 14 highfrequency-0.7.0/highfrequency/man/rRTSCov.Rd | 12 highfrequency-0.7.0/highfrequency/man/rSV.Rd | 14 highfrequency-0.7.0/highfrequency/man/rSemiCov.Rd |only highfrequency-0.7.0/highfrequency/man/rSkew.Rd | 14 highfrequency-0.7.0/highfrequency/man/rTPVar.Rd | 14 highfrequency-0.7.0/highfrequency/man/rTSCov.Rd | 10 highfrequency-0.7.0/highfrequency/man/rThresholdCov.Rd | 16 highfrequency-0.7.0/highfrequency/man/rankJumpTest.Rd |only highfrequency-0.7.0/highfrequency/man/realizedLibrary.Rd |only highfrequency-0.7.0/highfrequency/man/refreshTime.Rd | 14 highfrequency-0.7.0/highfrequency/man/rmLargeSpread.Rd | 4 highfrequency-0.7.0/highfrequency/man/rmNegativeSpread.Rd | 6 highfrequency-0.7.0/highfrequency/man/rmOutliersQuotes.Rd | 4 highfrequency-0.7.0/highfrequency/man/rmTradeOutliers.Rd | 6 highfrequency-0.7.0/highfrequency/man/rmTradeOutliersUsingQuotes.Rd | 16 highfrequency-0.7.0/highfrequency/man/salesCondition.Rd | 13 highfrequency-0.7.0/highfrequency/man/sample5MinPrices.Rd |only highfrequency-0.7.0/highfrequency/man/sample5MinPricesJumps.Rd |only highfrequency-0.7.0/highfrequency/man/sampleQData.Rd |only highfrequency-0.7.0/highfrequency/man/sampleQDataMicroseconds.Rd |only highfrequency-0.7.0/highfrequency/man/sampleQDataRaw.Rd |only highfrequency-0.7.0/highfrequency/man/sampleQDataRawMicroseconds.Rd |only highfrequency-0.7.0/highfrequency/man/sampleReal5MinPrices.Rd |only highfrequency-0.7.0/highfrequency/man/sampleReturns5Min.Rd |only highfrequency-0.7.0/highfrequency/man/sampleTData.Rd |only highfrequency-0.7.0/highfrequency/man/sampleTDataMicroseconds.Rd |only highfrequency-0.7.0/highfrequency/man/sampleTDataRaw.Rd |only highfrequency-0.7.0/highfrequency/man/sampleTDataRawMicroseconds.Rd |only highfrequency-0.7.0/highfrequency/man/sbux.Rd | 4 highfrequency-0.7.0/highfrequency/man/spotDrift.Rd | 22 highfrequency-0.7.0/highfrequency/man/spotVol.Rd |only highfrequency-0.7.0/highfrequency/man/tradesCleanup.Rd | 48 highfrequency-0.7.0/highfrequency/man/tradesCleanupUsingQuotes.Rd | 53 highfrequency-0.7.0/highfrequency/src/Makevars |only highfrequency-0.7.0/highfrequency/src/Makevars.win |only highfrequency-0.7.0/highfrequency/src/RcppExports.cpp | 148 highfrequency-0.7.0/highfrequency/src/business_time_sampling.cpp |only highfrequency-0.7.0/highfrequency/src/heavy_model.cpp | 6 highfrequency-0.7.0/highfrequency/src/internals.cpp |only highfrequency-0.7.0/highfrequency/src/internals.h |only highfrequency-0.7.0/highfrequency/src/leadLag.cpp |only highfrequency-0.7.0/highfrequency/tests/testthat/Rplots.pdf |binary highfrequency-0.7.0/highfrequency/tests/testthat/tests_data_handling.R | 433 +- highfrequency-0.7.0/highfrequency/tests/testthat/tests_jump_tests.R | 96 highfrequency-0.7.0/highfrequency/tests/testthat/tests_leadLag.R |only highfrequency-0.7.0/highfrequency/tests/testthat/tests_liquidity_measures.R | 50 highfrequency-0.7.0/highfrequency/tests/testthat/tests_models.R | 112 highfrequency-0.7.0/highfrequency/tests/testthat/tests_realized_measures.R | 469 +- highfrequency-0.7.0/highfrequency/tests/testthat/tests_spotvol_and_drift.R | 86 highfrequency-0.7.0/highfrequency/vignettes/data_handing.Rmd | 24 176 files changed, 6146 insertions(+), 2977 deletions(-)
Title: Dirichlet Process Weibull Mixture Model for Survival Data
Description: Use Dirichlet process Weibull mixture model and dependent Dirichlet process Weibull mixture model for survival data with and without competing risks. Dirichlet process Weibull mixture model is used for data without covariates and dependent Dirichlet process model is used for regression data. The package is designed to handle exact/right-censored/ interval-censored observations without competing risks and exact/right-censored observations for data with competing risks. Inside each cluster of Dirichlet process, we assume a multiplicative effect of covariates as in Cox model and Fine and Gray model. For wrapper of the DPdensity function from the R package DPpackage (already archived by CRAN) that uses the Low Information Omnibus prior, please check (<https://github.com/mjmartens/DPdensity-wrapper-with-LIO-prior>).
Author: Yushu Shi
Maintainer: Yushu Shi <shiyushu2006@gmail.com>
Diff between DPWeibull versions 1.6 dated 2020-09-13 and 1.7 dated 2020-09-15
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- data/deterioration.rda |binary data/survmedian.rda |binary src/compreg.cpp | 5 ++++- src/reg.cpp | 4 +++- 6 files changed, 16 insertions(+), 11 deletions(-)
Title: Reimplementations of Functions Introduced Since R-3.0.0
Description: Functions introduced or changed since R v3.0.0 are re-implemented in this
package. The backports are conditionally exported in order to let R resolve
the function name to either the implemented backport, or the respective base
version, if available. Package developers can make use of new functions or
arguments by selectively importing specific backports to
support older installations.
Author: Michel Lang [cre, aut] (<https://orcid.org/0000-0001-9754-0393>),
R Core Team [aut]
Maintainer: Michel Lang <michellang@gmail.com>
Diff between backports versions 1.1.9 dated 2020-08-24 and 1.1.10 dated 2020-09-15
DESCRIPTION | 6 +++--- MD5 | 11 +++++++---- NAMESPACE | 2 ++ NEWS.md | 3 +++ R/import.R | 2 +- R/suppressWarnings.R |only man/suppressWarnings.Rd |only tests/test_suppressWarnings.R |only 8 files changed, 16 insertions(+), 8 deletions(-)
Title: Queries and Extracts Images from Extensible Neuroimaging Archive
Toolkit Public/Private Datasets
Description: Allows communication with Extensible Neuroimaging Archive Toolkit <https://www.xnat.org>.
'Rxnat' is using the 'XNAT' REST API to perform data queries and download images.
Author: Adi Gherman [aut, cre]
Maintainer: Adi Gherman <adig@jhu.edu>
Diff between Rxnat versions 1.0.12 dated 2020-07-28 and 1.0.14 dated 2020-09-15
DESCRIPTION | 10 - MD5 | 14 +- NAMESPACE | 1 R/xnat_api.R | 247 ++++++++++++++++++++++++------------------ README.md | 2 build/vignette.rds |binary inst/doc/rxnat.html | 253 ++++++++++++++++++++++++++++++++++---------- man/query_scan_resources.Rd | 2 8 files changed, 355 insertions(+), 174 deletions(-)
Title: Modeling Workflows
Description: Managing both a 'parsnip' model and a preprocessor, such as a
model formula or recipe from 'recipes', can often be challenging. The goal
of 'workflows' is to streamline this process by bundling the model alongside
the preprocessor, all within the same object.
Author: Davis Vaughan [aut, cre],
RStudio [cph]
Maintainer: Davis Vaughan <davis@rstudio.com>
Diff between workflows versions 0.1.3 dated 2020-08-10 and 0.2.0 dated 2020-09-15
DESCRIPTION | 9 ++-- MD5 | 38 ++++++++++--------- NAMESPACE | 3 + NEWS.md | 15 +++++++ R/fit.R | 25 +++++++++++- R/pre-action-formula.R | 7 ++- R/pre-action-recipe.R | 7 ++- R/pre-action-variables.R |only R/pull.R | 18 +++++++-- R/utils.R | 22 +++++++++++ R/workflow.R | 38 ++++++++++++++++++- man/add_formula.Rd | 4 +- man/add_recipe.Rd | 4 +- man/add_variables.Rd |only man/workflow-extractors.Rd | 9 +++- man/workflow.Rd | 8 ++++ tests/testthat/out/test-print-workflow-variables.txt |only tests/testthat/test-fit.R | 2 - tests/testthat/test-pre-action-formula.R | 7 +++ tests/testthat/test-pre-action-recipe.R | 9 ++++ tests/testthat/test-pre-action-variables.R |only tests/testthat/test-printing.R | 7 +++ 22 files changed, 191 insertions(+), 41 deletions(-)
Title: Create a Mini Version of CRAN Containing Only Selected Packages
Description: Makes it possible to create an internally consistent
repository consisting of selected packages from CRAN-like repositories.
The user specifies a set of desired packages, and 'miniCRAN' recursively
reads the dependency tree for these packages, then downloads only this
subset. The user can then install packages from this repository directly,
rather than from CRAN. This is useful in production settings, e.g. server
behind a firewall, or remote locations with slow (or zero) Internet access.
Author: Andrie de Vries [aut, cre, cph],
Alex Chubaty [ctb],
Microsoft Corporation [cph]
Maintainer: Andrie de Vries <apdevries@gmail.com>
Diff between miniCRAN versions 0.2.13 dated 2020-07-13 and 0.2.14 dated 2020-09-15
DESCRIPTION | 7 - MD5 | 31 +++-- NEWS | 16 +-- R/updatePackages.R | 39 +++---- inst/doc/miniCRAN-dependency-graph.html | 42 ++----- inst/doc/miniCRAN-introduction.html | 128 ++++++++++-------------- inst/doc/miniCRAN-non-CRAN-repos.html | 76 +++++--------- man/figures/logo.svg |only man/figures/miniCRAN-logo.png |binary tests/testthat/test-1-github-functions.R | 2 tests/testthat/test-1-pkgDep.R | 8 - tests/testthat/test-3-makeRepo.R | 2 tests/testthat/test-4-makeRepo-from-localCRAN.R | 4 tests/testthat/test-5-ask-for-confirmation.R | 6 - tests/testthat/test-5-updateRepo.R | 8 - tests/testthat/test-6-getCranDescription.R | 2 tests/testthat/test-7-addGithubPackage.R | 4 17 files changed, 166 insertions(+), 209 deletions(-)
Title: Converting Transport Data from GTFS Format to GPS-Like Records
Description: Convert general transit feed specification (GTFS) data to global positioning system (GPS) records in 'data.table' format. It also has some functions to subset GTFS data in time and space and to convert both representations to simple feature format.
Author: Rafael H. M. Pereira [aut] (<https://orcid.org/0000-0003-2125-7465>),
Pedro R. Andrade [aut, cre] (<https://orcid.org/0000-0001-8675-4046>),
Joao Bazzo [aut] (<https://orcid.org/0000-0003-4536-5006>),
Marcin Stepniak [ctb],
Ipea - Institue for Applied Economic Research [cph, fnd]
Maintainer: Pedro R. Andrade <pedro.andrade@inpe.br>
Diff between gtfs2gps versions 1.2-1 dated 2020-06-12 and 1.3-0 dated 2020-09-15
gtfs2gps-1.2-1/gtfs2gps/README.md |only gtfs2gps-1.3-0/gtfs2gps/DESCRIPTION | 12 - gtfs2gps-1.3-0/gtfs2gps/MD5 | 60 ++--- gtfs2gps-1.3-0/gtfs2gps/NAMESPACE | 1 gtfs2gps-1.3-0/gtfs2gps/R/append_height.R | 2 gtfs2gps-1.3-0/gtfs2gps/R/filter_day_period.R | 12 - gtfs2gps-1.3-0/gtfs2gps/R/filter_gtfs.R | 80 +++--- gtfs2gps-1.3-0/gtfs2gps/R/gps_as_sflinestring.R | 20 - gtfs2gps-1.3-0/gtfs2gps/R/gtfs2gps.R | 97 ++++++-- gtfs2gps-1.3-0/gtfs2gps/R/mod_updates.R | 118 +++++----- gtfs2gps-1.3-0/gtfs2gps/R/read_gtfs.R | 25 +- gtfs2gps-1.3-0/gtfs2gps/R/simplify_shapes.R | 4 gtfs2gps-1.3-0/gtfs2gps/R/write_gtfs.R | 2 gtfs2gps-1.3-0/gtfs2gps/R/zzz.R | 4 gtfs2gps-1.3-0/gtfs2gps/build/vignette.rds |binary gtfs2gps-1.3-0/gtfs2gps/demo/sp.R | 2 gtfs2gps-1.3-0/gtfs2gps/inst/doc/intro_to_gtfs2gps.R | 5 gtfs2gps-1.3-0/gtfs2gps/inst/doc/intro_to_gtfs2gps.Rmd | 39 +-- gtfs2gps-1.3-0/gtfs2gps/inst/doc/intro_to_gtfs2gps.html | 81 ++++-- gtfs2gps-1.3-0/gtfs2gps/man/append_height.Rd | 2 gtfs2gps-1.3-0/gtfs2gps/man/gtfs2gps.Rd | 6 gtfs2gps-1.3-0/gtfs2gps/man/read_gtfs.Rd | 6 gtfs2gps-1.3-0/gtfs2gps/man/remove_invalid.Rd | 3 gtfs2gps-1.3-0/gtfs2gps/man/simplify_shapes.Rd | 4 gtfs2gps-1.3-0/gtfs2gps/tests/testthat/test_append_height.R | 2 gtfs2gps-1.3-0/gtfs2gps/tests/testthat/test_filter_gtfs.R | 13 - gtfs2gps-1.3-0/gtfs2gps/tests/testthat/test_gps_as_sflinestring.R | 2 gtfs2gps-1.3-0/gtfs2gps/tests/testthat/test_gtfs2gps.R | 42 ++- gtfs2gps-1.3-0/gtfs2gps/tests/testthat/test_read_gtfs.R | 7 gtfs2gps-1.3-0/gtfs2gps/vignettes/intro_to_gtfs2gps.Rmd | 39 +-- gtfs2gps-1.3-0/gtfs2gps/vignettes/intro_to_gtfs2gps_files |only 31 files changed, 398 insertions(+), 292 deletions(-)
Title: Brings Seurat to the Tidyverse
Description: It creates an invisible layer that allow to see the 'Seurat' object
as tibble and interact seamlessly with the tidyverse.
Author: Stefano Mangiola [aut, cre],
Maria Doyle [ctb]
Maintainer: Stefano Mangiola <mangiolastefano@gmail.com>
Diff between tidyseurat versions 0.1.6 dated 2020-09-11 and 0.1.8 dated 2020-09-15
tidyseurat-0.1.6/tidyseurat/man/figures/unnamed-chunk-10-1.png |only tidyseurat-0.1.6/tidyseurat/man/figures/unnamed-chunk-11-1.png |only tidyseurat-0.1.6/tidyseurat/man/figures/unnamed-chunk-12-1.png |only tidyseurat-0.1.6/tidyseurat/man/figures/unnamed-chunk-13-1.png |only tidyseurat-0.1.6/tidyseurat/man/figures/unnamed-chunk-17-1.png |only tidyseurat-0.1.6/tidyseurat/man/figures/unnamed-chunk-18-1.png |only tidyseurat-0.1.6/tidyseurat/man/figures/unnamed-chunk-6-1.png |only tidyseurat-0.1.6/tidyseurat/man/figures/unnamed-chunk-7-1.png |only tidyseurat-0.1.6/tidyseurat/man/figures/unnamed-chunk-8-1.png |only tidyseurat-0.1.6/tidyseurat/man/figures/unnamed-chunk-9-1.png |only tidyseurat-0.1.6/tidyseurat/vignettes/man |only tidyseurat-0.1.8/tidyseurat/DESCRIPTION | 8 tidyseurat-0.1.8/tidyseurat/MD5 | 55 tidyseurat-0.1.8/tidyseurat/R/methods.R | 270 +- tidyseurat-0.1.8/tidyseurat/README.md | 1136 +++++----- tidyseurat-0.1.8/tidyseurat/build/tidyseurat.pdf |binary tidyseurat-0.1.8/tidyseurat/inst/doc/introduction.R | 288 +- tidyseurat-0.1.8/tidyseurat/inst/doc/introduction.Rmd | 408 --- tidyseurat-0.1.8/tidyseurat/inst/doc/introduction.html | 405 ++- tidyseurat-0.1.8/tidyseurat/man/figures/pc_plot-1.png |binary tidyseurat-0.1.8/tidyseurat/man/figures/plot1-1.png |binary tidyseurat-0.1.8/tidyseurat/man/figures/plot2-1.png |binary tidyseurat-0.1.8/tidyseurat/man/figures/plotly.png |binary tidyseurat-0.1.8/tidyseurat/man/figures/unnamed-chunk-14-1.png |binary tidyseurat-0.1.8/tidyseurat/man/figures/unnamed-chunk-15-1.png |binary tidyseurat-0.1.8/tidyseurat/man/figures/unnamed-chunk-19-1.png |only tidyseurat-0.1.8/tidyseurat/man/figures/unnamed-chunk-20-1.png |only tidyseurat-0.1.8/tidyseurat/man/figures/unnamed-chunk-23-1.png |only tidyseurat-0.1.8/tidyseurat/man/fragments |only tidyseurat-0.1.8/tidyseurat/man/join_transcripts.Rd | 31 tidyseurat-0.1.8/tidyseurat/vignettes/introduction.Rmd | 408 --- tidyseurat-0.1.8/tidyseurat/vignettes/tidyseurat.bib |only 32 files changed, 1198 insertions(+), 1811 deletions(-)
Title: Phylogenetic ANalyses of DiversificAtion
Description: Implements macroevolutionary analyses on phylogenetic trees. See
Morlon et al. (2010) <DOI:10.1371/journal.pbio.1000493>, Morlon et al. (2011)
<DOI:10.1073/pnas.1102543108>, Condamine et al. (2013) <DOI:10.1111/ele.12062>,
Morlon et al. (2014) <DOI:10.1111/ele.12251>, Manceau et al. (2015) <DOI:10.1111/ele.12415>,
Lewitus & Morlon (2016) <DOI:10.1093/sysbio/syv116>, Drury et al. (2016) <DOI:10.1093/sysbio/syw020>,
Manceau et al. (2016) <DOI:10.1093/sysbio/syw115>, Morlon et al. (2016) <DOI:10.1111/2041-210X.12526>, Clavel & Morlon (2017) <DOI:10.1073/pnas.1606868114>,
Drury et al. (2017) <DOI:10.1093/sysbio/syx079>, Lewitus & Morlon (2017) <DOI:10.1093/sysbio/syx095>,
Drury et al. (2018) <DOI:10.1371/journal.pbio.2003563>, Clavel et al. (2019) <DOI:10.1093/sysbio/syy045>, Maliet et al. (2019) <DOI:10.1038/s41559-019-0908-0>,
Billaud et al. (2019) <DOI:10.1093/sysbio/syz057>, Lewitus et al. (2019) <DOI:10.1093/sysbio/syz061>,
Aristide & Morlon (2019) <DOI:10.1111/ele.13385>, and Maliet et al. (2020) <DOI:10.1111/ele.13592>.
Author: Hélène Morlon [aut, cre, cph],
Eric Lewitus [aut, cph],
Fabien Condamine [aut, cph],
Marc Manceau [aut, cph],
Julien Clavel [aut, cph],
Jonathan Drury [aut, cph],
Olivier Billaud [aut, cph],
Odile Maliet [aut, cph],
Leandro Aristide [aut, cph]
Maintainer: Hélène Morlon <helene.morlon@bio.ens.psl.eu>
Diff between RPANDA versions 1.8 dated 2020-03-06 and 1.9 dated 2020-09-15
DESCRIPTION | 20 +++++----- MD5 | 30 ++++++++++----- NAMESPACE | 69 ++++++++++++++++++++++-------------- R/MC.rescale.R | 2 - R/MC.rescale_geog.R | 2 - R/plot_BipartiteEvol.R |only R/sim.BipartiteEvol.R |only R/utils_BipartiteEvol.R |only README.md | 4 +- man/RPANDA-package.Rd | 6 ++- man/build_network.BipartiteEvol.Rd |only man/define_species.BipartiteEvol.Rd |only man/fit_bd.Rd | 2 - man/make_gen.BipartiteEvol.Rd |only man/plot_ClaDS_phylo.Rd | 1 man/plot_div.BipartiteEvol.Rd |only man/plot_net.BipartiteEvol.Rd |only man/sim.BipartiteEvol.Rd |only man/sim_ClaDS.Rd | 1 src/RPANDA_init.c | 2 + src/fitness.c |only 21 files changed, 88 insertions(+), 51 deletions(-)
Title: Dose Rate Modelling of Carbonate-Rich Samples
Description: Translation of the 'MATLAB' program 'Carb' (Nathan and Mauz 2008 <DOI:10.1016/j.radmeas.2007.12.012>; Mauz and Hoffmann 2014) for dose rate modelling for carbonate-rich samples in the context of trapped charged dating (e.g., luminescence dating) applications.
Author: Sebastian Kreutzer [aut, trl, cre, dtc]
(<https://orcid.org/0000-0002-0734-2199>),
Roger P. Nathan [aut, cph],
Barbara Mauz [aut, cph] (<https://orcid.org/0000-0003-1504-333X>)
Maintainer: Sebastian Kreutzer <sebastian.kreutzer@aber.ac.uk>
Diff between RCarb versions 0.1.3 dated 2019-06-03 and 0.1.4 dated 2020-09-15
RCarb-0.1.3/RCarb/data/Example_Data.RData |only RCarb-0.1.3/RCarb/data/Reference_Data.RData |only RCarb-0.1.4/RCarb/DESCRIPTION | 21 +- RCarb-0.1.4/RCarb/MD5 | 42 ++--- RCarb-0.1.4/RCarb/NEWS.md | 14 + RCarb-0.1.4/RCarb/R/RCarb-package.R | 48 +++--- RCarb-0.1.4/RCarb/R/calc_DoseRate.R | 8 - RCarb-0.1.4/RCarb/R/internals_RCarb.R | 10 - RCarb-0.1.4/RCarb/R/model_DoseRate.R | 33 ++-- RCarb-0.1.4/RCarb/R/write_InputTemplate.R | 4 RCarb-0.1.4/RCarb/README.md | 31 ++-- RCarb-0.1.4/RCarb/build/partial.rdb |binary RCarb-0.1.4/RCarb/build/vignette.rds |binary RCarb-0.1.4/RCarb/data/Example_Data.rda |only RCarb-0.1.4/RCarb/data/Reference_Data.rda |only RCarb-0.1.4/RCarb/data/datalist | 4 RCarb-0.1.4/RCarb/inst/CITATION |only RCarb-0.1.4/RCarb/inst/WORDLIST |only RCarb-0.1.4/RCarb/inst/doc/GetStarted.html | 203 +++++++++++++++------------ RCarb-0.1.4/RCarb/man/Example_Data.Rd | 16 +- RCarb-0.1.4/RCarb/man/RCarb-package.Rd | 12 + RCarb-0.1.4/RCarb/man/Reference_Data.Rd | 48 +++--- RCarb-0.1.4/RCarb/man/model_DoseRate.Rd | 41 +++-- RCarb-0.1.4/RCarb/man/write_InputTemplate.Rd | 6 RCarb-0.1.4/RCarb/vignettes/GetStarted.Rmd | 11 - 25 files changed, 326 insertions(+), 226 deletions(-)
Title: Propensity Score Weighting for Causal Inference with
Observational Studies and Randomized Trials
Description: Supports propensity score weighting analysis of observational studies and randomized trials. Enables the estimation and inference of average causal effects with binary and multiple treatments using overlap weights (ATO), inverse probability of treatment weights (ATE), average treatment effect among the treated weights (ATT), matching weights (ATM) and entropy weights (ATEN), with and without propensity score trimming. These weights are members of the family of balancing weights introduced in Li, Morgan and Zaslavsky (2018) <doi:10.1080/01621459.2016.1260466> and Li and Li (2019) <doi:10.1214/19-AOAS1282>.
Author: Tianhui Zhou [aut, cre],
Guangyu Tong [aut],
Fan Li [aut],
Laine Thomas [aut],
Fan Li [aut]
Maintainer: Tianhui Zhou <tianhui.zhou@duke.edu>
Diff between PSweight versions 0.1.1 dated 2020-07-19 and 1.1.0 dated 2020-09-15
DESCRIPTION | 29 +++---- MD5 | 50 ++++++++----- NAMESPACE | 2 R/ATENbin.R |only R/ATENbin_o.R |only R/ATENbin_p.R |only R/ATENmul.R |only R/ATENmul_o.R |only R/ATENmul_p.R |only R/ATMbin.R |only R/ATMbin_o.R |only R/ATMbin_p.R |only R/ATMmul.R |only R/ATMmul_o.R |only R/ATMmul_p.R |only R/PStrim.R | 184 ++++++++++++++++++++++++++++++++++++++----------- R/PSweight.R | 115 ++++++++++++++++++++---------- R/SumStat.R | 43 +++++++---- R/SumStat_f.R | 38 ++++++---- R/SumStat_p.R | 41 ++++++---- R/plot_SumStat.R | 21 ++--- R/print_PSweight.R | 50 ++++++------- R/print_PSweightsum.R | 66 ++++++++--------- R/print_SumStat.R | 52 ++++++------- R/print_SumSumStat.R | 42 +++++------ R/summary_PSweight.R | 1 R/summary_SumStat.R | 26 +++++- man/PStrim.Rd | 51 ++++++++++--- man/PSweight.Rd | 47 +++++++----- man/SumStat.Rd | 41 ++++++---- man/plot.SumStat.Rd | 6 - man/summary.SumStat.Rd | 25 ++++-- 32 files changed, 594 insertions(+), 336 deletions(-)
Title: Stan Models for the Paired Comparison Factor Model
Description: Provides convenience functions and pre-programmed
Stan models related to the paired comparison factor model. Its purpose
is to make fitting paired comparison data using Stan easy. This
package is described in Pritikin (2020) <doi:10.1016/j.heliyon.2020.e04821>.
Author: Joshua N. Pritikin [aut, cre] (<https://orcid.org/0000-0002-9862-5484>),
Daniel C. Furr [ctb],
Trustees of Columbia University [cph]
Maintainer: Joshua N. Pritikin <jpritikin@pobox.com>
Diff between pcFactorStan versions 1.5.1 dated 2020-04-25 and 1.5.2 dated 2020-09-15
DESCRIPTION | 11 ++-- MD5 | 17 +++--- README.md | 6 +- build/vignette.rds |binary inst/CITATION |only inst/doc/manual.R | 6 +- inst/doc/manual.Rmd | 6 +- inst/doc/manual.html | 119 ++++++++++++++++++++++---------------------- man/phyActFlowPropensity.Rd | 6 +- vignettes/manual.Rmd | 6 +- 10 files changed, 93 insertions(+), 84 deletions(-)
Title: Parallel Bayesian Optimization of Hyperparameters
Description: Fast, flexible framework for implementing Bayesian optimization of model
hyperparameters according to the methods described in Snoek et al. <arXiv:1206.2944>.
The package allows the user to run scoring function in parallel, save intermediary
results, and tweak other aspects of the process to fully utilize the computing resources
available to the user.
Author: Samuel Wilson [aut, cre]
Maintainer: Samuel Wilson <samwilson303@gmail.com>
Diff between ParBayesianOptimization versions 1.1.0 dated 2020-02-24 and 1.2.1 dated 2020-09-15
DESCRIPTION | 10 +-- MD5 | 39 ++++++----- NAMESPACE | 3 NEWS.md | 11 ++- R/addIterations.R | 25 ++++++- R/bayesOpt.R | 46 +++++++++++-- R/getLocalOptimums.R | 2 README.md | 39 +++++------ build/vignette.rds |binary inst/doc/functionMaximization.html | 15 +--- inst/doc/multiPointSampling.html | 4 - inst/doc/tuningHyperparameters.html | 25 +++---- man/bayesOpt.Rd | 2 man/figures/README-plotObj-1.png |binary man/getLocalOptimums.Rd | 14 ---- man/print.Rd | 36 +++++----- tests/testthat/test-bayesOpt1D.R | 10 +-- tests/testthat/test-bayesOpt2D.R | 19 +++++ tests/testthat/test-errorHandling.R | 73 ++++++++++++++++++++++ tests/testthat/test-errorHandlingInitialization.R |only tests/testthat/test-hyperparameterTuning.R | 22 ++++++ 21 files changed, 274 insertions(+), 121 deletions(-)
More information about ParBayesianOptimization at CRAN
Permanent link
Title: Interpreting Glucose Data from Continuous Glucose Monitors
Description: Implements a wide range of metrics for measuring glucose control and glucose variability based on continuous glucose monitoring data. The list of implemented metrics is summarized in Rodbard (2009) <doi:10.1089/dia.2009.0015>. Additional visualization tools include time-series and lasagna plots.
Author: Steve Broll [aut],
Jacek Urbanek [aut],
David Buchanan [aut],
Elizabeth Chun [aut],
John Muschelli [aut],
John Schwenck [aut],
Mary Martin [aut],
Pratik Patel [aut],
Marielle Hicban [aut],
Nhan Nguyen [aut],
Irina Gaynanova [aut, cre]
Maintainer: Irina Gaynanova <irinag@stat.tamu.edu>
Diff between iglu versions 1.0.2 dated 2020-07-01 and 2.0.1 dated 2020-09-15
DESCRIPTION | 31 + MD5 | 86 +++-- NAMESPACE | 11 NEWS.md | 26 + R/AUC.R |only R/active_percent.R |only R/conga.R | 22 - R/cv_measures.R |only R/ea1c.R |only R/gmi.R |only R/gvp.r |only R/hist_roc.R |only R/mad_glu.r |only R/mage.R | 7 R/modd.R | 2 R/plot_roc.R |only R/roc.R |only R/sd_roc.R |only R/utils.R | 8 README.md | 55 ++- build/partial.rdb |binary inst/doc/iglu.R | 37 +- inst/doc/iglu.Rmd | 94 +++-- inst/doc/iglu.html | 223 ++++++++----- inst/doc/metrics_list.Rmd | 20 - inst/doc/metrics_list.html | 268 +++++++++------- inst/shiny_iglu/rsconnect/shinyapps.io/irinagain |only inst/shiny_iglu/server.R | 382 +++++++++++++++-------- inst/shiny_iglu/ui.R | 23 + man/active_percent.Rd |only man/auc.Rd |only man/conga.Rd | 11 man/cv_measures.Rd |only man/ea1c.Rd |only man/figures/README-unnamed-chunk-3-2.png |binary man/gmi.Rd |only man/gvp.Rd |only man/hist_roc.Rd |only man/mad_glu.Rd |only man/mage.Rd | 7 man/modd.Rd | 2 man/plot_roc.Rd |only man/roc.Rd |only man/sd_roc.Rd |only vignettes/iglu.Rmd | 94 +++-- vignettes/iglu_files |only vignettes/metrics_list.Rmd | 20 - 47 files changed, 942 insertions(+), 487 deletions(-)
Title: Cluster-Preserving Multivariate Joint Grid Discretization
Description: Discretize multivariate continuous data using a grid
that captures the joint distribution via preserving clusters in
the original data (Wang et al. 2020). Joint grid discretization
is applicable as a data transformation step to prepare data for
model-free inference of association, function, or causality.
Author: Jiandong Wang [aut],
Sajal Kumar [aut] (<https://orcid.org/0000-0003-0930-1582>),
Joe Song [aut, cre] (<https://orcid.org/0000-0002-6883-6547>)
Maintainer: Joe Song <joemsong@cs.nmsu.edu>
Diff between GridOnClusters versions 0.0.7 dated 2020-04-06 and 0.0.8 dated 2020-09-15
DESCRIPTION | 22 +++--- MD5 | 37 ++++++----- NAMESPACE | 12 +++ NEWS.md | 18 +++++ R/RcppExports.R | 4 - R/discretize_jointly.R | 56 ++++++++++++----- R/plot_patterns.R |only README.md | 13 +++ build/partial.rdb |only build/vignette.rds |binary inst/CITATION |only inst/REFERENCES.bib |only inst/doc/Examples.R | 58 ----------------- inst/doc/Examples.Rmd | 67 +------------------- inst/doc/Examples.html | 151 +++++++++++++++++----------------------------- man/discretize.jointly.Rd | 13 +++ man/plotGOCpatterns.Rd |only src/Joint_Grid.cpp | 42 ++++++++---- src/Joint_Grid.h | 8 +- src/RcppExports.cpp | 9 +- src/wrapper.cpp | 4 - vignettes/Examples.Rmd | 67 +------------------- 22 files changed, 234 insertions(+), 347 deletions(-)
More information about GridOnClusters at CRAN
Permanent link
Title: Biological Risk Assessment
Description: A spatio-temporal exposure-hazard model for assessing biological
risk and impact. The model is based on stochastic geometry for describing
the landscape and the exposed individuals, a dispersal kernel for the
dissemination of contaminants, a set of tools to handle spatio-temporal dataframe
and ecotoxicological equations.
Walker E, Leclerc M, Rey JF, Beaudouin R, Soubeyrand S, and Messean A, (2017),
A Spatio-Temporal Exposure-Hazard Model for Assessing Biological Risk and Impact,
Risk Analysis, <doi:10.1111/risa.12941>.
Leclerc M, Walker E, Messean A, Soubeyrand S (2018),
Spatial exposure-hazard and landscape models for assessing the impact of GM crops on non-target organisms,
Science of the Total Environment, 624, 470-479.
Author: Virgile Baudrot [aut],
Emily Walker [aut],
Jean-Francois Rey [aut, cre],
Melen Leclerc [aut],
Samuel Soubeyrand [ctb],
Marc Bourotte [ctb]
Maintainer: Jean-Francois Rey <jean-francois.rey@inrae.fr>
Diff between briskaR versions 0.1.2 dated 2018-06-07 and 1.0.0 dated 2020-09-15
briskaR-0.1.2/briskaR/R/Class-Individuals.R |only briskaR-0.1.2/briskaR/R/Class-Landscape.R |only briskaR-0.1.2/briskaR/R/Individuals-Methods.R |only briskaR-0.1.2/briskaR/R/Landscape-Individuals-Methods.R |only briskaR-0.1.2/briskaR/R/Landscape-Methods.R |only briskaR-0.1.2/briskaR/R/demo.R |only briskaR-0.1.2/briskaR/R/ecoToxic.R |only briskaR-0.1.2/briskaR/R/pollen-data.R |only briskaR-0.1.2/briskaR/R/toxicIntensity.R |only briskaR-0.1.2/briskaR/data/datalist |only briskaR-0.1.2/briskaR/man/Individuals-class.Rd |only briskaR-0.1.2/briskaR/man/Individuals-get-methods.Rd |only briskaR-0.1.2/briskaR/man/Individuals-getIndividualsLife-method.Rd |only briskaR-0.1.2/briskaR/man/Individuals-plot-methods.Rd |only briskaR-0.1.2/briskaR/man/Individuals-print-class.Rd |only briskaR-0.1.2/briskaR/man/Individuals-show-method.Rd |only briskaR-0.1.2/briskaR/man/Landscape-Individuals-plot-method.Rd |only briskaR-0.1.2/briskaR/man/Landscape-class.Rd |only briskaR-0.1.2/briskaR/man/Landscape-constructor-class.Rd |only briskaR-0.1.2/briskaR/man/Landscape-getSPSources-method.Rd |only briskaR-0.1.2/briskaR/man/Landscape-load-class.Rd |only briskaR-0.1.2/briskaR/man/Landscape-plot-method.Rd |only briskaR-0.1.2/briskaR/man/Landscape-print-method.Rd |only briskaR-0.1.2/briskaR/man/Landscape-show-method.Rd |only briskaR-0.1.2/briskaR/man/Landscape-simulateThickMargins-method.Rd |only briskaR-0.1.2/briskaR/man/Landscape-toxicIntensity-method.Rd |only briskaR-0.1.2/briskaR/man/Precipitation.Rd |only briskaR-0.1.2/briskaR/man/create.pollen.sources.Rd |only briskaR-0.1.2/briskaR/man/demo.pollen.run.Rd |only briskaR-0.1.2/briskaR/man/ecoToxic.Rd |only briskaR-0.1.2/briskaR/man/load-Individuals-class.Rd |only briskaR-0.1.2/briskaR/man/maize.emitted_pollen.Rd |only briskaR-0.1.2/briskaR/man/maize.individuals.Rd |only briskaR-0.1.2/briskaR/man/maize.landscape.Rd |only briskaR-0.1.2/briskaR/man/maize.proportion_pollen.Rd |only briskaR-0.1.2/briskaR/man/maize.toxicintensity61.Rd |only briskaR-0.1.2/briskaR/man/maize_65.Rd |only briskaR-0.1.2/briskaR/man/plotEcotoxic.Rd |only briskaR-0.1.2/briskaR/man/simulateIndividuals-constructor-class.Rd |only briskaR-0.1.2/briskaR/man/simulateLandscape-constructor-class.Rd |only briskaR-0.1.2/briskaR/vignettes/toxic21.png |only briskaR-1.0.0/briskaR/DESCRIPTION | 58 briskaR-1.0.0/briskaR/MD5 | 153 - 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Title: Thematic Maps
Description: Thematic maps are geographical maps in which spatial data distributions are visualized. This package offers a flexible, layer-based, and easy to use approach to create thematic maps, such as choropleths and bubble maps.
Author: Martijn Tennekes [aut, cre],
Jakub Nowosad [ctb],
Joel Gombin [ctb],
Sebastian Jeworutzki [ctb],
Kent Russell [ctb],
Richard Zijdeman [ctb],
John Clouse [ctb],
Robin Lovelace [ctb],
Jannes Muenchow [ctb]
Maintainer: Martijn Tennekes <mtennekes@gmail.com>
Diff between tmap versions 3.1 dated 2020-07-09 and 3.2 dated 2020-09-15
DESCRIPTION | 15 ++-- MD5 | 147 +++++++++++++++++++++--------------------- NAMESPACE | 2 NEWS | 10 ++ R/map_cat2pal.R | 9 +- R/map_cat2shape.R | 8 +- R/map_num2pal.R | 22 +++--- R/map_num2shape.R | 7 +- R/misc_text.R | 1 R/onLoad.R | 2 R/pkg.R | 15 ++-- R/plot_attributes.R | 9 +- R/plot_grid.R | 2 R/plot_map.R | 2 R/plot_meta.R | 6 + R/plot_n.R | 8 ++ R/plot_symbols.R | 2 R/plot_text.R | 29 ++------ R/pre_check_shape.R | 6 - R/pre_gather_shape_info.R | 9 ++ R/pre_process_gt.R | 18 +++-- R/pre_process_shapes.R | 58 ++++++++++++---- R/print_tmap.R | 33 +++++---- R/process_add_data_to_gps.R | 1 R/process_aes.R | 26 ++++--- R/process_breaks.R | 12 +-- R/process_color_aes.R | 2 R/process_data.R | 15 +++- R/process_fill.R | 15 ++-- R/process_layers.R | 10 +- R/process_legend_format.R | 4 - R/process_limit_nx.R | 10 ++ R/process_meta.R | 12 ++- R/process_raster.R | 9 -- R/process_shapes.R | 2 R/process_text_just.R | 9 +- R/process_tm.R | 2 R/qtm.R | 12 ++- R/shiny.R | 2 R/tm_layers.R | 22 ++++-- R/tm_layout.R | 1 R/tm_misc_elements.R | 15 ++-- R/tm_shape.R | 2 R/tm_view.R | 14 ++-- R/tmap_animation.R | 128 +++++++++++++++++++++++++++--------- R/tmap_mode.R | 19 +++-- R/tmap_options.R | 41 +++++++---- R/tmap_save.R | 20 ++++- R/view_functions.R | 2 R/view_tmap.R | 103 ++++++++++++++++------------- R/xxx_scales.R | 8 +- inst/doc/tmap-changes.Rmd | 2 inst/doc/tmap-changes.html | 4 - inst/doc/tmap-getstarted.Rmd | 4 - inst/doc/tmap-getstarted.html | 6 - inst/tips.txt | 5 + man/Shapes.Rd | 10 +- man/land.Rd | 5 - man/reexports.Rd |only man/rivers.Rd | 2 man/tm_credits.Rd | 3 man/tm_lines.Rd | 3 man/tm_polygons.Rd | 3 man/tm_sf.Rd | 2 man/tm_shape.Rd | 2 man/tm_symbols.Rd | 5 + man/tm_text.Rd | 3 man/tm_tiles.Rd | 2 man/tm_view.Rd | 14 +--- man/tmap_animation.Rd | 62 ++++++++++++++--- man/tmap_design_mode.Rd | 9 +- man/tmap_options.Rd | 14 ++-- man/tmap_save.Rd | 3 vignettes/tmap-changes.Rmd | 2 vignettes/tmap-getstarted.Rmd | 4 - 75 files changed, 680 insertions(+), 427 deletions(-)
Title: NHDPlus Tools
Description: Tools for traversing and working with National Hydrography Dataset Plus (NHDPlus) data. All methods implemented in 'nhdplusTools' are available in the NHDPlus documentation available from the US Environmental Protection Agency <https://www.epa.gov/waterdata/basic-information>.
Author: David Blodgett [aut, cre],
Mike Johnson [ctb]
Maintainer: David Blodgett <dblodgett@usgs.gov>
Diff between nhdplusTools versions 0.3.14 dated 2020-08-03 and 0.3.15 dated 2020-09-15
DESCRIPTION | 8 MD5 | 61 - NAMESPACE | 2 NEWS.md | 103 +- R/get_nhdplus.R | 56 - R/get_nhdplushr.R | 716 +++++++-------- R/get_nldi.R | 553 ++++++------ R/index_nhdplus.R | 621 ++++++------- R/plot_nhdplus.R | 70 + R/subset_nhdplus.R | 23 README.md | 353 +++---- build/vignette.rds |binary inst/doc/nhdplusTools.R | 438 ++++----- inst/doc/nhdplusTools.Rmd | 696 +++++++-------- inst/doc/nhdplusTools.html | 1152 ++++++++++++------------- inst/doc/nhdplushr.R | 244 ++--- inst/doc/nhdplushr.html | 932 +++++++++----------- inst/doc/plot_nhdplus.R | 340 +++---- inst/doc/plot_nhdplus.html | 1016 ++++++++++------------ inst/doc/point_indexing.R | 300 +++--- inst/doc/point_indexing.html | 954 ++++++++++---------- man/discover_nldi_characteristics.Rd |only man/get_nldi_basin.Rd | 84 - man/get_nldi_characteristics.Rd |only man/navigate_nldi.Rd | 10 man/plot_nhdplus.Rd | 4 man/subset_nhdplus.Rd | 6 tests/testthat/data/flowline_index_reprex.gpkg |only tests/testthat/test_get_nldi.R | 228 ++-- tests/testthat/test_index.R | 14 tests/testthat/test_plot_nhdplus.R | 9 tests/testthat/test_subset.R | 12 vignettes/nhdplusTools.Rmd | 696 +++++++-------- 33 files changed, 4949 insertions(+), 4752 deletions(-)
Title: Crunch.io Data Tools
Description: The Crunch.io service <https://crunch.io/> provides a cloud-based
data store and analytic engine, as well as an intuitive web interface.
Using this package, analysts can interact with and manipulate Crunch
datasets from within R. Importantly, this allows technical researchers to
collaborate naturally with team members, managers, and clients who prefer a
point-and-click interface.
Author: Greg Freedman Ellis [aut, cre],
Jonathan Keane [aut],
Mike Malecki [aut],
Neal Richardson [aut],
Gordon Shotwell [aut]
Maintainer: Greg Freedman Ellis <greg@crunch.io>
Diff between crunch versions 1.27.0 dated 2020-07-22 and 1.27.5 dated 2020-09-15
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crunch-1.27.5/crunch/R/dataset-stream.R | 2 crunch-1.27.5/crunch/R/dataset-update.R | 8 crunch-1.27.5/crunch/R/dataset.R | 2 crunch-1.27.5/crunch/R/datetime.R | 14 crunch-1.27.5/crunch/R/decks.R | 21 crunch-1.27.5/crunch/R/expressions.R | 616 ++++++++-- crunch-1.27.5/crunch/R/fill-variable.R |only crunch-1.27.5/crunch/R/make-array.R | 55 crunch-1.27.5/crunch/R/new-dataset.R | 2 crunch-1.27.5/crunch/R/project-folder.R | 7 crunch-1.27.5/crunch/R/rowwise.R |only crunch-1.27.5/crunch/R/search.R | 2 crunch-1.27.5/crunch/R/shoji-folder.R | 7 crunch-1.27.5/crunch/R/shoji.R | 35 crunch-1.27.5/crunch/R/show.R | 37 crunch-1.27.5/crunch/R/slides.R | 23 crunch-1.27.5/crunch/R/subtotals-and-headings.R | 1 crunch-1.27.5/crunch/R/univariate.R | 3 crunch-1.27.5/crunch/R/user.R | 22 crunch-1.27.5/crunch/R/variable-folder.R | 7 crunch-1.27.5/crunch/R/weight.R | 11 crunch-1.27.5/crunch/R/zcl.R | 26 crunch-1.27.5/crunch/build/vignette.rds |binary crunch-1.27.5/crunch/inst/WORDLIST | 9 crunch-1.27.5/crunch/inst/doc/crunch-internals.Rmd | 2 crunch-1.27.5/crunch/inst/doc/crunch-internals.html | 2 crunch-1.27.5/crunch/inst/doc/crunch.Rmd | 4 crunch-1.27.5/crunch/inst/doc/crunch.html | 4 crunch-1.27.5/crunch/inst/doc/fork-and-merge.Rmd | 2 crunch-1.27.5/crunch/inst/doc/subtotals.Rmd | 2 crunch-1.27.5/crunch/inst/doc/variable-order.Rmd | 2 crunch-1.27.5/crunch/inst/doc/variable-order.html | 2 crunch-1.27.5/crunch/inst/mocks.tgz |binary crunch-1.27.5/crunch/man/Categories.Rd | 19 crunch-1.27.5/crunch/man/Insertions.Rd | 24 crunch-1.27.5/crunch/man/SubtotalsHeadings.Rd | 9 crunch-1.27.5/crunch/man/analysis-methods.Rd | 28 crunch-1.27.5/crunch/man/appendStream.Rd | 2 crunch-1.27.5/crunch/man/applyTransforms.Rd | 12 crunch-1.27.5/crunch/man/automation-undo.Rd |only crunch-1.27.5/crunch/man/createDataset.Rd | 2 crunch-1.27.5/crunch/man/crunch-extract.Rd | 22 crunch-1.27.5/crunch/man/crunch-is.Rd | 7 crunch-1.27.5/crunch/man/crunch.Rd | 2 crunch-1.27.5/crunch/man/crunchBox.Rd | 1 crunch-1.27.5/crunch/man/cube-methods.Rd | 12 crunch-1.27.5/crunch/man/cube-missingness.Rd | 12 crunch-1.27.5/crunch/man/cut-DatetimeVariable-method.Rd |only crunch-1.27.5/crunch/man/cut-NumericVariable-method.Rd |only crunch-1.27.5/crunch/man/dataset-owner.Rd | 10 crunch-1.27.5/crunch/man/derivations.Rd | 18 crunch-1.27.5/crunch/man/describe-catalog.Rd | 36 crunch-1.27.5/crunch/man/describe-entity.Rd | 17 crunch-1.27.5/crunch/man/dim-dataset.Rd | 7 crunch-1.27.5/crunch/man/duplicated.Rd | 4 crunch-1.27.5/crunch/man/expressions-internal.Rd |only crunch-1.27.5/crunch/man/expressions.Rd | 180 +- crunch-1.27.5/crunch/man/fillExpr.Rd |only crunch-1.27.5/crunch/man/filter-catalog.Rd | 10 crunch-1.27.5/crunch/man/generateNumCutLabels.Rd |only crunch-1.27.5/crunch/man/geo.Rd | 6 crunch-1.27.5/crunch/man/hide.Rd | 21 crunch-1.27.5/crunch/man/http-methods.Rd | 2 crunch-1.27.5/crunch/man/login.Rd | 34 crunch-1.27.5/crunch/man/makeCaseVariable.Rd | 7 crunch-1.27.5/crunch/man/makeCaseWhenVariable.Rd |only crunch-1.27.5/crunch/man/modifyWeightVariables.Rd | 18 crunch-1.27.5/crunch/man/multitable-catalog.Rd | 10 crunch-1.27.5/crunch/man/na-omit-categories.Rd | 7 crunch-1.27.5/crunch/man/population.Rd | 18 crunch-1.27.5/crunch/man/preCrunchBoxCheck.Rd | 3 crunch-1.27.5/crunch/man/reassignUser.Rd |only crunch-1.27.5/crunch/man/rowCount.Rd |only crunch-1.27.5/crunch/man/rowDistinct.Rd | 18 crunch-1.27.5/crunch/man/runCrunchAutomation.Rd |only crunch-1.27.5/crunch/man/script-catalog.Rd |only crunch-1.27.5/crunch/man/searchDatasets.Rd | 2 crunch-1.27.5/crunch/man/self.Rd | 4 crunch-1.27.5/crunch/man/setEntitySlotWrapBody.Rd |only crunch-1.27.5/crunch/man/settings.Rd | 2 crunch-1.27.5/crunch/man/shoji-index.Rd | 10 crunch-1.27.5/crunch/man/toVariable.Rd | 6 crunch-1.27.5/crunch/man/tuple-methods.Rd | 8 crunch-1.27.5/crunch/man/type.Rd | 6 crunch-1.27.5/crunch/man/variable-as-methods.Rd | 24 crunch-1.27.5/crunch/man/weight.Rd | 12 crunch-1.27.5/crunch/man/weightVariables.Rd | 4 crunch-1.27.5/crunch/tests/testthat/app.crunch.io/api/progress2/2.json | 2 crunch-1.27.5/crunch/tests/testthat/helper-expectations.R | 1 crunch-1.27.5/crunch/tests/testthat/test-add-variable.R | 27 crunch-1.27.5/crunch/tests/testthat/test-auth.R | 289 ++++ crunch-1.27.5/crunch/tests/testthat/test-automation.R |only crunch-1.27.5/crunch/tests/testthat/test-case-variables.R | 13 crunch-1.27.5/crunch/tests/testthat/test-case-when-variable.R |only crunch-1.27.5/crunch/tests/testthat/test-categories.R | 33 crunch-1.27.5/crunch/tests/testthat/test-combine-categories.R | 6 crunch-1.27.5/crunch/tests/testthat/test-cut.R | 226 +++ crunch-1.27.5/crunch/tests/testthat/test-datetime.R | 11 crunch-1.27.5/crunch/tests/testthat/test-decks.R | 24 crunch-1.27.5/crunch/tests/testthat/test-derive-array.R | 2 crunch-1.27.5/crunch/tests/testthat/test-derive.R | 17 crunch-1.27.5/crunch/tests/testthat/test-exclusion-filter.R | 12 crunch-1.27.5/crunch/tests/testthat/test-expressions.R | 560 +++++++++ crunch-1.27.5/crunch/tests/testthat/test-fill-variable.R |only crunch-1.27.5/crunch/tests/testthat/test-folders.R | 2 crunch-1.27.5/crunch/tests/testthat/test-make-array.R | 4 crunch-1.27.5/crunch/tests/testthat/test-new-dataset.R | 12 crunch-1.27.5/crunch/tests/testthat/test-progress.R | 2 crunch-1.27.5/crunch/tests/testthat/test-rowwise.R |only crunch-1.27.5/crunch/tests/testthat/test-user.R | 8 crunch-1.27.5/crunch/tests/testthat/test-variable-folders.R | 2 crunch-1.27.5/crunch/tests/testthat/test-versioning.R | 4 crunch-1.27.5/crunch/tests/testthat/test-zcl.R | 31 crunch-1.27.5/crunch/vignettes/crunch-internals.Rmd | 2 crunch-1.27.5/crunch/vignettes/crunch.Rmd | 4 crunch-1.27.5/crunch/vignettes/fork-and-merge.Rmd | 2 crunch-1.27.5/crunch/vignettes/subtotals.Rmd | 2 crunch-1.27.5/crunch/vignettes/variable-order.Rmd | 2 141 files changed, 3216 insertions(+), 720 deletions(-)
Title: Bayesian and Classical Audit Sampling
Description: Implements the audit sampling workflow as discussed in Derks et al. (2019) <doi:10.31234/osf.io/9f6ub>. The package makes it easy for an auditor to plan an audit sample, sample from the population, and evaluating that sample using various confidence bounds according to the International Standards on Auditing. Furthermore, the package implements Bayesian equivalents of these methods.
Author: Koen Derks [aut, cre]
Maintainer: Koen Derks <k.derks@nyenrode.nl>
Diff between jfa versions 0.2.0 dated 2020-08-05 and 0.3.0 dated 2020-09-15
DESCRIPTION | 6 +- MD5 | 29 ++++++------ NEWS.md | 4 + R/auditPrior.R | 4 - R/evaluation.R | 93 ++++++++++++++++++++++----------------- R/hidden.R | 6 +- R/planning.R | 2 README.md | 6 +- man/auditPrior.Rd | 2 man/evaluation.Rd | 78 ++++++++++++++++---------------- man/manual/jfa_0.3.0.pdf |only man/planning.Rd | 2 tests/testthat/test-auditPrior.R | 15 ++++-- tests/testthat/test-evaluation.R | 19 +++++++ tests/testthat/test-planning.R | 8 ++- tests/testthat/test-sampling.R | 10 +++- 16 files changed, 173 insertions(+), 111 deletions(-)
Title: Conducts Mokken Scale Analysis
Description: Contains functions for performing Mokken
scale analysis on test and questionnaire data.
It includes an automated item selection algorithm, and various checks of model assumptions.
Author: L. Andries van der Ark [aut, cre],
Letty Koopman [aut],
J. Hendrik Straat [ctb],
Don van den Bergh [ctb]
Maintainer: L. Andries van der Ark <L.A.vanderArk@uva.nl>
Diff between mokken versions 3.0.2 dated 2020-04-30 and 3.0.3 dated 2020-09-15
mokken-3.0.2/mokken/data/SWMD.RData |only mokken-3.0.3/mokken/DESCRIPTION | 10 mokken-3.0.3/mokken/MD5 | 100 - mokken-3.0.3/mokken/NAMESPACE | 3 mokken-3.0.3/mokken/R/MLcoefH.R | 390 +++-- mokken-3.0.3/mokken/R/MLcoefZ.R |only mokken-3.0.3/mokken/R/aisp.R | 57 mokken-3.0.3/mokken/R/check.errors.R | 87 + mokken-3.0.3/mokken/R/check.iio.R | 4 mokken-3.0.3/mokken/R/check.monotonicity.R | 2 mokken-3.0.3/mokken/R/check.pmatrix.R | 2 mokken-3.0.3/mokken/R/check.restscore.R | 2 mokken-3.0.3/mokken/R/coefH.R | 956 +++----------- mokken-3.0.3/mokken/R/coefZ.R | 151 +- mokken-3.0.3/mokken/R/internalFunctions.R | 59 mokken-3.0.3/mokken/R/search.extended.R | 2 mokken-3.0.3/mokken/R/search.normal.R | 14 mokken-3.0.3/mokken/data/SWMD.rda |only mokken-3.0.3/mokken/data/mcmi.rda |only mokken-3.0.3/mokken/inst/CITATION | 8 mokken-3.0.3/mokken/inst/doc/GettingStartedWithMokken.pdf |binary mokken-3.0.3/mokken/man/DS14.Rd | 26 mokken-3.0.3/mokken/man/ICC.Rd | 6 mokken-3.0.3/mokken/man/MLcoefH.Rd | 100 - mokken-3.0.3/mokken/man/MLcoefZ.Rd |only mokken-3.0.3/mokken/man/MLweight.Rd | 5 mokken-3.0.3/mokken/man/SWMD.Rd | 32 mokken-3.0.3/mokken/man/acl.Rd | 6 mokken-3.0.3/mokken/man/aisp.Rd | 36 mokken-3.0.3/mokken/man/autonomySupport.Rd | 6 mokken-3.0.3/mokken/man/cavalini.Rd | 8 mokken-3.0.3/mokken/man/check.bounds.Rd | 4 mokken-3.0.3/mokken/man/check.ca.Rd | 20 mokken-3.0.3/mokken/man/check.errors.Rd | 24 mokken-3.0.3/mokken/man/check.iio.Rd | 17 mokken-3.0.3/mokken/man/check.monotonicity.Rd | 19 mokken-3.0.3/mokken/man/check.norms.Rd | 7 mokken-3.0.3/mokken/man/check.pmatrix.Rd | 18 mokken-3.0.3/mokken/man/check.reliability.Rd | 32 mokken-3.0.3/mokken/man/check.restscore.Rd | 16 mokken-3.0.3/mokken/man/coefH.Rd | 81 - mokken-3.0.3/mokken/man/coefZ.Rd | 44 mokken-3.0.3/mokken/man/mcmi.Rd |only mokken-3.0.3/mokken/man/mokken-package.Rd | 122 + mokken-3.0.3/mokken/man/plot.iio.class.Rd | 18 mokken-3.0.3/mokken/man/plot.monotonicity.class.Rd | 16 mokken-3.0.3/mokken/man/plot.pmatrix.class.Rd | 12 mokken-3.0.3/mokken/man/plot.restscore.class.Rd | 14 mokken-3.0.3/mokken/man/summary.iio.class.Rd | 25 mokken-3.0.3/mokken/man/summary.monotonicity.cass.Rd | 16 mokken-3.0.3/mokken/man/summary.pmatrix.class.Rd | 16 mokken-3.0.3/mokken/man/summary.restscore.class.Rd | 16 mokken-3.0.3/mokken/man/transreas.Rd | 15 mokken-3.0.3/mokken/man/twoway.Rd | 11 54 files changed, 1257 insertions(+), 1378 deletions(-)
Title: Convert Spatial Data Using Tidy Tables
Description: Tools to convert from specific formats to more general forms of
spatial data. Using tables to store the actual entities present in spatial
data provides flexibility, and the functions here deliberately
minimize the level of interpretation applied, leaving that for specific
applications. Includes support for simple features, round-trip for 'Spatial' classes and long-form
tables, analogous to 'ggplot2::fortify'. There is also a more 'normal form' representation
that decomposes simple features and their kin to tables of objects, parts, and unique coordinates.
Author: Michael D. Sumner [aut, cre]
Maintainer: Michael D. Sumner <mdsumner@gmail.com>
Diff between spbabel versions 0.5.1 dated 2020-04-07 and 0.5.5 dated 2020-09-15
spbabel-0.5.1/spbabel/inst/doc/spbabel.R |only spbabel-0.5.5/spbabel/DESCRIPTION | 14 spbabel-0.5.5/spbabel/MD5 | 41 - spbabel-0.5.5/spbabel/NEWS.md | 4 spbabel-0.5.5/spbabel/R/sf.r | 471 +++++++--------- spbabel-0.5.5/spbabel/R/spbabel-package.r | 114 +-- spbabel-0.5.5/spbabel/R/sptable.r | 109 +-- spbabel-0.5.5/spbabel/README.md | 18 spbabel-0.5.5/spbabel/build/vignette.rds |binary spbabel-0.5.5/spbabel/inst/doc/spbabel.Rmd | 183 ------ spbabel-0.5.5/spbabel/inst/doc/spbabel.html | 271 +-------- spbabel-0.5.5/spbabel/man/as_tibble.sfg.Rd | 4 spbabel-0.5.5/spbabel/man/semap.Rd | 2 spbabel-0.5.5/spbabel/man/sptable.Rd | 26 spbabel-0.5.5/spbabel/tests/testthat/test-replacement.R | 42 - spbabel-0.5.5/spbabel/tests/testthat/test-sf.R | 284 ++++----- spbabel-0.5.5/spbabel/tests/testthat/test-sfFromTable.R | 73 +- spbabel-0.5.5/spbabel/tests/testthat/test-spFromTable.R | 178 +++--- spbabel-0.5.5/spbabel/tests/testthat/test-sptable.R | 110 +-- spbabel-0.5.5/spbabel/tests/testthat/test-trip.R | 96 +-- spbabel-0.5.5/spbabel/tests/testthat/test-utils.R | 49 - spbabel-0.5.5/spbabel/vignettes/spbabel.Rmd | 183 ------ 22 files changed, 871 insertions(+), 1401 deletions(-)
More information about image.textlinedetector at CRAN
Permanent link
Title: Analysis of Codon Data under Stationarity using a Bayesian
Framework
Description: Is a collection of models to analyze genome scale codon
data using a Bayesian framework. Provides visualization
routines and checkpointing for model fittings. Currently
published models to analyze gene data for selection on codon
usage based on Ribosome Overhead Cost (ROC) are: ROC (Gilchrist
et al. (2015) <doi:10.1093/gbe/evv087>), and ROC with phi
(Wallace & Drummond (2013) <doi:10.1093/molbev/mst051>). In
addition 'AnaCoDa' contains three currently unpublished models.
The FONSE (First order approximation On NonSense Error) model
analyzes gene data for selection on codon usage against of
nonsense error rates. The PA (PAusing time) and PANSE (PAusing
time + NonSense Error) models use ribosome footprinting data to
analyze estimate ribosome pausing times with and without
nonsense error rate from ribosome footprinting data.
Author: Authors@R
Maintainer: Cedric Landerer <cedric.landerer@gmail.com>
Diff between AnaCoDa versions 0.1.3.0 dated 2019-05-11 and 0.1.4.4 dated 2020-09-15
AnaCoDa-0.1.3.0/AnaCoDa/man/calculate_marginal_log_likelihood.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/DESCRIPTION | 24 AnaCoDa-0.1.4.4/AnaCoDa/MD5 | 191 + AnaCoDa-0.1.4.4/AnaCoDa/NAMESPACE | 5 AnaCoDa-0.1.4.4/AnaCoDa/R/RcppExports.R |only AnaCoDa-0.1.4.4/AnaCoDa/R/genomeObject.R | 32 AnaCoDa-0.1.4.4/AnaCoDa/R/mcmcObject.R | 10 AnaCoDa-0.1.4.4/AnaCoDa/R/modelObject.R | 16 AnaCoDa-0.1.4.4/AnaCoDa/R/parameterObject.R | 713 +++--- AnaCoDa-0.1.4.4/AnaCoDa/R/plotModelObject.R | 102 AnaCoDa-0.1.4.4/AnaCoDa/R/plotParameterObject.R | 38 AnaCoDa-0.1.4.4/AnaCoDa/R/plotTraceObject.R | 269 +- AnaCoDa-0.1.4.4/AnaCoDa/R/traceObject.R | 26 AnaCoDa-0.1.4.4/AnaCoDa/build/vignette.rds |binary AnaCoDa-0.1.4.4/AnaCoDa/inst/doc/anacoda.R | 115 - AnaCoDa-0.1.4.4/AnaCoDa/inst/doc/anacoda.Rmd | 81 AnaCoDa-0.1.4.4/AnaCoDa/inst/doc/anacoda.html | 74 AnaCoDa-0.1.4.4/AnaCoDa/inst/extdata/expression.csv | 2 AnaCoDa-0.1.4.4/AnaCoDa/man/AAToCodon.Rd | 2 AnaCoDa-0.1.4.4/AnaCoDa/man/acfCSP.Rd | 12 AnaCoDa-0.1.4.4/AnaCoDa/man/acfMCMC.Rd | 3 AnaCoDa-0.1.4.4/AnaCoDa/man/addObservedSynthesisRateSet.Rd | 7 AnaCoDa-0.1.4.4/AnaCoDa/man/calculateMarginalLogLikelihood.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/convergence.test.Rd | 12 AnaCoDa-0.1.4.4/AnaCoDa/man/fixDEta.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/fixDM.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/fixSphi.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/getAdaptiveWidth.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/getCSPEstimates.Rd | 14 AnaCoDa-0.1.4.4/AnaCoDa/man/getCodonCounts.Rd | 2 AnaCoDa-0.1.4.4/AnaCoDa/man/getCodonSpecificPosteriorMeanForCodon.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/getCodonSpecificPosteriorVarianceForCodon.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/getCodonSpecificQuantilesForCodon.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/getEstimatedMixtureAssignmentForGene.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/getEstimatedMixtureAssignmentProbabilitiesForGene.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/getExpressionEstimates.Rd | 11 AnaCoDa-0.1.4.4/AnaCoDa/man/getGroupList.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/getLogLikelihoodTrace.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/getLogPosteriorMean.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/getLogPosteriorTrace.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/getNoiseOffsetPosteriorMean.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/getNoiseOffsetVariance.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/getSamples.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/getStdDevSynthesisRatePosteriorMean.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/getStdDevSynthesisRateVariance.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/getStepsToAdapt.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/getSynthesisRate.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/getSynthesisRatePosteriorMeanForGene.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/getSynthesisRatePosteriorVarianceForGene.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/getThinning.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/getTraceObject.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/initMutationCategories.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/initSelectionCategories.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/initializeCovarianceMatrices.Rd | 9 AnaCoDa-0.1.4.4/AnaCoDa/man/initializeGenomeObject.Rd | 30 AnaCoDa-0.1.4.4/AnaCoDa/man/initializeMCMCObject.Rd | 18 AnaCoDa-0.1.4.4/AnaCoDa/man/initializeModelObject.Rd | 17 AnaCoDa-0.1.4.4/AnaCoDa/man/initializeParameterObject.Rd | 48 AnaCoDa-0.1.4.4/AnaCoDa/man/initializeSynthesisRateByGenome.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/initializeSynthesisRateByList.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/initializeSynthesisRateByRandom.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/plot.Rcpp_FONSEModel.Rd | 13 AnaCoDa-0.1.4.4/AnaCoDa/man/plot.Rcpp_FONSEParameter.Rd | 10 AnaCoDa-0.1.4.4/AnaCoDa/man/plot.Rcpp_MCMCAlgorithm.Rd | 3 AnaCoDa-0.1.4.4/AnaCoDa/man/plot.Rcpp_ROCModel.Rd | 5 AnaCoDa-0.1.4.4/AnaCoDa/man/plot.Rcpp_ROCParameter.Rd | 10 AnaCoDa-0.1.4.4/AnaCoDa/man/plot.Rcpp_Trace.Rd | 15 AnaCoDa-0.1.4.4/AnaCoDa/man/plotAcceptanceRatios.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/plotCodonSpecificParameters.Rd | 14 AnaCoDa-0.1.4.4/AnaCoDa/man/readPhiValue.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/setAdaptiveWidth.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/setGroupList.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/setRestartFileSettings.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/setSamples.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/setStepsToAdapt.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/setThinning.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/man/simulateGenome.Rd |only AnaCoDa-0.1.4.4/AnaCoDa/src/CovarianceMatrix.cpp | 60 AnaCoDa-0.1.4.4/AnaCoDa/src/FONSEModel.cpp | 396 ++- AnaCoDa-0.1.4.4/AnaCoDa/src/FONSEParameter.cpp | 393 ++- AnaCoDa-0.1.4.4/AnaCoDa/src/Gene.cpp | 7 AnaCoDa-0.1.4.4/AnaCoDa/src/Genome.cpp | 52 AnaCoDa-0.1.4.4/AnaCoDa/src/MCMCAlgorithm.cpp | 429 +++ AnaCoDa-0.1.4.4/AnaCoDa/src/Model.cpp | 95 AnaCoDa-0.1.4.4/AnaCoDa/src/PAModel.cpp | 398 ++- AnaCoDa-0.1.4.4/AnaCoDa/src/PANSEModel.cpp | 1111 +++++++--- AnaCoDa-0.1.4.4/AnaCoDa/src/PANSEParameter.cpp | 640 +++++ AnaCoDa-0.1.4.4/AnaCoDa/src/PAParameter.cpp | 40 AnaCoDa-0.1.4.4/AnaCoDa/src/Parameter.cpp | 692 ++++-- AnaCoDa-0.1.4.4/AnaCoDa/src/RCPP_Model.cpp | 13 AnaCoDa-0.1.4.4/AnaCoDa/src/RCPP_Parameter.cpp | 233 +- AnaCoDa-0.1.4.4/AnaCoDa/src/RCPP_Trace.cpp | 12 AnaCoDa-0.1.4.4/AnaCoDa/src/ROCModel.cpp | 219 + AnaCoDa-0.1.4.4/AnaCoDa/src/ROCParameter.cpp | 746 ++++-- AnaCoDa-0.1.4.4/AnaCoDa/src/SequenceSummary.cpp | 41 AnaCoDa-0.1.4.4/AnaCoDa/src/Testing.cpp | 12 AnaCoDa-0.1.4.4/AnaCoDa/src/Trace.cpp | 255 +- AnaCoDa-0.1.4.4/AnaCoDa/src/include/CovarianceMatrix.h | 3 AnaCoDa-0.1.4.4/AnaCoDa/src/include/FONSE/FONSEModel.h | 43 AnaCoDa-0.1.4.4/AnaCoDa/src/include/FONSE/FONSEParameter.h | 39 AnaCoDa-0.1.4.4/AnaCoDa/src/include/Gene.h | 4 AnaCoDa-0.1.4.4/AnaCoDa/src/include/Genome.h | 4 AnaCoDa-0.1.4.4/AnaCoDa/src/include/MCMCAlgorithm.h | 2 AnaCoDa-0.1.4.4/AnaCoDa/src/include/PA/PAModel.h | 28 AnaCoDa-0.1.4.4/AnaCoDa/src/include/PA/PAParameter.h | 3 AnaCoDa-0.1.4.4/AnaCoDa/src/include/PANSE/PANSEModel.h | 79 AnaCoDa-0.1.4.4/AnaCoDa/src/include/PANSE/PANSEParameter.h | 66 AnaCoDa-0.1.4.4/AnaCoDa/src/include/ROC/ROCModel.h | 26 AnaCoDa-0.1.4.4/AnaCoDa/src/include/ROC/ROCParameter.h | 86 AnaCoDa-0.1.4.4/AnaCoDa/src/include/SequenceSummary.h | 9 AnaCoDa-0.1.4.4/AnaCoDa/src/include/base/Model.h | 24 AnaCoDa-0.1.4.4/AnaCoDa/src/include/base/Parameter.h | 60 AnaCoDa-0.1.4.4/AnaCoDa/src/include/base/Trace.h | 72 AnaCoDa-0.1.4.4/AnaCoDa/src/main.cpp | 99 AnaCoDa-0.1.4.4/AnaCoDa/tests/testthat/UnitTestingData/testMCMCROCFiles/simulatedAllUniqueR_phi_withPhiSet.csv | 2 AnaCoDa-0.1.4.4/AnaCoDa/tests/testthat/testMCMCROC.R | 98 AnaCoDa-0.1.4.4/AnaCoDa/vignettes/anacoda.Rmd | 81 117 files changed, 6511 insertions(+), 2114 deletions(-)
More information about onlineforecast at CRAN
Permanent link
Title: Bayesian Network Structure Learning, Parameter Learning and
Inference
Description: Bayesian network structure learning, parameter learning and inference.
This package implements constraint-based (PC, GS, IAMB, Inter-IAMB, Fast-IAMB, MMPC,
Hiton-PC, HPC), pairwise (ARACNE and Chow-Liu), score-based (Hill-Climbing and Tabu
Search) and hybrid (MMHC, RSMAX2, H2PC) structure learning algorithms for discrete,
Gaussian and conditional Gaussian networks, along with many score functions and
conditional independence tests.
The Naive Bayes and the Tree-Augmented Naive Bayes (TAN) classifiers are also implemented.
Some utility functions (model comparison and manipulation, random data generation, arc
orientation testing, simple and advanced plots) are included, as well as support for
parameter estimation (maximum likelihood and Bayesian) and inference, conditional
probability queries, cross-validation, bootstrap and model averaging.
Development snapshots with the latest bugfixes are available from <https://www.bnlearn.com/>.
Author: Marco Scutari [aut, cre], Robert Ness [ctb]
Maintainer: Marco Scutari <marco.scutari@gmail.com>
Diff between bnlearn versions 4.5 dated 2019-08-05 and 4.6 dated 2020-09-15
Changelog | 45 ++ DESCRIPTION | 17 MD5 | 223 ++++++------ NAMESPACE | 25 - R/arc.strength.R | 138 -------- R/backend-indep.R | 7 R/backend-s4.R | 9 R/bootstrap.R | 91 +---- R/cpdag.R | 2 R/cpq.R | 120 +++--- R/ctsdag.R | 3 R/cv.R | 6 R/data.preprocessing.R | 88 +---- R/fit.R | 15 R/foreign-read.R | 3 R/frontend-bn.R | 69 +++- R/frontend-bootstrap.R | 27 - R/frontend-data.R | 36 +- R/frontend-graph.R | 90 +++-- R/frontend-nodes.R | 46 ++ R/frontend-packages.R | 151 ++++---- R/frontend-plot.R | 7 R/frontend-queries.R |only R/frontend-score.R | 22 - R/frontend-simulation.R | 74 ---- R/gRain.R |only R/globals.R | 9 R/graphviz-backend.R | 7 R/graphviz-chart.R | 3 R/hybrid-pc.R | 4 R/impute.R | 8 R/init.R | 43 ++ R/lattice.R | 16 R/learning-algorithms.R | 2 R/pcalgo.R | 2 R/sanitization-cv.R | 4 R/sanitization-fitted.R | 4 R/sanitization-misc.R | 2 R/sanitization-models.R | 4 R/sanitization-plot.R | 5 R/sanitization-scores.R | 47 ++ R/sanitization-strength.R | 62 +++ R/sanitization-types.R | 7 R/utils-cluster.R | 2 R/utils-graph.R | 65 +++ R/utils-strength.R |only man/alarm.Rd | 3 man/arc.strength.Rd | 25 - man/asia.Rd | 3 man/blacklist.Rd |only man/bn.class.Rd | 7 man/bn.cv.Rd | 6 man/bn.fit.Rd | 5 man/bn.fit.class.Rd | 4 man/bnboot.Rd | 11 man/bnlearn-package.Rd | 14 man/clgaussian-test.Rd | 2 man/compare.Rd | 5 man/constraint.Rd | 5 man/coronary.Rd | 2 man/cpdag.Rd | 13 man/cpquery.Rd | 29 + man/foreign.Rd | 2 man/gRain.Rd | 14 man/gaussian-test.Rd | 2 man/graph.Rd | 18 - man/graphpkg.Rd | 7 man/graphviz.chart.Rd | 2 man/graphviz.plot.Rd | 11 man/hailfinder.Rd | 3 man/igraphpkg.Rd |only man/insurance.Rd | 3 man/learning-test.Rd | 2 man/mb.Rd | 16 man/network.scores.Rd | 11 man/nodeops.Rd |only man/ordering.Rd | 52 --- man/score.Rd | 9 man/strength.plot.Rd | 26 - man/structural.em.Rd | 2 man/structure.learning.Rd | 2 man/whitelists.and.blacklists.Rd | 2 src/allocations.c | 13 src/allsubs.test.c | 100 ++++- src/alpha.star.c | 27 - src/bayesian.network.c | 6 src/cg.predictive.loglikelihood.c | 8 src/colliders.c |only src/conditional.least.squares.c | 533 +++++++++++++++++++++++++++--- src/contingency.tables.c | 212 +++++++++--- src/covariance.c | 2 src/cpdag.c | 132 ------- src/custom.score.c |only src/discrete.loglikelihood.c | 49 +- src/discrete.monte.carlo.c | 212 +++--------- src/discrete.predictive.loglikelihood.c | 76 +--- src/discrete.tests.c | 126 +++---- src/discretize.c |only src/enums.c | 12 src/gaussian.monte.carlo.c | 10 src/gaussian.predictive.loglikelihood.c | 8 src/hash.c | 4 src/include/contingency.tables.h |only src/include/data.structures.h | 36 ++ src/include/preprocessing.h |only src/include/rcore.h | 1 src/include/register.h | 4 src/include/sampling.h | 7 src/include/scores.h | 5 src/include/tests.h | 35 -- src/init.c | 4 src/jonckheere.c | 106 ++++-- src/least.squares.c | 551 +++++++++++++++++++++++++++++--- src/linear.correlation.c | 6 src/loss.c | 2 src/per.node.score.c | 17 src/rcont2.c | 28 + src/which.max.c | 2 118 files changed, 2659 insertions(+), 1603 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-18 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-08-29 1.1.2
2020-06-14 1.1.1
2019-09-20 1.1.0
2019-04-17 1.0.2
2018-06-10 1.0.1
2018-04-25 1.0
Title: Utilities for Financial Years
Description: In Australia, a financial year (or fiscal year) is the period from 1 July to 30 June
of the following calendar year. As such, many databases need to represent and
validate financial years efficiently. While the use of integer years with a convention that
they represent the year ending is common, it may lead to ambiguity with calendar years.
On the other hand, string representations may be too inefficient and do not easily admit
arithmetic operations. This package tries to make validation of financial years quicker while
retaining clarity.
Author: Hugh Parsonage [aut, cre]
Maintainer: Hugh Parsonage <hugh.parsonage@gmail.com>
Diff between fy versions 0.2.0 dated 2019-10-21 and 0.3.0 dated 2020-09-15
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS.md | 7 +++++++ R/fy_year.R | 35 ++++++++++++++++++++++++++--------- R/sysdata.rda |binary R/validate_fys_permitted.R | 10 +++++++++- man/is_fy.Rd | 7 +++++-- man/validate_fys_permitted.Rd | 12 +++++++++--- tests/testthat/test-is_fy.R | 19 ++++++++++++------- tests/testthat/test-yr2fy.R | 7 +++++++ 10 files changed, 88 insertions(+), 35 deletions(-)
Title: Simulation with Kernel Density Estimation
Description: Generates random values from a univariate and multivariate continuous distribution by using kernel density estimation based on a sample. Duong (2017) <doi:10.18637/jss.v021.i07>, Christian P. Robert and George Casella (2010 ISBN:978-1-4419-1575-7) <doi:10.1007/978-1-4419-1576-4>.
Author: MAKHGAL Ganbold [aut, cre],
BAYARBAATAR Amgalan [aut]
Maintainer: MAKHGAL Ganbold <makhgal@seas.num.edu.mn>
Diff between simukde versions 1.1.0 dated 2018-10-07 and 1.2.0 dated 2020-09-15
DESCRIPTION | 12 ++++++------ MD5 | 14 +++++++------- NEWS.md | 5 +++++ R/functions.R | 34 ++++++++++++++++++++++++---------- README.md | 5 ++++- man/find_best_fit.Rd | 19 ++++++++++++++++--- man/simukde.Rd | 1 - man/simulate_kde.Rd | 11 +++++++++-- 8 files changed, 71 insertions(+), 30 deletions(-)
Title: Succinct and Correct Statistical Summaries for Reports
Description: Succinctly and correctly format statistical summaries of
various models and tests (F-test, Chi-Sq-test, Fisher-test, T-test, and rank-significance). The main purpose is unified reporting
of experimental results, working around issue such as the difficulty of
extracting model summary facts (such as with 'lm'/'glm'). This package also
includes empirical tests, such as bootstrap estimates.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between sigr versions 1.0.8 dated 2020-08-11 and 1.1.0 dated 2020-09-15
DESCRIPTION | 8 - MD5 | 26 ++-- NAMESPACE | 3 NEWS.md | 6 - R/ROC.R |only R/fns.R | 60 ---------- README.md | 6 - build/vignette.rds |binary inst/doc/lmExample.html | 78 ++++++++----- inst/doc/sigrFormatting.Rmd | 2 inst/doc/sigrFormatting.html | 234 ++++++++++++++++++++++------------------- man/add_ROC_derived_columns.Rd |only man/build_ROC_curve.Rd |only man/calcAUC.Rd | 6 - man/find_AUC_q.Rd |only vignettes/sigrFormatting.Rmd | 2 16 files changed, 208 insertions(+), 223 deletions(-)
Title: Language Server Protocol
Description: An implementation of the Language Server Protocol
for R. The Language Server protocol is used by an editor client to
integrate features like auto completion. See
<https://microsoft.github.io/language-server-protocol/> for details.
Author: Randy Lai [aut, cre],
Kun Ren [ctb]
Maintainer: Randy Lai <randy.cs.lai@gmail.com>
Diff between languageserver versions 0.3.6 dated 2020-05-25 and 0.3.7 dated 2020-09-15
DESCRIPTION | 19 +- MD5 | 81 +++++----- NEWS.md | 37 ++++ R/capabilities.R | 4 R/color.R | 52 +++--- R/completion.R | 271 +++++++++++++++++++++++++++-------- R/definition.R | 6 R/diagnostics.R | 2 R/document.R | 75 +++++---- R/folding.R |only R/formatting.R | 53 +++++- R/handlers-general.R | 8 - R/handlers-langfeatures.R | 39 +++-- R/handlers-textsync.R | 14 - R/hover.R | 147 ++++++++++++++----- R/interfaces.R | 2 R/languageclient.R | 11 + R/languageserver.R | 30 ++- R/link.R | 55 +++---- R/log.R | 8 - R/namespace.R | 11 - R/session.R |only R/signature.R | 89 +++++++++-- R/symbol.R | 214 +++++++--------------------- R/task.R | 70 +++++++-- R/utils.R | 273 +++++++++++++++++++++++++++++++++++- R/workspace.R | 37 +++- README.md | 7 man/Session.Rd |only man/SessionPool.Rd |only man/arg_completion.Rd | 10 + man/document_folding_range_reply.Rd |only man/document_uri.Rd | 2 man/languageserver-package.Rd | 4 man/style_text.Rd | 2 tests/testthat/helper-utils.R | 27 ++- tests/testthat/test-completion.R | 220 +++++++++++++++++++++++++++-- tests/testthat/test-definition.R | 66 ++++++++ tests/testthat/test-folding.R |only tests/testthat/test-formatting.R | 47 ++++++ tests/testthat/test-highlight.R | 19 ++ tests/testthat/test-hover.R | 87 +++++++++++ tests/testthat/test-link.R | 58 +++++++ tests/testthat/test-symbol.R | 142 +++++++++++++++++- tests/testthat/test-unicode-path.R |only 45 files changed, 1769 insertions(+), 530 deletions(-)
More information about languageserver at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-01 4.11
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-11 1.0.4
2020-04-23 1.0.3
2020-04-07 1.0.2