Title: Non-Parametric Trend Tests and Change-Point Detection
Description: The analysis of environmental data often requires
the detection of trends and change-points.
This package includes tests for trend detection
(Cox-Stuart Trend Test, Mann-Kendall Trend Test,
(correlated) Hirsch-Slack Test,
partial Mann-Kendall Trend Test, multivariate (multisite)
Mann-Kendall Trend Test, (Seasonal) Sen's slope,
partial Pearson and Spearman correlation trend test),
change-point detection (Lanzante's test procedures,
Pettitt's test, Buishand Range Test,
Buishand U Test, Standard Normal Homogeinity Test),
detection of non-randomness (Wallis-Moore Phase Frequency Test,
Bartels rank von Neumann's ratio test, Wald-Wolfowitz Test)
and the two sample Robust Rank-Order Distributional Test.
Author: Thorsten Pohlert [aut, cre] (<https://orcid.org/0000-0003-3855-3025>)
Maintainer: Thorsten Pohlert <thorsten.pohlert@gmx.de>
Diff between trend versions 1.1.3 dated 2020-09-01 and 1.1.4 dated 2020-09-17
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/pettitt.test.R | 3 ++- inst/NEWS.Rd | 9 +++++++++ inst/doc/trend.pdf |binary 5 files changed, 19 insertions(+), 9 deletions(-)
Title: A Driver Discovery Tool for Cancer Whole Genomes
Description: A method for finding an enrichment of cancer simple somatic mutations (SNVs and Indels) in functional elements across the human genome. 'ActiveDriverWGS' detects coding and noncoding driver elements using whole genome sequencing data. The method is part of the following publication: Candidate Cancer Driver Mutations in Distal Regulatory Elements and Long-Range Chromatin Interaction Networks. Molecular Cell (2020) <doi:10.1016/j.molcel.2019.12.027>.
Author: Juri Reimand [aut, cre],
Helen Zhu [aut]
Maintainer: Juri Reimand <juri.reimand@utoronto.ca>
Diff between ActiveDriverWGS versions 1.1.0 dated 2020-09-07 and 1.1.1 dated 2020-09-17
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 6 ++++++ R/ADWGS_test.R | 37 ++++++++++++++++++++----------------- README.md | 3 +++ man/dot-get_obs_exp.Rd | 3 +-- 6 files changed, 38 insertions(+), 27 deletions(-)
More information about ActiveDriverWGS at CRAN
Permanent link
Title: Space-Time Estimation of Forest Variables using the FIA Database
Description: The goal of 'rFIA' is to increase the accessibility and use of the United States Forest Services (USFS) Forest Inventory and Analysis (FIA) Database by providing a user-friendly, open source toolkit to easily query and analyze FIA Data. Designed to accommodate a wide range of potential user objectives, 'rFIA' simplifies the estimation of forest variables from the FIA Database and allows all R users (experts and newcomers alike) to unlock the flexibility inherent to the Enhanced FIA design. Specifically, 'rFIA' improves accessibility to the spatio-temporal estimation capacity of the FIA Database by producing space-time indexed summaries of forest variables within user-defined population boundaries. Direct integration with other popular R packages (e.g., 'dplyr', 'tidyr', and 'sf') facilitates efficient space-time query and data summary, and supports common data representations and API design. The package implements design-based estimation procedures outlined by Bechtold & Patterson (2005) <doi:10.2737/SRS-GTR-80>, and has been validated against estimates and sampling errors produced by FIA 'EVALIDator'. Current development is focused on the implementation of spatially-enabled model-assisted estimators to improve population, change, and ratio estimates.
Author: Hunter Stanke [aut, cre],
Andrew Finley [aut]
Maintainer: Hunter Stanke <stankehu@msu.edu>
Diff between rFIA versions 0.2.3 dated 2020-05-16 and 0.2.4 dated 2020-09-17
rFIA-0.2.3/rFIA/R/diMort.R |only rFIA-0.2.3/rFIA/R/diMortHelper.R |only rFIA-0.2.3/rFIA/R/mcHelper.R |only rFIA-0.2.3/rFIA/R/mortComp.R |only rFIA-0.2.3/rFIA/R/sustIndex.R |only rFIA-0.2.3/rFIA/R/sustIndexHelper.R |only rFIA-0.2.3/rFIA/R/tpaHelper_temp.R |only rFIA-0.2.4/rFIA/DESCRIPTION | 8 rFIA-0.2.4/rFIA/MD5 | 110 rFIA-0.2.4/rFIA/NAMESPACE | 18 rFIA-0.2.4/rFIA/R/areaHelper.R | 8 rFIA-0.2.4/rFIA/R/areaNew.R | 726 ++++ rFIA-0.2.4/rFIA/R/biomassHelper.R | 13 rFIA-0.2.4/rFIA/R/biomassNew.R | 346 +- rFIA-0.2.4/rFIA/R/carbon.R | 765 +++++ rFIA-0.2.4/rFIA/R/carbonHelper.R | 11 rFIA-0.2.4/rFIA/R/diversityHelper.R | 32 rFIA-0.2.4/rFIA/R/diversityNew.R | 770 +++++ rFIA-0.2.4/rFIA/R/dwmHelper.R | 7 rFIA-0.2.4/rFIA/R/dwmNew.R | 952 ++++++ rFIA-0.2.4/rFIA/R/fsi.R | 31 rFIA-0.2.4/rFIA/R/fsiHelper.R | 1380 ++++++--- rFIA-0.2.4/rFIA/R/fsiNew.R |only rFIA-0.2.4/rFIA/R/functionsFIA.R | 5074 ++-------------------------------- rFIA-0.2.4/rFIA/R/globalVars.R | 28 rFIA-0.2.4/rFIA/R/growMortHelper.R | 51 rFIA-0.2.4/rFIA/R/growMortNew.R | 287 + rFIA-0.2.4/rFIA/R/invasiveHelper.R | 15 rFIA-0.2.4/rFIA/R/invasiveNew.R | 817 +++++ rFIA-0.2.4/rFIA/R/plotFIA.R | 7 rFIA-0.2.4/rFIA/R/seedHelper.R | 9 rFIA-0.2.4/rFIA/R/seedlingNew.R | 790 +++++ rFIA-0.2.4/rFIA/R/standStructHelper.R | 7 rFIA-0.2.4/rFIA/R/standStructNew.R | 778 +++++ rFIA-0.2.4/rFIA/R/sysdata.rda |binary rFIA-0.2.4/rFIA/R/tpaHelper.R | 480 +++ rFIA-0.2.4/rFIA/R/tpaNew.R | 1580 ++++++++++ rFIA-0.2.4/rFIA/R/vegStruct.R |only rFIA-0.2.4/rFIA/R/vegStructHelper.R |only rFIA-0.2.4/rFIA/R/vitalRatesHelper.R | 4 rFIA-0.2.4/rFIA/R/vitalRatesNew.R | 1032 ++++++ rFIA-0.2.4/rFIA/data/fiaRI.rda |binary rFIA-0.2.4/rFIA/inst |only rFIA-0.2.4/rFIA/man/area.Rd | 61 rFIA-0.2.4/rFIA/man/biomass.Rd | 65 rFIA-0.2.4/rFIA/man/carbon.Rd | 59 rFIA-0.2.4/rFIA/man/clipFIA.Rd | 4 rFIA-0.2.4/rFIA/man/diversity.Rd | 59 rFIA-0.2.4/rFIA/man/dwm.Rd | 57 rFIA-0.2.4/rFIA/man/fsi.Rd | 19 rFIA-0.2.4/rFIA/man/getFIA.Rd | 4 rFIA-0.2.4/rFIA/man/growMort.Rd | 68 rFIA-0.2.4/rFIA/man/invasive.Rd | 75 rFIA-0.2.4/rFIA/man/plotFIA.Rd | 2 rFIA-0.2.4/rFIA/man/readFIA.Rd | 21 rFIA-0.2.4/rFIA/man/seedling.Rd | 65 rFIA-0.2.4/rFIA/man/standStruct.Rd | 58 rFIA-0.2.4/rFIA/man/tpa.Rd | 68 rFIA-0.2.4/rFIA/man/vegStruct.Rd |only rFIA-0.2.4/rFIA/man/vitalRates.Rd | 71 rFIA-0.2.4/rFIA/man/writeFIA.Rd | 3 61 files changed, 11176 insertions(+), 5719 deletions(-)
Title: Drag-and-Drop in 'shiny' Apps with 'SortableJS'
Description: Enables drag-and-drop behaviour in Shiny apps, by exposing the
functionality of the 'SortableJS' <https://sortablejs.github.io/Sortable/>
JavaScript library as an 'htmlwidget'.
You can use this in Shiny apps and widgets, 'learnr' tutorials as well as
R Markdown. In addition, provides a custom 'learnr' question type -
'question_rank()' - that allows ranking questions with drag-and-drop.
Author: Andrie de Vries [cre, aut],
Barret Schloerke [aut],
Kenton Russell [aut, ccp] (Original author),
RStudio [cph, fnd],
Lebedev Konstantin [cph] ('SortableJS',
https://sortablejs.github.io/Sortable/)
Maintainer: Andrie de Vries <apdevries@gmail.com>
Diff between sortable versions 0.4.3 dated 2020-08-26 and 0.4.4 dated 2020-09-17
DESCRIPTION | 9 MD5 | 14 - NEWS.md | 6 inst/doc/built_in.html | 342 +++++++++++++-------------- inst/doc/cloning.html | 398 +++++++++++++++----------------- inst/doc/novel_solutions.html | 308 +++++++++++------------- inst/doc/understanding_sortable_js.html | 354 +++++++++++++--------------- inst/doc/using_custom_css.html | 136 ++++------ 8 files changed, 746 insertions(+), 821 deletions(-)
Title: Hierarchical Multiple Imputation
Description: Runs single level and multilevel imputation models. The user just has to pass the data to the main function and, optionally, his analysis model. Basically the package then translates this analysis model into commands to impute the data according to it with functions from 'mice', 'MCMCglmm' or routines build for this package.
Author: Matthias Speidel [aut, cre] (Munich, Germany),
Joerg Drechsler [aut] (Institute for Employment Research, Nuremberg,
Germany),
Shahab Jolani [aut] (Maastricht University, Maastricht, The
Netherlands)
Maintainer: Matthias Speidel <matthias.speidel@googlemail.com>
Diff between hmi versions 0.9.19 dated 2020-07-29 and 0.9.20 dated 2020-09-17
DESCRIPTION | 10 +++--- MD5 | 13 ++++---- NAMESPACE | 2 - R/hmi_smallfunctions.R | 12 +++---- build/vignette.rds |binary inst/doc/myvignette.html | 72 ++++++++++++++++++++++++----------------------- man/hmi_pool.Rd | 9 +++-- man/interval-modulo.Rd |only 8 files changed, 61 insertions(+), 57 deletions(-)
Title: Automate Package and Project Setup
Description: Automate package and project setup tasks that are otherwise
performed manually. This includes setting up unit testing, test
coverage, continuous integration, Git, 'GitHub', licenses, 'Rcpp', 'RStudio'
projects, and more.
Author: Hadley Wickham [aut] (<https://orcid.org/0000-0003-4757-117X>),
Jennifer Bryan [aut, cre] (<https://orcid.org/0000-0002-6983-2759>),
RStudio [cph, fnd]
Maintainer: Jennifer Bryan <jenny@rstudio.com>
Diff between usethis versions 1.6.1 dated 2020-04-29 and 1.6.3 dated 2020-09-17
DESCRIPTION | 8 +++--- MD5 | 48 +++++++++++++++++++------------------- NEWS.md | 6 +++- R/ci.R | 2 - R/code-of-conduct.R | 6 ++-- R/course.R | 6 ++-- R/description.R | 2 - R/jenkins.R | 2 - R/make.R | 2 - R/rstudio.R | 2 - R/tidyverse.R | 2 - inst/templates/CODE_OF_CONDUCT.md | 3 -- man/ci.Rd | 2 - man/edit.Rd | 2 - man/use_blank_slate.Rd | 2 - man/use_code_of_conduct.Rd | 6 ++-- man/use_course_details.Rd | 6 ++-- man/use_description.Rd | 2 - man/use_jenkins.Rd | 2 - man/use_make.Rd | 2 - man/use_tidy_thanks.Rd | 2 - tests/testthat/helper.R | 39 +++++++++++++++--------------- tests/testthat/test-create.R | 9 +++---- tests/testthat/test-release.R | 2 + tests/testthat/test-use-logo.R | 4 --- 25 files changed, 87 insertions(+), 82 deletions(-)
Title: Automatic Calibration by Evolutionary Multi Objective Algorithm
Description: Multi-objective optimizer initially developed for the calibration of hydrological models.
The algorithm is a hybrid of the MEAS algorithm (Efstratiadis and Koutsoyiannis (2005) <doi:10.13140/RG.2.2.32963.81446>) by using the directional search method based on the simplexes of the objective space
and the epsilon-NGSA-II algorithm with the method of classification of the parameter vectors archiving management by epsilon-dominance (Reed and Devireddy <doi:10.1142/9789812567796_0004>).
Author: Nicolas Le Moine [aut],
Celine Monteil [aut],
Frederic Hendrickx [ctb],
Fabrice Zaoui [aut, cre]
Maintainer: Fabrice Zaoui <fabrice.zaoui@edf.fr>
Diff between caRamel versions 1.1 dated 2019-05-28 and 1.2 dated 2020-09-17
caRamel-1.1/caRamel/inst/doc/Test_Constraints.R |only caRamel-1.1/caRamel/inst/doc/Test_Constraints.Rmd |only caRamel-1.1/caRamel/inst/doc/Test_Constraints.html |only caRamel-1.1/caRamel/inst/doc/Test_Functions.R |only caRamel-1.1/caRamel/inst/doc/Test_Functions.Rmd |only caRamel-1.1/caRamel/inst/doc/Test_Functions.html |only caRamel-1.1/caRamel/vignettes/Test_Constraints.Rmd |only caRamel-1.1/caRamel/vignettes/Test_Functions.Rmd |only caRamel-1.2/caRamel/DESCRIPTION | 16 caRamel-1.2/caRamel/LICENSE |only caRamel-1.2/caRamel/MD5 | 43 - caRamel-1.2/caRamel/NEWS | 8 caRamel-1.2/caRamel/R/caRamel.R | 861 +++++++++++---------- caRamel-1.2/caRamel/R/decrease_pop.R | 2 caRamel-1.2/caRamel/README.md | 6 caRamel-1.2/caRamel/build/vignette.rds |binary caRamel-1.2/caRamel/inst/CITATION |only caRamel-1.2/caRamel/inst/doc/Benchmark.R |only caRamel-1.2/caRamel/inst/doc/Benchmark.Rmd |only caRamel-1.2/caRamel/inst/doc/Benchmark.html |only caRamel-1.2/caRamel/inst/doc/Constraints.R |only caRamel-1.2/caRamel/inst/doc/Constraints.Rmd |only caRamel-1.2/caRamel/inst/doc/Constraints.html |only caRamel-1.2/caRamel/inst/doc/Sensitivity.R |only caRamel-1.2/caRamel/inst/doc/Sensitivity.Rmd |only caRamel-1.2/caRamel/inst/doc/Sensitivity.html |only caRamel-1.2/caRamel/inst/img |only caRamel-1.2/caRamel/man/caRamel-package.Rd | 74 - caRamel-1.2/caRamel/man/caRamel.Rd | 42 - caRamel-1.2/caRamel/man/plot_population.Rd | 11 caRamel-1.2/caRamel/tests/testthat/Rplots.pdf |binary caRamel-1.2/caRamel/vignettes/Benchmark.Rmd |only caRamel-1.2/caRamel/vignettes/Constraints.Rmd |only caRamel-1.2/caRamel/vignettes/Sensitivity.Rmd |only 34 files changed, 596 insertions(+), 467 deletions(-)
Title: Landscape Metrics for Categorical Map Patterns
Description: Calculates landscape metrics for categorical landscape patterns in
a tidy workflow. 'landscapemetrics' reimplements the most common metrics from
'FRAGSTATS' (<https://www.umass.edu/landeco/research/fragstats/fragstats.html>)
and new ones from the current literature on landscape metrics.
This package supports 'raster' spatial objects and takes
RasterLayer, RasterStacks, RasterBricks or lists of RasterLayer from the
'raster' package as input arguments. It further provides utility functions
to visualize patches, select metrics and building blocks to develop new
metrics.
Author: Maximillian H.K. Hesselbarth [aut, cre]
(<https://orcid.org/0000-0003-1125-9918>),
Marco Sciaini [aut] (<https://orcid.org/0000-0002-3042-5435>),
Jakub Nowosad [aut] (<https://orcid.org/0000-0002-1057-3721>),
Sebastian Hanss [aut] (<https://orcid.org/0000-0002-3990-4897>),
Laura J. Graham [ctb] (Input on package structure),
Jeffrey Hollister [ctb] (Input on package structure),
Kimberly A. With [ctb] (Input on package structure),
Florian Privé [ctb] (Original author of underlying C++ code for
get_nearestneighbour() function),
Project Nayuki [ctb] (Original author of underlying C++ code for
get_circumscribingcircle and lsm_p_circle),
Matt Strimas-Mackey [ctb] (Bugfix in sample_metrics())
Maintainer: Maximillian H.K. Hesselbarth <mhk.hesselbarth@gmail.com>
Diff between landscapemetrics versions 1.4.6 dated 2020-08-10 and 1.5.0 dated 2020-09-17
DESCRIPTION | 8 MD5 | 593 +++++++-------- NAMESPACE | 661 ----------------- NEWS.md | 7 R/calculate_lsm.R | 2 R/extract_lsm.R | 2 R/get_adjacencies.R | 2 R/get_centroids.R | 2 R/get_patches.R | 2 R/landscape_as_list.R |only R/lsm_c_ai.R | 71 - R/lsm_c_area_cv.R | 77 -- R/lsm_c_area_mn.R | 76 -- R/lsm_c_area_sd.R | 75 - R/lsm_c_ca.R | 75 - R/lsm_c_cai_cv.R | 83 -- R/lsm_c_cai_mn.R | 83 -- R/lsm_c_cai_sd.R | 83 -- R/lsm_c_circle_cv.R | 76 -- R/lsm_c_circle_mn.R | 75 - R/lsm_c_circle_sd.R | 75 - R/lsm_c_clumpy.R | 72 - R/lsm_c_cohesion.R | 77 -- R/lsm_c_contig_cv.R | 75 - R/lsm_c_contig_mn.R | 75 - R/lsm_c_contig_sd.R | 75 - R/lsm_c_core_cv.R | 83 -- R/lsm_c_core_mn.R | 83 -- R/lsm_c_core_sd.R | 83 -- R/lsm_c_cpland.R | 83 -- R/lsm_c_dcad.R | 83 -- R/lsm_c_dcore_cv.R | 83 -- R/lsm_c_dcore_mn.R | 83 -- R/lsm_c_dcore_sd.R | 83 -- R/lsm_c_division.R | 75 - R/lsm_c_ed.R | 87 -- R/lsm_c_enn_cv.R | 79 -- R/lsm_c_enn_mn.R | 79 -- R/lsm_c_enn_sd.R | 79 -- R/lsm_c_frac_cv.R | 75 - R/lsm_c_frac_mn.R | 75 - R/lsm_c_frac_sd.R | 75 - R/lsm_c_gyrate_cv.R | 83 -- R/lsm_c_gyrate_mn.R | 83 -- R/lsm_c_gyrate_sd.R | 83 -- R/lsm_c_iji.R | 75 - R/lsm_c_lpi.R | 75 - R/lsm_c_lsi.R | 75 - R/lsm_c_mesh.R | 75 - R/lsm_c_ndca.R | 83 -- R/lsm_c_nlsi.R | 75 - R/lsm_c_np.R | 75 - R/lsm_c_pafrac.R | 79 -- R/lsm_c_para_cv.R | 75 - R/lsm_c_para_mn.R | 75 - R/lsm_c_para_sd.R | 75 - R/lsm_c_pd.R | 75 - R/lsm_c_pladj.R | 72 - R/lsm_c_pland.R | 75 - R/lsm_c_shape_cv.R | 75 - R/lsm_c_shape_mn.R | 75 - R/lsm_c_shape_sd.R | 75 - R/lsm_c_split.R | 75 - R/lsm_c_tca.R | 83 -- R/lsm_c_te.R | 83 -- R/lsm_l_ai.R | 71 - R/lsm_l_area_cv.R | 75 - R/lsm_l_area_mn.R | 75 - R/lsm_l_area_sd.R | 75 - R/lsm_l_cai_cv.R | 95 -- R/lsm_l_cai_mn.R | 95 -- R/lsm_l_cai_sd.R | 95 -- R/lsm_l_circle_cv.R | 75 - R/lsm_l_circle_mn.R | 75 - R/lsm_l_circle_sd.R | 75 - R/lsm_l_cohesion.R | 76 -- R/lsm_l_condent.R | 97 -- R/lsm_l_contag.R | 75 - R/lsm_l_contig_cv.R | 75 - R/lsm_l_contig_mn.R | 75 - R/lsm_l_contig_sd.R | 75 - R/lsm_l_core_cv.R | 95 -- R/lsm_l_core_mn.R | 95 -- R/lsm_l_core_sd.R | 95 -- R/lsm_l_dcad.R | 95 -- R/lsm_l_dcore_cv.R | 95 -- R/lsm_l_dcore_mn.R | 95 -- R/lsm_l_dcore_sd.R | 95 -- R/lsm_l_division.R | 75 - R/lsm_l_ed.R | 83 -- R/lsm_l_enn_cv.R | 79 -- R/lsm_l_enn_mn.R | 79 -- R/lsm_l_enn_sd.R | 79 -- R/lsm_l_ent.R | 88 -- R/lsm_l_frac_cv.R | 75 - R/lsm_l_frac_mn.R | 75 - R/lsm_l_frac_sd.R | 75 - R/lsm_l_gyrate_cv.R | 83 -- R/lsm_l_gyrate_mn.R | 83 -- R/lsm_l_gyrate_sd.R | 83 -- R/lsm_l_iji.R | 75 - R/lsm_l_joinent.R | 99 -- R/lsm_l_lpi.R | 75 - R/lsm_l_lsi.R | 75 - R/lsm_l_mesh.R | 75 - R/lsm_l_msidi.R | 75 - R/lsm_l_msiei.R | 75 - R/lsm_l_mutinf.R | 97 -- R/lsm_l_ndca.R | 95 -- R/lsm_l_np.R | 75 - R/lsm_l_pafrac.R | 79 -- R/lsm_l_para_cv.R | 75 - R/lsm_l_para_mn.R | 75 - R/lsm_l_para_sd.R | 75 - R/lsm_l_pd.R | 75 - R/lsm_l_pladj.R | 73 - R/lsm_l_pr.R | 72 - R/lsm_l_prd.R | 75 - R/lsm_l_relmutinf.R |only R/lsm_l_rpr.R | 80 -- R/lsm_l_shape_cv.R | 75 - R/lsm_l_shape_mn.R | 75 - R/lsm_l_shape_sd.R | 75 - R/lsm_l_shdi.R | 73 - R/lsm_l_shei.R | 71 - R/lsm_l_sidi.R | 75 - R/lsm_l_siei.R | 75 - R/lsm_l_split.R | 75 - R/lsm_l_ta.R | 75 - R/lsm_l_tca.R | 95 -- R/lsm_l_te.R | 75 - R/lsm_p_area.R | 76 -- R/lsm_p_cai.R | 95 -- R/lsm_p_circle.R | 75 - R/lsm_p_contig.R | 76 -- R/lsm_p_core.R | 87 -- R/lsm_p_enn.R | 79 -- R/lsm_p_frac.R | 76 -- R/lsm_p_gyrate.R | 84 -- R/lsm_p_ncore.R | 95 -- R/lsm_p_para.R | 75 - R/lsm_p_perim.R | 75 - R/lsm_p_shape.R | 75 - R/pad_raster.R | 2 R/raster_to_points.R | 2 R/sample_lsm.R | 1210 ++++++++++++++++---------------- R/scale_sample.R | 2 R/scale_window.R | 2 R/spatialize_lsm.R | 2 R/unpad_raster.R | 2 R/window_lsm.R | 2 inst/doc/getstarted.html | 33 man/calculate_lsm.Rd | 2 man/extract_lsm.Rd | 2 man/get_adjacencies.Rd | 2 man/get_centroids.Rd | 2 man/get_patches.Rd | 2 man/lsm_c_ai.Rd | 17 man/lsm_c_area_cv.Rd | 19 man/lsm_c_area_mn.Rd | 19 man/lsm_c_area_sd.Rd | 24 man/lsm_c_ca.Rd | 19 man/lsm_c_cai_cv.Rd | 39 - man/lsm_c_cai_mn.Rd | 39 - man/lsm_c_cai_sd.Rd | 39 - man/lsm_c_circle_cv.Rd | 19 man/lsm_c_circle_mn.Rd | 19 man/lsm_c_circle_sd.Rd | 19 man/lsm_c_clumpy.Rd | 17 man/lsm_c_cohesion.Rd | 19 man/lsm_c_contig_cv.Rd | 19 man/lsm_c_contig_mn.Rd | 19 man/lsm_c_contig_sd.Rd | 19 man/lsm_c_core_cv.Rd | 39 - man/lsm_c_core_mn.Rd | 39 - man/lsm_c_core_sd.Rd | 39 - man/lsm_c_cpland.Rd | 39 - man/lsm_c_dcad.Rd | 39 - man/lsm_c_dcore_cv.Rd | 39 - man/lsm_c_dcore_mn.Rd | 39 - man/lsm_c_dcore_sd.Rd | 39 - man/lsm_c_division.Rd | 16 man/lsm_c_ed.Rd | 19 man/lsm_c_enn_cv.Rd | 19 man/lsm_c_enn_mn.Rd | 19 man/lsm_c_enn_sd.Rd | 19 man/lsm_c_frac_cv.Rd | 19 man/lsm_c_frac_mn.Rd | 19 man/lsm_c_frac_sd.Rd | 19 man/lsm_c_gyrate_cv.Rd | 19 man/lsm_c_gyrate_mn.Rd | 19 man/lsm_c_gyrate_sd.Rd | 19 man/lsm_c_iji.Rd | 19 man/lsm_c_lpi.Rd | 19 man/lsm_c_lsi.Rd | 19 man/lsm_c_mesh.Rd | 19 man/lsm_c_ndca.Rd | 39 - man/lsm_c_nlsi.Rd | 19 man/lsm_c_np.Rd | 19 man/lsm_c_pafrac.Rd | 19 man/lsm_c_para_cv.Rd | 19 man/lsm_c_para_mn.Rd | 19 man/lsm_c_para_sd.Rd | 19 man/lsm_c_pd.Rd | 19 man/lsm_c_pladj.Rd | 17 man/lsm_c_pland.Rd | 19 man/lsm_c_shape_cv.Rd | 19 man/lsm_c_shape_mn.Rd | 19 man/lsm_c_shape_sd.Rd | 19 man/lsm_c_split.Rd | 19 man/lsm_c_tca.Rd | 19 man/lsm_c_te.Rd | 19 man/lsm_l_ai.Rd | 17 man/lsm_l_area_cv.Rd | 19 man/lsm_l_area_mn.Rd | 19 man/lsm_l_area_sd.Rd | 19 man/lsm_l_cai_cv.Rd | 39 - man/lsm_l_cai_mn.Rd | 39 - man/lsm_l_cai_sd.Rd | 39 - man/lsm_l_circle_cv.Rd | 19 man/lsm_l_circle_mn.Rd | 19 man/lsm_l_circle_sd.Rd | 19 man/lsm_l_cohesion.Rd | 19 man/lsm_l_condent.Rd | 18 man/lsm_l_contag.Rd | 19 man/lsm_l_contig_cv.Rd | 19 man/lsm_l_contig_mn.Rd | 19 man/lsm_l_contig_sd.Rd | 19 man/lsm_l_core_cv.Rd | 39 - man/lsm_l_core_mn.Rd | 39 - man/lsm_l_core_sd.Rd | 39 - man/lsm_l_dcad.Rd | 39 - man/lsm_l_dcore_cv.Rd | 39 - man/lsm_l_dcore_mn.Rd | 39 - man/lsm_l_dcore_sd.Rd | 39 - man/lsm_l_division.Rd | 19 man/lsm_l_ed.Rd | 19 man/lsm_l_enn_cv.Rd | 19 man/lsm_l_enn_mn.Rd | 19 man/lsm_l_enn_sd.Rd | 19 man/lsm_l_ent.Rd | 20 man/lsm_l_frac_cv.Rd | 19 man/lsm_l_frac_mn.Rd | 19 man/lsm_l_frac_sd.Rd | 19 man/lsm_l_gyrate_cv.Rd | 19 man/lsm_l_gyrate_mn.Rd | 19 man/lsm_l_gyrate_sd.Rd | 19 man/lsm_l_iji.Rd | 19 man/lsm_l_joinent.Rd | 22 man/lsm_l_lpi.Rd | 19 man/lsm_l_lsi.Rd | 19 man/lsm_l_mesh.Rd | 19 man/lsm_l_msidi.Rd | 19 man/lsm_l_msiei.Rd | 19 man/lsm_l_mutinf.Rd | 20 man/lsm_l_ndca.Rd | 39 - man/lsm_l_np.Rd | 19 man/lsm_l_pafrac.Rd | 19 man/lsm_l_para_cv.Rd | 19 man/lsm_l_para_mn.Rd | 19 man/lsm_l_para_sd.Rd | 19 man/lsm_l_pd.Rd | 19 man/lsm_l_pladj.Rd | 17 man/lsm_l_pr.Rd | 17 man/lsm_l_prd.Rd | 19 man/lsm_l_relmutinf.Rd |only man/lsm_l_rpr.Rd | 19 man/lsm_l_shape_cv.Rd | 19 man/lsm_l_shape_mn.Rd | 19 man/lsm_l_shape_sd.Rd | 19 man/lsm_l_shdi.Rd | 17 man/lsm_l_shei.Rd | 17 man/lsm_l_sidi.Rd | 19 man/lsm_l_siei.Rd | 19 man/lsm_l_split.Rd | 19 man/lsm_l_ta.Rd | 19 man/lsm_l_tca.Rd | 19 man/lsm_l_te.Rd | 19 man/lsm_p_area.Rd | 19 man/lsm_p_cai.Rd | 19 man/lsm_p_circle.Rd | 19 man/lsm_p_contig.Rd | 19 man/lsm_p_core.Rd | 39 - man/lsm_p_enn.Rd | 19 man/lsm_p_frac.Rd | 19 man/lsm_p_gyrate.Rd | 19 man/lsm_p_ncore.Rd | 39 - man/lsm_p_para.Rd | 19 man/lsm_p_perim.Rd | 19 man/lsm_p_shape.Rd | 19 man/pad_raster.Rd | 2 man/raster_to_points.Rd | 2 man/sample_lsm.Rd | 2 man/scale_sample.Rd | 2 man/scale_window.Rd | 2 man/spatialize_lsm.Rd | 2 man/unpad_raster.Rd | 2 man/window_lsm.Rd | 2 tests/testthat/test-landscape_as_list.R |only tests/testthat/test-lsm-l-relmutinf.R |only 300 files changed, 1610 insertions(+), 14438 deletions(-)
More information about landscapemetrics at CRAN
Permanent link
Title: Faster for Statistic Work
Description: When we do statistic work, we need to see the structure of the data.
list.str() function will help you see the structure of the data quickly.
list.plot() function can help you check every variable in your dataframe.
table_one() function will make it easy to make a baseline table including
difference tests. uv_linear(), uv_logit(), uv_cox(), uv_logrank() will give
you a hand to do univariable regression analysis, while mv_linear(),
mv_logit() and mv_cox() will carry out multivariable regression analysis.
Author: Jing Zhang [aut, cre],
Zhi Jin [aut]
Maintainer: Jing Zhang <zj391120@163.com>
Diff between fastStat versions 1.3 dated 2019-11-22 and 1.4 dated 2020-09-17
DESCRIPTION | 12 ++-- MD5 | 39 ++++++++++----- NAMESPACE | 122 ++++++++++++++++++++++++++++--------------------- R/cor2.R |only R/cor_sig.R |only R/cor_sig_star.R |only R/cor_star.R |only R/idi.R |only R/list.plot.R | 4 + R/mv_logit.R | 2 R/reshape.towide.R | 129 +++++++++++++++++++++++++++------------------------- R/round_set.R |only R/sum2.R |only R/survSum.R |only R/tabel.one.R | 2 R/uv_logit.R | 2 man/cor2.Rd |only man/cor_sig.Rd |only man/cor_sig_star.Rd |only man/cor_star.Rd |only man/idi.Rd |only man/list.plot.Rd | 4 + man/round-set.Rd |only man/survSum.Rd |only man/table_one.Rd | 31 ++++++++++-- man/uv_cox.Rd | 12 ++++ man/uv_linear.Rd | 11 +++- man/uv_logit.Rd | 11 +++- 28 files changed, 236 insertions(+), 145 deletions(-)
Title: Distances Between Phylogenetic Trees
Description: Implements measures of tree similarity, including
information-based generalized Robinson-Foulds distances
(Phylogenetic Information Distance, Clustering Information Distance,
Matching Split Information Distance; Smith, 2020)
<doi:10.1093/bioinformatics/btaa614>;
Jaccard-Robinson-Foulds distances (Bocker et al. 2013)
<doi:10.1007/978-3-642-40453-5_13>,
including the Nye et al. (2006) metric <doi:10.1093/bioinformatics/bti720>;
the Matching Split Distance (Bogdanowicz & Giaro 2012)
<doi:10.1109/TCBB.2011.48>;
Maximum Agreement Subtree distances;
the Kendall-Colijn (2016) distance <doi:10.1093/molbev/msw124>, and the
Nearest Neighbour Interchange (NNI) distance, approximated per Li et al.
(1996) <doi:10.1007/3-540-61332-3_168>.
Calculates the median of a set of trees under any distance metric.
Author: Martin R. Smith [aut, cre, cph, prg]
(<https://orcid.org/0000-0001-5660-1727>),
Roy Jonker [prg, cph],
Yong Yang [ctb, cph],
Yi Cao [ctb, cph]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between TreeDist versions 1.2.0 dated 2020-08-28 and 1.2.1 dated 2020-09-17
DESCRIPTION | 18 +++++++++--------- MD5 | 24 ++++++++++++------------ NAMESPACE | 1 + NEWS.md | 4 ++++ R/TreeDist-package.R | 4 ++++ build/partial.rdb |binary inst/doc/Generalized-RF.html | 24 ++++++++++++------------ inst/doc/Robinson-Foulds.html | 24 ++++++++++++------------ inst/doc/Using-TreeDist.Rmd | 2 +- inst/doc/Using-TreeDist.html | 16 ++++++++-------- inst/doc/information.html | 6 +++--- inst/doc/using-distances.html | 18 +++++++++--------- vignettes/Using-TreeDist.Rmd | 2 +- 13 files changed, 76 insertions(+), 67 deletions(-)
Title: Data Import, Cleaning, and Conversions for Swimming Results
Description: The goal for of the 'SwimmeR' package is to provide means of acquiring, and then analyzing, data from swimming (and diving) competitions. To that end 'SwimmeR' allows results to be read in from .html sources, like 'Hy-Tek' real time results pages, '.pdf' files, and now (on a development basis) '.hy3' files. Once read in, 'SwimmeR' can convert swimming times (performances) between the computationally useful format of seconds reported to the '100ths' place (e.g. 95.37), and the conventional reporting format (1:35.37) used in the swimming community. 'SwimmeR' can also score meets in a variety of formats with user defined point values, convert times between courses ('LCM', 'SCM', 'SCY') and draw single elimination brackets, as well as providing a suite of tools for working cleaning swimming data. This is a developmental package, not yet mature.
Author: Greg Pilgrim [aut, cre] (<https://orcid.org/0000-0001-7831-442X>),
Caitlin Baldwin [ctb]
Maintainer: Greg Pilgrim <gpilgrim2670@gmail.com>
Diff between SwimmeR versions 0.4.1 dated 2020-08-28 and 0.4.2 dated 2020-09-17
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS.md | 3 +++ README.md | 2 +- build/vignette.rds |binary inst/doc/SwimmeR.html | 9 +++------ tests/testthat/test-Read_Results_works.R | 7 +++++-- 7 files changed, 23 insertions(+), 20 deletions(-)
Title: Idiograms with Marks and Karyotype Indices
Description: Plot idiograms of karyotypes, plasmids, circular chr. having a set of data.frames
for chromosome data and optionally mark data. Two styles of chromosomes can be used: without or with
visible chromatids (when not circular).
Supports micrometers, cM and Mb or any unit. Two styles of centromeres are available: triangular and rounded;
and six styles of marks: square (squareLeft), dots, cM (cMLeft), cenStyle, upArrow, downArrow;
its legend (label) can be drawn inline or to the right of karyotypes. Idiograms can also be plotted in
concentric circles. It is possible to calculate chromosome indices by Levan et al. (1964)
<doi:10.1111/j.1601-5223.1964.tb01953.x>, karyotype indices of Watanabe et al. (1999)
<doi:10.1007/PL00013869> and Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes
by morphology Guerra (1986) and Levan et al. (1964).
Author: Fernando Roa [aut, cre],
Mariana PC Telles [ctb]
Maintainer: Fernando Roa <froao@unal.edu.co>
Diff between idiogramFISH versions 1.16.1 dated 2020-07-30 and 1.16.6 dated 2020-09-17
DESCRIPTION | 10 MD5 | 111 - NAMESPACE | 1 NEWS.md | 75 R/addNotes.R |only R/arrowPlotMark.R | 8 R/citrusSize.R | 73 R/makedfMarkColor.R | 7 R/makedfMarkColorMycolors.R | 21 R/mapXY.R | 123 + R/mapXYCenMimic.R | 10 R/mimicCenPlotMark.R | 50 R/orientation.R | 108 + R/plotDotMarks.R | 66 R/plotIdiograms.R | 2479 +++++++++++++++++------------- R/plotlabelsright.R | 52 R/posCalc.R | 2 R/rulerPlot.R | 5 R/textLabel.R | 38 README.md | 1122 ------------- data/dfMarkColor.rda |binary inst/doc/AVignette.R | 2 inst/doc/AVignette.Rmd | 2 inst/doc/index.R | 255 +-- inst/doc/index.Rmd | 207 +- inst/doc/index.html | 1442 +++++++++-------- man/addNotes.Rd |only man/citrusSize.Rd | 13 man/figures/README-example-1.png |binary man/figures/README-example2-1.png |binary man/figures/README-unnamed-chunk-17-1.png |binary man/figures/README-unnamed-chunk-18-1.png |binary man/figures/circular.png |binary man/figures/cranmanualbookdown.svg | 2 man/figures/cranversion.svg | 4 man/figures/develmanualvignette.svg | 2 man/figures/gitbadge.svg | 2 man/figures/logo.png |binary man/figures/logo2.png |only man/figures/manual.svg | 2 man/figures/pkgdownver.svg | 2 man/idiogramFISH-package.Rd | 2 man/makedfMarkColorMycolors.Rd | 11 man/plotDotMarks.Rd | 4 man/plotIdiograms.Rd | 132 + man/plotlabelsright.Rd | 7 man/posCalc.Rd | 2 man/textLabel.Rd | 4 vignettes/AVignette.Rmd | 2 vignettes/css/all.minMod.css | 2 vignettes/css/fonts/fa-regular-400a.svg |only vignettes/css/mystyle.css | 8 vignettes/css/mystyle2.css | 1 vignettes/css/mystyle3.css |only vignettes/index.Rmd | 207 +- vignettes/js/hideOutput.js |only vignettes/refs/Rrefs.bib | 2 vignettes/refs/allrefs.bib | 2 vignettes/refs/costa2019.bib |only vignettes/refs/yasuda.bib |only vignettes/refs/yi2018.bib |only 61 files changed, 3357 insertions(+), 3325 deletions(-)
Title: Export R Objects to Several Markup Languages
Description: Coerce R object to 'asciidoc', 'txt2tags',
'restructuredText', 'org', 'textile' or 'pandoc' syntax.
Package comes with a set of drivers for 'Sweave'.
Author: David Hajage [aut],
Mark Clements [cre, ctb],
Seth Falcon [ctb],
Terry Therneau [ctb],
Matti Pastell [ctb],
Friedrich Leisch [ctb]
Maintainer: Mark Clements <mark.clements@ki.se>
Diff between ascii versions 2.3 dated 2020-07-27 and 2.4 dated 2020-09-17
DESCRIPTION | 12 ++++++------ MD5 | 16 ++++++++-------- NAMESPACE | 2 ++ R/asciiVector.r | 12 ++++++++++++ R/print.character.matrix.r | 1 + R/print.r | 9 +++++---- R/unexported.R | 1 + man/ascii.Rd | 6 ++++++ man/print.character.matrix.Rd | 2 +- 9 files changed, 42 insertions(+), 19 deletions(-)
Title: Soft Maximin Estimation for Large Scale Array-Tensor Models
Description: Efficient design matrix free procedure for solving a soft maximin problem for large scale array-tensor structured models, see Lund, Mogensen and Hansen (2019) <arXiv:1805.02407>. Currently Lasso and SCAD penalized estimation is implemented.
Author: Adam Lund
Maintainer: Adam Lund <adam.lund@math.ku.dk>
Diff between SMMA versions 1.0.2 dated 2018-01-18 and 1.0.3 dated 2020-09-17
SMMA-1.0.2/SMMA/src/init.c |only SMMA-1.0.3/SMMA/DESCRIPTION | 12 - SMMA-1.0.3/SMMA/MD5 | 27 +-- SMMA-1.0.3/SMMA/R/RcppExports.R | 4 SMMA-1.0.3/SMMA/R/SMMA.R | 217 ++++++++++++++--------------- SMMA-1.0.3/SMMA/R/SMMA_RH.R | 71 ++++----- SMMA-1.0.3/SMMA/R/SMMA_predict.R | 2 SMMA-1.0.3/SMMA/R/SMMA_print.R | 2 SMMA-1.0.3/SMMA/man/RH.Rd | 16 +- SMMA-1.0.3/SMMA/man/SMMA.Rd | 112 ++++++++------- SMMA-1.0.3/SMMA/man/predict.SMMA.Rd | 2 SMMA-1.0.3/SMMA/man/print.SMMA.Rd | 2 SMMA-1.0.3/SMMA/src/RcppExports.cpp | 20 ++ SMMA-1.0.3/SMMA/src/auxfunc.h | 30 ---- SMMA-1.0.3/SMMA/src/rcppfunc.cpp | 262 ++++++++++++++++++------------------ 15 files changed, 390 insertions(+), 389 deletions(-)
Title: MST-kNN Clustering Algorithm
Description: Implements the MST-kNN clustering algorithm which was proposed by Inostroza-Ponta, M. (2008) <https://trove.nla.gov.au/work/28729389?selectedversion=NBD44634158>.
Author: Jorge Parraga-Alava [aut, cre],
Pablo Moscato [aut],
Mario Inostroza-Ponta [aut]
Maintainer: Jorge Parraga-Alava <jorge.parraga@usach.cl>
Diff between mstknnclust versions 0.3.0 dated 2020-07-14 and 0.3.1 dated 2020-09-17
mstknnclust-0.3.0/mstknnclust/inst/guide.R |only mstknnclust-0.3.0/mstknnclust/inst/guide.html |only mstknnclust-0.3.0/mstknnclust/inst/guide_files |only mstknnclust-0.3.1/mstknnclust/DESCRIPTION | 10 +-- mstknnclust-0.3.1/mstknnclust/MD5 | 29 ++++------ mstknnclust-0.3.1/mstknnclust/R/dsyeastexpression.R | 2 mstknnclust-0.3.1/mstknnclust/R/main.R | 17 +++-- mstknnclust-0.3.1/mstknnclust/inst/bibliography.bib | 2 mstknnclust-0.3.1/mstknnclust/inst/doc/guide.Rmd | 12 +++- mstknnclust-0.3.1/mstknnclust/inst/doc/guide.html | 29 +++++----- mstknnclust-0.3.1/mstknnclust/man/dsyeastexpression.Rd | 2 mstknnclust-0.3.1/mstknnclust/man/generate.intersections.mst.knn.Rd | 4 - mstknnclust-0.3.1/mstknnclust/man/generate.knn.Rd | 2 mstknnclust-0.3.1/mstknnclust/man/mst.knn.Rd | 5 + mstknnclust-0.3.1/mstknnclust/vignettes/bibliography.bib | 2 mstknnclust-0.3.1/mstknnclust/vignettes/guide.Rmd | 12 +++- mstknnclust-0.3.1/mstknnclust/vignettes/guide_files/figure-html/unnamed-chunk-6-1.png |binary 17 files changed, 74 insertions(+), 54 deletions(-)
Title: Vector Logistic Smooth Transition Models / Realized Covariances
Construction
Description: Allows the user to estimate a vector logistic smooth transition autoregressive model via maximum log-likelihood or nonlinear least squares. It further permits to test for linearity in the multivariate framework against a vector logistic smooth transition autoregressive model with a single transition variable. The estimation method is discussed in Terasvirta and Yang (2014, <doi:10.1108/S0731-9053(2013)0000031008>). Also, realized covariances can be constructed from stock market prices or returns, as explained in Andersen et al. (2001, <doi:10.1016/S0304-405X(01)00055-1>).
Author: Andrea Bucci [aut, cre, cph],
Giulio Palomba [aut],
Eduardo Rossi [aut],
Andrea Faragalli [ctb]
Maintainer: Andrea Bucci <andrea.bucci@unich.it>
Diff between starvars versions 0.1.8 dated 2020-08-13 and 1.1.1 dated 2020-09-17
DESCRIPTION | 11 +++++------ MD5 | 10 ++++++---- NAMESPACE | 4 +--- R/rcov.R | 34 +++++++++++++++++++++++++++++++--- data/Sample5minutes.RData |only man/Sample5minutes.Rd |only man/rcov.Rd | 5 ++--- 7 files changed, 45 insertions(+), 19 deletions(-)
Title: Rearrangement Distances Between Unrooted Phylogenetic Trees
Description: Fast calculation of the Subtree Prune and Regraft (SPR),
Tree Bisection and Reconnection (TBR) and Replug distances between
unrooted trees, using the algorithms of Whidden and
Matsen (2017) <arxiv:1511.07529>.
Author: Martin R. Smith [aut, cre, cph]
(<https://orcid.org/0000-0001-5660-1727>),
Chris Whidden [cph]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between TBRDist versions 1.0.1 dated 2020-07-07 and 1.0.2 dated 2020-09-17
DESCRIPTION | 14 ++++----- MD5 | 36 +++++++++++------------ NAMESPACE | 1 NEWS.md | 4 ++ R/RcppExports.R | 30 +++++++++---------- R/uspr.R | 2 - R/zzz.R | 4 ++ inst/doc/TBRDist.Rmd | 4 +- inst/doc/TBRDist.html | 58 +++++++++++++------------------------- man/TreeRearrangementDistances.Rd | 2 - src/uspr/tbr.h | 2 - src/uspr/uforest.h | 2 - src/uspr/unode.h | 2 - src/uspr/uspr.cpp | 2 - src/uspr/uspr.h | 2 - src/uspr/uspr_neighbors.cpp | 2 - src/uspr/uspr_neighbors.h | 2 - src/uspr/utree.h | 2 - vignettes/TBRDist.Rmd | 4 +- 19 files changed, 84 insertions(+), 91 deletions(-)
Title: Spatial Seemingly Unrelated Regression Models
Description: A collection of functions to test and estimate Seemingly
Unrelated Regression (usually called SUR) models, with spatial structure, by maximum
likelihood and three-stage least squares. The package estimates the
most common spatial specifications, that is, SUR with Spatial Lag of
X regressors (called SUR-SLX), SUR with Spatial Lag Model (called SUR-SLM),
SUR with Spatial Error Model (called SUR-SEM), SUR with Spatial Durbin Model (called SUR-SDM),
SUR with Spatial Durbin Error Model (called SUR-SDEM),
SUR with Spatial Autoregressive terms and Spatial Autoregressive
Disturbances (called SUR-SARAR), SUR-SARAR with Spatial Lag of X
regressors (called SUR-GNM) and SUR with Spatially Independent Model (called SUR-SIM).
The methodology of these models can be found in next references
Mur, J., Lopez, F., and Herrera, M. (2010) <doi:10.1080/17421772.2010.516443>
Lopez, F.A., Mur, J., and Angulo, A. (2014) <doi:10.1007/s00168-014-0624-2>.
Author: Ana Angulo [aut],
Fernando A Lopez [aut],
Roman Minguez [aut, cre],
Jesus Mur [aut]
Maintainer: Roman Minguez <roman.minguez@uclm.es>
Diff between spsur versions 1.0.1.5 dated 2020-08-12 and 1.0.1.6 dated 2020-09-17
DESCRIPTION | 20 ++++++++++---------- MD5 | 2 +- 2 files changed, 11 insertions(+), 11 deletions(-)
Title: An Implementation of Isolation Forest
Description: Isolation forest is anomaly detection method introduced by the paper Isolation based Anomaly Detection (Liu, Ting and Zhou <doi:10.1145/2133360.2133363>).
Author: Komala Sheshachala Srikanth [aut, cre]
Maintainer: Komala Sheshachala Srikanth <sri.teach@gmail.com>
Diff between solitude versions 1.0.1 dated 2020-07-07 and 1.1.1 dated 2020-09-17
DESCRIPTION | 12 ++++----- MD5 | 10 +++---- NEWS.md | 11 ++++++++ R/isolationForest_r6.R | 53 ++++++++++++++++++++--------------------- README.md | 62 +++++++++++++++++++++++++------------------------ man/isolationForest.Rd | 7 ++++- 6 files changed, 86 insertions(+), 69 deletions(-)
Title: Import Surface Meteorological Data from NOAA Integrated Surface
Database (ISD)
Description: Functions to import data from more than 30,000 surface
meteorological sites around the world managed by the National Oceanic and Atmospheric Administration (NOAA) Integrated Surface
Database (ISD, see <https://www.ncdc.noaa.gov/isd>).
Author: David Carslaw [aut, cre]
Maintainer: David Carslaw <david.carslaw@york.ac.uk>
Diff between worldmet versions 0.9.0 dated 2020-07-06 and 0.9.2 dated 2020-09-17
DESCRIPTION | 16 ++++++++-------- MD5 | 18 +++++++++--------- NAMESPACE | 2 ++ R/exportADMS.R | 4 ++++ R/getMeta.R | 5 +++-- R/metNOAA.R | 13 +++++++------ R/worldmet-package.R | 2 +- README.md | 2 +- man/importNOAA.Rd | 2 +- man/worldmet.Rd | 2 +- 10 files changed, 37 insertions(+), 29 deletions(-)
Title: R Interface to the Data Retriever
Description: Provides an R interface to the Data Retriever
<https://retriever.readthedocs.io/en/latest/> via the Data Retriever's
command line interface. The Data Retriever automates the
tasks of finding, downloading, and cleaning public datasets,
and then stores them in a local database.
Author: Daniel McGlinn [aut] (<https://orcid.org/0000-0003-2359-3526>),
Pranita Sharma [aut] (<https://orcid.org/0000-0002-5871-380X>),
David J Harris [aut] (<https://orcid.org/0000-0003-3332-9307>),
Henry Senyondo [aut, cre] (<https://orcid.org/0000-0001-7105-5808>),
Hao Ye [aut] (<https://orcid.org/0000-0002-8630-1458>),
Shawn Taylor [aut] (<https://orcid.org/0000-0002-6178-6903>),
Apoorva Pandey [aut] (<https://orcid.org/0000-0001-9834-4415>),
Harshit Bansal [aut] (<https://orcid.org/0000-0002-3285-812X>),
Max Pohlman [aut],
Ethan White [aut] (<https://orcid.org/0000-0001-6728-7745>)
Maintainer: Henry Senyondo <henrykironde@gmail.com>
Diff between rdataretriever versions 2.0.0 dated 2019-05-25 and 3.0.0 dated 2020-09-17
DESCRIPTION | 27 - MD5 | 48 + NAMESPACE | 12 R/rdataretriever.R | 584 ++++++++++++++++-------- README.md | 182 +++++-- man/check_for_updates.Rd |only man/check_retriever_availability.Rd |only man/commit.Rd |only man/commit_log.Rd |only man/data_retriever_version.Rd |only man/dataset_names.Rd |only man/download.Rd | 12 man/fetch.Rd | 4 man/get_citation.Rd | 2 man/get_dataset_names_upstream.Rd |only man/get_script_citation.Rd |only man/get_script_upstream.Rd |only man/install.Rd | 12 man/install_csv.Rd | 19 man/install_json.Rd | 19 man/install_msaccess.Rd | 19 man/install_mysql.Rd | 24 man/install_postgres.Rd | 27 - man/install_retriever.Rd |only man/install_sqlite.Rd | 21 man/install_xml.Rd | 19 man/reset.Rd | 2 tests/testthat/test-retriever.R | 74 ++- tests/testthat/test-retriever_v1_0_0_backward.R | 27 - tests/testthat/test_helper.R | 36 - 30 files changed, 828 insertions(+), 342 deletions(-)
More information about rdataretriever at CRAN
Permanent link
Title: Data Operator
Description: Flexibly convert data between long and wide format using just two
functions: reshape_toLong() and reshape_toWide().
Author: Jing Zhang, Zhi Jin
Maintainer: Jing Zhang<zj391120@163.com>
Diff between do versions 1.4.0.0 dated 2020-07-27 and 1.5.0.0 dated 2020-09-17
do-1.4.0.0/do/man/name.n.Rd |only do-1.4.0.0/do/man/reshape_towide.Rd |only do-1.5.0.0/do/DESCRIPTION | 8 - do-1.5.0.0/do/MD5 | 92 +++++++------ do-1.5.0.0/do/NAMESPACE | 17 ++ do-1.5.0.0/do/R/Apriori.Basket.R |only do-1.5.0.0/do/R/Replace.R | 3 do-1.5.0.0/do/R/as.data.frame.rules.R |only do-1.5.0.0/do/R/as.transactions.R |only do-1.5.0.0/do/R/factor.it.numeric.it.R |only do-1.5.0.0/do/R/model.data.R | 69 +++++++-- do-1.5.0.0/do/R/nms.R | 9 - do-1.5.0.0/do/R/rep.R |only do-1.5.0.0/do/R/reshape_toLong.R | 179 +++++++++++++------------ do-1.5.0.0/do/R/reshape_toWide.R | 198 +++++++++++++--------------- do-1.5.0.0/do/R/reverse.R | 26 --- do-1.5.0.0/do/inst/doc/version-update.Rmd | 6 do-1.5.0.0/do/inst/doc/version-update.html | 36 +++-- do-1.5.0.0/do/man/Apriori.Basket.Rd |only do-1.5.0.0/do/man/Grepl.Rd | 84 +++++------ do-1.5.0.0/do/man/Nchar.Rd | 52 +++---- do-1.5.0.0/do/man/Replace.Rd | 74 +++++----- do-1.5.0.0/do/man/Replace0.Rd | 60 ++++---- do-1.5.0.0/do/man/Replace_ex.Rd | 70 ++++----- do-1.5.0.0/do/man/Trim.Rd | 54 +++---- do-1.5.0.0/do/man/as.data.frame.rules.Rd |only do-1.5.0.0/do/man/as.transactions.Rd |only do-1.5.0.0/do/man/chinese_utf8.Rd | 34 ++-- do-1.5.0.0/do/man/col_split.Rd | 68 ++++----- do-1.5.0.0/do/man/columntrans.Rd |only do-1.5.0.0/do/man/common.Rd | 50 +++---- do-1.5.0.0/do/man/delete_left.Rd | 52 +++---- do-1.5.0.0/do/man/delete_up.Rd | 54 +++---- do-1.5.0.0/do/man/dup.connect.Rd | 54 +++---- do-1.5.0.0/do/man/equal_length.Rd | 74 +++++----- do-1.5.0.0/do/man/expand.Rd | 52 +++---- do-1.5.0.0/do/man/get_names.Rd | 42 ++--- do-1.5.0.0/do/man/grapes-equals-grapes.Rd | 50 +++---- do-1.5.0.0/do/man/grapes-s-equals-grapes.Rd | 46 +++--- do-1.5.0.0/do/man/inner_Add_Symbol.Rd | 48 +++--- do-1.5.0.0/do/man/left.Rd | 56 +++---- do-1.5.0.0/do/man/mid.Rd | 62 ++++---- do-1.5.0.0/do/man/model.data.Rd | 12 + do-1.5.0.0/do/man/names_n.Rd |only do-1.5.0.0/do/man/replicate.Rd |only do-1.5.0.0/do/man/reshape_toLong.Rd | 132 +++++++++--------- do-1.5.0.0/do/man/reshape_toWide.Rd |only do-1.5.0.0/do/man/reverse.Rd | 49 +++--- do-1.5.0.0/do/man/right.Rd | 56 +++---- do-1.5.0.0/do/man/row.freq.Rd | 40 ++--- do-1.5.0.0/do/man/split_expand.Rd | 56 +++---- do-1.5.0.0/do/man/take_out.Rd | 50 +++---- do-1.5.0.0/do/man/unique_no.NA.Rd | 44 +++--- do-1.5.0.0/do/vignettes/version-update.Rmd | 6 54 files changed, 1140 insertions(+), 1084 deletions(-)
Title: Report Functions to Create HTML and PDF Files
Description: Create and combine HTML and PDF reports from within R.
Possibility to design tables and listings for reporting and also include R plots.
Author: Richard Hooijmaijers [aut, cre],
Richard Hooijmaijers [cph]
Maintainer: Richard Hooijmaijers <richardhooijmaijers@gmail.com>
Diff between R3port versions 0.2.3 dated 2020-03-16 and 0.2.4 dated 2020-09-17
DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++------------- NEWS.md | 7 +++++++ R/ltx_list.r | 17 +++++++++-------- R/ltx_plot.r | 11 +++++++---- R/ltx_table.r | 6 ++++-- R/ltx_table_design.r | 13 +++++++------ R/table_prep.r | 2 +- build/vignette.rds |binary inst/doc/R3port-vignette.html | 12 +++++------- man/ltx_list.Rd | 3 +++ man/ltx_plot.Rd | 3 +++ man/ltx_table.Rd | 3 +++ man/ltx_table_design.Rd | 5 ++++- 14 files changed, 70 insertions(+), 46 deletions(-)
Title: Read, Write and Edit xlsx Files
Description: Simplifies the creation of Excel .xlsx files by
providing a high level interface to writing, styling and editing
worksheets. Through the use of 'Rcpp', read/write times are comparable
to the 'xlsx' and 'XLConnect' packages with the added benefit of
removing the dependency on Java.
Author: Philipp Schauberger [aut, cre],
Alexander Walker [aut],
Luca Braglia [ctb],
Joshua Sturm [ctb]
Maintainer: Philipp Schauberger <philipp@schauberger.co.at>
Diff between openxlsx versions 4.1.5 dated 2020-05-06 and 4.2.2 dated 2020-09-17
openxlsx-4.1.5/openxlsx/inst/doc/Introduction.Rnw |only openxlsx-4.1.5/openxlsx/inst/doc/Introduction.pdf |only openxlsx-4.1.5/openxlsx/inst/doc/formatting.Rnw |only openxlsx-4.1.5/openxlsx/inst/doc/formatting.pdf |only openxlsx-4.1.5/openxlsx/vignettes/Introduction-concordance.tex |only openxlsx-4.1.5/openxlsx/vignettes/Introduction.Rnw |only openxlsx-4.1.5/openxlsx/vignettes/formatting.Rnw |only openxlsx-4.2.2/openxlsx/DESCRIPTION | 18 openxlsx-4.2.2/openxlsx/MD5 | 72 openxlsx-4.2.2/openxlsx/NAMESPACE | 4 openxlsx-4.2.2/openxlsx/NEWS.md | 69 openxlsx-4.2.2/openxlsx/R/RcppExports.R | 4 openxlsx-4.2.2/openxlsx/R/WorkbookClass.R | 206 + openxlsx-4.2.2/openxlsx/R/baseXML.R | 1 openxlsx-4.2.2/openxlsx/R/class_definitions.R | 7 openxlsx-4.2.2/openxlsx/R/conditional_formatting.R | 109 openxlsx-4.2.2/openxlsx/R/workbook_column_widths.R | 14 openxlsx-4.2.2/openxlsx/R/worksheet_class.R | 10 openxlsx-4.2.2/openxlsx/R/wrappers.R | 1319 ++++++---- openxlsx-4.2.2/openxlsx/R/writeData.R | 10 openxlsx-4.2.2/openxlsx/README.md | 2 openxlsx-4.2.2/openxlsx/build/vignette.rds |binary openxlsx-4.2.2/openxlsx/inst/WORDLIST |only openxlsx-4.2.2/openxlsx/inst/doc/Formatting.R |only openxlsx-4.2.2/openxlsx/inst/doc/Formatting.Rmd |only openxlsx-4.2.2/openxlsx/inst/doc/Formatting.html |only openxlsx-4.2.2/openxlsx/inst/doc/Introduction.R |only openxlsx-4.2.2/openxlsx/inst/doc/Introduction.Rmd |only openxlsx-4.2.2/openxlsx/inst/doc/Introduction.html |only openxlsx-4.2.2/openxlsx/inst/extdata/groupTest.xlsx |only openxlsx-4.2.2/openxlsx/man/conditionalFormatting.Rd | 26 openxlsx-4.2.2/openxlsx/man/groupColumns.Rd |only openxlsx-4.2.2/openxlsx/man/groupRows.Rd |only openxlsx-4.2.2/openxlsx/man/saveWorkbook.Rd | 7 openxlsx-4.2.2/openxlsx/man/setColWidths.Rd | 2 openxlsx-4.2.2/openxlsx/man/ungroupColumns.Rd |only openxlsx-4.2.2/openxlsx/man/ungroupRows.Rd |only openxlsx-4.2.2/openxlsx/man/writeData.Rd | 2 openxlsx-4.2.2/openxlsx/src/RcppExports.cpp | 11 openxlsx-4.2.2/openxlsx/src/helper_functions.cpp | 2 openxlsx-4.2.2/openxlsx/src/load_workbook.cpp | 102 openxlsx-4.2.2/openxlsx/src/write_file_2.cpp | 109 openxlsx-4.2.2/openxlsx/tests/testthat/test-Worksheet_naming.R |only openxlsx-4.2.2/openxlsx/tests/testthat/test-outlines.R |only openxlsx-4.2.2/openxlsx/tests/testthat/test-protect-workbook.R | 19 openxlsx-4.2.2/openxlsx/tests/testthat/test-saveWorkbook.R |only openxlsx-4.2.2/openxlsx/tests/testthat/test-writing_posixct.R | 30 openxlsx-4.2.2/openxlsx/vignettes/Formatting.Rmd |only openxlsx-4.2.2/openxlsx/vignettes/Introduction.Rmd |only 49 files changed, 1478 insertions(+), 677 deletions(-)
Title: Indices of Effect Size and Standardized Parameters
Description: Provide utilities to work with indices of effect size and standardized parameters for a wide variety of models (see support list of insight; Lüdecke, Waggoner & Makowski (2019) <doi:10.21105/joss.01412>), allowing computation and conversion of indices such as Cohen's d, r, odds, etc.
Author: Mattan S. Ben-Shachar [aut, cre]
(<https://orcid.org/0000-0002-4287-4801>),
Dominique Makowski [aut] (<https://orcid.org/0000-0001-5375-9967>),
Daniel Lüdecke [aut] (<https://orcid.org/0000-0002-8895-3206>),
Ken Kelley [ctb],
David Stanley [ctb]
Maintainer: Mattan S. Ben-Shachar <matanshm@post.bgu.ac.il>
Diff between effectsize versions 0.3.2 dated 2020-07-27 and 0.3.3 dated 2020-09-17
effectsize-0.3.2/effectsize/R/convert_d_to_percentage.R |only effectsize-0.3.2/effectsize/R/convert_odds_to_d.R |only effectsize-0.3.2/effectsize/R/convert_percentile_to_z.R |only effectsize-0.3.2/effectsize/R/interpret_fit.R |only effectsize-0.3.2/effectsize/man/convert_z_to_percentile.Rd |only effectsize-0.3.3/effectsize/DESCRIPTION | 14 effectsize-0.3.3/effectsize/MD5 | 146 +++--- effectsize-0.3.3/effectsize/NAMESPACE | 31 - effectsize-0.3.3/effectsize/NEWS.md | 17 effectsize-0.3.3/effectsize/R/adjust.R | 11 effectsize-0.3.3/effectsize/R/change_scale.R | 16 effectsize-0.3.3/effectsize/R/cohens_d.R | 29 - effectsize-0.3.3/effectsize/R/convert_d_to_common_language.R |only effectsize-0.3.3/effectsize/R/convert_d_to_r.R | 122 ++++- effectsize-0.3.3/effectsize/R/convert_odds_to_probs.R | 88 ++- effectsize-0.3.3/effectsize/R/convert_tF_to_pve.R | 13 effectsize-0.3.3/effectsize/R/convert_tFz_to_d.R | 3 effectsize-0.3.3/effectsize/R/convert_tFz_to_r.R | 5 effectsize-0.3.3/effectsize/R/eta_squared.R | 73 +-- effectsize-0.3.3/effectsize/R/eta_squared_posterior.R | 26 - effectsize-0.3.3/effectsize/R/interpret_bayesian_indices.R | 38 - effectsize-0.3.3/effectsize/R/interpret_bf.R | 2 effectsize-0.3.3/effectsize/R/interpret_cfa_fit.R |only effectsize-0.3.3/effectsize/R/interpret_d.R | 5 effectsize-0.3.3/effectsize/R/interpret_direction.R | 2 effectsize-0.3.3/effectsize/R/interpret_odds.R | 2 effectsize-0.3.3/effectsize/R/interpret_omega_squared.R | 3 effectsize-0.3.3/effectsize/R/interpret_p.R | 2 effectsize-0.3.3/effectsize/R/interpret_parameters.R | 14 effectsize-0.3.3/effectsize/R/interpret_r.R | 2 effectsize-0.3.3/effectsize/R/interpret_r2.R | 2 effectsize-0.3.3/effectsize/R/interpret_rope.R |only effectsize-0.3.3/effectsize/R/is_effectsize_name.R | 11 effectsize-0.3.3/effectsize/R/normalize.R | 28 + effectsize-0.3.3/effectsize/R/phi_cramers_v.R | 25 - effectsize-0.3.3/effectsize/R/plot.R | 3 effectsize-0.3.3/effectsize/R/print.effectsize_difference.R |only effectsize-0.3.3/effectsize/R/print.effectsize_table.R | 5 effectsize-0.3.3/effectsize/R/ranktransform.R | 16 effectsize-0.3.3/effectsize/R/standardize.R | 51 +- effectsize-0.3.3/effectsize/R/standardize.data.frame.R | 17 effectsize-0.3.3/effectsize/R/standardize.models.R | 52 +- effectsize-0.3.3/effectsize/R/standardize_info.R | 174 ++++++- effectsize-0.3.3/effectsize/R/standardize_parameters.R | 165 +++++-- effectsize-0.3.3/effectsize/R/zzz_depricated.R |only effectsize-0.3.3/effectsize/build/partial.rdb |binary effectsize-0.3.3/effectsize/inst/doc/standardize_parameters.html | 8 effectsize-0.3.3/effectsize/man/F_to_eta2.Rd | 18 effectsize-0.3.3/effectsize/man/adjust.Rd | 3 effectsize-0.3.3/effectsize/man/change_scale.Rd | 125 ++--- effectsize-0.3.3/effectsize/man/cohens_d.Rd | 40 + effectsize-0.3.3/effectsize/man/d_to_common_language.Rd |only effectsize-0.3.3/effectsize/man/d_to_r.Rd | 124 ++--- effectsize-0.3.3/effectsize/man/es_info.Rd | 2 effectsize-0.3.3/effectsize/man/eta_squared.Rd | 27 - effectsize-0.3.3/effectsize/man/eta_squared_posterior.Rd | 26 - effectsize-0.3.3/effectsize/man/interpret_bf.Rd | 4 effectsize-0.3.3/effectsize/man/interpret_d.Rd | 5 effectsize-0.3.3/effectsize/man/interpret_direction.Rd | 4 effectsize-0.3.3/effectsize/man/interpret_ess.Rd | 14 effectsize-0.3.3/effectsize/man/interpret_gfi.Rd | 4 effectsize-0.3.3/effectsize/man/interpret_odds.Rd | 4 effectsize-0.3.3/effectsize/man/interpret_omega_squared.Rd | 4 effectsize-0.3.3/effectsize/man/interpret_p.Rd | 4 effectsize-0.3.3/effectsize/man/interpret_parameters.Rd | 77 +-- effectsize-0.3.3/effectsize/man/interpret_r.Rd | 4 effectsize-0.3.3/effectsize/man/interpret_r2.Rd | 4 effectsize-0.3.3/effectsize/man/interpret_rope.Rd |only effectsize-0.3.3/effectsize/man/normalize.Rd | 128 +++-- effectsize-0.3.3/effectsize/man/odds_to_probs.Rd |only effectsize-0.3.3/effectsize/man/phi.Rd | 8 effectsize-0.3.3/effectsize/man/ranktransform.Rd | 125 ++--- effectsize-0.3.3/effectsize/man/sd_pooled.Rd | 6 effectsize-0.3.3/effectsize/man/standardize.Rd | 213 +++++---- effectsize-0.3.3/effectsize/man/standardize_info.Rd | 4 effectsize-0.3.3/effectsize/man/standardize_parameters.Rd | 114 +++-- effectsize-0.3.3/effectsize/man/t_to_r.Rd | 226 +++++----- effectsize-0.3.3/effectsize/tests/testthat/test-convert.R | 48 -- effectsize-0.3.3/effectsize/tests/testthat/test-odds_probs.R |only effectsize-0.3.3/effectsize/tests/testthat/test-standardize.R | 33 + effectsize-0.3.3/effectsize/tests/testthat/test-standardize_parameters.R | 101 ++++ 81 files changed, 1726 insertions(+), 994 deletions(-)
Title: Implement Download Buttons in 'rmarkdown'
Description: Implement download buttons in HTML output from 'rmarkdown' without the need for 'runtime:shiny'.
Author: Felipe Mattioni Maturana [aut, cre]
(<https://orcid.org/0000-0002-4221-6104>)
Maintainer: Felipe Mattioni Maturana <felipe.mattioni@med.uni-tuebingen.de>
Diff between downloadthis versions 0.2.0 dated 2020-05-04 and 0.2.1 dated 2020-09-17
DESCRIPTION | 12 +- MD5 | 30 +++-- NAMESPACE | 3 NEWS.md | 8 + R/download.R | 156 +++++++++++++++++++++-------- R/utils.R | 32 +++++- README.md | 9 - build/vignette.rds |binary inst/doc/button_types.html | 168 +++++++++++++++++--------------- inst/doc/customization.html | 212 +++++++++++++++++++++------------------- inst/doc/downloadthis.R | 11 ++ inst/doc/downloadthis.Rmd | 15 ++ inst/doc/downloadthis.html | 231 +++++++++++++++++++++++++------------------- man/download_this.Rd | 21 ++-- tests |only vignettes/downloadthis.Rmd | 15 ++ 16 files changed, 569 insertions(+), 354 deletions(-)
Title: Fast and Flexible Implementations of Exploratory Factor Analysis
Tools
Description: Provides functions to perform exploratory factor analysis (EFA) procedures and compare their solutions. The goal is to provide state-of-the-art factor retention methods and a high degree of flexibility in the EFA procedures. This way, for example, implementations from R 'psych' and 'SPSS' can be compared. Moreover, functions for Schmid-Leiman transformation and the computation of omegas are provided. To speed up the analyses, some of the iterative procedures, like principal axis factoring (PAF), are implemented in C++.
Author: Markus Steiner [aut, cre],
Silvia Grieder [aut],
William Revelle [ctb],
Max Auerswald [ctb],
Morten Moshagen [ctb],
John Ruscio [ctb],
Brendan Roche [ctb],
Urbano Lorenzo-Seva [ctb],
David Navarro-Gonzalez [ctb]
Maintainer: Markus Steiner <markus.d.steiner@gmail.com>
Diff between EFAtools versions 0.1.1 dated 2020-07-13 and 0.2.0 dated 2020-09-17
DESCRIPTION | 10 MD5 | 172 ++--- NAMESPACE | 8 NEWS.md | 49 + R/CD.R | 18 R/COMPARE.R | 99 ++- R/EFA.R | 86 +- R/EFAtools-package.R | 1 R/FACTOR_SCORES.R |only R/HULL.R | 42 - R/KMO.R | 3 R/ML.R | 10 R/N_FACTORS.R | 105 ++- R/OMEGA.R | 67 +- R/OMEGA_helper.R | 63 + R/PAF.R | 10 R/PARALLEL.R | 49 - R/PROMAX.R | 84 +- R/ROTATE_OBLQ.R | 46 - R/ROTATE_ORTH.R | 44 - R/RcppExports.R | 12 R/SCREE.R |only R/SL.R | 140 +++- R/SMT.R | 20 R/ULS.R | 6 R/VARIMAX.R | 147 +++- R/helper.R | 154 +--- R/plot.CD.R | 8 R/plot.EKC.R | 8 R/plot.KGC.R | 6 R/plot.PARALLEL.R | 10 R/plot.SCREE.R |only R/print.BARTLETT.R | 6 R/print.COMPARE.R | 4 R/print.EFA.R | 48 - R/print.KMO.R | 25 R/print.LOADINGS.R | 8 R/print.N_FACTORS.R | 28 R/print.OMEGA.R | 4 R/print.SCREE.R |only R/print.SL.R | 3 R/print.SLLOADINGS.R | 8 README.md | 94 +- build/vignette.rds |binary inst/CITATION |only inst/doc/EFAtools.R | 8 inst/doc/EFAtools.Rmd | 18 inst/doc/EFAtools.html | 1006 ++++++++++++++++--------------- inst/doc/Replicate_SPSS_psych.R |only inst/doc/Replicate_SPSS_psych.Rmd |only inst/doc/Replicate_SPSS_psych.html |only man/COMPARE.Rd | 4 man/EFA.Rd | 69 +- man/EFAtools-package.Rd | 8 man/FACTOR_SCORES.Rd |only man/HULL.Rd | 2 man/N_FACTORS.Rd | 49 - man/OMEGA.Rd | 67 +- man/PARALLEL.Rd | 2 man/SCREE.Rd |only man/SL.Rd | 37 - man/dot-factor_corres.Rd | 9 man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-5-2.png |only man/figures/README-unnamed-chunk-5-3.png |only man/figures/README-unnamed-chunk-5-4.png |only man/plot.SCREE.Rd |only man/print.N_FACTORS.Rd | 2 man/print.SCREE.Rd |only src/factor_corres.cpp | 12 src/paf_iter.cpp | 1 src/parallel.cpp | 1 tests/testthat/test-BARTLETT.R | 6 tests/testthat/test-COMPARE.R |only tests/testthat/test-EFA.R | 66 +- tests/testthat/test-EKC.R | 5 tests/testthat/test-FACTOR_SCORES.R |only tests/testthat/test-HULL.R | 42 + tests/testthat/test-KGC.R | 6 tests/testthat/test-KMO.R | 15 tests/testthat/test-ML.R | 31 tests/testthat/test-N_FACTORS.R | 19 tests/testthat/test-OMEGA_helper.R | 57 + tests/testthat/test-PAF.R | 185 ++++- tests/testthat/test-PARALLEL.R | 120 +++ tests/testthat/test-PROMAX.R | 54 - tests/testthat/test-ROTATE_OBLQ.R | 36 - tests/testthat/test-ROTATE_ORTH.R | 32 tests/testthat/test-RcppExports.R |only tests/testthat/test-SCREE.R |only tests/testthat/test-SL.R | 63 + tests/testthat/test-SMT.R | 45 - tests/testthat/test-ULS.R | 30 tests/testthat/test-VARIMAX.R | 42 - tests/testthat/test-helper.R | 66 +- vignettes/EFAtools.Rmd | 18 vignettes/Replicate_SPSS_psych.Rmd |only 97 files changed, 2414 insertions(+), 1524 deletions(-)
Title: Box-Cox-Type Transformations for Linear and Logistic Models with
Random Effects
Description: Box-Cox-type transformations for linear and logistic models
with random effects using non-parametric profile maximum
likelihood estimation. The main functions are optim.boxcox() for
linear models with random effects and boxcoxtype() for logistic models
with random effects.
Author: Amani Almohaimeed and Jochen Einbeck
Maintainer: Amani Almohaimeed <amani.almohaimeed@gmail.com>
Diff between boxcoxmix versions 0.21 dated 2018-09-25 and 0.28 dated 2020-09-17
DESCRIPTION | 17 +- MD5 | 31 ++-- R/BoxCoxmix.R | 351 +++++++++++++++++++++++++++-------------------- R/boxcoxmix-package.R | 68 ++++----- R/optim.boxcox.R | 190 +++++++++++++++---------- build/vignette.rds |binary inst/doc/boxcoxmix.Rnw | 8 - man/Kfind.Rd | 17 +- man/boxcoxmix-package.Rd | 6 man/boxcoxtype.Rd | 15 +- man/np.boxcoxmix.Rd | 17 +- man/optim.boxcox.Rd | 19 ++ man/summary.Rd | 15 -- man/tolfind.boxcox.Rd | 20 ++ man/vc.em.Rd | 84 +++++++---- vignettes/boxcoxmix.Rnw | 8 - vignettes/testox.png |only 17 files changed, 526 insertions(+), 340 deletions(-)
Title: Statistics Norway's Miscellaneous Tools
Description: Functions used by other packages from Statistics Norway are gathered. General data manipulation functions, and functions for hierarchical computations are included. The hierarchy specification functions are useful within statistical disclosure control.
Author: Øyvind Langsrud [aut, cre],
Bjørn-Helge Mevik [cph]
Maintainer: Øyvind Langsrud <oyl@ssb.no>
Diff between SSBtools versions 0.7.0 dated 2020-07-20 and 0.8.0 dated 2020-09-17
DESCRIPTION | 10 +++++----- MD5 | 27 +++++++++++++++++---------- NAMESPACE | 11 +++++++++++ R/Div.R |only R/Hierarchies2ModelMatrix.R | 7 ++++++- R/HierarchiesAndFormula2ModelMatrix.R | 13 +++++++++++-- R/HierarchyCompute.R | 2 +- R/MatrixPaste.R | 2 ++ R/Reduce0exact.R |only man/Hierarchies2ModelMatrix.Rd | 3 +++ man/HierarchiesAndFormula2ModelMatrix.Rd | 6 ++++++ man/HierarchyCompute.Rd | 2 +- man/MakeFreq.Rd |only man/Reduce0exact.Rd |only man/RoundWhole.Rd |only man/UniqueSeq.Rd |only tests/testthat/test-HierarchyCompute.R | 4 ++++ tests/testthat/test-Reduce0exact.R |only 18 files changed, 67 insertions(+), 20 deletions(-)
Title: Plot 'rpart' Models: An Enhanced Version of 'plot.rpart'
Description: Plot 'rpart' models. Extends plot.rpart() and text.rpart()
in the 'rpart' package.
Author: Stephen Milborrow
Maintainer: Stephen Milborrow <milbo@sonic.net>
Diff between rpart.plot versions 3.0.8 dated 2019-08-22 and 3.0.9 dated 2020-09-17
rpart.plot-3.0.8/rpart.plot/inst/slowtests/header.R |only rpart.plot-3.0.8/rpart.plot/inst/slowtests/test.prp.Rout.save |only rpart.plot-3.0.8/rpart.plot/man/rpart.plot.version1.Rd |only rpart.plot-3.0.9/rpart.plot/DESCRIPTION | 12 rpart.plot-3.0.9/rpart.plot/MD5 | 91 +-- rpart.plot-3.0.9/rpart.plot/NAMESPACE | 1 rpart.plot-3.0.9/rpart.plot/NEWS | 15 rpart.plot-3.0.9/rpart.plot/R/as.char.R | 15 rpart.plot-3.0.9/rpart.plot/R/check.index.R | 29 - rpart.plot-3.0.9/rpart.plot/R/dotlib.R | 2 rpart.plot-3.0.9/rpart.plot/R/layout.R | 1 rpart.plot-3.0.9/rpart.plot/R/lib.R | 159 +++-- rpart.plot-3.0.9/rpart.plot/R/node.labs.R | 16 rpart.plot-3.0.9/rpart.plot/R/palette.R | 2 rpart.plot-3.0.9/rpart.plot/R/prp.R | 56 +- rpart.plot-3.0.9/rpart.plot/R/rpart.model.frame.R | 4 rpart.plot-3.0.9/rpart.plot/R/rpart.rules.R | 2 rpart.plot-3.0.9/rpart.plot/inst/doc/index.html | 7 rpart.plot-3.0.9/rpart.plot/inst/doc/prp.pdf |binary rpart.plot-3.0.9/rpart.plot/inst/slowtests/make.bat | 2 rpart.plot-3.0.9/rpart.plot/inst/slowtests/rpart.report.bat | 2 rpart.plot-3.0.9/rpart.plot/inst/slowtests/test.describe.col.R | 4 rpart.plot-3.0.9/rpart.plot/inst/slowtests/test.describe.col.Rout.save | 20 rpart.plot-3.0.9/rpart.plot/inst/slowtests/test.describe.col.bat | 2 rpart.plot-3.0.9/rpart.plot/inst/slowtests/test.imports.Rout.save | 2 rpart.plot-3.0.9/rpart.plot/inst/slowtests/test.imports.bat | 2 rpart.plot-3.0.9/rpart.plot/inst/slowtests/test.na.Rout.save | 2 rpart.plot-3.0.9/rpart.plot/inst/slowtests/test.na.bat | 2 rpart.plot-3.0.9/rpart.plot/inst/slowtests/test.palette.R | 220 ++++---- rpart.plot-3.0.9/rpart.plot/inst/slowtests/test.palette.Rout.save | 266 +++++----- rpart.plot-3.0.9/rpart.plot/inst/slowtests/test.palette.bat | 2 rpart.plot-3.0.9/rpart.plot/inst/slowtests/test.prolog.R | 13 rpart.plot-3.0.9/rpart.plot/inst/slowtests/test.rpart.plot.R | 37 - rpart.plot-3.0.9/rpart.plot/inst/slowtests/test.rpart.plot.Rout.save | 174 +++--- rpart.plot-3.0.9/rpart.plot/inst/slowtests/test.rpart.plot.bat | 2 rpart.plot-3.0.9/rpart.plot/inst/slowtests/test.rpart.rules.R | 6 rpart.plot-3.0.9/rpart.plot/inst/slowtests/test.rpart.rules.Rout.save | 109 ++-- rpart.plot-3.0.9/rpart.plot/inst/slowtests/test.rpart.rules.bat | 2 rpart.plot-3.0.9/rpart.plot/inst/slowtests/test.type5.Rout.save | 16 rpart.plot-3.0.9/rpart.plot/inst/slowtests/test.type5.bat | 2 rpart.plot-3.0.9/rpart.plot/inst/slowtests/usersplits.bat | 2 rpart.plot-3.0.9/rpart.plot/inst/slowtests/vignette.Rout.save | 2 rpart.plot-3.0.9/rpart.plot/inst/slowtests/vignette.bat | 2 rpart.plot-3.0.9/rpart.plot/inst/slowtests/webpage.figs.bat | 2 rpart.plot-3.0.9/rpart.plot/man/prp.Rd | 39 - rpart.plot-3.0.9/rpart.plot/man/ptitanic.Rd | 2 rpart.plot-3.0.9/rpart.plot/man/rpart.plot.Rd | 36 - rpart.plot-3.0.9/rpart.plot/man/rpart.predict.Rd | 6 48 files changed, 717 insertions(+), 673 deletions(-)
Title: Random Number Generation for Generalized Poisson Distribution
Description: Generation of univariate and multivariate data that follow the generalized Poisson distribution. The details of the univariate part are explained in Demirtas (2017), and the multivariate part is an extension of the correlated Poisson data generation routine that was introduced in Yahav and Shmueli (2012).
Author: Hesen Li, Ruizhe Chen, Hai Nguyen, Yu-che Chung, Ran Gao, Hakan Demirtas
Maintainer: Ruizhe Chen <rchen18@uic.edu>
Diff between RNGforGPD versions 1.0.2 dated 2019-06-26 and 1.0.3 dated 2020-09-17
RNGforGPD-1.0.2/RNGforGPD/inst/doc/RNGfroGPD_vignette.R |only RNGforGPD-1.0.2/RNGforGPD/inst/doc/RNGfroGPD_vignette.Rmd |only RNGforGPD-1.0.2/RNGforGPD/inst/doc/RNGfroGPD_vignette.html |only RNGforGPD-1.0.2/RNGforGPD/tests |only RNGforGPD-1.0.2/RNGforGPD/vignettes/RNGfroGPD_vignette.Rmd |only RNGforGPD-1.0.3/RNGforGPD/DESCRIPTION | 12 +- RNGforGPD-1.0.3/RNGforGPD/MD5 | 45 +++----- RNGforGPD-1.0.3/RNGforGPD/R/CmatStarGpois.R | 43 +++++-- RNGforGPD-1.0.3/RNGforGPD/R/ComputeCorrGpois.R | 22 ++- RNGforGPD-1.0.3/RNGforGPD/R/CorrNNGpois.R | 15 +- RNGforGPD-1.0.3/RNGforGPD/R/GenMVGPois.R | 18 +-- RNGforGPD-1.0.3/RNGforGPD/R/GenUniGpois.R | 32 ++--- RNGforGPD-1.0.3/RNGforGPD/R/QuantileGpois.R | 72 +++++-------- RNGforGPD-1.0.3/RNGforGPD/R/RNGforGPD-package.R | 4 RNGforGPD-1.0.3/RNGforGPD/R/ValidCorrGpois.R | 23 ++-- RNGforGPD-1.0.3/RNGforGPD/build/vignette.rds |binary RNGforGPD-1.0.3/RNGforGPD/inst/doc/RNGforGPD.R |only RNGforGPD-1.0.3/RNGforGPD/inst/doc/RNGforGPD.Rmd |only RNGforGPD-1.0.3/RNGforGPD/inst/doc/RNGforGPD.html |only RNGforGPD-1.0.3/RNGforGPD/man/CmatStarGpois.Rd | 11 + RNGforGPD-1.0.3/RNGforGPD/man/ComputeCorrGpois.Rd | 15 +- RNGforGPD-1.0.3/RNGforGPD/man/CorrNNGpois.Rd | 11 + RNGforGPD-1.0.3/RNGforGPD/man/GenMVGpois.Rd | 20 ++- RNGforGPD-1.0.3/RNGforGPD/man/GenUniGpois.Rd | 15 +- RNGforGPD-1.0.3/RNGforGPD/man/QuantileGpois.Rd | 19 +-- RNGforGPD-1.0.3/RNGforGPD/man/RNGforGPD-package.Rd | 4 RNGforGPD-1.0.3/RNGforGPD/man/ValidCorrGpois.Rd | 12 +- RNGforGPD-1.0.3/RNGforGPD/vignettes/RNGforGPD.Rmd |only 28 files changed, 211 insertions(+), 182 deletions(-)
Title: Latin Hypercube Designs (LHDs) Algorithms
Description: Contains different algorithms for efficient Latin Hypercube Designs (LHDs) with flexible sizes. Our package is comprehensive since it is capable of generating maximin distance LHDs, maximum projection LHDs, and nearly orthogonal LHDs. Documentation for each algorithm includes useful information and explanation along with corresponding references. This package is particularly useful in the area of Design and Analysis of Experiments (DAE). More specifically, design of computer experiments.
Author: Hongzhi Wang, Qian Xiao, Abhyuday Mandal
Maintainer: Hongzhi Wang <hw34508@uga.edu>
Diff between LHD versions 1.1.0 dated 2020-06-02 and 1.2.0 dated 2020-09-17
DESCRIPTION | 12 MD5 | 88 +++-- NAMESPACE | 7 NEWS.md | 23 + R/AvgAbsCor.R | 13 R/FastMmLHD.R |only R/GA.R | 101 +++++- R/GLP.R |only R/LOO.R |only R/LPWT.R |only R/LaPSO.R | 114 +++++-- R/MWT.R |only R/MaxAbsCor.R | 11 R/MaxProCriterion.R | 9 R/OA2LHD.R | 9 R/OASA.R | 111 +++++-- R/OLHD1998.R |only R/SA.R | 112 +++++-- R/SA2008.R | 117 +++++-- R/SLHD.R | 224 ++++++++++++-- R/WT.R |only R/dij.R | 17 - R/exchange.R | 10 R/phi_p.R | 15 R/rLHD.R | 10 build/vignette.rds |binary inst/doc/Vignette_for_LHD.R | 32 ++ inst/doc/Vignette_for_LHD.Rmd | 42 ++ inst/doc/Vignette_for_LHD.html | 505 +++++++++++++++++++++------------ man/AvgAbsCor.Rd | 16 - man/FastMmLHD.Rd |only man/GA.Rd | 42 +- man/GLP.Rd |only man/LOO.Rd |only man/LPWT.Rd |only man/LaPSO.Rd | 53 +-- man/MWT.Rd |only man/MaxAbsCor.Rd | 14 man/MaxProCriterion.Rd | 12 man/OA2LHD.Rd | 12 man/OASA.Rd | 41 -- man/OLHD1998.Rd |only man/SA.Rd | 40 -- man/SA2008.Rd | 46 +-- man/SLHD.Rd | 52 +-- man/WT.Rd |only man/dij.Rd | 19 - man/exchange.Rd | 12 man/phi_p.Rd | 18 - man/rLHD.Rd | 12 tests/testthat/testmyfunctions_part1.R | 35 ++ vignettes/Vignette_for_LHD.Rmd | 42 ++ 52 files changed, 1318 insertions(+), 730 deletions(-)
Title: Identify Global Objects in R Expressions
Description: Identifies global ("unknown" or "free") objects in R expressions
by code inspection using various strategies, e.g. conservative or liberal.
The objective of this package is to make it as simple as possible to
identify global objects for the purpose of exporting them in distributed
compute environments.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between globals versions 0.12.5 dated 2019-12-07 and 0.13.0 dated 2020-09-17
DESCRIPTION | 8 +- MD5 | 29 ++++---- NEWS | 52 +++++++++++++- R/cleanup.R | 91 +++++++++++++++++++------ R/findGlobals.R | 176 ++++++++++++++++++++++++++++++++++--------------- R/globalsOf.R | 35 ++++++--- R/utils.R | 27 +++++++ inst/WORDLIST | 8 ++ man/cleanup.Globals.Rd | 2 man/globalsOf.Rd | 8 ++ tests/cleanup.R |only tests/dotdotdot.R | 74 +++++++++----------- tests/findGlobals.R | 8 ++ tests/formulas.R | 40 +++++++++++ tests/globalsOf.R | 14 ++- tests/incl/globals.R | 1 16 files changed, 418 insertions(+), 155 deletions(-)
Title: Geographic Information of Uruguay
Description: The toolbox have functions to load and process geographic information for Uruguay.
And extra-function to get address coordinates and orthophotos through the uruguayan 'IDE' API <https://www.gub.uy/infraestructura-datos-espaciales/tramites-y-servicios/servicios/servicio-direcciones-geograficas>.
Author: Richard Detomasi [aut, cre] (<https://orcid.org/0000-0002-6725-0261>),
Ministerio de Desarrollo Social, Uruguay (MIDES) [dtc],
Infraestrutura de Datos Espaciales, Uruguay (IDE) [dtc],
Servicio Geográfico Militar, Uruguay (SGM) [dtc],
Ministerio de Transporte y Obras Públicas, Uruguay (MTOP) [dtc],
Instituto Nacional de Estadística, Uruguay (INE) [dtc],
Instituto Geográfico Militar, Uruguay (IGM) [dtc],
Ministerio de Vivienda, Ordenamiento Territorial y Medio Ambiente,
Uruguay (MVOTMA) [dtc]
Maintainer: Richard Detomasi <richard.detomasi@gmail.com>
Diff between geouy versions 0.2.2 dated 2020-08-01 and 0.2.3 dated 2020-09-17
DESCRIPTION | 17 ++++++------ MD5 | 54 +++++++++++++++++++++------------------ NAMESPACE | 8 +++++ NEWS.md | 9 ++++++ R/add_geom.R |only R/data.R | 17 ++++++++++-- R/geocode_ide_uy.R | 1 R/geouy.R | 4 -- R/load_geouy.R | 6 ---- R/plot_geouy.R | 35 ++++++++++++++----------- R/utils.R | 7 +++-- R/where_uy.R |only R/which_uy.R | 5 --- README.md | 69 +++++++++++++++++++++++++++++++++++++------------- data/metadata.rda |binary data/metadata_wms.rda |only inst/CITATION | 2 - inst/doc/geouy.html | 4 +- man/add_geom.Rd |only man/geocode_ide_uy.Rd | 64 ++++++++++++++++++++++++++-------------------- man/is.uy32721.Rd | 6 ++++ man/is.uy4326.Rd | 6 ++++ man/is.uy5381.Rd | 8 +++++ man/is.uy5382.Rd | 2 - man/load_geouy.Rd | 66 ++++++++++++++++++++++++++--------------------- man/loc_agr_ine.Rd | 6 ++++ man/metadata.Rd | 6 ++++ man/metadata_wms.Rd |only man/plot_geouy.Rd | 1 man/where_uy.Rd |only man/which_uy.Rd | 68 +++++++++++++++++++++++++++---------------------- 31 files changed, 299 insertions(+), 172 deletions(-)