Title: Simultaneous Penalized Linear Mixed Effects Models
Description: Contains functions that fit linear mixed-effects models
for high-dimensional data (p>>n) with penalty for both the fixed effects and random effects for variable selection.
The details of the algorithm can be found in Luoying Yang PhD thesis (available soon). The algorithm implementation
is based on the R package 'lmmlasso'.
Author: Luoying Yang, Tong Tong Wu
Maintainer: Luoying Yang <lyang19@u.rochester.edu>
Diff between splmm versions 1.0 dated 2020-09-21 and 1.1 dated 2020-09-21
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- R/RcppExports.R | 46 +++++++++++++++++++++++----------------------- build/partial.rdb |binary data/cognitive.rda |binary man/cognitive.Rd | 10 +++++----- man/plot.splmm.Rd | 7 ++++--- man/plot3D.splmm.Rd | 7 ++++--- man/print.splmm.Rd | 7 ++++--- man/splmm.Rd | 8 ++++---- man/splmmTuning.Rd | 7 ++++--- src/splmm_rcpp.cpp | 12 ++++++------ 12 files changed, 69 insertions(+), 65 deletions(-)
Title: The Metropolis Algorithm
Description: Learning and using the Metropolis algorithm for
Bayesian fitting of a generalized linear model. The package vignette
includes examples of hand-coding a logistic model using several
variants of the Metropolis algorithm. The package also contains R
functions for simulating posterior distributions of Bayesian
generalized linear model parameters using guided, adaptive,
guided-adaptive and random walk Metropolis algorithms. The random walk
Metropolis algorithm was originally described in Metropolis et al
(1953); <doi:10.1063/1.1699114>.
Author: Alexander Keil [aut, cre]
Maintainer: Alexander Keil <akeil@unc.edu>
Diff between metropolis versions 0.1.5 dated 2020-01-23 and 0.1.8 dated 2020-09-21
DESCRIPTION | 14 - MD5 | 35 ++- NAMESPACE | 1 NEWS.md | 13 + R/base.R | 353 +++++++++++++++++++++++++------------- R/conversions.R |only R/data.R | 2 R/loglikelihoods.R |only R/transformations.R |only build/partial.rdb |only build/vignette.rds |binary inst/doc/metropolis-vignette.html | 6 man/as.mcmc.metropolis.samples.Rd | 8 man/expit.Rd | 6 man/logistic_ll.Rd | 2 man/magfields.Rd | 14 - man/metropolis.control.Rd | 6 man/metropolis_glm.Rd | 36 +-- man/normal_ll.Rd | 2 man/summary.metropolis.samples.Rd | 16 - tests/test_transformations.R |only 21 files changed, 324 insertions(+), 190 deletions(-)
Title: An R Package for Text Analysis
Description: A set of tools to analyze texts. Includes, amongst others, functions for automatic language detection, hyphenation, several indices of lexical diversity (e.g., type
token ratio, HD-D/vocd-D, MTLD) and readability (e.g., Flesch, SMOG, LIX, Dale-Chall). Basic import functions for language corpora are also provided, to enable
frequency analyses (supports Celex and Leipzig Corpora Collection file formats) and measures like tf-idf. Note: For full functionality a local installation of
TreeTagger is recommended. It is also recommended to not load this package directly, but by loading one of the available language support packages from the
'l10n' repository <https://undocumeantit.github.io/repos/l10n/>. 'koRpus' also includes a plugin for the R GUI and IDE RKWard, providing graphical dialogs for
its basic features. The respective R package 'rkward' cannot be installed directly from a repository, as it is a part of RKWard. To make full use of this
feature, please install RKWard from <https://rkward.kde.org> (plugins are detected automatically). Due to some restrictions on CRAN, the full package sources
are only available from the project homepage. To ask for help, report bugs, request features, or discuss the development of the package, please subscribe to
the koRpus-dev mailing list (<https://korpusml.reaktanz.de>).
Author: Meik Michalke [aut, cre],
Earl Brown [ctb],
Alberto Mirisola [ctb],
Alexandre Brulet [ctb],
Laura Hauser [ctb]
Maintainer: Meik Michalke <meik.michalke@hhu.de>
Diff between koRpus versions 0.11-5 dated 2018-10-28 and 0.13-1 dated 2020-09-21
koRpus-0.11-5/koRpus/R/01_class_01_kRp.tagged.R |only koRpus-0.11-5/koRpus/R/01_class_03_kRp.txt.freq.R |only koRpus-0.11-5/koRpus/R/01_class_04_kRp.txt.trans.R |only koRpus-0.11-5/koRpus/R/01_class_05_kRp.analysis.R |only koRpus-0.11-5/koRpus/R/01_class_06_kRp.corp.freq.R |only koRpus-0.11-5/koRpus/R/01_class_09_kRp.lang.R |only koRpus-0.11-5/koRpus/R/01_class_10_kRp.readability.R |only koRpus-0.11-5/koRpus/R/02_method_kRp.taggedText.R |only koRpus-0.11-5/koRpus/R/02_method_plot.kRp.tagged.R |only koRpus-0.11-5/koRpus/R/02_method_show.kRp.taggedText.R |only koRpus-0.11-5/koRpus/R/02_method_summary.kRp.tagged.R |only koRpus-0.11-5/koRpus/R/02_method_summary.kRp.txt.freq.R |only koRpus-0.11-5/koRpus/R/02_method_text.transform.R |only koRpus-0.11-5/koRpus/R/jumbleWords.R |only koRpus-0.11-5/koRpus/R/kRp.filter.wclass.R |only koRpus-0.11-5/koRpus/R/kRp.text.paste.R |only koRpus-0.11-5/koRpus/R/koRpus-internal.roxy.all.R |only koRpus-0.11-5/koRpus/R/read.tagged.R |only koRpus-0.11-5/koRpus/R/tokenize.R |only koRpus-0.11-5/koRpus/R/treetag.R |only koRpus-0.11-5/koRpus/man/jumbleWords.Rd |only koRpus-0.11-5/koRpus/man/kRp.analysis-class.Rd |only koRpus-0.11-5/koRpus/man/kRp.filter.wclass.Rd |only koRpus-0.11-5/koRpus/man/kRp.tagged-class.Rd |only koRpus-0.11-5/koRpus/man/kRp.taggedText-methods.Rd |only koRpus-0.11-5/koRpus/man/kRp.text.analysis.Rd |only koRpus-0.11-5/koRpus/man/kRp.text.paste.Rd |only koRpus-0.11-5/koRpus/man/kRp.txt.freq-class.Rd |only koRpus-0.11-5/koRpus/man/kRp.txt.trans-class.Rd |only koRpus-0.11-5/koRpus/man/read.tagged.Rd |only koRpus-0.11-5/koRpus/man/tokenize.Rd |only koRpus-0.11-5/koRpus/man/treetag.Rd |only koRpus-0.13-1/koRpus/ChangeLog | 145 koRpus-0.13-1/koRpus/DESCRIPTION | 107 koRpus-0.13-1/koRpus/MD5 | 309 +- koRpus-0.13-1/koRpus/NAMESPACE | 59 koRpus-0.13-1/koRpus/R/00_environment.R | 2 koRpus-0.13-1/koRpus/R/01_class_01_kRp.text.R |only koRpus-0.13-1/koRpus/R/01_class_03_kRp.corp.freq.R |only koRpus-0.13-1/koRpus/R/01_class_04_kRp.lang.R |only koRpus-0.13-1/koRpus/R/01_class_05_kRp.readability.R |only koRpus-0.13-1/koRpus/R/01_class_81_kRp.connection_union.R |only koRpus-0.13-1/koRpus/R/01_class_90_deprecated_classes.R |only koRpus-0.13-1/koRpus/R/02_method_cTest.R | 36 koRpus-0.13-1/koRpus/R/02_method_clozeDelete.R | 62 koRpus-0.13-1/koRpus/R/02_method_correct.R | 70 koRpus-0.13-1/koRpus/R/02_method_docTermMatrix.R |only koRpus-0.13-1/koRpus/R/02_method_filterByClass.R |only koRpus-0.13-1/koRpus/R/02_method_freq.analysis.R | 92 koRpus-0.13-1/koRpus/R/02_method_get_set_kRp.text.R |only koRpus-0.13-1/koRpus/R/02_method_hyphen.R | 66 koRpus-0.13-1/koRpus/R/02_method_jumbleWords.R |only koRpus-0.13-1/koRpus/R/02_method_lex.div.R | 139 koRpus-0.13-1/koRpus/R/02_method_pasteText.R |only koRpus-0.13-1/koRpus/R/02_method_plot.kRp.text.R |only koRpus-0.13-1/koRpus/R/02_method_query.R | 192 - koRpus-0.13-1/koRpus/R/02_method_read.corp.custom.R | 105 koRpus-0.13-1/koRpus/R/02_method_readTagged.R |only koRpus-0.13-1/koRpus/R/02_method_readability.R | 253 - koRpus-0.13-1/koRpus/R/02_method_show.kRp.TTR.R | 240 - koRpus-0.13-1/koRpus/R/02_method_show.kRp.corp.freq.R | 4 koRpus-0.13-1/koRpus/R/02_method_show.kRp.lang.R | 4 koRpus-0.13-1/koRpus/R/02_method_show.kRp.readability.R | 437 +- koRpus-0.13-1/koRpus/R/02_method_show.kRp.text.R |only koRpus-0.13-1/koRpus/R/02_method_split_by_doc_id.R |only koRpus-0.13-1/koRpus/R/02_method_summary.kRp.TTR.R | 58 koRpus-0.13-1/koRpus/R/02_method_summary.kRp.lang.R | 16 koRpus-0.13-1/koRpus/R/02_method_summary.kRp.readability.R | 545 +-- koRpus-0.13-1/koRpus/R/02_method_summary.kRp.text.R |only koRpus-0.13-1/koRpus/R/02_method_textTransform.R |only koRpus-0.13-1/koRpus/R/02_method_tokenize.R |only koRpus-0.13-1/koRpus/R/02_method_treetag.R |only koRpus-0.13-1/koRpus/R/02_method_types_tokens.R | 29 koRpus-0.13-1/koRpus/R/guess.lang.R | 4 koRpus-0.13-1/koRpus/R/kRp.POS.tags.R | 54 koRpus-0.13-1/koRpus/R/kRp.cluster.R | 12 koRpus-0.13-1/koRpus/R/kRp.text.analysis.R | 85 koRpus-0.13-1/koRpus/R/koRpus-internal.R | 384 -- koRpus-0.13-1/koRpus/R/koRpus-internal.freq.analysis.R | 198 + koRpus-0.13-1/koRpus/R/koRpus-internal.lexdiv.formulae.R | 9 koRpus-0.13-1/koRpus/R/koRpus-internal.rdb.formulae.R | 1489 ++++------ koRpus-0.13-1/koRpus/R/koRpus-internal.rdb.params.grades.R | 516 +++ koRpus-0.13-1/koRpus/R/koRpus-internal.read.corp.custom.R | 224 - koRpus-0.13-1/koRpus/R/koRpus-package.R | 6 koRpus-0.13-1/koRpus/R/read.BAWL.R | 4 koRpus-0.13-1/koRpus/R/read.corp.LCC.R | 4 koRpus-0.13-1/koRpus/R/readability.num.R | 62 koRpus-0.13-1/koRpus/R/textFeatures.R | 13 koRpus-0.13-1/koRpus/R/wrapper_functions_lex.div.R | 48 koRpus-0.13-1/koRpus/R/wrapper_functions_readability.R | 88 koRpus-0.13-1/koRpus/README.md | 27 koRpus-0.13-1/koRpus/build/partial.rdb |binary koRpus-0.13-1/koRpus/build/vignette.rds |binary koRpus-0.13-1/koRpus/inst/CITATION | 8 koRpus-0.13-1/koRpus/inst/NEWS.Rd | 171 + koRpus-0.13-1/koRpus/inst/doc/koRpus_vignette.R | 4 koRpus-0.13-1/koRpus/inst/doc/koRpus_vignette.Rmd | 24 koRpus-0.13-1/koRpus/inst/doc/koRpus_vignette.html | 594 ++- koRpus-0.13-1/koRpus/man/ARI.Rd | 2 koRpus-0.13-1/koRpus/man/C.ld.Rd | 5 koRpus-0.13-1/koRpus/man/CTTR.Rd | 5 koRpus-0.13-1/koRpus/man/DRP.Rd | 2 koRpus-0.13-1/koRpus/man/ELF.Rd | 2 koRpus-0.13-1/koRpus/man/FOG.Rd | 10 koRpus-0.13-1/koRpus/man/FORCAST.Rd | 10 koRpus-0.13-1/koRpus/man/HDD.Rd | 5 koRpus-0.13-1/koRpus/man/K.ld.Rd | 5 koRpus-0.13-1/koRpus/man/LIX.Rd | 2 koRpus-0.13-1/koRpus/man/MATTR.Rd | 5 koRpus-0.13-1/koRpus/man/MSTTR.Rd | 5 koRpus-0.13-1/koRpus/man/MTLD.Rd | 17 koRpus-0.13-1/koRpus/man/R.ld.Rd | 5 koRpus-0.13-1/koRpus/man/RIX.Rd | 2 koRpus-0.13-1/koRpus/man/S.ld.Rd | 5 koRpus-0.13-1/koRpus/man/SMOG.Rd | 10 koRpus-0.13-1/koRpus/man/TRI.Rd | 10 koRpus-0.13-1/koRpus/man/TTR.Rd | 5 koRpus-0.13-1/koRpus/man/U.ld.Rd | 5 koRpus-0.13-1/koRpus/man/available.koRpus.lang.Rd | 3 koRpus-0.13-1/koRpus/man/bormuth.Rd | 2 koRpus-0.13-1/koRpus/man/cTest-methods.Rd | 21 koRpus-0.13-1/koRpus/man/clozeDelete-methods.Rd | 15 koRpus-0.13-1/koRpus/man/coleman.Rd | 17 koRpus-0.13-1/koRpus/man/coleman.liau.Rd | 12 koRpus-0.13-1/koRpus/man/correct-methods.Rd | 34 koRpus-0.13-1/koRpus/man/dale.chall.Rd | 10 koRpus-0.13-1/koRpus/man/danielson.bryan.Rd | 10 koRpus-0.13-1/koRpus/man/dickes.steiwer.Rd | 10 koRpus-0.13-1/koRpus/man/docTermMatrix.Rd |only koRpus-0.13-1/koRpus/man/farr.jenkins.paterson.Rd | 10 koRpus-0.13-1/koRpus/man/filterByClass-methods.Rd |only koRpus-0.13-1/koRpus/man/flesch.Rd | 10 koRpus-0.13-1/koRpus/man/flesch.kincaid.Rd | 10 koRpus-0.13-1/koRpus/man/freq.analysis-methods.Rd | 75 koRpus-0.13-1/koRpus/man/fucks.Rd | 2 koRpus-0.13-1/koRpus/man/guess.lang.Rd | 13 koRpus-0.13-1/koRpus/man/harris.jacobson.Rd | 19 koRpus-0.13-1/koRpus/man/hyphen-methods.Rd | 73 koRpus-0.13-1/koRpus/man/install.koRpus.lang.Rd | 7 koRpus-0.13-1/koRpus/man/jumbleWords-methods.Rd |only koRpus-0.13-1/koRpus/man/kRp.POS.tags.Rd | 13 koRpus-0.13-1/koRpus/man/kRp.corp.freq-class.Rd | 4 koRpus-0.13-1/koRpus/man/kRp.lang-class.Rd | 2 koRpus-0.13-1/koRpus/man/kRp.readability-class.Rd | 4 koRpus-0.13-1/koRpus/man/kRp.text-class.Rd |only koRpus-0.13-1/koRpus/man/kRp.text_get-methods.Rd |only koRpus-0.13-1/koRpus/man/koRpus-deprecated.Rd | 114 koRpus-0.13-1/koRpus/man/koRpus-package.Rd | 6 koRpus-0.13-1/koRpus/man/lex.div-methods.Rd | 116 koRpus-0.13-1/koRpus/man/lex.div.num.Rd | 9 koRpus-0.13-1/koRpus/man/linsear.write.Rd | 10 koRpus-0.13-1/koRpus/man/maas.Rd | 5 koRpus-0.13-1/koRpus/man/nWS.Rd | 17 koRpus-0.13-1/koRpus/man/pasteText-methods.Rd |only koRpus-0.13-1/koRpus/man/plot-methods.Rd | 14 koRpus-0.13-1/koRpus/man/query-methods.Rd | 58 koRpus-0.13-1/koRpus/man/read.BAWL.Rd | 2 koRpus-0.13-1/koRpus/man/read.corp.LCC.Rd | 16 koRpus-0.13-1/koRpus/man/read.corp.celex.Rd | 9 koRpus-0.13-1/koRpus/man/read.corp.custom-methods.Rd | 53 koRpus-0.13-1/koRpus/man/readTagged-methods.Rd |only koRpus-0.13-1/koRpus/man/readability-methods.Rd | 232 - koRpus-0.13-1/koRpus/man/readability.num.Rd | 26 koRpus-0.13-1/koRpus/man/segment.optimizer.Rd | 3 koRpus-0.13-1/koRpus/man/show-methods.Rd | 6 koRpus-0.13-1/koRpus/man/spache.Rd | 10 koRpus-0.13-1/koRpus/man/split_by_doc_id.Rd |only koRpus-0.13-1/koRpus/man/strain.Rd | 5 koRpus-0.13-1/koRpus/man/summary-methods.Rd | 34 koRpus-0.13-1/koRpus/man/textFeatures.Rd | 3 koRpus-0.13-1/koRpus/man/textTransform-methods.Rd | 98 koRpus-0.13-1/koRpus/man/tokenize-methods.Rd |only koRpus-0.13-1/koRpus/man/traenkle.bailer.Rd | 11 koRpus-0.13-1/koRpus/man/treetag-methods.Rd |only koRpus-0.13-1/koRpus/man/tuldava.Rd | 10 koRpus-0.13-1/koRpus/man/types.tokens-methods.Rd | 64 koRpus-0.13-1/koRpus/man/wheeler.smith.Rd | 2 koRpus-0.13-1/koRpus/tests/testthat/sample_text_RDRPOSTagged_df_dput.txt |only koRpus-0.13-1/koRpus/tests/testthat/sample_text_RDRPOSTagged_kRp_dput.txt |only koRpus-0.13-1/koRpus/tests/testthat/sample_text_tokenized_dput.txt | 1294 ++++---- koRpus-0.13-1/koRpus/tests/testthat/sample_text_tokenized_dput_old.txt | 4 koRpus-0.13-1/koRpus/tests/testthat/sample_text_tokenized_no_desc_dput.txt | 1211 +++----- koRpus-0.13-1/koRpus/tests/testthat/sample_text_treetagged.txt |only koRpus-0.13-1/koRpus/tests/testthat/sample_text_treetagged_dput.txt |only koRpus-0.13-1/koRpus/tests/testthat/test_tokenizing_POS_tagging.R | 457 ++- koRpus-0.13-1/koRpus/tests/testthat/tokenized_single_token_dput.txt | 134 koRpus-0.13-1/koRpus/vignettes/koRpus_vignette.Rmd | 24 koRpus-0.13-1/koRpus/vignettes/sample_text_treetagged_dput.txt | 979 +++--- 188 files changed, 7014 insertions(+), 5513 deletions(-)
Title: Read and Write 'FreeSurfer' Neuroimaging File Formats
Description: Provides functions to read and write neuroimaging data in various file formats, with a focus on 'FreeSurfer' <http://freesurfer.net/> formats. This includes, but is not limited to, the following file formats: 1) MGH/MGZ format files, which can contain multi-dimensional images or other data. Typically they contain time-series of three-dimensional brain scans acquired by magnetic resonance imaging (MRI). They can also contain vertex-wise measures of surface morphometry data. The MGH format is named after the Massachusetts General Hospital, and the MGZ format is a compressed version of the same format. 2) 'FreeSurfer' morphometry data files in binary 'curv' format. These contain vertex-wise surface measures, i.e., one scalar value for each vertex of a brain surface mesh. These are typically values like the cortical thickness or brain surface area at each vertex. 3) Annotation file format. This contains a brain surface parcellation derived from a cortical atlas. 4) Surface file format. Contains a brain surface mesh, given by a list of vertices and a list of faces.
Author: Tim Schäfer [aut, cre] (<https://orcid.org/0000-0002-3683-8070>)
Maintainer: Tim Schäfer <ts+code@rcmd.org>
Diff between freesurferformats versions 0.1.12 dated 2020-08-26 and 0.1.13 dated 2020-09-21
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More information about freesurferformats at CRAN
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Title: Superfast Likelihood Inference for Stationary Gaussian Time
Series
Description: Likelihood evaluations for stationary Gaussian time series are typically obtained via the Durbin-Levinson algorithm, which scales as O(n^2) in the number of time series observations. This package provides a "superfast" O(n log^2 n) algorithm written in C++, crossing over with Durbin-Levinson around n = 300. Efficient implementations of the score and Hessian functions are also provided, leading to superfast versions of inference algorithms such as Newton-Raphson and Hamiltonian Monte Carlo. The C++ code provides a Toeplitz matrix class packaged as a header-only library, to simplify low-level usage in other packages and outside of R.
Author: Yun Ling [aut],
Martin Lysy [aut, cre]
Maintainer: Martin Lysy <mlysy@uwaterloo.ca>
Diff between SuperGauss versions 1.0.2 dated 2020-02-27 and 2.0.0 dated 2020-09-21
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Title: A Monte Carlo Based Heterogeneity Test for Meta-Analysis
Description: Implements a Monte Carlo Based Heterogeneity Test for standardized mean differences (d), Fisher-transformed Pearson's correlations (r), and natural-logarithm-transformed odds ratio (OR) in Meta-Analysis Studies. Depending on the presence of moderators, this Monte Carlo Based Test can be implemented in the random or mixed-effects model. This package uses rma() function from the R package 'metafor' to obtain parameter estimates and likelihood, so installation of R package 'metafor' is required. This approach refers to the studies of Hedges (1981) <doi:10.3102/10769986006002107>, Hedges & Olkin (1985, ISBN:978-0123363800), Silagy, Lancaster, Stead, Mant, & Fowler (2004) <doi:10.1002/14651858.CD000146.pub2>, Viechtbauer (2010) <doi:10.18637/jss.v036.i03>, and Zuckerman (1994, ISBN:978-0521432009).
Author: Han Du [aut],
Ge Jiang [aut, cre],
Zijun Ke [ctb]
Maintainer: Ge Jiang <gejiang2@illinois.edu>
Diff between mc.heterogeneity versions 0.1.1 dated 2020-06-24 and 0.1.2 dated 2020-09-21
DESCRIPTION | 10 - MD5 | 24 ++-- R/mc.d.R | 2 R/mc.fcor.R | 2 R/mc.lnOR.R | 4 build/vignette.rds |binary inst/doc/Supplementary_Materials.R | 8 - inst/doc/Supplementary_Materials.Rmd | 13 -- inst/doc/Supplementary_Materials.html | 184 +++++++++++++++++----------------- man/mc.d.Rd | 2 man/mc.fcor.Rd | 2 man/mc.lnOR.Rd | 4 vignettes/Supplementary_Materials.Rmd | 13 -- 13 files changed, 128 insertions(+), 140 deletions(-)
More information about mc.heterogeneity at CRAN
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Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-09-04 1.0-3
2019-06-27 1.0-2
2019-05-01 1.0-1
Title: Enterprise Streamlined 'Shiny' Application Framework
Description: An enterprise-targeted scalable and UI-standardized 'shiny' framework
including a variety of developer convenience functions with the goal of both
streamlining robust application development while assisting with creating a
consistent user experience regardless of application or developer.
Author: Constance Brett [aut, cre],
Isaac Neuhaus [aut] (canvasXpress JavaScript Library Maintainer),
Ger Inberg [ctb],
Bristol-Meyers Squibb (BMS) [cph]
Maintainer: Constance Brett <connie@aggregate-genius.com>
Diff between periscope versions 0.5.1 dated 2020-07-03 and 0.5.2 dated 2020-09-21
periscope-0.5.1/periscope/tests/testthat/sample_app_no_sidebar/program/ui_sidebar.R |only periscope-0.5.2/periscope/DESCRIPTION | 16 periscope-0.5.2/periscope/MD5 | 58 + periscope-0.5.2/periscope/NEWS.md | 4 periscope-0.5.2/periscope/R/convert_template.R | 10 periscope-0.5.2/periscope/R/downloadFile.R | 19 periscope-0.5.2/periscope/build/vignette.rds |binary periscope-0.5.2/periscope/inst/doc/downloadFile-module.html | 110 ++- periscope-0.5.2/periscope/inst/doc/downloadablePlot-module.html | 76 +- periscope-0.5.2/periscope/inst/doc/downloadableTable-module.html | 92 +-- periscope-0.5.2/periscope/inst/doc/new-application.html | 298 +++++----- periscope-0.5.2/periscope/tests/testthat/sample_app/program/fxn/plots.R | 1 periscope-0.5.2/periscope/tests/testthat/sample_app_both_sidebar |only periscope-0.5.2/periscope/tests/testthat/sample_app_no_sidebar/program/fxn/plots.R | 1 periscope-0.5.2/periscope/tests/testthat/sample_app_no_sidebar/program/server_local.R | 11 periscope-0.5.2/periscope/tests/testthat/sample_app_r_sidebar |only periscope-0.5.2/periscope/tests/testthat/test_convert_application.R | 55 + periscope-0.5.2/periscope/tests/testthat/test_create_new_application.R | 19 periscope-0.5.2/periscope/tests/testthat/test_ui_functions.R | 5 periscope-0.5.2/periscope/tests/testthat/test_ui_misc_functions.R | 8 20 files changed, 479 insertions(+), 304 deletions(-)
Title: Small Count Rounding of Tabular Data
Description: A statistical disclosure control tool to protect frequency tables in cases where small values are sensitive. The function PLSrounding() performs small count rounding of necessary inner cells so that all small frequencies of cross-classifications to be published (publishable cells) are rounded. This is equivalent to changing micro data since frequencies of unique combinations are changed. Thus, additivity and consistency are guaranteed. The methodology is described in Langsrud and Heldal (2018) <https://www.researchgate.net/publication/327768398_An_Algorithm_for_Small_Count_Rounding_of_Tabular_Data>.
Author: Øyvind Langsrud [aut, cre],
Johan Heldal [aut]
Maintainer: Øyvind Langsrud <oyl@ssb.no>
Diff between SmallCountRounding versions 0.4.0 dated 2019-10-17 and 0.5.0 dated 2020-09-21
SmallCountRounding-0.4.0/SmallCountRounding/R/noeFraKostraFiler.R |only SmallCountRounding-0.5.0/SmallCountRounding/DESCRIPTION | 15 SmallCountRounding-0.5.0/SmallCountRounding/MD5 | 59 +- SmallCountRounding-0.5.0/SmallCountRounding/NAMESPACE | 4 SmallCountRounding-0.5.0/SmallCountRounding/NEWS.md |only SmallCountRounding-0.5.0/SmallCountRounding/R/OldVersions.R | 54 - SmallCountRounding-0.5.0/SmallCountRounding/R/PLS2way.R | 2 SmallCountRounding-0.5.0/SmallCountRounding/R/PLSrounding.R | 16 SmallCountRounding-0.5.0/SmallCountRounding/R/RoundViaDummy.R | 186 +++++- SmallCountRounding-0.5.0/SmallCountRounding/R/SmallCountRounding-package.R | 2 SmallCountRounding-0.5.0/SmallCountRounding/build |only SmallCountRounding-0.5.0/SmallCountRounding/inst |only SmallCountRounding-0.5.0/SmallCountRounding/man/FindMaxDiff.Rd | 52 - SmallCountRounding-0.5.0/SmallCountRounding/man/HDutility.Rd | 88 +-- SmallCountRounding-0.5.0/SmallCountRounding/man/Lists2formula.Rd | 44 - SmallCountRounding-0.5.0/SmallCountRounding/man/MakeControl.Rd | 44 - SmallCountRounding-0.5.0/SmallCountRounding/man/ModelMatrix.Rd | 75 +- SmallCountRounding-0.5.0/SmallCountRounding/man/PLS2way.Rd | 67 +- SmallCountRounding-0.5.0/SmallCountRounding/man/PLSrounding.Rd | 242 ++++---- SmallCountRounding-0.5.0/SmallCountRounding/man/Round2.Rd | 119 ++-- SmallCountRounding-0.5.0/SmallCountRounding/man/RoundViaDummy.Rd | 279 +++++----- SmallCountRounding-0.5.0/SmallCountRounding/man/RoundViaDummy2.Rd | 74 +- SmallCountRounding-0.5.0/SmallCountRounding/man/SmallCountData.Rd | 68 +- SmallCountRounding-0.5.0/SmallCountRounding/man/SmallCountRounding-package.Rd | 50 - SmallCountRounding-0.5.0/SmallCountRounding/man/aggrtab.Rd | 66 +- SmallCountRounding-0.5.0/SmallCountRounding/man/makeroundtabs.Rd | 142 ++--- SmallCountRounding-0.5.0/SmallCountRounding/man/print.PLSrounded.Rd | 45 - SmallCountRounding-0.5.0/SmallCountRounding/man/redcube.Rd | 88 +-- SmallCountRounding-0.5.0/SmallCountRounding/man/roundcube.Rd | 86 +-- SmallCountRounding-0.5.0/SmallCountRounding/man/sosialFiktiv.Rd | 42 - SmallCountRounding-0.5.0/SmallCountRounding/tests |only SmallCountRounding-0.5.0/SmallCountRounding/vignettes |only 32 files changed, 1083 insertions(+), 926 deletions(-)
More information about SmallCountRounding at CRAN
Permanent link
Title: Processing of Model Parameters
Description: Utilities for processing the parameters of various
statistical models. Beyond computing p values, CIs, and other indices
for a wide variety of models (see support list of insight; Lüdecke,
Waggoner & Makowski (2019) <doi:10.21105/joss.01412>), this package
implements features like bootstrapping or simulating of parameters and
models, feature reduction (feature extraction and variable selection)
as well as functions to describe data and variable characteristics
(e.g. skewness, kurtosis, smoothness or distribution).
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>),
Dominique Makowski [aut] (<https://orcid.org/0000-0001-5375-9967>),
Mattan S. Ben-Shachar [aut] (<https://orcid.org/0000-0002-4287-4801>),
Indrajeet Patil [aut] (<https://orcid.org/0000-0003-1995-6531>),
Søren Højsgaard [aut],
Zen J. Lau [ctb]
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between parameters versions 0.8.5 dated 2020-09-12 and 0.8.6 dated 2020-09-21
parameters-0.8.5/parameters/R/format_algorithm.R |only parameters-0.8.5/parameters/R/format_model.R |only parameters-0.8.5/parameters/man/format_algorithm.Rd |only parameters-0.8.5/parameters/man/format_model.Rd |only parameters-0.8.6/parameters/DESCRIPTION | 6 parameters-0.8.6/parameters/MD5 | 133 +- parameters-0.8.6/parameters/NAMESPACE | 5 parameters-0.8.6/parameters/NEWS.md | 139 -- parameters-0.8.6/parameters/R/check_factorstructure.R | 4 parameters-0.8.6/parameters/R/ci.R | 7 parameters-0.8.6/parameters/R/ci_betwithin.R | 20 parameters-0.8.6/parameters/R/ci_wald.R | 7 parameters-0.8.6/parameters/R/dof.R | 3 parameters-0.8.6/parameters/R/extract_parameters.R | 27 parameters-0.8.6/parameters/R/get_scores.R | 108 +- parameters-0.8.6/parameters/R/model_parameters.BFBayesFactor.R | 13 parameters-0.8.6/parameters/R/model_parameters_mixed.R | 21 parameters-0.8.6/parameters/R/print.parameters_model.R | 4 parameters-0.8.6/parameters/R/standard_error.R | 9 parameters-0.8.6/parameters/R/utils_cleaners.R | 4 parameters-0.8.6/parameters/README.md | 21 parameters-0.8.6/parameters/build/partial.rdb |binary parameters-0.8.6/parameters/inst/doc/demean.html | 506 +++++----- parameters-0.8.6/parameters/inst/doc/efa_cfa.html | 120 +- parameters-0.8.6/parameters/inst/doc/model_parameters.html | 332 +++--- parameters-0.8.6/parameters/inst/doc/model_parameters_mice.html | 84 - parameters-0.8.6/parameters/inst/doc/model_parameters_robust.html | 150 +- parameters-0.8.6/parameters/inst/doc/model_parameters_standardized.html | 48 parameters-0.8.6/parameters/inst/doc/parameters_reduction.html | 46 parameters-0.8.6/parameters/inst/doc/parameters_selection.html | 56 - parameters-0.8.6/parameters/man/bootstrap_model.Rd | 64 - parameters-0.8.6/parameters/man/bootstrap_parameters.Rd | 122 +- parameters-0.8.6/parameters/man/check_clusterstructure.Rd | 78 - parameters-0.8.6/parameters/man/check_multimodal.Rd | 100 - parameters-0.8.6/parameters/man/ci.merMod.Rd | 276 ++--- parameters-0.8.6/parameters/man/degrees_of_freedom.Rd | 3 parameters-0.8.6/parameters/man/demean.Rd | 392 +++---- parameters-0.8.6/parameters/man/describe_distribution.Rd | 142 +- parameters-0.8.6/parameters/man/format_order.Rd | 52 - parameters-0.8.6/parameters/man/model_parameters.BFBayesFactor.Rd | 148 +- parameters-0.8.6/parameters/man/model_parameters.Mclust.Rd | 46 parameters-0.8.6/parameters/man/model_parameters.default.Rd | 338 +++--- parameters-0.8.6/parameters/man/model_parameters.gam.Rd | 162 +-- parameters-0.8.6/parameters/man/model_parameters.lavaan.Rd | 170 +-- parameters-0.8.6/parameters/man/model_parameters.merMod.Rd | 266 ++--- parameters-0.8.6/parameters/man/model_parameters.mira.Rd | 120 +- parameters-0.8.6/parameters/man/model_parameters.mlm.Rd | 204 ++-- parameters-0.8.6/parameters/man/model_parameters.principal.Rd | 170 +-- parameters-0.8.6/parameters/man/model_parameters.rma.Rd | 132 +- parameters-0.8.6/parameters/man/model_parameters.zeroinfl.Rd | 116 +- parameters-0.8.6/parameters/man/p_value.Rd | 206 ++-- parameters-0.8.6/parameters/man/p_value_betwithin.Rd | 146 +- parameters-0.8.6/parameters/man/p_value_wald.Rd | 126 +- parameters-0.8.6/parameters/man/parameters_table.Rd | 102 +- parameters-0.8.6/parameters/man/principal_components.Rd | 216 ++-- parameters-0.8.6/parameters/man/print.Rd | 138 +- parameters-0.8.6/parameters/man/qol_cancer.Rd | 20 parameters-0.8.6/parameters/man/rescale_weights.Rd | 190 +-- parameters-0.8.6/parameters/man/select_parameters.Rd | 200 +-- parameters-0.8.6/parameters/man/simulate_model.Rd | 150 +- parameters-0.8.6/parameters/man/simulate_parameters.Rd | 208 ++-- parameters-0.8.6/parameters/man/standard_error.Rd | 232 ++-- parameters-0.8.6/parameters/tests/testthat/test-glmmTMB-2.R | 34 parameters-0.8.6/parameters/tests/testthat/test-glmmTMB.R | 36 parameters-0.8.6/parameters/tests/testthat/test-lmerTest.R | 50 parameters-0.8.6/parameters/tests/testthat/test-model_parameters.hurdle.R | 24 parameters-0.8.6/parameters/tests/testthat/test-model_parameters.truncreg.R | 40 parameters-0.8.6/parameters/tests/testthat/test-model_parameters_std.R | 44 parameters-0.8.6/parameters/tests/testthat/test-parameters_type.R |only parameters-0.8.6/parameters/tests/testthat/test-quantreg.R | 28 70 files changed, 3598 insertions(+), 3566 deletions(-)
Title: Most Likely Transformations: Documentation and Regression Tests
Description: Additional documentation, a package vignette and
regression tests for package mlt.
Author: Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>)
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between mlt.docreg versions 1.0-7 dated 2020-08-31 and 1.0-8 dated 2020-09-21
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ inst/NEWS.Rd | 8 ++++++++ inst/doc/mlt.R | 20 ++++++++++++++++---- inst/doc/mlt.Rnw | 20 ++++++++++++++++---- inst/doc/mlt.pdf |binary vignettes/mlt.Rnw | 20 ++++++++++++++++---- 7 files changed, 66 insertions(+), 22 deletions(-)
Title: Manipulating Labelled Data
Description: Work with labelled data imported from 'SPSS'
or 'Stata' with 'haven' or 'foreign'. This package
provides useful functions to deal with "haven_labelled" and
"haven_labelled_spss" classes introduced by 'haven' package.
Author: Joseph Larmarange [aut, cre] (<https://orcid.org/0000-0001-7097-700X>),
Daniel Ludecke [ctb],
Hadley Wickham [ctb],
Michal Bojanowski [ctb],
François Briatte [ctb]
Maintainer: Joseph Larmarange <joseph@larmarange.net>
Diff between labelled versions 2.6.0 dated 2020-08-27 and 2.7.0 dated 2020-09-21
DESCRIPTION | 8 MD5 | 85 - NAMESPACE | 287 ++-- NEWS.md | 291 ++-- R/copy_labels.R | 163 +- R/drop_unused_value_labels.R | 72 - R/labelled-package.R | 20 R/labelled.R | 32 R/lookfor.R | 480 +++---- R/na_values.R | 413 +++--- R/recode.R | 168 +- R/remove_attributes.R | 72 - R/remove_labels.R | 258 ++-- R/retrocompatibility.R | 140 +- R/tagged_na.R | 38 R/to_character.R | 86 - R/to_factor.R | 388 +++--- R/to_labelled.R | 452 +++---- R/to_na.R | 138 +- R/val_labels.R | 803 ++++++------ R/var_label.R | 290 ++-- README.md | 112 - build/vignette.rds |binary inst/doc/intro_labelled.R | 558 ++++---- inst/doc/intro_labelled.Rmd | 1072 ++++++++--------- inst/doc/intro_labelled.html | 2395 ++++++++++++++++++-------------------- inst/doc/look_for.R | 120 - inst/doc/look_for.Rmd | 280 ++-- inst/doc/look_for.html | 1220 ++++++++++--------- man/copy_labels.Rd | 12 man/figures/labelled.svg | 312 ++-- man/look_for.Rd | 250 +-- man/na_values.Rd | 179 +- man/names_prefixed_by_values.Rd | 60 man/nolabel_to_na.Rd | 36 man/reexports.Rd | 52 man/val_labels.Rd | 261 ++-- man/val_labels_to_na.Rd | 42 man/var_label.Rd | 169 +- tests/testthat.R | 6 tests/testthat/test-copy_labels.r |only tests/testthat/test-labelled.r | 889 +++++++------- vignettes/intro_labelled.Rmd | 1072 ++++++++--------- vignettes/look_for.Rmd | 280 ++-- 44 files changed, 7127 insertions(+), 6934 deletions(-)
Title: Segment Images in Text Lines and Words
Description: Find text lines in scanned images and segment the lines into words.
Includes implementations of the paper 'Novel A* Path Planning Algorithm for Line Segmentation of Handwritten Documents' by Surinta O. et al (2014) <doi:10.1109/ICFHR.2014.37> available at <https://github.com/smeucci/LineSegm>,
an implementation of 'A Statistical approach to line segmentation in handwritten documents' by Arivazhagan M. et al (2007) <doi:10.1117/12.704538>,
and a wrapper for an image segmentation technique to detect words in text lines as described in the paper 'Scale Space Technique for Word Segmentation in Handwritten Documents' by Manmatha R. and Srimal N. (1999) paper at <doi:10.1007/3-540-48236-9_3>, wrapper for code available at <https://github.com/arthurflor23/text-segmentation>.
Author: Jan Wijffels [aut, cre, cph] (R wrapper),
Vrije Universiteit Brussel - DIGI: Brussels Platform for Digital
Humanities [cph] (R wrapper),
Jeroen Ooms [ctb, cph] (More details in LICENSE.note file),
Arthur Flôr [ctb, cph] (More details in LICENSE.note file),
Saverio Meucci [ctb, cph] (More details in LICENSE.note file),
Yeara Kozlov [ctb, cph] (More details in LICENSE.note file),
Tino Weinkauf [ctb, cph] (More details in LICENSE.note file)
Maintainer: Jan Wijffels <jan.wijffels@vub.be>
Diff between image.textlinedetector versions 0.1.0 dated 2020-09-15 and 0.1.1 dated 2020-09-21
DESCRIPTION | 9 - MD5 | 18 +- NEWS.md |only R/RcppExports.R | 60 --------- configure | 1 src/LineSegmentation.cpp | 7 - src/Makevars.win | 8 + src/RcppExports.cpp | 179 +--------------------------- src/base.cpp | 268 +++++++++++++++++++++--------------------- src/rcpp-linelocalization.cpp | 4 src/sieve.cpp |only 11 files changed, 182 insertions(+), 372 deletions(-)
More information about image.textlinedetector at CRAN
Permanent link
Title: A Handbook of Statistical Analyses Using R (3rd Edition)
Description: Functions, data sets, analyses and examples from the
third edition of the book
''A Handbook of Statistical Analyses Using R'' (Torsten Hothorn and Brian S.
Everitt, Chapman & Hall/CRC, 2014). The first chapter
of the book, which is entitled ''An Introduction to R'',
is completely included in this package, for all other chapters,
a vignette containing all data analyses is available. In addition,
Sweave source code for slides of selected chapters is included in
this package (see HSAUR3/inst/slides). The publishers web page is
'<http://www.crcpress.com/product/isbn/9781482204582>'.
Author: Torsten Hothorn and Brian S. Everitt
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between HSAUR3 versions 1.0-9 dated 2018-05-28 and 1.0-10 dated 2020-09-21
DESCRIPTION | 28 ++-- MD5 | 158 +++++++++++++------------- build/vignette.rds |binary data/BCG.rda |binary data/CYGOB1.rda |binary data/Lanza.rda |binary data/birthdeathrates.rda |binary data/bladdercancer.rda |binary data/epilepsy.rda |binary data/foster.rda |binary data/heptathlon.rda |binary data/meteo.rda |binary data/orallesions.rda |binary data/phosphate.rda |binary data/pistonrings.rda |binary data/planets.rda |binary data/plasma.rda |binary data/polyps.rda |binary data/rearrests.rda |binary data/roomwidth.rda |binary data/schizophrenia.rda |binary data/schizophrenia2.rda |binary data/smoking.rda |binary data/students.rda |binary data/suicides.rda |binary data/toothpaste.rda |binary data/voting.rda |binary data/water.rda |binary data/watervoles.rda |binary data/waves.rda |binary data/weightgain.rda |binary inst/NEWS | 4 inst/doc/Ch_analysing_longitudinal_dataI.R | 1 inst/doc/Ch_analysing_longitudinal_dataI.pdf |binary inst/doc/Ch_analysing_longitudinal_dataII.R | 1 inst/doc/Ch_analysing_longitudinal_dataII.pdf |binary inst/doc/Ch_analysis_of_variance.R | 1 inst/doc/Ch_analysis_of_variance.pdf |binary inst/doc/Ch_bayesian_inference.R | 1 inst/doc/Ch_bayesian_inference.pdf |binary inst/doc/Ch_cluster_analysis.R | 1 inst/doc/Ch_cluster_analysis.pdf |binary inst/doc/Ch_conditional_inference.R | 1 inst/doc/Ch_conditional_inference.pdf |binary inst/doc/Ch_density_estimation.R | 1 inst/doc/Ch_density_estimation.pdf |binary inst/doc/Ch_errata.R | 1 inst/doc/Ch_errata.pdf |binary inst/doc/Ch_gam.R | 1 inst/doc/Ch_gam.pdf |binary inst/doc/Ch_graphical_display.R | 7 - inst/doc/Ch_graphical_display.Rnw | 8 - inst/doc/Ch_graphical_display.pdf |binary inst/doc/Ch_introduction_to_R.R | 1 inst/doc/Ch_introduction_to_R.pdf |binary inst/doc/Ch_logistic_regression_glm.R | 1 inst/doc/Ch_logistic_regression_glm.pdf |binary inst/doc/Ch_meta_analysis.R | 1 inst/doc/Ch_meta_analysis.pdf |binary inst/doc/Ch_missing_values.R | 1 inst/doc/Ch_missing_values.pdf |binary inst/doc/Ch_multidimensional_scaling.R | 1 inst/doc/Ch_multidimensional_scaling.pdf |binary inst/doc/Ch_multiple_linear_regression.R | 1 inst/doc/Ch_multiple_linear_regression.pdf |binary inst/doc/Ch_principal_components_analysis.R | 1 inst/doc/Ch_principal_components_analysis.pdf |binary inst/doc/Ch_quantile_regression.R | 1 inst/doc/Ch_quantile_regression.pdf |binary inst/doc/Ch_recursive_partitioning.R | 1 inst/doc/Ch_recursive_partitioning.pdf |binary inst/doc/Ch_simple_inference.R | 1 inst/doc/Ch_simple_inference.pdf |binary inst/doc/Ch_simultaneous_inference.R | 1 inst/doc/Ch_simultaneous_inference.pdf |binary inst/doc/Ch_survival_analysis.R | 1 inst/doc/Ch_survival_analysis.pdf |binary man/CHFLS.Rd | 2 man/Forbes2000.Rd | 2 vignettes/Ch_graphical_display.Rnw | 8 - 80 files changed, 110 insertions(+), 128 deletions(-)
Title: Flexible Tool for Bias Detection, Visualization, and Mitigation
Description: Measure fairness metrics in one place for many models. Check how big is model's bias towards different races, sex, nationalities etc. Use measures such as Statistical Parity, Equal odds to detect the discrimination against unprivileged groups. Visualize the bias using heatmap, radar plot, biplot, bar chart (and more!). There are various pre-processing and post-processing bias mitigation algorithms implemented.
Author: Jakub Wiśniewski [aut, cre],
Przemysław Biecek [aut] (<https://orcid.org/0000-0001-8423-1823>)
Maintainer: Jakub Wiśniewski <jakwisn@gmail.com>
Diff between fairmodels versions 0.1.1 dated 2020-08-20 and 0.2.2 dated 2020-09-21
DESCRIPTION | 8 - MD5 | 103 ++++++++++++------------ NEWS.md | 16 +++ R/all_cutoffs.R | 2 R/calculate_group_fairness_metrics.R | 10 +- R/ceteris_paribus_cutoff.R | 2 R/fairness_check.R | 60 +++++++++---- R/fairness_pca.R | 4 R/fairness_radar.R | 11 +- R/group_metric.R | 1 R/helper_functions.R | 10 +- R/metric_scores.R | 4 R/plot_all_cutoffs.R | 2 R/plot_fairness_object.R | 51 ++++++++--- R/plot_stacked_metrics.R | 3 R/print.R | 28 ++++-- R/roc_pivot.R | 3 R/stack_metrics.R | 10 +- R/zzz.R |only README.md | 31 ++++--- inst/WORDLIST |only inst/doc/Advanced_tutorial.Rmd | 16 +-- inst/doc/Advanced_tutorial.html | 80 +++++++++--------- inst/doc/Basic_tutorial.R | 13 +-- inst/doc/Basic_tutorial.Rmd | 38 +++++--- inst/doc/Basic_tutorial.html | 86 ++++++++++---------- man/all_cutoffs.Rd | 2 man/ceteris_paribus_cutoff.Rd | 2 man/compas.Rd | 2 man/fairness_check.Rd | 28 ++++-- man/fairness_radar.Rd | 4 man/figures/class_diagram.png |binary man/figures/flowchart.png |binary man/figures/formulas/parity_loss.png |binary man/figures/logo.png |only man/figures/preview.gif |binary man/german.Rd | 2 man/group_metric.Rd | 1 man/metric_scores.Rd | 4 man/plot_fairness_object.Rd | 14 ++- man/plot_stacked_barplot.Rd | 4 man/print_fairness_object.Rd | 10 +- man/roc_pivot.Rd | 3 tests/testthat/test_ceteris_paribus_with_plot.R | 2 tests/testthat/test_fairness_check.R | 31 ++++++- tests/testthat/test_fairness_object.R | 7 + tests/testthat/test_fairness_radar_and_plot.R | 2 tests/testthat/test_helper_functions.R | 4 tests/testthat/test_metric_scores_with_plot.R | 20 +--- tests/testthat/test_pca_fairness_with_plot.R | 4 tests/testthat/test_performance_and_fairness.R | 14 +-- tests/testthat/test_plot_fairmodels.R | 4 vignettes/Advanced_tutorial.Rmd | 16 +-- vignettes/Basic_tutorial.Rmd | 38 +++++--- 54 files changed, 482 insertions(+), 328 deletions(-)
Title: R Interface to C API of IBM ILOG CPLEX
Description: This is the R Interface to the C API of IBM ILOG CPLEX. It necessarily depends on IBM ILOG CPLEX (>= 12.1).
Author: Mayo Roettger [cre],
Gabriel Gelius-Dietrich [aut],
C. Jonathan Fritzemeier [ctb]
Maintainer: Mayo Roettger <mayo.roettger@hhu.de>
Diff between cplexAPI versions 1.3.6 dated 2019-06-21 and 1.4.0 dated 2020-09-21
cplexAPI-1.3.6/cplexAPI/man/copyPartBaseCPLEX.Rd |only cplexAPI-1.4.0/cplexAPI/DESCRIPTION | 8 +-- cplexAPI-1.4.0/cplexAPI/MD5 | 59 +++++++++++------------ cplexAPI-1.4.0/cplexAPI/NAMESPACE | 1 cplexAPI-1.4.0/cplexAPI/R/cplex.R | 2 cplexAPI-1.4.0/cplexAPI/R/cplexAPI.R | 22 -------- cplexAPI-1.4.0/cplexAPI/R/cplexConst.R | 2 cplexAPI-1.4.0/cplexAPI/R/cplexErrorClass.R | 2 cplexAPI-1.4.0/cplexAPI/R/cplexPtrClass.R | 2 cplexAPI-1.4.0/cplexAPI/R/cplex_checkAPI.R | 2 cplexAPI-1.4.0/cplexAPI/R/cplex_longparamAPI.R | 2 cplexAPI-1.4.0/cplexAPI/R/generics.R | 2 cplexAPI-1.4.0/cplexAPI/R/zzz.R | 11 +++- cplexAPI-1.4.0/cplexAPI/build/vignette.rds |binary cplexAPI-1.4.0/cplexAPI/configure | 37 ++++++++------ cplexAPI-1.4.0/cplexAPI/configure.ac | 28 ++++++++-- cplexAPI-1.4.0/cplexAPI/inst/INSTALL | 16 +++--- cplexAPI-1.4.0/cplexAPI/inst/NEWS.Rd | 18 +++++++ cplexAPI-1.4.0/cplexAPI/inst/c2r.map | 1 cplexAPI-1.4.0/cplexAPI/inst/doc/cplexAPI.R | 1 cplexAPI-1.4.0/cplexAPI/inst/doc/cplexAPI.pdf |binary cplexAPI-1.4.0/cplexAPI/src/Makevars.win | 2 cplexAPI-1.4.0/cplexAPI/src/cplexAPI.c | 43 ++++------------ cplexAPI-1.4.0/cplexAPI/src/cplexAPI.h | 10 +-- cplexAPI-1.4.0/cplexAPI/src/cplexR.c | 2 cplexAPI-1.4.0/cplexAPI/src/cplexR.h | 2 cplexAPI-1.4.0/cplexAPI/src/cplex_checkAPI.c | 2 cplexAPI-1.4.0/cplexAPI/src/cplex_checkAPI.h | 2 cplexAPI-1.4.0/cplexAPI/src/cplex_longparamAPI.c | 2 cplexAPI-1.4.0/cplexAPI/src/cplex_longparamAPI.h | 2 cplexAPI-1.4.0/cplexAPI/src/init.c | 10 --- 31 files changed, 146 insertions(+), 147 deletions(-)
More information about colocalization at CRAN
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Title: A Bootstrap-Based Heterogeneity Test for Meta-Analysis
Description: Implements a bootstrap-based heterogeneity test for standardized mean differences (d), Fisher-transformed Pearson's correlations (r), and natural-logarithm-transformed odds ratio (or) in meta-analysis studies. Depending on the presence of moderators, this Monte Carlo based test can be implemented in the random- or mixed-effects model. This package uses rma() function from the R package 'metafor' to obtain parameter estimates and likelihoods, so installation of R package 'metafor' is required. This approach refers to the studies of Anscombe (1956) <doi:10.2307/2332926>, Haldane (1940) <doi:10.2307/2332614>, Hedges (1981) <doi:10.3102/10769986006002107>, Hedges & Olkin (1985, ISBN:978-0123363800), Silagy, Lancaster, Stead, Mant, & Fowler (2004) <doi:10.1002/14651858.CD000146.pub2>, Viechtbauer (2010) <doi:10.18637/jss.v036.i03>, and Zuckerman (1994, ISBN:978-0521432009).
Author: Ge Jiang [aut, cre],
Han Du [aut],
Zijun Ke [ctb]
Maintainer: Ge Jiang <gejiang2@illinois.edu>
Diff between boot.heterogeneity versions 0.1.0 dated 2020-05-08 and 0.1.1 dated 2020-09-21
DESCRIPTION | 11 - MD5 | 26 +-- R/boot.d.R | 8 - R/boot.fcor.R | 6 R/boot.lnOR.R | 8 - build/vignette.rds |binary inst/doc/boot.heterogeneity.R | 2 inst/doc/boot.heterogeneity.Rmd | 4 inst/doc/boot.heterogeneity.html | 264 ++++++++++++++++++++------------------- man/boot.d.Rd | 8 - man/boot.fcor.Rd | 6 man/boot.lnOR.Rd | 8 - tests/testthat/test_bt.R | 2 vignettes/boot.heterogeneity.Rmd | 4 14 files changed, 179 insertions(+), 178 deletions(-)
More information about boot.heterogeneity at CRAN
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Title: Filter Covariance and Correlation Matrices with
Bootstrapped-Averaged Hierarchical Ansatz
Description: A method to filter correlation and covariance matrices by averaging
bootstrapped filtered hierarchical clustering and boosting. See Ch. Bongiorno and D. Challet,
Covariance matrix filtering with bootstrapped hierarchies (2020) <arXiv:2003.05807> and
Ch. Bongiorno and D. Challet, Reactive Global Minimum Variance Portfolios with k-BAHC covariance cleaning
(2020) <arXiv:2005.08703>.
Author: Christian Bongiorno and Damien Challet
Maintainer: Damien Challet <damien.challet@gmail.com>
Diff between bahc versions 0.2.0 dated 2020-05-15 and 0.3.0 dated 2020-09-21
DESCRIPTION | 16 +++++++++------- MD5 | 9 +++++---- NEWS |only R/main.R | 13 +++++++------ man/filterCorrelation.Rd | 6 ++++-- man/filterCovariance.Rd | 4 ++-- 6 files changed, 27 insertions(+), 21 deletions(-)
Title: Time Series, Analysis and Application
Description: Accompanies the book Rainer Schlittgen and Cristina Sattarhoff (2020) <https://www.degruyter.com/view/title/575978> "Angewandte Zeitreihenanalyse mit R, 4. Auflage" . The package contains the time series and functions used therein. It was developed over many years teaching courses about time series analysis.
Author: Rainer Schlittgen
Maintainer: Rainer Schlittgen <R.Schlittgen@t-online.de>
Diff between tsapp versions 1.0.0 dated 2020-03-20 and 1.0.1 dated 2020-09-21
DESCRIPTION | 8 ++++---- MD5 | 24 ++++++++++++------------ R/frequdom.r | 6 +++--- R/series.r | 2 +- R/smaniplot.r | 21 ++++++++++++--------- R/specialfun.r | 17 ++++++++++------- data/HSV.RData |binary man/HSV.Rd | 2 +- man/LjungBoxPierceTest.Rd | 4 ++-- man/acfpacf.Rd | 6 ++++-- man/missar.Rd | 6 ++++-- man/missls.Rd | 10 +++++++--- man/specest.Rd | 2 +- 13 files changed, 61 insertions(+), 47 deletions(-)
Title: Multivariate Normal Variance Mixtures
Description: Functions for working with (grouped) multivariate normal variance mixture
distributions (evaluation of distribution functions and densities,
random number generation and parameter estimation), including
Student's t distribution for non-integer degrees-of-freedom as well as the grouped t
distribution and copula with multiple degrees-of-freedom parameters.
See Hintz, Hofert, Lemieux (2019) <arXiv:1911.03017> for more details.
Author: Marius Hofert [aut, cre],
Erik Hintz [aut],
Christiane Lemieux [aut]
Maintainer: Marius Hofert <marius.hofert@uwaterloo.ca>
Diff between nvmix versions 0.0-4 dated 2020-06-12 and 0.0-5 dated 2020-09-21
DESCRIPTION | 20 - MD5 | 63 ++-- NAMESPACE | 16 + R/Student.R | 267 ++++++++++++++++- R/auxiliaries.R | 42 +- R/dgnvmix.R | 225 +++++++++++---- R/dnvmix.R | 13 R/fitnvmix.R | 454 +++++++++++++++++++++++------- R/pnvmix.R | 8 R/qnvmix.R | 23 - R/riskmeasures.R | 1 demo/00Index | 2 demo/grouped_mixtures.R |only demo/numerical_experiments.R | 4 inst/doc/nvmix_functionality.html | 570 +++++++++++++++++++------------------- inst/doc/nvmix_riskmeasures.html | 134 +++++--- man/copula.Rd | 73 ++++ man/dependencemeasures.Rd | 2 man/dgnvmix.Rd | 18 - man/dnvmix.Rd | 14 man/fitnvmix.Rd | 29 + man/gammamix.Rd | 2 man/get_set_param.Rd | 48 +-- man/numerical_experiments_data.Rd | 2 man/pgnvmix.Rd | 10 man/pnvmix.Rd | 11 man/qnvmix.rd | 4 man/qqplot_maha.Rd | 14 man/rgnvmix.Rd | 2 man/riskmeasures.Rd | 2 man/rnvmix.Rd | 11 src/eval_gdensmix_integrand.c |only src/eval_gdensmix_integrand.h |only src/init.c | 3 34 files changed, 1411 insertions(+), 676 deletions(-)
Title: Mining Rigs for Specialized Subset Sum, Multi-Subset Sum,
Multidimensional Subset Sum, Multidimensional Knapsack,
Generalized Assignment Problems
Description: Specialized solvers for combinatorial optimization problems in the Subset Sum family. These solvers differ from the mainstream in the options of (i) restricting subset size, (ii) bounding subset elements, (iii) mining real-value sets with predefined subset sum errors, and (iv) finding one or more subsets in limited time. A novel algorithm for mining the one-dimensional Subset Sum induced algorithms for the multi-Subset Sum and the multidimensional Subset Sum. The multi-threaded framework for the latter offers exact algorithms to the multidimensional Knapsack and the Generalized Assignment problems. Historical updates include (a) renewed implementation of the multi-Subset Sum, multidimensional Knapsack and Generalized Assignment solvers; (b) availability of bounding solution space in the multidimensional Subset Sum; (c) fundamental data structure and architectural changes for enhanced cache locality and better chance of SIMD vectorization; (d) an option of mapping real-domain problems to the integer domain with user-controlled precision loss, and those integers are further zipped non-uniformly in 64-bit buffers. Arithmetic on compressed integers is done by bit-manipulation and the design has virtually zero speed lag relative to normal integer arithmetic. Reduction in dimensionality from the compression may yield substantial acceleration; (e) distributed computing infrastructure for multidimensional subset sum. Compilation with g++ '-Ofast' is recommended. See package vignette (<arXiv:1612.04484v3>) for details. Functions prefixed with 'aux' (auxiliary) are or will be implementations of existing foundational or cutting-edge algorithms for solving optimization problems of interest.
Author: Charlie Wusuo Liu
Maintainer: Charlie Wusuo Liu <liuwusuo@gmail.com>
Diff between FLSSS versions 8.5.6 dated 2019-10-28 and 8.6.6 dated 2020-09-21
DESCRIPTION | 8 MD5 | 60 - NAMESPACE | 18 R/RcppExports.R | 8 R/rinterface.r | 244 ++++++ inst/NEWS.Rd | 8 man/FLSSSmultiset.Rd | 204 ++--- man/GAP.Rd | 322 ++++---- man/decomposeMflsss.Rd |only man/mFLSSSobjRun.Rd |only man/mFLSSSpar.Rd | 306 ++++---- man/mFLSSSparImposeBounds.Rd | 2 src/BaB01kp.cpp | 4 src/BaBgapMulthreadKPs.cpp | 4 src/BaBgapMulthreadNodes.cpp | 4 src/DP01kp.cpp | 4 src/DPgapMultithreadKPs.cpp | 4 src/DPgapMultithreadNodes.cpp | 4 src/GAP.cpp | 11 src/GAgap.cpp | 4 src/Gknapsack.cpp | 6 src/RcppExports.cpp | 40 + src/header/dnyTasking.hpp | 21 src/header/mflsssOBJ.hpp | 1002 ++++++++++++++++++++------- src/legacy/BaB01kpOld.cpp | 4 src/legacy/GAP.cpp | 4 src/mflsss.cpp | 35 src/mflsssComoPar.cpp | 48 + src/mflsssDecomp.cpp |only src/mflsssVariableTree.cpp | 5 tests/debugTests/FLSSSnumericIssue20190708.r | 8 tests/debugTests/test001.r |only tests/valgrindTest/valgrindTest.cpp | 54 - 33 files changed, 1630 insertions(+), 816 deletions(-)
Title: Relationship Matrices for Diploid and Autopolyploid Species
Description: Computation of A (pedigree), G (genomic-base), and H (A corrected
by G) relationship matrices for diploid and autopolyploid species. Several methods
are implemented considering additive and non-additive models.
Author: Rodrigo Amadeu [aut, cre],
Catherine Cellon [ctb],
Leticia Lara [ctb],
Marcio Resende [ctb],
Ivone Oliveira [ctb],
Luis Ferrao [ctb],
Patricio Munoz [ctb],
Augusto Garcia [ctb]
Maintainer: Rodrigo Amadeu <rramadeu@ufl.edu>
Diff between AGHmatrix versions 1.0.2 dated 2019-07-30 and 2.0.0 dated 2020-09-21
DESCRIPTION | 13 ++++---- MD5 | 29 ++++++++++--------- R/Gmatrix.R | 60 ++++++++++++++++++++++++++++------------ R/Hmatrix.R | 2 - build/vignette.rds |binary inst/doc/Tutorial_AGHmatrix.R | 36 ++++++++++++------------ inst/doc/Tutorial_AGHmatrix.pdf |binary inst/docs |only man/Amatrix.Rd | 11 ++++++- man/Gmatrix.Rd | 33 ++++++++++++++++------ man/Hmatrix.Rd | 16 ++++++++-- man/formatmatrix.Rd | 10 +++++- man/ped.mrode.Rd | 4 ++ man/ped.sol.Rd | 4 ++ man/snp.pine.Rd | 4 ++ man/snp.sol.Rd | 4 ++ 16 files changed, 150 insertions(+), 76 deletions(-)
Title: Informative Procrustean Matrix Correlation
Description: Estimates corrected Procrustean correlation between matrices for removing overfitting effect. Coissac Eric and Gonindard-Melodelima Christelle (2019) <bioarXiv:10.1101/842070>.
Author: Eric Coissac, Christelle Gonindard-Melodelima
Maintainer: Eric Coissac <eric.coissac@metabarcoding.org>
Diff between ProcMod versions 1.0.3 dated 2019-11-25 and 1.0.6 dated 2020-09-21
ProcMod-1.0.3/ProcMod/man/internal.var2cor.Rd |only ProcMod-1.0.6/ProcMod/DESCRIPTION | 13 ++- ProcMod-1.0.6/ProcMod/MD5 | 35 +++++----- ProcMod-1.0.6/ProcMod/NAMESPACE | 2 ProcMod-1.0.6/ProcMod/R/corls_test.R | 4 - ProcMod-1.0.6/ProcMod/R/covls.R | 76 +++-------------------- ProcMod-1.0.6/ProcMod/R/procmod.R | 1 ProcMod-1.0.6/ProcMod/build/partial.rdb |binary ProcMod-1.0.6/ProcMod/inst/REFERENCES.bib | 40 ++---------- ProcMod-1.0.6/ProcMod/man/as.data.frame.dist.Rd | 3 ProcMod-1.0.6/ProcMod/man/australia.Rd | 16 +++- ProcMod-1.0.6/ProcMod/man/corls_test.Rd | 9 +- ProcMod-1.0.6/ProcMod/man/names.procmod_corls.Rd | 2 ProcMod-1.0.6/ProcMod/man/names.procmod_varls.Rd | 2 ProcMod-1.0.6/ProcMod/man/print.procmod_corls.Rd | 2 ProcMod-1.0.6/ProcMod/man/print.procmod_varls.Rd | 2 ProcMod-1.0.6/ProcMod/man/procmod.Rd | 1 ProcMod-1.0.6/ProcMod/man/procmod_frame.Rd | 9 ++ ProcMod-1.0.6/ProcMod/man/varls.Rd | 23 ------ 19 files changed, 78 insertions(+), 162 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-18 1.2.2
Title: Import and Export Data
Description: Import and export data from the most common statistical formats by using
R functions that guarantee the least loss of the data information, giving special
attention to the date variables and the labelled ones.
Author: Roger Pros, Isaac Subirana, Joan Vila.
Maintainer: Isaac Subirana <isubirana@imim.es>
Diff between ImportExport versions 1.1 dated 2015-09-19 and 1.3 dated 2020-09-21
ImportExport-1.1/ImportExport/inst/doc |only ImportExport-1.3/ImportExport/DESCRIPTION | 14 ++-- ImportExport-1.3/ImportExport/MD5 | 34 +++------- ImportExport-1.3/ImportExport/NAMESPACE | 3 ImportExport-1.3/ImportExport/NEWS.md |only ImportExport-1.3/ImportExport/R/access_export.R | 2 ImportExport-1.3/ImportExport/R/access_import.R | 2 ImportExport-1.3/ImportExport/R/excel_export.R | 11 ++- ImportExport-1.3/ImportExport/build/partial.rdb |binary ImportExport-1.3/ImportExport/inst/Import_ExportApp/server.R | 11 ++- ImportExport-1.3/ImportExport/inst/Import_ExportApp/ui.R | 2 ImportExport-1.3/ImportExport/inst/Import_ExportApp/www/App-guide.html | 4 - ImportExport-1.3/ImportExport/inst/Import_ExportApp/www/excel_export.html | 32 ++------- ImportExport-1.3/ImportExport/man/ImportExport-package.Rd | 1 ImportExport-1.3/ImportExport/man/excel_export.Rd | 13 +-- 15 files changed, 55 insertions(+), 74 deletions(-)
Title: A Handbook of Statistical Analyses Using R (2nd Edition)
Description: Functions, data sets, analyses and examples from the
second edition of the book
''A Handbook of Statistical Analyses Using R'' (Brian S. Everitt and Torsten
Hothorn, Chapman & Hall/CRC, 2008). The first chapter
of the book, which is entitled ''An Introduction to R'',
is completely included in this package, for all other chapters,
a vignette containing all data analyses is available. In addition,
the package contains Sweave code for producing slides for selected
chapters (see HSAUR2/inst/slides).
Author: Brian S. Everitt and Torsten Hothorn
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between HSAUR2 versions 1.1-17 dated 2017-08-20 and 1.1-18 dated 2020-09-21
DESCRIPTION | 12 +- MD5 | 146 +++++++++++++------------- build/vignette.rds |binary data/BCG.rda |binary data/CYGOB1.rda |binary data/Lanza.rda |binary data/birthdeathrates.rda |binary data/bladdercancer.rda |binary data/epilepsy.rda |binary data/foster.rda |binary data/heptathlon.rda |binary data/meteo.rda |binary data/orallesions.rda |binary data/phosphate.rda |binary data/pistonrings.rda |binary data/planets.rda |binary data/plasma.rda |binary data/polyps.rda |binary data/rearrests.rda |binary data/roomwidth.rda |binary data/schizophrenia.rda |binary data/schizophrenia2.rda |binary data/smoking.rda |binary data/students.rda |binary data/suicides.rda |binary data/toothpaste.rda |binary data/voting.rda |binary data/water.rda |binary data/watervoles.rda |binary data/waves.rda |binary data/weightgain.rda |binary inst/NEWS | 4 inst/doc/Ch_analysing_longitudinal_dataI.R | 1 inst/doc/Ch_analysing_longitudinal_dataI.pdf |binary inst/doc/Ch_analysing_longitudinal_dataII.R | 1 inst/doc/Ch_analysing_longitudinal_dataII.pdf |binary inst/doc/Ch_analysis_of_variance.R | 1 inst/doc/Ch_analysis_of_variance.pdf |binary inst/doc/Ch_cluster_analysis.R | 1 inst/doc/Ch_cluster_analysis.pdf |binary inst/doc/Ch_conditional_inference.R | 1 inst/doc/Ch_conditional_inference.pdf |binary inst/doc/Ch_density_estimation.R | 1 inst/doc/Ch_density_estimation.pdf |binary inst/doc/Ch_errata.R | 1 inst/doc/Ch_errata.pdf |binary inst/doc/Ch_gam.R | 1 inst/doc/Ch_gam.pdf |binary inst/doc/Ch_graphical_display.R | 7 - inst/doc/Ch_graphical_display.Rnw | 12 +- inst/doc/Ch_graphical_display.pdf |binary inst/doc/Ch_introduction_to_R.R | 1 inst/doc/Ch_introduction_to_R.pdf |binary inst/doc/Ch_logistic_regression_glm.R | 1 inst/doc/Ch_logistic_regression_glm.pdf |binary inst/doc/Ch_meta_analysis.R | 1 inst/doc/Ch_meta_analysis.pdf |binary inst/doc/Ch_multidimensional_scaling.R | 1 inst/doc/Ch_multidimensional_scaling.pdf |binary inst/doc/Ch_multiple_linear_regression.R | 1 inst/doc/Ch_multiple_linear_regression.pdf |binary inst/doc/Ch_principal_components_analysis.R | 1 inst/doc/Ch_principal_components_analysis.pdf |binary inst/doc/Ch_recursive_partitioning.R | 1 inst/doc/Ch_recursive_partitioning.pdf |binary inst/doc/Ch_simple_inference.R | 1 inst/doc/Ch_simple_inference.pdf |binary inst/doc/Ch_simultaneous_inference.R | 1 inst/doc/Ch_simultaneous_inference.pdf |binary inst/doc/Ch_survival_analysis.R | 1 inst/doc/Ch_survival_analysis.pdf |binary man/CHFLS.Rd | 2 man/Forbes2000.Rd | 2 vignettes/Ch_graphical_display.Rnw | 12 +- 74 files changed, 100 insertions(+), 115 deletions(-)
More information about retroharmonize at CRAN
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More information about SlidingWindows at CRAN
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Title: Visualizing Categorical Data
Description: Visualization techniques, data sets, summary and inference
procedures aimed particularly at categorical data. Special
emphasis is given to highly extensible grid graphics. The
package was package was originally inspired by the book
"Visualizing Categorical Data" by Michael Friendly and is
now the main support package for a new book,
"Discrete Data Analysis with R" by Michael Friendly and
David Meyer (2015).
Author: David Meyer [aut, cre],
Achim Zeileis [aut] (<https://orcid.org/0000-0003-0918-3766>),
Kurt Hornik [aut],
Florian Gerber [ctb],
Michael Friendly [ctb]
Maintainer: David Meyer <David.Meyer@R-project.org>
Diff between vcd versions 1.4-7 dated 2020-04-02 and 1.4-8 dated 2020-09-21
DESCRIPTION | 8 ++--- MD5 | 56 ++++++++++++++++++++-------------------- R/legends.R | 4 ++ build/vignette.rds |binary data/Butterfly.rda |binary data/Employment.rda |binary data/Federalist.rda |binary data/HorseKicks.rda |binary data/Hospital.rda |binary data/Lifeboats.rda |binary data/MSPatients.rda |binary data/PreSex.rda |binary data/RepVict.rda |binary data/Rochdale.rda |binary data/Saxony.rda |binary data/Suicide.rda |binary data/UKSoccer.rda |binary data/WeldonDice.rda |binary data/WomenQueue.rda |binary inst/CITATION | 4 +- inst/NEWS.Rd | 20 ++++++++++---- inst/doc/residual-shadings.R | 2 - inst/doc/residual-shadings.Rnw | 6 ++-- inst/doc/residual-shadings.pdf |binary inst/doc/strucplot.pdf |binary man/Bundesliga.Rd | 2 - man/legends.Rd | 4 ++ man/mosaic.Rd | 2 - vignettes/residual-shadings.Rnw | 6 ++-- 29 files changed, 64 insertions(+), 50 deletions(-)
Title: Optimal Test Design Approach to Fixed and Adaptive Test
Construction
Description: Use the optimal test design approach by Birnbaum (1968, ISBN:9781593119348) and
van der Linden (2018) <doi:10.1201/9781315117430> in constructing fixed and adaptive tests. Supports the following
mixed-integer programming (MIP) solver packages: 'lpsymphony', 'Rsymphony', 'gurobi', 'lpSolve', and 'Rglpk'. The 'gurobi' package
is not available from CRAN; see <https://www.gurobi.com/downloads/>. See vignette for installing 'Rsymphony' package
on Mac systems.
Author: Seung W. Choi [aut, cre] (<https://orcid.org/0000-0003-4777-5420>),
Sangdon Lim [aut] (<https://orcid.org/0000-0002-2988-014X>)
Maintainer: Seung W. Choi <schoi@austin.utexas.edu>
Diff between TestDesign versions 1.0.2 dated 2020-02-05 and 1.1.2 dated 2020-09-21
TestDesign-1.0.2/TestDesign/build/partial.rdb |only TestDesign-1.0.2/TestDesign/data/constraints_fatigue_raw.rda |only TestDesign-1.0.2/TestDesign/data/constraints_reading_raw.rda |only TestDesign-1.0.2/TestDesign/data/constraints_science_raw.rda |only TestDesign-1.0.2/TestDesign/data/itemattrib_fatigue_raw.rda |only TestDesign-1.0.2/TestDesign/data/itemattrib_reading_raw.rda |only TestDesign-1.0.2/TestDesign/data/itemattrib_science_raw.rda |only TestDesign-1.0.2/TestDesign/data/itemcontent_fatigue_raw.rda |only TestDesign-1.0.2/TestDesign/data/itempool_fatigue_raw.rda |only TestDesign-1.0.2/TestDesign/data/itempool_reading_raw.rda |only TestDesign-1.0.2/TestDesign/data/itempool_science_raw.rda |only TestDesign-1.0.2/TestDesign/data/resp_fatigue_raw.rda |only TestDesign-1.0.2/TestDesign/data/stimattrib_reading_raw.rda |only TestDesign-1.0.2/TestDesign/man/OAT.Rd |only TestDesign-1.0.2/TestDesign/man/addTrans.Rd |only TestDesign-1.0.2/TestDesign/man/array_info_1pl.Rd |only TestDesign-1.0.2/TestDesign/man/array_info_2pl.Rd |only TestDesign-1.0.2/TestDesign/man/array_info_3pl.Rd |only TestDesign-1.0.2/TestDesign/man/array_info_gpc.Rd |only TestDesign-1.0.2/TestDesign/man/array_info_gr.Rd |only TestDesign-1.0.2/TestDesign/man/array_info_pc.Rd |only TestDesign-1.0.2/TestDesign/man/array_p_1pl.Rd |only TestDesign-1.0.2/TestDesign/man/array_p_2pl.Rd |only TestDesign-1.0.2/TestDesign/man/array_p_3pl.Rd |only TestDesign-1.0.2/TestDesign/man/array_p_gpc.Rd |only TestDesign-1.0.2/TestDesign/man/array_p_gr.Rd |only TestDesign-1.0.2/TestDesign/man/array_p_pc.Rd |only TestDesign-1.0.2/TestDesign/man/calcDerivative-methods.Rd |only TestDesign-1.0.2/TestDesign/man/calcDerivative2-methods.Rd |only TestDesign-1.0.2/TestDesign/man/calcRP.Rd |only TestDesign-1.0.2/TestDesign/man/calc_info_matrix.Rd |only TestDesign-1.0.2/TestDesign/man/calc_likelihood_function.Rd |only TestDesign-1.0.2/TestDesign/man/calc_log_likelihood.Rd |only TestDesign-1.0.2/TestDesign/man/calc_log_likelihood_function.Rd |only TestDesign-1.0.2/TestDesign/man/eaparray-methods.Rd |only TestDesign-1.0.2/TestDesign/man/extract-methods.Rd |only TestDesign-1.0.2/TestDesign/man/info_1pl.Rd |only TestDesign-1.0.2/TestDesign/man/info_2pl.Rd |only TestDesign-1.0.2/TestDesign/man/info_3pl.Rd |only TestDesign-1.0.2/TestDesign/man/info_gpc.Rd |only TestDesign-1.0.2/TestDesign/man/info_gr.Rd |only TestDesign-1.0.2/TestDesign/man/info_pc.Rd |only TestDesign-1.0.2/TestDesign/man/item_1PL-class.Rd |only TestDesign-1.0.2/TestDesign/man/item_2PL-class.Rd |only TestDesign-1.0.2/TestDesign/man/item_3PL-class.Rd |only TestDesign-1.0.2/TestDesign/man/item_GPC-class.Rd |only TestDesign-1.0.2/TestDesign/man/item_GR-class.Rd |only TestDesign-1.0.2/TestDesign/man/item_PC-class.Rd |only TestDesign-1.0.2/TestDesign/man/item_attrib-class.Rd |only TestDesign-1.0.2/TestDesign/man/item_pool.operators.Rd |only TestDesign-1.0.2/TestDesign/man/makeItemPoolCluster.Rd |only TestDesign-1.0.2/TestDesign/man/mlearray-methods.Rd |only TestDesign-1.0.2/TestDesign/man/p_1pl.Rd |only TestDesign-1.0.2/TestDesign/man/p_2pl.Rd |only TestDesign-1.0.2/TestDesign/man/p_3pl.Rd |only TestDesign-1.0.2/TestDesign/man/p_gpc.Rd |only TestDesign-1.0.2/TestDesign/man/p_gr.Rd |only TestDesign-1.0.2/TestDesign/man/p_pc.Rd |only TestDesign-1.0.2/TestDesign/man/plotEligibilityStats.Rd |only TestDesign-1.0.2/TestDesign/man/plotExposureRateBySegment.Rd |only TestDesign-1.0.2/TestDesign/man/plotExposureRateFinal.Rd |only TestDesign-1.0.2/TestDesign/man/plotExposureRateFinalFlag.Rd |only TestDesign-1.0.2/TestDesign/man/plotInfoOverlay.Rd |only TestDesign-1.0.2/TestDesign/man/plotRMSE.Rd |only TestDesign-1.0.2/TestDesign/man/st_attrib-class.Rd |only TestDesign-1.0.2/TestDesign/man/subsetItemPool.Rd |only TestDesign-1.0.2/TestDesign/man/subsetTest.Rd |only TestDesign-1.0.2/TestDesign/man/theta_EB_single.Rd |only TestDesign-1.0.2/TestDesign/src/IRT_functions.cpp |only TestDesign-1.0.2/TestDesign/tests/testthat/test-examples.R |only TestDesign-1.0.2/TestDesign/tests/testthat/test-exposure.R |only TestDesign-1.0.2/TestDesign/tests/testthat/test-items.R |only TestDesign-1.0.2/TestDesign/tests/testthat/test-static.R |only TestDesign-1.1.2/TestDesign/DESCRIPTION | 45 TestDesign-1.1.2/TestDesign/MD5 | 343 TestDesign-1.1.2/TestDesign/NAMESPACE | 62 TestDesign-1.1.2/TestDesign/NEWS.md | 60 TestDesign-1.1.2/TestDesign/R/RcppExports.R | 495 - TestDesign-1.1.2/TestDesign/R/bayes_functions.R |only TestDesign-1.1.2/TestDesign/R/constraint_functions.R |only TestDesign-1.1.2/TestDesign/R/constraints_operators.R |only TestDesign-1.1.2/TestDesign/R/cpp_documents.R |only TestDesign-1.1.2/TestDesign/R/datasets.R | 162 TestDesign-1.1.2/TestDesign/R/eligibility_functions.R |only TestDesign-1.1.2/TestDesign/R/exposure_control_functions.R |only TestDesign-1.1.2/TestDesign/R/extensions.R |only TestDesign-1.1.2/TestDesign/R/helper_functions.R | 79 TestDesign-1.1.2/TestDesign/R/import.R | 85 TestDesign-1.1.2/TestDesign/R/item_attrib_operators.R |only TestDesign-1.1.2/TestDesign/R/item_class.R | 577 - TestDesign-1.1.2/TestDesign/R/item_functions.R | 1138 +-- TestDesign-1.1.2/TestDesign/R/item_pool_operators.R |only TestDesign-1.1.2/TestDesign/R/loading_functions.R | 1224 +-- TestDesign-1.1.2/TestDesign/R/other_functions.R |only TestDesign-1.1.2/TestDesign/R/plot_functions.R |only TestDesign-1.1.2/TestDesign/R/pool_cluster_operators.R |only TestDesign-1.1.2/TestDesign/R/print_functions.R |only TestDesign-1.1.2/TestDesign/R/runshiny.R | 42 TestDesign-1.1.2/TestDesign/R/shadow_class.R | 794 +- TestDesign-1.1.2/TestDesign/R/shadow_functions.R | 3505 +--------- TestDesign-1.1.2/TestDesign/R/show_functions.R |only TestDesign-1.1.2/TestDesign/R/solver_functions.R | 92 TestDesign-1.1.2/TestDesign/R/st_attrib_operators.R |only TestDesign-1.1.2/TestDesign/R/static_class.R | 144 TestDesign-1.1.2/TestDesign/R/static_functions.R | 263 TestDesign-1.1.2/TestDesign/R/summary_class.R |only TestDesign-1.1.2/TestDesign/R/summary_functions.R |only TestDesign-1.1.2/TestDesign/R/test_operators.R |only TestDesign-1.1.2/TestDesign/R/theta_functions.R |only TestDesign-1.1.2/TestDesign/R/xdata_functions.R |only TestDesign-1.1.2/TestDesign/build/vignette.rds |binary TestDesign-1.1.2/TestDesign/data/constraints_bayes.rda |only TestDesign-1.1.2/TestDesign/data/constraints_bayes_data.rda |only TestDesign-1.1.2/TestDesign/data/constraints_fatigue.rda |binary TestDesign-1.1.2/TestDesign/data/constraints_fatigue_data.rda |only TestDesign-1.1.2/TestDesign/data/constraints_reading.rda |binary TestDesign-1.1.2/TestDesign/data/constraints_reading_data.rda |only TestDesign-1.1.2/TestDesign/data/constraints_science.rda |binary TestDesign-1.1.2/TestDesign/data/constraints_science_data.rda |only TestDesign-1.1.2/TestDesign/data/itemattrib_bayes.rda |only TestDesign-1.1.2/TestDesign/data/itemattrib_bayes_data.rda |only TestDesign-1.1.2/TestDesign/data/itemattrib_fatigue.rda |binary TestDesign-1.1.2/TestDesign/data/itemattrib_fatigue_data.rda |only TestDesign-1.1.2/TestDesign/data/itemattrib_reading.rda |binary TestDesign-1.1.2/TestDesign/data/itemattrib_reading_data.rda |only TestDesign-1.1.2/TestDesign/data/itemattrib_science.rda |binary TestDesign-1.1.2/TestDesign/data/itemattrib_science_data.rda |only TestDesign-1.1.2/TestDesign/data/itemcontent_fatigue_data.rda |only TestDesign-1.1.2/TestDesign/data/itempool_bayes.rda |only TestDesign-1.1.2/TestDesign/data/itempool_bayes_data.rda |only TestDesign-1.1.2/TestDesign/data/itempool_fatigue.rda |binary TestDesign-1.1.2/TestDesign/data/itempool_fatigue_data.rda |only TestDesign-1.1.2/TestDesign/data/itempool_reading.rda |binary TestDesign-1.1.2/TestDesign/data/itempool_reading_data.rda |only TestDesign-1.1.2/TestDesign/data/itempool_science.rda |binary TestDesign-1.1.2/TestDesign/data/itempool_science_data.rda |only TestDesign-1.1.2/TestDesign/data/itempool_se_bayes_data.rda |only TestDesign-1.1.2/TestDesign/data/resp_fatigue_data.rda |only TestDesign-1.1.2/TestDesign/data/stimattrib_reading.rda |binary TestDesign-1.1.2/TestDesign/data/stimattrib_reading_data.rda |only TestDesign-1.1.2/TestDesign/inst/REFERENCES.bib | 11 TestDesign-1.1.2/TestDesign/inst/doc/constraints.R | 90 TestDesign-1.1.2/TestDesign/inst/doc/constraints.Rmd | 112 TestDesign-1.1.2/TestDesign/inst/doc/constraints.html | 1055 +-- TestDesign-1.1.2/TestDesign/inst/doc/rsymphony.Rmd | 41 TestDesign-1.1.2/TestDesign/inst/doc/rsymphony.html | 535 - TestDesign-1.1.2/TestDesign/inst/extdata/constraints_bayes_320.csv |only TestDesign-1.1.2/TestDesign/inst/extdata/example_datasets.R | 70 TestDesign-1.1.2/TestDesign/inst/extdata/itemattrib_bayes_320.csv |only TestDesign-1.1.2/TestDesign/inst/extdata/itemcontent_fatigue_95.csv | 6 TestDesign-1.1.2/TestDesign/inst/extdata/itempool_bayes_320.csv |only TestDesign-1.1.2/TestDesign/inst/extdata/itempool_se_bayes_320.csv |only TestDesign-1.1.2/TestDesign/inst/shiny/app.R | 53 TestDesign-1.1.2/TestDesign/inst/shiny/styles.css | 63 TestDesign-1.1.2/TestDesign/man/Shadow-methods.Rd | 55 TestDesign-1.1.2/TestDesign/man/Static-methods.Rd | 32 TestDesign-1.1.2/TestDesign/man/TestDesign.Rd |only TestDesign-1.1.2/TestDesign/man/TestDesign_alias.Rd |only TestDesign-1.1.2/TestDesign/man/buildConstraints.Rd | 58 TestDesign-1.1.2/TestDesign/man/calcEscore-methods.Rd | 86 TestDesign-1.1.2/TestDesign/man/calcFisher-methods.Rd | 86 TestDesign-1.1.2/TestDesign/man/calcHessian-methods.Rd | 75 TestDesign-1.1.2/TestDesign/man/calcJacobian-methods.Rd | 71 TestDesign-1.1.2/TestDesign/man/calcLocation-methods.Rd | 103 TestDesign-1.1.2/TestDesign/man/calcLogLikelihood-methods.Rd |only TestDesign-1.1.2/TestDesign/man/calcProb-methods.Rd | 101 TestDesign-1.1.2/TestDesign/man/calc_MI_FB.Rd | 4 TestDesign-1.1.2/TestDesign/man/calc_info.Rd | 103 TestDesign-1.1.2/TestDesign/man/calc_info_EB.Rd | 4 TestDesign-1.1.2/TestDesign/man/calc_info_FB.Rd | 4 TestDesign-1.1.2/TestDesign/man/calc_likelihood.Rd | 118 TestDesign-1.1.2/TestDesign/man/calc_posterior.Rd | 2 TestDesign-1.1.2/TestDesign/man/calc_posterior_function.Rd | 2 TestDesign-1.1.2/TestDesign/man/constraint-class.Rd | 21 TestDesign-1.1.2/TestDesign/man/constraints-class.Rd | 49 TestDesign-1.1.2/TestDesign/man/constraints-operators.Rd |only TestDesign-1.1.2/TestDesign/man/createShadowTestConfig.Rd | 132 TestDesign-1.1.2/TestDesign/man/createStaticTestConfig.Rd | 35 TestDesign-1.1.2/TestDesign/man/dataset_bayes.Rd |only TestDesign-1.1.2/TestDesign/man/dataset_fatigue.Rd | 54 TestDesign-1.1.2/TestDesign/man/dataset_reading.Rd | 48 TestDesign-1.1.2/TestDesign/man/dataset_science.Rd | 38 TestDesign-1.1.2/TestDesign/man/eap-methods.Rd | 55 TestDesign-1.1.2/TestDesign/man/find_segment.Rd | 22 TestDesign-1.1.2/TestDesign/man/getSolution-methods.Rd | 3 TestDesign-1.1.2/TestDesign/man/getSolutionAttributes.Rd |only TestDesign-1.1.2/TestDesign/man/info_item.Rd |only TestDesign-1.1.2/TestDesign/man/item-classes.Rd |only TestDesign-1.1.2/TestDesign/man/item_attrib-operators.Rd |only TestDesign-1.1.2/TestDesign/man/item_pool-class.Rd | 29 TestDesign-1.1.2/TestDesign/man/item_pool-operators.Rd |only TestDesign-1.1.2/TestDesign/man/loadConstraints.Rd | 47 TestDesign-1.1.2/TestDesign/man/loadItemAttrib.Rd | 40 TestDesign-1.1.2/TestDesign/man/loadItemPool.Rd | 47 TestDesign-1.1.2/TestDesign/man/loadStAttrib.Rd | 50 TestDesign-1.1.2/TestDesign/man/makeTest-methods.Rd | 2 TestDesign-1.1.2/TestDesign/man/mle-methods.Rd | 72 TestDesign-1.1.2/TestDesign/man/mlef-methods.Rd |only TestDesign-1.1.2/TestDesign/man/output_Shadow-class.Rd | 58 TestDesign-1.1.2/TestDesign/man/output_Shadow_all-class.Rd |only TestDesign-1.1.2/TestDesign/man/output_Static-class.Rd |only TestDesign-1.1.2/TestDesign/man/p_item.Rd |only TestDesign-1.1.2/TestDesign/man/plot-methods.Rd |only TestDesign-1.1.2/TestDesign/man/plotCAT-methods.Rd | 20 TestDesign-1.1.2/TestDesign/man/plotExposure-methods.Rd | 19 TestDesign-1.1.2/TestDesign/man/plotInfo-methods.Rd | 37 TestDesign-1.1.2/TestDesign/man/plotShadow-methods.Rd | 17 TestDesign-1.1.2/TestDesign/man/pool_cluster-class.Rd | 2 TestDesign-1.1.2/TestDesign/man/pool_cluster-operators.Rd |only TestDesign-1.1.2/TestDesign/man/print-methods.Rd |only TestDesign-1.1.2/TestDesign/man/runAssembly.Rd | 6 TestDesign-1.1.2/TestDesign/man/show-methods.Rd |only TestDesign-1.1.2/TestDesign/man/showConstraints.Rd | 6 TestDesign-1.1.2/TestDesign/man/simResp-methods.Rd | 72 TestDesign-1.1.2/TestDesign/man/st_attrib-operators.Rd |only TestDesign-1.1.2/TestDesign/man/summary-classes.Rd |only TestDesign-1.1.2/TestDesign/man/summary-methods.Rd |only TestDesign-1.1.2/TestDesign/man/test-class.Rd | 16 TestDesign-1.1.2/TestDesign/man/test_cluster-class.Rd | 10 TestDesign-1.1.2/TestDesign/man/test_operators.Rd |only TestDesign-1.1.2/TestDesign/man/theta_EAP.Rd | 2 TestDesign-1.1.2/TestDesign/man/theta_EAP_matrix.Rd | 4 TestDesign-1.1.2/TestDesign/man/theta_EB.Rd | 111 TestDesign-1.1.2/TestDesign/man/theta_FB.Rd | 2 TestDesign-1.1.2/TestDesign/man/theta_FB_single.Rd | 2 TestDesign-1.1.2/TestDesign/man/toggleConstraints.Rd |only TestDesign-1.1.2/TestDesign/man/updateConstraints.Rd | 15 TestDesign-1.1.2/TestDesign/src/RcppExports.cpp | 589 - TestDesign-1.1.2/TestDesign/src/info_array_functions.cpp |only TestDesign-1.1.2/TestDesign/src/info_array_functions.h |only TestDesign-1.1.2/TestDesign/src/item_functions.cpp |only TestDesign-1.1.2/TestDesign/src/item_functions.h |only TestDesign-1.1.2/TestDesign/src/other_functions.cpp |only TestDesign-1.1.2/TestDesign/src/posterior_functions.cpp |only TestDesign-1.1.2/TestDesign/src/posterior_functions.h |only TestDesign-1.1.2/TestDesign/src/theta_functions.cpp |only TestDesign-1.1.2/TestDesign/src/theta_functions.h |only TestDesign-1.1.2/TestDesign/tests/testthat/test-refresh-methods.R |only TestDesign-1.1.2/TestDesign/tests/testthat/test-selection-methods.R |only TestDesign-1.1.2/TestDesign/tests/testthat/test-theta-methods.R |only TestDesign-1.1.2/TestDesign/tests/testthat/test_calcEscore_typecast.R |only TestDesign-1.1.2/TestDesign/tests/testthat/test_calcEscore_value.R |only TestDesign-1.1.2/TestDesign/tests/testthat/test_calcFisher_typecast.R |only TestDesign-1.1.2/TestDesign/tests/testthat/test_calcFisher_value.R |only TestDesign-1.1.2/TestDesign/tests/testthat/test_calcProb_typecast.R |only TestDesign-1.1.2/TestDesign/tests/testthat/test_calcProb_value.R |only TestDesign-1.1.2/TestDesign/tests/testthat/test_constraints.R |only TestDesign-1.1.2/TestDesign/tests/testthat/test_deprecated.R |only TestDesign-1.1.2/TestDesign/tests/testthat/test_examples.R |only TestDesign-1.1.2/TestDesign/tests/testthat/test_exposure_methods.R |only TestDesign-1.1.2/TestDesign/tests/testthat/test_item_exclusion.R |only TestDesign-1.1.2/TestDesign/tests/testthat/test_static.R |only TestDesign-1.1.2/TestDesign/vignettes/constraints.Rmd | 112 TestDesign-1.1.2/TestDesign/vignettes/rsymphony.Rmd | 41 254 files changed, 5995 insertions(+), 7940 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-05-30 0.99.2
Title: Safety Diagnostics for Dose-Escalation Trial Designs
Description: Enhances various R packages that support the design and simulation
of phase 1 dose-escalation trials, adding diagnostics to examine
the safety characteristics of these designs in light of expected
inter-individual variation in pharmacokinetics and pharmacodynamics.
See Norris (2020), "Retrospective analysis of a fatal dose-finding
trial" <arXiv:2004.12755>.
Author: David C. Norris [aut, cre, cph]
(<https://orcid.org/0000-0001-9593-6343>)
Maintainer: David C. Norris <david@precisionmethods.guru>
Diff between precautionary versions 0.1-3 dated 2020-09-13 and 0.1-4 dated 2020-09-21
DESCRIPTION | 8 MD5 | 18 + NEWS.md | 6 build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 13 + inst/doc/FDA-proactive.R |only inst/doc/FDA-proactive.Rmd |only inst/doc/FDA-proactive.html |only inst/doc/Intro.html | 358 +++++++++++++++++++++++++++--------- vignettes/FDA-proactive.Rmd |only vignettes/precautionary-package.bib | 25 ++ 12 files changed, 329 insertions(+), 99 deletions(-)
Title: Data Package for 'pathfindR'
Description: This is a data-only package, containing data needed to run the CRAN
package 'pathfindR', a package for enrichment analysis utilizing active
subnetworks. This package contains protein-protein interaction network data,
data related to gene sets and example input/output data.
Author: Ege Ulgen [cre, cph] (<https://orcid.org/0000-0003-2090-3621>),
Ozan Ozisik [aut] (<https://orcid.org/0000-0001-5980-8002>)
Maintainer: Ege Ulgen <egeulgen@gmail.com>
Diff between pathfindR.data versions 1.0.0 dated 2020-06-04 and 1.1.0 dated 2020-09-21
DESCRIPTION | 8 +-- MD5 | 80 ++++++++++++++++---------------- NEWS.md | 16 ++++++ R/data.R | 90 ++++++++++++++++++------------------- R/sysdata.rda |binary data/RA_clustered.rda |binary data/RA_comparison_output.rda |binary data/RA_output.rda |binary data/biocarta_descriptions.rda |binary data/biocarta_genes.rda |binary data/cell_markers_descriptions.rda |binary data/cell_markers_gsets.rda |binary data/custom_result.rda |binary data/go_all_genes.rda |binary data/kegg_descriptions.rda |binary data/kegg_genes.rda |binary data/mmu_kegg_descriptions.rda |binary data/mmu_kegg_genes.rda |binary data/myeloma_output.rda |binary data/reactome_descriptions.rda |binary data/reactome_genes.rda |binary man/GO_all_terms_df.Rd | 4 - man/RA_clustered.Rd | 11 +--- man/RA_comparison_output.Rd | 4 - man/RA_output.Rd | 4 - man/biocarta_descriptions.Rd | 4 - man/biocarta_genes.Rd | 4 - man/biogrid_adj_list.Rd | 7 +- man/cell_markers_descriptions.Rd | 2 man/cell_markers_gsets.Rd | 2 man/custom_result.Rd | 2 man/go_all_genes.Rd | 4 - man/intact_adj_list.Rd | 7 +- man/kegg_adj_list.Rd | 7 +- man/kegg_descriptions.Rd | 4 - man/kegg_genes.Rd | 4 - man/mmu_kegg_descriptions.Rd | 4 - man/mmu_kegg_genes.Rd | 4 - man/myeloma_output.Rd | 4 - man/reactome_descriptions.Rd | 4 - man/reactome_genes.Rd | 4 - 41 files changed, 150 insertions(+), 134 deletions(-)
More information about pathfindR.data at CRAN
Permanent link
Title: Common Analysis with Remote Sensing Data
Description: A collection of functions used in remote sensing analysis (e.g., conversion from digital numbers to radiance, reflectance, and temperature). It includes several algorithms to calculate the albedo: Liang (2000) <doi:10.1016/S0034-4257(00)00205-4>, Silva et al. (2016) <doi:10.32614/RJ-2016-051>, Tasumi et al. (2008) <doi:10.1061/(ASCE)1084-0699(2008)13:2(51)>, among others; and include functions to derive several spectral indices. Although the current version implements basic functions, it will be expandable to a more robust tool for water cycle modeling (e.g., to include surface runoff and evapotranspiration calculations) in the near future.
This package is under development at the Institute about Natural Resources Research (INIRENA) from the Universidad Michoacana de San Nicolas de Hidalgo.
Author: Rafael Hernandez-Guzman [aut, cre]
(<https://orcid.org/0000-0002-2711-9015>)
Maintainer: Rafael Hernandez-Guzman <rhernandez.g@gmail.com>
Diff between nightmares versions 0.0.1 dated 2020-09-09 and 0.0.2 dated 2020-09-21
DESCRIPTION | 8 ++--- MD5 | 65 ++++++++++++++++++++++++++++++++++++++---------- NAMESPACE | 19 ++++++++++++++ NEWS |only R/AVI.R |only R/BSI.R |only R/ETo56_miss.R |only R/EVI.R |only R/GCI.R |only R/LAI.R |only R/MNDWI.R |only R/MSAVI.R |only R/NBR.R |only R/NBR2.R |only R/NDMI.R |only R/NDVI.R |only R/NDWI.R |only R/NPCRI.R |only R/SAVI.R |only R/SI.R |only R/alb_oli.R | 2 - R/atm_pressure.R |only R/dsi_oli.R |only R/rad_oli.R | 2 - R/ref_oli.R | 2 - R/solrad.R |only R/thermal_oli.R | 4 +- inst/doc/vignettes.Rmd | 54 ++++++++++++++++++++++++++++++++++++--- inst/doc/vignettes.html | 59 ++++++++++++++++++++++++++++++++++++------- man/AVI.Rd |only man/BSI.Rd |only man/ETo56_miss.Rd |only man/EVI.Rd |only man/GCI.Rd |only man/LAI.Rd |only man/MNDWI.Rd |only man/MSAVI.Rd |only man/NBR.Rd |only man/NBR2.Rd |only man/NDMI.Rd |only man/NDVI.Rd |only man/NDWI.Rd |only man/NPCRI.Rd |only man/SAVI.Rd |only man/SI.Rd |only man/alb_oli.Rd | 2 - man/atm_pressure.Rd |only man/dsi_oli.Rd |only man/rad_oli.Rd | 2 - man/ref_oli.Rd | 2 - man/solrad.Rd |only man/thermal_oli.Rd | 2 - vignettes/vignettes.Rmd | 54 ++++++++++++++++++++++++++++++++++++--- 53 files changed, 232 insertions(+), 45 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-08 1.0.17
2020-09-04 1.0.16
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-03 1.0.4
Title: Bayesian Network Structure Learning, Parameter Learning and
Inference
Description: Bayesian network structure learning, parameter learning and inference.
This package implements constraint-based (PC, GS, IAMB, Inter-IAMB, Fast-IAMB, MMPC,
Hiton-PC, HPC), pairwise (ARACNE and Chow-Liu), score-based (Hill-Climbing and Tabu
Search) and hybrid (MMHC, RSMAX2, H2PC) structure learning algorithms for discrete,
Gaussian and conditional Gaussian networks, along with many score functions and
conditional independence tests.
The Naive Bayes and the Tree-Augmented Naive Bayes (TAN) classifiers are also implemented.
Some utility functions (model comparison and manipulation, random data generation, arc
orientation testing, simple and advanced plots) are included, as well as support for
parameter estimation (maximum likelihood and Bayesian) and inference, conditional
probability queries, cross-validation, bootstrap and model averaging.
Development snapshots with the latest bugfixes are available from <https://www.bnlearn.com/>.
Author: Marco Scutari [aut, cre], Robert Ness [ctb]
Maintainer: Marco Scutari <marco.scutari@gmail.com>
Diff between bnlearn versions 4.6 dated 2020-09-15 and 4.6.1 dated 2020-09-21
Changelog | 5 +++++ DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/data.preprocessing.R | 5 +++++ R/frontend-data.R | 2 +- 5 files changed, 19 insertions(+), 9 deletions(-)