Title: Bindings to 'OpenCV' Computer Vision Library
Description: Experimenting with computer vision and machine learning in R. This
package exposes some of the available 'OpenCV' <https://opencv.org/> algorithms,
such as edge, body or face detection. These can either be applied to analyze
static images, or to filter live video footage from a camera device.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>),
Jan Wijffels [aut]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between opencv versions 0.1 dated 2019-04-01 and 0.2.0 dated 2020-09-24
DESCRIPTION | 31 ++++--- MD5 | 44 +++++++---- NAMESPACE | 8 ++ NEWS |only R/RcppExports.R | 60 +++++++++++++++ R/areas.R |only R/init.R | 45 ++++++++++- R/keypoints.R |only R/opencv.R | 33 +++++++- R/utils.R |only cleanup |only configure | 28 ++++--- man/ocv_keypoints.Rd |only man/opencv-area.Rd |only man/opencv.Rd | 18 +++- man/reexports.Rd | 2 src/Makevars.win | 12 +-- src/RcppExports.cpp | 198 +++++++++++++++++++++++++++++++++++++++++++++++++++ src/areas.cpp |only src/base.cpp | 45 ++++++++++- src/color.cpp |only src/effects.cpp | 8 ++ src/enums.cpp |only src/face.cpp | 8 ++ src/features.cpp |only src/hog.cpp | 6 + src/util.cpp | 31 ------- src/util.hpp | 1 src/version.cpp |only 29 files changed, 484 insertions(+), 94 deletions(-)
Title: Labelled Data Utility Functions
Description: Collection of functions dealing with labelled data, like reading and
writing data between R and other statistical software packages like 'SPSS',
'SAS' or 'Stata', and working with labelled data. This includes easy ways
to get, set or change value and variable label attributes, to convert
labelled vectors into factors or numeric (and vice versa), or to deal with
multiple declared missing values.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>),
David Ranzolin [ctb]
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjlabelled versions 1.1.6 dated 2020-06-25 and 1.1.7 dated 2020-09-24
DESCRIPTION | 10 +++--- MD5 | 20 ++++++------- NEWS.md | 10 ++++++ R/set_labels.R | 6 ++-- R/utils_get_dots.R | 40 +++++++++++++++++++++++++++ R/write.R | 18 ++++++++---- README.md | 4 +- inst/doc/intro_sjlabelled.html | 52 +++++++++++++++++------------------ inst/doc/labelleddata.html | 4 +- inst/doc/quasiquotation.html | 60 ++++++++++++++++++++--------------------- man/write_spss.Rd | 5 ++- 11 files changed, 143 insertions(+), 86 deletions(-)
Title: Eigenvalues and Singular Values and Vectors from Large Matrices
Description: R interface to 'PRIMME' <http://www.cs.wm.edu/~andreas/software/>, a C library for computing a few
eigenvalues and their corresponding eigenvectors of a real symmetric or complex
Hermitian matrix, or generalized Hermitian eigenproblem. It can also compute
singular values and vectors of a square or rectangular matrix. 'PRIMME' finds
largest, smallest, or interior singular/eigenvalues and can use preconditioning
to accelerate convergence. General description of the methods are provided in the papers
Stathopoulos (2010, <doi:10.1145/1731022.1731031>) and Wu (2017, <doi:10.1137/16M1082214>).
See 'citation("PRIMME")' for details.
Author: Eloy Romero [aut, cre],
Andreas Stathopoulos [aut],
Lingfei Wu [aut],
College of William & Mary [cph]
Maintainer: Eloy Romero <eloy@cs.wm.edu>
Diff between PRIMME versions 3.1-1 dated 2020-05-26 and 3.1-2 dated 2020-09-24
DESCRIPTION | 16 +- MD5 | 20 +-- inst/include/primme_eigs.h | 3 inst/include/primme_svds.h | 2 src/primme/eigs/main_iter.c | 198 ++++++++++++++++++++++++++----- src/primme/eigs/main_iter.h | 201 ++++++++++++++++++++++++++------ src/primme/eigs/primme_c.c | 16 +- src/primme/eigs/primme_interface.c | 130 ++++++++++++++++++++ src/primme/eigs/solve_projection.c | 3 src/primme/eigs/solve_projection.h | 101 ++++++++++++++-- src/primme/svds/primme_svds_interface.c | 73 +++++++++++ 11 files changed, 663 insertions(+), 100 deletions(-)
Title: Functions to Efficiently Access NFL Play by Play Data
Description: A set of functions to access National Football League play-by-play
data from <https://www.nfl.com/>.
Author: Sebastian Carl [aut],
Ben Baldwin [cre, aut],
Lee Sharpe [ctb],
Maksim Horowitz [ctb],
Ron Yurko [ctb],
Samuel Ventura [ctb]
Maintainer: Ben Baldwin <bbaldwin206@gmail.com>
Diff between nflfastR versions 2.2.1 dated 2020-09-01 and 3.0.0 dated 2020-09-24
nflfastR-2.2.1/nflfastR/R/helper_add_roster_mutations.R |only nflfastR-2.2.1/nflfastR/R/helper_scrape_roster.R |only nflfastR-2.2.1/nflfastR/R/helper_scrape_schedule.R |only nflfastR-3.0.0/nflfastR/DESCRIPTION | 8 nflfastR-3.0.0/nflfastR/MD5 | 43 - nflfastR-3.0.0/nflfastR/NAMESPACE | 8 nflfastR-3.0.0/nflfastR/NEWS.md | 26 nflfastR-3.0.0/nflfastR/R/helper_add_cp_cpoe.R | 2 nflfastR-3.0.0/nflfastR/R/helper_add_fixed_drives.R | 6 nflfastR-3.0.0/nflfastR/R/helper_add_game_data.R | 59 + nflfastR-3.0.0/nflfastR/R/helper_add_nflscrapr_mutations.R | 5 nflfastR-3.0.0/nflfastR/R/helper_add_xyac.R | 282 ++++---- nflfastR-3.0.0/nflfastR/R/helper_additional_functions.R | 412 ++++++------- nflfastR-3.0.0/nflfastR/R/helper_database_functions.R | 66 +- nflfastR-3.0.0/nflfastR/R/helper_decode_player_ids.R |only nflfastR-3.0.0/nflfastR/R/helper_get_scheds_and_rosters.R |only nflfastR-3.0.0/nflfastR/R/helper_scrape_cdns.R |only nflfastR-3.0.0/nflfastR/R/helper_tidy_play_stats.R | 113 +-- nflfastR-3.0.0/nflfastR/R/top-level_scraper.R | 183 ++--- nflfastR-3.0.0/nflfastR/README.md | 25 nflfastR-3.0.0/nflfastR/man/decode_player_ids.Rd |only nflfastR-3.0.0/nflfastR/man/fast_scraper.Rd | 14 nflfastR-3.0.0/nflfastR/man/fast_scraper_roster.Rd |only nflfastR-3.0.0/nflfastR/man/update_db.Rd | 11 nflfastR-3.0.0/nflfastR/tests |only 25 files changed, 671 insertions(+), 592 deletions(-)
Title: Model and Analyse Interval Data
Description: Implements methodologies for modelling interval data by Normal
and Skew-Normal distributions, considering appropriate parameterizations of
the variance-covariance matrix that takes into account the intrinsic nature of
interval data, and lead to four different possible configuration structures.
The Skew-Normal parameters can be estimated by maximum likelihood, while Normal
parameters may be estimated by maximum likelihood or robust trimmed maximum
likelihood methods.
Author: Pedro Duarte Silva <psilva@porto.ucp.pt>, Paula Brito
<mpbrito.fep.up.pt>
Maintainer: Pedro Duarte Silva <psilva@porto.ucp.pt>
Diff between MAINT.Data versions 2.4.0 dated 2020-06-25 and 2.5.0 dated 2020-09-24
MAINT.Data-2.4.0/MAINT.Data/R/Azzalini_sn_code.R |only MAINT.Data-2.4.0/MAINT.Data/man/InfCrt-methods.Rd |only MAINT.Data-2.4.0/MAINT.Data/man/logLik-methods.Rd |only MAINT.Data-2.5.0/MAINT.Data/CHANGELOG | 70 ++ MAINT.Data-2.5.0/MAINT.Data/DESCRIPTION | 14 MAINT.Data-2.5.0/MAINT.Data/MD5 | 168 +++--- MAINT.Data-2.5.0/MAINT.Data/NAMESPACE | 16 MAINT.Data-2.5.0/MAINT.Data/R/AgrMcDt.R | 7 MAINT.Data-2.5.0/MAINT.Data/R/CPMaxLik.R | 13 MAINT.Data-2.5.0/MAINT.Data/R/ClasGenMetDef.R | 28 - MAINT.Data-2.5.0/MAINT.Data/R/Conversions.R | 11 MAINT.Data-2.5.0/MAINT.Data/R/CorrHetSNSol.R | 77 +- MAINT.Data-2.5.0/MAINT.Data/R/CorrSNSol.R | 33 - MAINT.Data-2.5.0/MAINT.Data/R/DACrossVal.R | 2 MAINT.Data-2.5.0/MAINT.Data/R/IData.R | 279 ++++++---- MAINT.Data-2.5.0/MAINT.Data/R/IdtMaxLikN.R | 11 MAINT.Data-2.5.0/MAINT.Data/R/IdtMaxLikSN.R | 229 +++++--- MAINT.Data-2.5.0/MAINT.Data/R/IdtMclust_methods.R | 145 +++-- MAINT.Data-2.5.0/MAINT.Data/R/IdtOutl_methods.R | 8 MAINT.Data-2.5.0/MAINT.Data/R/RepLOptim.R | 14 MAINT.Data-2.5.0/MAINT.Data/R/RestCPMaxLik.R | 76 +- MAINT.Data-2.5.0/MAINT.Data/R/Rfasttle.R | 3 MAINT.Data-2.5.0/MAINT.Data/R/RobMxtDEst.R | 15 MAINT.Data-2.5.0/MAINT.Data/R/Robldaqda.R | 17 MAINT.Data-2.5.0/MAINT.Data/R/SNmle.R | 67 +- MAINT.Data-2.5.0/MAINT.Data/R/fasttle.R | 9 MAINT.Data-2.5.0/MAINT.Data/R/fulltle.R | 6 MAINT.Data-2.5.0/MAINT.Data/R/lqda.R | 12 MAINT.Data-2.5.0/MAINT.Data/R/mle.R | 129 ++++ MAINT.Data-2.5.0/MAINT.Data/R/msnCP.dev.R | 7 MAINT.Data-2.5.0/MAINT.Data/R/msnCP.dev.grad.R | 10 MAINT.Data-2.5.0/MAINT.Data/R/msnCP.dev.grad.out.prod.R |only MAINT.Data-2.5.0/MAINT.Data/R/sknda.R | 49 - MAINT.Data-2.5.0/MAINT.Data/man/Abalone.Rd | 4 MAINT.Data-2.5.0/MAINT.Data/man/AgrMcDt.Rd | 37 + MAINT.Data-2.5.0/MAINT.Data/man/BestModel-methods.Rd | 2 MAINT.Data-2.5.0/MAINT.Data/man/Cars.Rd | 2 MAINT.Data-2.5.0/MAINT.Data/man/ChinaTemp.Rd | 4 MAINT.Data-2.5.0/MAINT.Data/man/ConfTests-class.Rd | 2 MAINT.Data-2.5.0/MAINT.Data/man/EMControl.Rd | 4 MAINT.Data-2.5.0/MAINT.Data/man/IData-class.Rd | 7 MAINT.Data-2.5.0/MAINT.Data/man/IData.Rd | 90 +-- MAINT.Data-2.5.0/MAINT.Data/man/IDtOutl-class.Rd | 2 MAINT.Data-2.5.0/MAINT.Data/man/IdtE-class.Rd | 6 MAINT.Data-2.5.0/MAINT.Data/man/IdtMANOVA-class.Rd | 10 MAINT.Data-2.5.0/MAINT.Data/man/IdtMclust-class.Rd | 6 MAINT.Data-2.5.0/MAINT.Data/man/IdtMxSNDE-class.Rd | 2 MAINT.Data-2.5.0/MAINT.Data/man/IdtMxtNDE-class.Rd | 2 MAINT.Data-2.5.0/MAINT.Data/man/IdtNandSNDE-class.Rd | 2 MAINT.Data-2.5.0/MAINT.Data/man/IdtOutl-methods.Rd | 6 MAINT.Data-2.5.0/MAINT.Data/man/IdtSNgenda-class.Rd | 4 MAINT.Data-2.5.0/MAINT.Data/man/IdtSNlocda-class.Rd | 4 MAINT.Data-2.5.0/MAINT.Data/man/Idtmclust-methods.Rd | 31 - MAINT.Data-2.5.0/MAINT.Data/man/MAINT.Data-internal.Rd | 20 MAINT.Data-2.5.0/MAINT.Data/man/MAINT.Data-package.Rd | 367 ++++++-------- MAINT.Data-2.5.0/MAINT.Data/man/MANOVA-methods.Rd | 18 MAINT.Data-2.5.0/MAINT.Data/man/MANOVAPermTest.Rd | 48 + MAINT.Data-2.5.0/MAINT.Data/man/RepLOptim.Rd | 6 MAINT.Data-2.5.0/MAINT.Data/man/RobEstControl-class.Rd | 6 MAINT.Data-2.5.0/MAINT.Data/man/RobMxtDEst-methods.Rd | 23 MAINT.Data-2.5.0/MAINT.Data/man/Robda-methods.Rd | 6 MAINT.Data-2.5.0/MAINT.Data/man/coef-methods.Rd | 31 + MAINT.Data-2.5.0/MAINT.Data/man/cor-methods.Rd | 16 MAINT.Data-2.5.0/MAINT.Data/man/fasttle-methods.Rd | 6 MAINT.Data-2.5.0/MAINT.Data/man/fulltle-methods.Rd | 28 - MAINT.Data-2.5.0/MAINT.Data/man/getIdtOutl.Rd | 37 + MAINT.Data-2.5.0/MAINT.Data/man/lda-methods.Rd | 2 MAINT.Data-2.5.0/MAINT.Data/man/mle-methods.Rd | 5 MAINT.Data-2.5.0/MAINT.Data/man/nycflights.Rd | 2 MAINT.Data-2.5.0/MAINT.Data/man/pcoordplot-methos.Rd | 30 + MAINT.Data-2.5.0/MAINT.Data/man/plot-methods.Rd | 45 + MAINT.Data-2.5.0/MAINT.Data/man/plotInfCrt-methos.Rd | 37 + MAINT.Data-2.5.0/MAINT.Data/man/snda-methods.Rd | 12 MAINT.Data-2.5.0/MAINT.Data/man/summary-methods.Rd | 9 MAINT.Data-2.5.0/MAINT.Data/man/testMod-methods.Rd | 4 MAINT.Data-2.5.0/MAINT.Data/src/AuxFoo.cpp | 41 + MAINT.Data-2.5.0/MAINT.Data/src/AuxFoo.h | 3 MAINT.Data-2.5.0/MAINT.Data/src/CEMGauss.cpp | 72 -- MAINT.Data-2.5.0/MAINT.Data/src/MDataGaussLogLik.cpp | 6 MAINT.Data-2.5.0/MAINT.Data/src/MDataGaussLogLik.h | 4 MAINT.Data-2.5.0/MAINT.Data/src/RestCovGrad.cpp | 3 MAINT.Data-2.5.0/MAINT.Data/src/msnCP_dev.cpp | 9 MAINT.Data-2.5.0/MAINT.Data/src/msnCP_dev.h | 7 MAINT.Data-2.5.0/MAINT.Data/src/msnCP_dev_RIntf.cpp | 21 MAINT.Data-2.5.0/MAINT.Data/src/msnCP_dev_grad.cpp | 44 + MAINT.Data-2.5.0/MAINT.Data/src/msnCP_dev_grad.h | 6 MAINT.Data-2.5.0/MAINT.Data/src/registerDynamicSimbol.cpp | 12 87 files changed, 1693 insertions(+), 1045 deletions(-)
Title: Geo-Processing Helper Functions
Description: Helper tools for facilitating basic geo-processing tasks, such as reading/writing
Shapefiles, merging polygons or generating terrain contours.
Author: Andrew Plowright
Maintainer: Andrew Plowright <andrew.plowright@alumni.ubc.ca>
Diff between APfun versions 0.1.4 dated 2019-08-19 and 0.1.6 dated 2020-09-24
DESCRIPTION | 12 +++--- MD5 | 26 +++++++-------- NEWS.md | 28 +++++++++------- R/APcontours.R | 2 - R/APpolygonize.R | 44 ++++++++++++------------- README.md | 14 +++++--- man/APSHPsave.Rd | 50 ++++++++++++++-------------- man/APcontours.Rd | 38 ++++++++++----------- man/APpolyMerge.Rd | 40 +++++++++++------------ man/APpolygonize.Rd | 83 +++++++++++++++++++++++++----------------------- man/AProunder.Rd | 52 +++++++++++++++--------------- man/APtimer.Rd | 42 ++++++++++++------------ man/SHPextensions.Rd | 4 +- man/rasterExtensions.Rd | 4 +- 14 files changed, 229 insertions(+), 210 deletions(-)
Title: Shape Constrained Additive Models
Description: Routines for generalized additive modelling under shape
constraints on the component functions of the linear predictor
(Pya and Wood, 2015) <doi:10.1007/s11222-013-9448-7>.
Models can contain multiple shape constrained (univariate
and/or bivariate) and unconstrained terms. The routines of gam()
in package 'mgcv' are used for setting up the model matrix,
printing and plotting the results. Penalized likelihood
maximization based on Newton-Raphson method is used to fit a
model with multiple smoothing parameter selection by GCV or
UBRE/AIC.
Author: Natalya Pya <nat.pya@gmail.com>
Maintainer: Natalya Pya <nat.pya@gmail.com>
Diff between scam versions 1.2-6 dated 2020-06-10 and 1.2-7 dated 2020-09-24
ChangeLog | 8 +++++ DESCRIPTION | 8 ++--- MD5 | 14 ++++----- R/bfgs.r | 10 +++--- R/predict.scam.R | 80 +++++++++++++++++++++++++++++++++++++----------------- R/scam.r | 36 ++++++++++++++---------- build/partial.rdb |binary man/scam.Rd | 7 ++++ 8 files changed, 108 insertions(+), 55 deletions(-)
Title: An Automated Cleaning Tool for Semantic and Linguistic Data
Description: Implements several functions that automates the cleaning and spell-checking of text data. Also converges, finalizes, removes plurals and continuous strings, and puts text data in binary format for semantic network analysis. Uses the 'SemNetDictionaries' package to make the cleaning process more accurate, efficient, and reproducible.
Author: Alexander P. Christensen [aut, cre]
(<https://orcid.org/0000-0002-9798-7037>)
Maintainer: Alexander P. Christensen <alexpaulchristensen@gmail.com>
Diff between SemNetCleaner versions 1.2.0 dated 2020-06-09 and 1.3.0 dated 2020-09-24
SemNetCleaner-1.2.0/SemNetCleaner/build |only SemNetCleaner-1.2.0/SemNetCleaner/inst/doc |only SemNetCleaner-1.2.0/SemNetCleaner/vignettes |only SemNetCleaner-1.3.0/SemNetCleaner/DESCRIPTION | 16 SemNetCleaner-1.3.0/SemNetCleaner/MD5 | 34 SemNetCleaner-1.3.0/SemNetCleaner/NAMESPACE | 3 SemNetCleaner-1.3.0/SemNetCleaner/NEWS | 17 SemNetCleaner-1.3.0/SemNetCleaner/R/convert2snafu.R |only SemNetCleaner-1.3.0/SemNetCleaner/R/correct.changes.R | 264 +++--- SemNetCleaner-1.3.0/SemNetCleaner/R/open.clean.R |only SemNetCleaner-1.3.0/SemNetCleaner/R/textcleaner.R | 88 +- SemNetCleaner-1.3.0/SemNetCleaner/R/utils-SemNetCleaner.R | 592 +++++++++----- SemNetCleaner-1.3.0/SemNetCleaner/R/zzz.R | 4 SemNetCleaner-1.3.0/SemNetCleaner/data/open.clean.RData |only SemNetCleaner-1.3.0/SemNetCleaner/man/convert2snafu.Rd |only SemNetCleaner-1.3.0/SemNetCleaner/man/correct.changes.Rd | 9 SemNetCleaner-1.3.0/SemNetCleaner/man/open.clean.Rd |only SemNetCleaner-1.3.0/SemNetCleaner/man/textcleaner.Rd | 20 18 files changed, 688 insertions(+), 359 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-16 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-07 0.1.5
2018-04-23 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-01-07 0.1.13
2017-09-01 0.1.11
2017-08-21 0.1.10
2015-09-04 0.1.9
2014-08-04 0.1.8
2012-10-12 0.1.7
2012-01-04 0.1.5
2011-02-17 0.1.3
Title: Data Visualization for Statistics in Social Science
Description: Collection of plotting and table output functions for data
visualization. Results of various statistical analyses (that are commonly used
in social sciences) can be visualized using this package, including simple and
cross tabulated frequencies, histograms, box plots, (generalized) linear models,
mixed effects models, principal component analysis and correlation matrices,
cluster analyses, scatter plots, stacked scales, effects plots of regression
models (including interaction terms) and much more. This package supports
labelled data.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>),
Alexander Bartel [ctb] (<https://orcid.org/0000-0002-1280-6138>),
Carsten Schwemmer [ctb],
Chuck Powell [ctb] (<https://orcid.org/0000-0002-3606-2188>),
Amir Djalovski [ctb],
Johannes Titz [ctb] (<https://orcid.org/0000-0002-1102-5719>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjPlot versions 2.8.4 dated 2020-05-24 and 2.8.5 dated 2020-09-24
DESCRIPTION | 15 MD5 | 130 ++++---- NAMESPACE | 4 NEWS.md | 17 + R/html_print.R | 14 R/plot_grpfrq.R | 10 R/plot_model.R | 5 R/plot_models.R | 16 R/plot_stackfrq.R | 27 - R/plot_type_int.R | 12 R/sjPlotPearsonsChi2Test.R | 2 R/tab_itemscale.R | 2 R/tab_model.R | 148 ++++++--- R/tidiers.R | 11 README.md | 4 build/vignette.rds |binary inst/doc/blackwhitefigures.html | 136 +++++--- inst/doc/custplot.Rmd | 2 inst/doc/custplot.html | 304 ++++++++++-------- inst/doc/plot_interactions.Rmd | 2 inst/doc/plot_interactions.html | 124 +++++-- inst/doc/plot_likert_scales.html | 172 ++++++---- inst/doc/plot_marginal_effects.Rmd | 2 inst/doc/plot_marginal_effects.html | 142 +++++--- inst/doc/plot_model_estimates.Rmd | 2 inst/doc/plot_model_estimates.html | 298 ++++++++++-------- inst/doc/sjtitemanalysis.html | 82 +++-- inst/doc/tab_bayes.html | 284 +++++++++-------- inst/doc/tab_mixed.html | 129 ++++--- inst/doc/tab_model_estimates.html | 318 ++++++++++--------- inst/doc/tab_model_robust.html | 284 +++++++++++------ inst/doc/table_css.html | 272 +++++++++------- man/dist_chisq.Rd | 130 ++++---- man/dist_f.Rd | 122 +++---- man/dist_norm.Rd | 120 +++---- man/dist_t.Rd | 116 +++---- man/plot_frq.Rd | 4 man/plot_gpt.Rd | 286 ++++++++--------- man/plot_grid.Rd | 118 +++---- man/plot_grpfrq.Rd | 528 ++++++++++++++++---------------- man/plot_kfold_cv.Rd | 118 +++---- man/plot_model.Rd | 2 man/plot_residuals.Rd | 140 ++++---- man/plot_scatter.Rd | 308 +++++++++---------- man/plot_stackfrq.Rd | 278 ++++++++--------- man/plot_xtab.Rd | 462 ++++++++++++++-------------- man/save_plot.Rd | 124 +++---- man/set_theme.Rd | 582 ++++++++++++++++++------------------ man/sjPlot-package.Rd | 10 man/sjPlot-themes.Rd | 304 +++++++++--------- man/sjp.aov1.Rd | 234 +++++++------- man/sjp.chi2.Rd | 125 +++---- man/sjp.poly.Rd | 278 ++++++++--------- man/sjplot.Rd | 162 +++++----- man/tab_corr.Rd | 308 +++++++++---------- man/tab_df.Rd | 310 +++++++++---------- man/tab_fa.Rd | 268 ++++++++-------- man/tab_itemscale.Rd | 2 man/tab_model.Rd | 25 - man/tab_pca.Rd | 266 ++++++++-------- man/tab_xtab.Rd | 4 man/view_df.Rd | 298 +++++++++--------- vignettes/custplot.Rmd | 2 vignettes/plot_interactions.Rmd | 2 vignettes/plot_marginal_effects.Rmd | 2 vignettes/plot_model_estimates.Rmd | 2 66 files changed, 4758 insertions(+), 4252 deletions(-)
Title: Prediction Model Selection and Performance Evaluation in
Multiple Imputed Datasets
Description: Pooling, backward and forward selection of logistic and Cox regression models in
multiply imputed datasets. Backward and forward selection can be done
from the pooled model using Rubin's Rules (RR), the D1, D2, D3 and
the median p-values method. This is also possible for Mixed models.
The models can contain continuous, dichotomous, categorical and restricted
cubic spline predictors and interaction terms between all these type of predictors.
The stability of the models can be evaluated using bootstrapping and cluster
bootstrapping. The package further contains functions to pool the model performance
as ROC/AUC, R-squares, scaled Brier score and calibration plots for logistic
regression models. Internal validation can be done with cross-validation or bootstrapping.
The adjusted intercept after shrinkage of pooled regression coefficients can be obtained.
Backward and forward selection as part of internal validation is possible.
Also a function to externally validate logistic prediction models in multiple imputed
datasets is available.
Eekhout (2017) <doi:10.1186/s12874-017-0404-7>.
Wiel (2009) <doi:10.1093/biostatistics/kxp011>.
Marshall (2009) <doi:10.1186/1471-2288-9-57>.
Author: Martijn Heymans [cre, aut] (<https://orcid.org/0000-0002-3889-0921>),
Iris Eekhout [ctb]
Maintainer: Martijn Heymans <mw.heymans@amsterdamumc.nl>
Diff between psfmi versions 0.2.0 dated 2020-02-03 and 0.5.0 dated 2020-09-24
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Title: An Import Mechanism for R
Description: Alternative mechanism for importing objects from packages
and R modules. The syntax allows for importing multiple objects with a single
command in an expressive way. The import package bridges some of the gap
between using library (or require) and direct (single-object) imports.
Furthermore the imported objects are not placed in the current environment.
Author: Stefan Milton Bache [aut],
Magnus Thor Torfason [aut, cre]
Maintainer: Magnus Thor Torfason <m@zulutime.net>
Diff between import versions 1.1.0 dated 2015-06-21 and 1.2.0 dated 2020-09-24
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Title: Interpretable Machine Learning
Description: Interpretability methods to analyze the behavior
and predictions of any machine learning model. Implemented methods
are: Feature importance described by Fisher et al. (2018)
<arXiv:1801.01489>, accumulated local effects plots described by Apley
(2018) <arXiv:1612.08468>, partial dependence plots described by
Friedman (2001) <www.jstor.org/stable/2699986>, individual
conditional expectation ('ice') plots described by Goldstein et al.
(2013) <doi:10.1080/10618600.2014.907095>, local models (variant of
'lime') described by Ribeiro et. al (2016) <arXiv:1602.04938>, the
Shapley Value described by Strumbelj et. al (2014)
<doi:10.1007/s10115-013-0679-x>, feature interactions described by
Friedman et. al <doi:10.1214/07-AOAS148> and tree surrogate models.
Author: Christoph Molnar [aut, cre],
Patrick Schratz [aut] (<https://orcid.org/0000-0003-0748-6624>)
Maintainer: Christoph Molnar <christoph.molnar@gmail.com>
Diff between iml versions 0.10.0 dated 2020-03-26 and 0.10.1 dated 2020-09-24
DESCRIPTION | 20 MD5 | 31 - NAMESPACE | 2 NEWS.md | 30 - R/FeatureEffects.R | 2 R/FeatureImp.R | 4 R/Predictor.R | 5 R/iml.R | 4 build/vignette.rds |binary inst/CITATION | 2 inst/doc/intro.html | 807 +++++++++++++++++++--------------------- inst/doc/parallel.html | 609 ++++++++++++------------------ tests/testthat/Rplots.pdf |binary tests/testthat/check-mlr3.R |only tests/testthat/helper.R | 6 tests/testthat/setup.R | 25 - tests/testthat/test-Predictor.R | 10 17 files changed, 743 insertions(+), 814 deletions(-)
Title: Genetic Data Handling (QC, GRM, LD, PCA) & Linear Mixed Models
Description: Manipulation of genetic data (SNPs). Computation of GRM and dominance matrix, LD, heritability with efficient algorithms for linear mixed model (AIREML). Dandine et al <doi:10.1159/000488519>.
Author: Hervé Perdry [cre, aut, cph],
Claire Dandine-Roulland [aut, cph],
Deepak Bandyopadhyay [cph] (C++ gzstream class),
Lutz Kettner [cph] (C++ gzstream class)
Maintainer: Hervé Perdry <herve.perdry@u-psud.fr>
Diff between gaston versions 1.5.6 dated 2020-02-26 and 1.5.7 dated 2020-09-24
gaston-1.5.6/gaston/src/Parallel.h |only gaston-1.5.6/gaston/src/ai-reml-1k-covar.h |only gaston-1.5.6/gaston/src/ai-reml-1k.h |only gaston-1.5.6/gaston/src/ai-reml-logit-1k-covar.h |only gaston-1.5.6/gaston/src/ai-reml-logit-1k.h |only gaston-1.5.6/gaston/src/ai-reml-logit-nk-covar.h |only gaston-1.5.6/gaston/src/ai-reml-logit-nk.h |only gaston-1.5.6/gaston/src/ai-reml-nk-covar.h |only gaston-1.5.6/gaston/src/ai-reml-nk.h |only gaston-1.5.6/gaston/src/any.h |only gaston-1.5.6/gaston/src/diago2.h |only gaston-1.5.6/gaston/src/diago2_full.h |only gaston-1.5.6/gaston/src/diago2_full_nocovar.h |only gaston-1.5.6/gaston/src/diago2_nocovar.h |only gaston-1.5.6/gaston/src/flip_strand.h |only gaston-1.5.6/gaston/src/gzstream.h |only gaston-1.5.6/gaston/src/lmm_diago_min_max_h2.h |only gaston-1.5.6/gaston/src/logit_model.h |only gaston-1.5.6/gaston/src/loubar.h |only gaston-1.5.6/gaston/src/m4_kinship_type.h |only gaston-1.5.6/gaston/src/m4_ld.h |only gaston-1.5.6/gaston/src/matrix-varia.h |only gaston-1.5.6/gaston/src/matrix4.h |only gaston-1.5.6/gaston/src/optimize_2.h |only gaston-1.5.6/gaston/src/snp_hash.h |only gaston-1.5.7/gaston/DESCRIPTION | 8 gaston-1.5.7/gaston/MD5 | 81 +-- gaston-1.5.7/gaston/NEWS | 3 gaston-1.5.7/gaston/R/ld_plot.r | 2 gaston-1.5.7/gaston/R/logistic_mm_aireml.r | 16 gaston-1.5.7/gaston/TODO | 11 gaston-1.5.7/gaston/build/vignette.rds |binary gaston-1.5.7/gaston/inst/doc/gaston-faq.pdf |binary gaston-1.5.7/gaston/inst/doc/gaston.pdf |binary gaston-1.5.7/gaston/inst/include/gaston/Parallel.h |only gaston-1.5.7/gaston/inst/include/gaston/ai-reml-1k-covar.h | 3 gaston-1.5.7/gaston/inst/include/gaston/ai-reml-logit-1k-covar.h | 28 - gaston-1.5.7/gaston/inst/include/gaston/ai-reml-logit-1k.h | 32 + gaston-1.5.7/gaston/inst/include/gaston/ai-reml-logit-nk-covar.h | 49 +- gaston-1.5.7/gaston/inst/include/gaston/ai-reml-logit-nk.h | 48 +- gaston-1.5.7/gaston/inst/include/gaston/any_nan.h |only gaston-1.5.7/gaston/inst/include/gaston/flip_strand.h |only gaston-1.5.7/gaston/inst/include/gaston/gzstream.h |only gaston-1.5.7/gaston/inst/include/gaston/gzstream0.h |only gaston-1.5.7/gaston/inst/include/gaston/logit_model.h | 1 gaston-1.5.7/gaston/inst/include/gaston/loubar.h |only gaston-1.5.7/gaston/inst/include/gaston/m4_ld.h |only gaston-1.5.7/gaston/inst/include/gaston/snp_hash.h | 128 ++--- gaston-1.5.7/gaston/inst/include/gaston/string_equal.h |only gaston-1.5.7/gaston/man/logistic.mm.aireml.Rd | 11 gaston-1.5.7/gaston/src/Makevars | 2 gaston-1.5.7/gaston/src/export-aireml-logit-1k.cpp | 33 - gaston-1.5.7/gaston/src/export-aireml-logit-nk.cpp | 91 ++-- gaston-1.5.7/gaston/src/gaston_init.c | 218 ++++------ gaston-1.5.7/gaston/src/gwas_lmm_diago_lrt.cpp | 2 gaston-1.5.7/gaston/src/gwas_lmm_diago_wald.cpp | 2 gaston-1.5.7/gaston/src/gzstream.cpp | 167 ------- gaston-1.5.7/gaston/src/snp_match.cpp | 16 58 files changed, 423 insertions(+), 529 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-01-18 0.1.1
2018-06-12 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-07 0.2.4
2019-12-17 0.2.3
2019-06-05 0.2.2
2017-09-25 0.2.1
2017-07-17 0.2.0
2017-03-16 0.1.0
Title: Shrinkage t Statistic and Correlation-Adjusted t-Score
Description: Implements the "shrinkage t" statistic
introduced in Opgen-Rhein and Strimmer (2007) <DOI:10.2202/1544-6115.1252> and
a shrinkage estimate of the "correlation-adjusted t-score" (CAT score) described
in Zuber and Strimmer (2009) <DOI:10.1093/bioinformatics/btp460>.
It also offers a convenient interface to a number of other regularized
t-statistics commonly employed in high-dimensional case-control studies.
Author: Rainer Opgen-Rhein, Verena Zuber, and Korbinian Strimmer.
Maintainer: Korbinian Strimmer <strimmerlab@gmail.com>
Diff between st versions 1.2.5 dated 2015-07-08 and 1.2.6 dated 2020-09-24
DESCRIPTION | 24 ++++++++++++------------ MD5 | 22 +++++++++++----------- NEWS | 5 +++++ R/modt.R | 4 ++-- man/cst.stat.Rd | 4 ++-- man/diffmean.stat.Rd | 2 +- man/lait.stat.Rd | 2 +- man/regularizedt.Rd | 4 ++-- man/shrinkcat.stat.Rd | 4 ++-- man/shrinkt.stat.Rd | 4 ++-- man/st.package.Rd | 4 ++-- man/studentt.stat.Rd | 2 +- 12 files changed, 43 insertions(+), 38 deletions(-)
Title: Functions for Working with 'Eprime' Text Files
Description: 'Eprime' is a set of programs for administering
psychological experiments by computer. This package provides functions
for loading, parsing, filtering and exporting data in the text files
produced by 'Eprime' experiments.
Author: Tristan Mahr [aut, cre] (<https://orcid.org/0000-0002-8890-5116>)
Maintainer: Tristan Mahr <tristan.mahr@wisc.edu>
Diff between rprime versions 0.1.0 dated 2015-05-29 and 0.1.2 dated 2020-09-24
rprime-0.1.0/rprime/LICENSE |only rprime-0.1.0/rprime/R/rprime.R |only rprime-0.1.0/rprime/man/count_tabs.Rd |only rprime-0.1.0/rprime/man/make_filter.Rd |only rprime-0.1.0/rprime/man/make_ranges.Rd |only rprime-0.1.0/rprime/man/parse_chunks.Rd |only rprime-0.1.0/rprime/man/tidy.Rd |only rprime-0.1.2/rprime/DESCRIPTION | 36 rprime-0.1.2/rprime/MD5 | 73 - rprime-0.1.2/rprime/NAMESPACE | 7 rprime-0.1.2/rprime/NEWS.md |only rprime-0.1.2/rprime/R/extract.R | 10 rprime-0.1.2/rprime/R/filter.R | 5 rprime-0.1.2/rprime/R/frames.R | 11 rprime-0.1.2/rprime/R/load.R | 10 rprime-0.1.2/rprime/R/patterns.R | 1 rprime-0.1.2/rprime/R/rprime-package.R |only rprime-0.1.2/rprime/build/vignette.rds |binary rprime-0.1.2/rprime/inst/doc/multiple-files.R | 10 rprime-0.1.2/rprime/inst/doc/multiple-files.html | 462 ++++++++-- rprime-0.1.2/rprime/inst/doc/parsing-summary.R | 14 rprime-0.1.2/rprime/inst/doc/parsing-summary.Rmd | 10 rprime-0.1.2/rprime/inst/doc/parsing-summary.html | 484 ++++++++--- rprime-0.1.2/rprime/inst/doc/quick-start-demo.R | 30 rprime-0.1.2/rprime/inst/doc/quick-start-demo.Rmd | 41 rprime-0.1.2/rprime/inst/doc/quick-start-demo.html | 902 +++++++++++++-------- rprime-0.1.2/rprime/man/EprimeFrame.Rd | 3 rprime-0.1.2/rprime/man/FrameList.Rd | 35 rprime-0.1.2/rprime/man/as.EprimeFrame.Rd | 3 rprime-0.1.2/rprime/man/as.FrameList.Rd | 3 rprime-0.1.2/rprime/man/extract_chunks.Rd | 7 rprime-0.1.2/rprime/man/filter_in.Rd | 5 rprime-0.1.2/rprime/man/keep_levels.Rd | 5 rprime-0.1.2/rprime/man/list_functions.Rd | 7 rprime-0.1.2/rprime/man/listify.Rd | 3 rprime-0.1.2/rprime/man/preview_eprime.Rd | 5 rprime-0.1.2/rprime/man/read_eprime.Rd | 3 rprime-0.1.2/rprime/man/rprime.Rd | 21 rprime-0.1.2/rprime/man/to_data_frame.Rd | 3 rprime-0.1.2/rprime/tests/testthat/test-load.R | 4 rprime-0.1.2/rprime/vignettes/parsing-summary.Rmd | 10 rprime-0.1.2/rprime/vignettes/quick-start-demo.Rmd | 41 42 files changed, 1563 insertions(+), 701 deletions(-)
Title: Sampling from Order Statistics of New Families of Distributions
Description: Set of tools to generate samples of order statistics and others quantities of interest from new families of distributions.
The main references for this package are: Gentle, J. (2009), Computational Statistics, Springer-Verlag;
Naradajah, S. and Rocha, R. (2016), <DOI:10.18637/jss.v069.i10> and
Stasinopoulos, M. and Rigby, R. (2015), <DOI:10.1111/j.1467-9876.2005.00510.x>.
The families of distributions are: Marshall Olkin G distributions, exponentiated G distributions, beta G distributions, gamma G distributions, Kumaraswamy G distributions, generalized beta G distributions,
beta extended G distributions, gamma G distributions, gamma uniform G distributions, beta exponential G distributions, Weibull G distributions, log gamma G I distributions, log gamma G II distributions,
exponentiated generalized G distributions, exponentiated Kumaraswamy G distributions, geometric exponential Poisson G distributions, truncated-exponential skew-symmetric G distributions, modified beta G distributions,
and exponentiated exponential Poisson G distributions, Poisson-inverse gaussian distribution, Skew normal type 1 distributions, Skew student t distribution, Sinh-Arcsinh distribution, Sichel distribution and Zero inflated Poisson.
Author: Carlos Alberto Cardozo Delgado
Maintainer: Carlos Alberto Cardozo Delgado <cardozorpackages@gmail.com>
Diff between orders versions 0.1.3 dated 2019-05-16 and 0.1.4 dated 2020-09-24
DESCRIPTION | 19 +++--- MD5 | 16 +++++ NAMESPACE | 130 ++++++++++++++++++++++++++--------------------- R/order_pig.R |only R/order_sichel.R |only R/order_sinharcsinh.R |only R/order_snormal1.R |only R/order_sstudentt.R |only R/order_zip.R |only man/order_pig.Rd |only man/order_sichel.Rd |only man/order_sinharcsinh.Rd |only man/order_snormal1.Rd |only man/order_sstudentt.Rd |only man/order_zip.Rd |only 15 files changed, 97 insertions(+), 68 deletions(-)
Title: Prioritization of Candidate Cancer Subtype Specific Drugs
Description: A systematic biology tool was developed to prioritize cancer subtype-specific drugs by integrating genetic perturbation, drug action, biological pathway, and cancer subtype.
The capabilities of this tool include inferring patient-specific subpathway activity profiles in the context of gene expression profiles with subtype labels, calculating differentially
expressed subpathways based on cultured human cells treated with drugs in the 'cMap' (connectivity map) database, prioritizing cancer subtype specific drugs according to drug-disease
reverse association score based on subpathway, and visualization of results (Castelo (2013) <doi:10.1186/1471-2105-14-7>; Han et al (2019) <doi:10.1093/bioinformatics/btz894>; Lamb and Justin (2006) <DOI:10.1126/science.1132939>).
Author: Xudong Han,
Junwei Han,
Chonghui Liu
Maintainer: Junwei Han <hanjunwei1981@163.com>
Diff between SubtypeDrug versions 0.1.1 dated 2020-06-26 and 0.1.2 dated 2020-09-24
SubtypeDrug-0.1.1/SubtypeDrug/R/OCSSD.R |only SubtypeDrug-0.1.1/SubtypeDrug/R/plotDrugStructure.R |only SubtypeDrug-0.1.1/SubtypeDrug/man/OCSSD.Rd |only SubtypeDrug-0.1.1/SubtypeDrug/man/plotDrugStructure.Rd |only SubtypeDrug-0.1.2/SubtypeDrug/DESCRIPTION | 6 SubtypeDrug-0.1.2/SubtypeDrug/MD5 | 48 ++--- SubtypeDrug-0.1.2/SubtypeDrug/NAMESPACE | 4 SubtypeDrug-0.1.2/SubtypeDrug/R/AccumulateNormal.R | 2 SubtypeDrug-0.1.2/SubtypeDrug/R/Disease_drugs.R | 4 SubtypeDrug-0.1.2/SubtypeDrug/R/PrioSubtypeDrug.R |only SubtypeDrug-0.1.2/SubtypeDrug/R/getDrugSpw.R | 4 SubtypeDrug-0.1.2/SubtypeDrug/R/getDrugStructure.R |only SubtypeDrug-0.1.2/SubtypeDrug/R/plotDScoreHeatmap.R | 39 ++-- SubtypeDrug-0.1.2/SubtypeDrug/R/plotDSpwHeatmap.R | 25 +-- SubtypeDrug-0.1.2/SubtypeDrug/R/plotGlobalGraph.R | 19 +- SubtypeDrug-0.1.2/SubtypeDrug/build/vignette.rds |binary SubtypeDrug-0.1.2/SubtypeDrug/data/Colork.rda |binary SubtypeDrug-0.1.2/SubtypeDrug/inst/doc/vignette.R | 5 SubtypeDrug-0.1.2/SubtypeDrug/inst/doc/vignette.Rmd | 110 ++++++------- SubtypeDrug-0.1.2/SubtypeDrug/inst/doc/vignette.html | 139 ++++++++--------- SubtypeDrug-0.1.2/SubtypeDrug/man/AccumulateNormal.Rd | 2 SubtypeDrug-0.1.2/SubtypeDrug/man/Disease_drugs.Rd | 4 SubtypeDrug-0.1.2/SubtypeDrug/man/PrioSubtypeDrug.Rd |only SubtypeDrug-0.1.2/SubtypeDrug/man/getDrugStructure.Rd |only SubtypeDrug-0.1.2/SubtypeDrug/man/plotDScoreHeatmap.Rd | 39 ++-- SubtypeDrug-0.1.2/SubtypeDrug/man/plotDSpwHeatmap.Rd | 6 SubtypeDrug-0.1.2/SubtypeDrug/man/plotGlobalGraph.Rd | 4 SubtypeDrug-0.1.2/SubtypeDrug/vignettes/references.bib | 33 ++++ SubtypeDrug-0.1.2/SubtypeDrug/vignettes/vignette.Rmd | 110 ++++++------- 29 files changed, 317 insertions(+), 286 deletions(-)
Title: R Script Visualization in Cytoscape
Description: Displays the content of a R script into the 'Cytoscape' network-visualization app <https://cytoscape.org/>.
Author: Raphael Bonnet [aut, cre], Marion Guernoté [ctb], Terry Gouin [ctb], Maxime Laurens [ctb], Thibault Meekel [ctb], Jean-François Peyron[aut,ths]
Maintainer: Raphaël Bonnet <raphael.bonnet@univ-cotedazur.fr>
Diff between ScriptMapR versions 0.0.2 dated 2020-09-21 and 0.0.3 dated 2020-09-24
DESCRIPTION | 8 MD5 | 6 R/scriptmapr.R | 3613 ++++++++++++++++++++++++------------------------ README.md |only inst/extdata/parsed.RDS |only 5 files changed, 1842 insertions(+), 1785 deletions(-)
Title: Random Chuck Norris Facts
Description: R functions for generating and/or displaying random Chuck Norris
facts. Based on data from the 'Internet Chuck Norris database' ('ICNDb').
Author: Brandon Greenwell [aut, cre]
Maintainer: Brandon Greenwell <greenwell.brandon@gmail.com>
Diff between roundhouse versions 0.0.1 dated 2018-09-16 and 0.0.2 dated 2020-09-24
roundhouse-0.0.1/roundhouse/man/fetch_categories.Rd |only roundhouse-0.0.1/roundhouse/tests/testthat |only roundhouse-0.0.1/roundhouse/tests/testthat.R |only roundhouse-0.0.2/roundhouse/DESCRIPTION | 19 +-- roundhouse-0.0.2/roundhouse/MD5 | 29 +++-- roundhouse-0.0.2/roundhouse/NAMESPACE | 4 roundhouse-0.0.2/roundhouse/NEWS.md | 20 +++ roundhouse-0.0.2/roundhouse/R/facts.R |only roundhouse-0.0.2/roundhouse/R/kick.R | 6 - roundhouse-0.0.2/roundhouse/R/punch.R |only roundhouse-0.0.2/roundhouse/R/random_fact.R | 114 ++++---------------- roundhouse-0.0.2/roundhouse/R/suggest_new_fact.R |only roundhouse-0.0.2/roundhouse/data |only roundhouse-0.0.2/roundhouse/inst |only roundhouse-0.0.2/roundhouse/man/facts.Rd |only roundhouse-0.0.2/roundhouse/man/figures |only roundhouse-0.0.2/roundhouse/man/kick.Rd | 12 +- roundhouse-0.0.2/roundhouse/man/punch.Rd |only roundhouse-0.0.2/roundhouse/man/random_fact.Rd | 16 ++ roundhouse-0.0.2/roundhouse/man/suggest_new_fact.Rd |only roundhouse-0.0.2/roundhouse/tests/tinytest.R |only 21 files changed, 102 insertions(+), 118 deletions(-)
Title: The Lorentz Transform in Relativistic Physics
Description: The Lorentz transform in special relativity; also the gyrogroup structure of three-velocities. Includes active and passive transforms and the ability to use units in which the speed of light is not one. For general relativity, see the
'schwarzschild' package.
Author: Robin K. S. Hankin [aut, cre] (<https://orcid.org/0000-0001-5982-0415>)
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between lorentz versions 1.0-2 dated 2019-03-21 and 1.0-5 dated 2020-09-24
lorentz-1.0-2/lorentz/tests/aaa.R |only lorentz-1.0-2/lorentz/tests/aab.R |only lorentz-1.0-5/lorentz/DESCRIPTION | 15 - lorentz-1.0-5/lorentz/MD5 | 71 ++++--- lorentz-1.0-5/lorentz/NAMESPACE | 10 - lorentz-1.0-5/lorentz/R/gyrogroup.R | 191 +++++++++++++------- lorentz-1.0-5/lorentz/R/nullvector.R | 10 - lorentz-1.0-5/lorentz/README.md |only lorentz-1.0-5/lorentz/build/partial.rdb |binary lorentz-1.0-5/lorentz/build/vignette.rds |binary lorentz-1.0-5/lorentz/inst/JOC |only lorentz-1.0-5/lorentz/inst/distributive_search.R | 40 +++- lorentz-1.0-5/lorentz/inst/doc/lorentz.R | 218 ++++++++++++++--------- lorentz-1.0-5/lorentz/inst/doc/lorentz.Rnw | 175 +++++++++++++----- lorentz-1.0-5/lorentz/inst/doc/lorentz.pdf |binary lorentz-1.0-5/lorentz/inst/mobius.Rmd |only lorentz-1.0-5/lorentz/man/3vel.Rd | 3 lorentz-1.0-5/lorentz/man/4mom.Rd | 36 ++- lorentz-1.0-5/lorentz/man/4vel.Rd | 28 +- lorentz-1.0-5/lorentz/man/Extract.Rd | 5 lorentz-1.0-5/lorentz/man/as.matrix.Rd |only lorentz-1.0-5/lorentz/man/boost.Rd | 55 +++-- lorentz-1.0-5/lorentz/man/c.Rd | 9 lorentz-1.0-5/lorentz/man/comm_fail.Rd | 12 - lorentz-1.0-5/lorentz/man/cosines.Rd |only lorentz-1.0-5/lorentz/man/galileo.Rd |only lorentz-1.0-5/lorentz/man/gam.Rd | 9 lorentz-1.0-5/lorentz/man/gyr.Rd | 5 lorentz-1.0-5/lorentz/man/r3vel.Rd | 28 ++ lorentz-1.0-5/lorentz/man/reflect.Rd | 30 ++- lorentz-1.0-5/lorentz/man/seq.Rd | 2 lorentz-1.0-5/lorentz/man/set.Rd | 13 - lorentz-1.0-5/lorentz/man/sol.Rd | 25 +- lorentz-1.0-5/lorentz/tests/testthat |only lorentz-1.0-5/lorentz/tests/testthat.R |only lorentz-1.0-5/lorentz/vignettes/f-002.pdf |only lorentz-1.0-5/lorentz/vignettes/lorentz.Rnw | 175 +++++++++++++----- lorentz-1.0-5/lorentz/vignettes/lorentz.bib | 5 38 files changed, 789 insertions(+), 381 deletions(-)
Title: Weighted Logrank Tests and NPMLE for Interval Censored Data
Description: Functions to fit nonparametric survival curves, plot them, and perform logrank or Wilcoxon type tests.
Author: Michael P. Fay
Maintainer: Michael P. Fay <mfay@niaid.nih.gov>
Diff between interval versions 1.1-0.1 dated 2014-01-22 and 1.1-0.7 dated 2020-09-24
DESCRIPTION | 10 ++--- MD5 | 25 +++++++------- NAMESPACE | 7 +++- NEWS | 12 ++++++ R/onLoad.R |only build/vignette.rds |binary inst/CITATION | 4 +- inst/doc/intervalCensoring.R | 70 ++++++++++++++++++++-------------------- inst/doc/intervalCensoring.Rnw | 1 inst/doc/intervalCensoring.pdf |binary man/icfit.Rd | 9 ++--- man/ictest.Rd | 6 +-- man/interval-package.Rd | 6 +-- vignettes/intervalCensoring.Rnw | 1 14 files changed, 84 insertions(+), 67 deletions(-)
Title: Graph-Based Change-Point Detection (g-Segmentation)
Description: Using an approach based on similarity graph to estimate change-point(s) and the corresponding p-values. Can be applied to any type of data (high-dimensional, non-Euclidean, etc.) as long as a reasonable similarity measure is available.
Author: Hao Chen, Nancy R. Zhang, Lynna Chu, and Hoseung Song
Maintainer: Hao Chen <hxchen@ucdavis.edu>
Diff between gSeg versions 0.7 dated 2020-04-12 and 1.0 dated 2020-09-24
DESCRIPTION | 10 +++++----- MD5 | 15 ++++++++++----- NAMESPACE | 2 +- R/NNL.R |only R/gSeg_discrete.R |only man/gSeg-package.Rd | 34 ++++++++++++++++++++++++++++++---- man/gseg1.Rd | 4 +--- man/gseg1_discrete.Rd |only man/gseg2.Rd | 4 +--- man/gseg2_discrete.Rd |only man/nnl.Rd |only 11 files changed, 48 insertions(+), 21 deletions(-)
Title: S3 Generics for Bayesian Analyses
Description: Provides S3 generic methods and some default implementations
for Bayesian analyses that generate Markov Chain Monte Carlo (MCMC) samples.
The purpose of 'universals' is to reduce package dependencies and conflicts.
The 'nlist' package implements many of the methods for its 'nlist' class.
Author: Joe Thorley [aut, cre] (<https://orcid.org/0000-0002-7683-4592>),
Kirill Müller [ctb] (<https://orcid.org/0000-0002-1416-3412>),
Poisson Consulting [cph, fnd]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between universals versions 0.0.3 dated 2020-07-08 and 0.0.4 dated 2020-09-24
DESCRIPTION | 11 +++--- MD5 | 62 +++++++++++++++++----------------- NAMESPACE | 2 + NEWS.md | 4 ++ R/bind-iterations.R |only R/collapse-chains.R | 15 ++++++++ R/estimates.R | 6 --- R/nchains.R | 7 --- R/ndims.R | 1 R/niters.R | 5 -- R/npdims.R | 5 -- R/nsams.R | 9 ---- R/nsims.R | 5 -- R/nterms.R | 10 ----- R/pars.R | 4 -- R/pdims.R | 5 -- R/set-pars.R | 7 --- R/split-chains.R | 6 --- man/bind_chains.Rd | 1 man/bind_iterations.Rd |only man/collapse_chains.Rd | 4 ++ man/estimates.Rd | 10 ----- man/nchains.Rd | 10 ----- man/niters.Rd | 8 ---- man/npdims.Rd | 8 ---- man/nsams.Rd | 12 ------ man/nsims.Rd | 8 ---- man/nterms.Rd | 13 ------- man/pars.Rd | 7 --- man/pdims.Rd | 8 ---- man/set_pars.Rd | 10 ----- man/split_chains.Rd | 10 ----- tests/testthat/test-collapse-chains.R | 1 33 files changed, 67 insertions(+), 207 deletions(-)
Title: Time Series, Analysis and Application
Description: Accompanies the book Rainer Schlittgen and Cristina Sattarhoff (2020) <https://www.degruyter.com/view/title/575978> "Angewandte Zeitreihenanalyse mit R, 4. Auflage" . The package contains the time series and functions used therein. It was developed over many years teaching courses about time series analysis.
Author: Rainer Schlittgen
Maintainer: Rainer Schlittgen <R.Schlittgen@t-online.de>
Diff between tsapp versions 1.0.1 dated 2020-09-21 and 1.0.2 dated 2020-09-24
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/specialfun.r | 4 ++-- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Score Optimal Probabilistic Forecast Reconciliation
Description: Training of reconciliation weights for probabilistic forecasts to optimise total energy (or variogram) score using Stochastic Gradient Descent with automatically differentiated gradients. See Panagiotelis, Gamakumara, Athanasopoulos and Hyndman, (2020) <https://www.monash.edu/business/ebs/research/publications/ebs/wp26-2020.pdf> for a description of the methods.
Author: Anastasios Panagiotelis [aut, cre]
(<https://orcid.org/0000-0001-8678-7294>)
Maintainer: Anastasios Panagiotelis <anastasios.panagiotelis@sydney.edu.au>
Diff between ProbReco versions 0.1.0 dated 2020-08-18 and 0.1.0.1 dated 2020-09-24
DESCRIPTION | 13 MD5 | 22 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/ProbReco-with-fable.html | 575 +++++++++++++++++++++++++++----------- inst/doc/ProbReco.html | 472 ++++++++++++++++++++++--------- man/ProbReco-package.Rd | 2 man/inscoreopt.Rd | 22 + man/scoreopt.Rd | 19 - man/scoreopt.control.Rd | 16 - man/sim_hierarchy.Rd | 6 man/total_score.Rd | 9 12 files changed, 836 insertions(+), 320 deletions(-)
Title: Tools for Inference in the Presence of a Monotone Likelihood
Description: Proportional hazards estimation in the presence of a partially monotone likelihood has difficulties, in that finite estimators do not exist. These difficulties are related to those arising from logistic and multinomial regression. References for methods are given in the separate function documents.
Author: John E. Kolassa and Juan Zhang
Maintainer: John E. Kolassa <kolassa@stat.rutgers.edu>
Diff between PHInfiniteEstimates versions 1.3 dated 2020-03-29 and 1.5 dated 2020-09-24
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- NAMESPACE | 4 +--- R/convertmtol.R | 1 + R/testp.R | 8 ++++++-- R/voter.ml.R | 1 + build/partial.rdb |binary inst/REFERENCES.bib | 2 +- man/convertmtol.Rd | 1 + man/voter.ml.Rd | 1 + 10 files changed, 26 insertions(+), 20 deletions(-)
More information about PHInfiniteEstimates at CRAN
Permanent link
Title: Mock the Unix Make Utility
Description: Use R as a minimal build system. This might come in
handy if you are developing R packages and can not use a proper build
system. Stay away if you can (use a proper build system).
Author: Andreas Dominik Cullmann [aut, cre]
Maintainer: Andreas Dominik Cullmann <fvafrcu@mailbox.org>
Diff between fakemake versions 1.7.1 dated 2020-04-12 and 1.7.2 dated 2020-09-24
DESCRIPTION | 8 MD5 | 14 NEWS.md | 5 R/tools.R | 2 build/vignette.rds |binary inst/doc/An_Introduction_to_fakemake.html | 421 ++++++++++++++++++++++-------- inst/doc/Building_Packages.html | 371 ++++++++++++++++++++------ man/check_archive.Rd | 2 8 files changed, 625 insertions(+), 198 deletions(-)
Title: Extract Subsequences from GenBank Annotations
Description: Extraction of subsequences into FASTA files from GenBank annotations where gene names may vary among accessions. Borstein & O'Meara (2018) <doi:10.7717/peerj.5179>.
Author: Samuel R. Borstein <sam@borstein.com>, Brian O'Meara <bomeara@utk.edu>
Maintainer: Samuel R. Borstein <sam@borstein.com>
Diff between AnnotationBustR versions 1.2 dated 2018-04-09 and 1.3.0 dated 2020-09-24
DESCRIPTION | 14 - MD5 | 37 +-- NEWS.md | 8 R/AnnotationBust.R | 36 ++- R/FindLongestSeq.R | 2 build/vignette.rds |binary inst/CITATION |only inst/doc/AnnotationBustR-vignette.R | 2 inst/doc/AnnotationBustR-vignette.Rmd | 29 ++ inst/doc/AnnotationBustR-vignette.html | 345 +++++++++++++++++++++++++++++---- man/AnnotationBust.Rd | 22 +- man/AnnotationBustR.Rd | 1 man/FindLongestSeq.Rd | 2 man/cpDNAterms.Rd | 6 man/mtDNAterms.Rd | 6 man/mtDNAtermsPlants.Rd | 6 man/rDNAterms.Rd | 6 tests/testthat/test_AnnotationBust.R | 11 - tests/testthat/test_FindLongestSeq.R | 18 + vignettes/AnnotationBustR-vignette.Rmd | 29 ++ 20 files changed, 465 insertions(+), 115 deletions(-)
More information about AnnotationBustR at CRAN
Permanent link
Title: Presentation Ninja
Description: Create HTML5 slides with R Markdown and the JavaScript library
'remark.js' (<https://remarkjs.com>).
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Alessandro Gasparini [ctb] (<https://orcid.org/0000-0002-8319-7624>),
Benjie Gillam [ctb],
Claus Thorn Ekstrøm [ctb],
Daniel Anderson [ctb],
Dawei Lang [ctb],
Emi Tanaka [ctb],
Garrick Aden-Buie [ctb] (<https://orcid.org/0000-0002-7111-0077>),
Iñaki Ucar [ctb] (<https://orcid.org/0000-0001-6403-5550>),
John Little [ctb],
Joselyn Chávez [ctb] (<https://orcid.org/0000-0002-4974-4591>),
Joseph Casillas [ctb],
Lucy D'Agostino McGowan [ctb] (<https://orcid.org/0000-0001-7297-9359>),
Malcolm Barrett [ctb] (<https://orcid.org/0000-0003-0299-5825>),
Matthew Mark Strasiotto [ctb] (mstr3336),
Michael Wayne Kearney [ctb],
Nan-Hung Hsieh [ctb],
Ole Petter Bang [ctb] (CSS in
rmarkdown/templates/xaringan/resources/default.css),
Patrick Schratz [ctb],
Paul Klemm [ctb] (<https://orcid.org/0000-0002-5985-1737>),
Paul Lemmens [ctb],
Sean Lopp [ctb],
Yongfu Liao [ctb],
Yue Jiang [ctb] (<https://orcid.org/0000-0002-9798-5517>)
Maintainer: Yihui Xie <xie@yihui.name>
Diff between xaringan versions 0.16 dated 2020-03-31 and 0.17 dated 2020-09-24
DESCRIPTION | 12 MD5 | 38 +- R/render.R | 39 +- README.md | 8 build/vignette.rds |binary inst/examples/ki-demo.Rmd | 2 inst/examples/uol-demo.Rmd | 2 inst/rmarkdown/templates/xaringan/resources/default.css | 2 inst/rmarkdown/templates/xaringan/resources/fc.css | 10 inst/rmarkdown/templates/xaringan/resources/ki-fonts.css | 2 inst/rmarkdown/templates/xaringan/resources/ki.css | 154 +++++----- inst/rmarkdown/templates/xaringan/resources/middlebury.css | 6 inst/rmarkdown/templates/xaringan/resources/robot.css | 2 inst/rmarkdown/templates/xaringan/resources/rutgers.css | 2 inst/rmarkdown/templates/xaringan/resources/uol.css | 2 inst/rmarkdown/templates/xaringan/resources/useR-fonts.css |only inst/rmarkdown/templates/xaringan/resources/useR.css |only inst/rmarkdown/templates/xaringan/skeleton/skeleton.Rmd | 45 +- inst/rmarkdown/templates/xaringan_zh-CN/skeleton/skeleton.Rmd | 16 - man/inf_mr.Rd | 2 man/moon_reader.Rd | 19 - 21 files changed, 192 insertions(+), 171 deletions(-)
Title: An R Package for Text Analysis
Description: A set of tools to analyze texts. Includes, amongst others, functions for automatic language detection, hyphenation, several indices of lexical diversity (e.g., type
token ratio, HD-D/vocd-D, MTLD) and readability (e.g., Flesch, SMOG, LIX, Dale-Chall). Basic import functions for language corpora are also provided, to enable
frequency analyses (supports Celex and Leipzig Corpora Collection file formats) and measures like tf-idf. Note: For full functionality a local installation of
TreeTagger is recommended. It is also recommended to not load this package directly, but by loading one of the available language support packages from the
'l10n' repository <https://undocumeantit.github.io/repos/l10n/>. 'koRpus' also includes a plugin for the R GUI and IDE RKWard, providing graphical dialogs for
its basic features. The respective R package 'rkward' cannot be installed directly from a repository, as it is a part of RKWard. To make full use of this
feature, please install RKWard from <https://rkward.kde.org> (plugins are detected automatically). Due to some restrictions on CRAN, the full package sources
are only available from the project homepage. To ask for help, report bugs, request features, or discuss the development of the package, please subscribe to
the koRpus-dev mailing list (<https://korpusml.reaktanz.de>).
Author: Meik Michalke [aut, cre],
Earl Brown [ctb],
Alberto Mirisola [ctb],
Alexandre Brulet [ctb],
Laura Hauser [ctb]
Maintainer: Meik Michalke <meik.michalke@hhu.de>
Diff between koRpus versions 0.13-1 dated 2020-09-21 and 0.13-2 dated 2020-09-24
ChangeLog | 7 +++++++ DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- R/02_method_readTagged.R | 2 +- R/koRpus-package.R | 4 ++-- build/partial.rdb |binary inst/CITATION | 4 ++-- inst/doc/koRpus_vignette.html | 4 ++-- man/koRpus-package.Rd | 4 ++-- man/readTagged-methods.Rd | 2 +- tests/testthat/test_tokenizing_POS_tagging.R | 21 ++++++++++++++++----- 11 files changed, 47 insertions(+), 29 deletions(-)
Title: A Universal Foreach Parallel Adapter using the Future API of the
'future' Package
Description: Provides a '%dopar%' adapter such that any type of futures can
be used as backends for the 'foreach' framework.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between doFuture versions 0.9.0 dated 2020-01-11 and 0.10.0 dated 2020-09-24
doFuture-0.10.0/doFuture/DESCRIPTION | 14 - doFuture-0.10.0/doFuture/MD5 | 73 +++++----- doFuture-0.10.0/doFuture/NEWS | 23 ++- doFuture-0.10.0/doFuture/R/doFuture-package.R | 4 doFuture-0.10.0/doFuture/R/doFuture.R | 3 doFuture-0.10.0/doFuture/R/makeChunks.R |only doFuture-0.10.0/doFuture/R/registerDoFuture.R | 15 ++ doFuture-0.10.0/doFuture/R/utils.R | 23 +-- doFuture-0.10.0/doFuture/build/vignette.rds |binary doFuture-0.10.0/doFuture/inst/CITATION |only doFuture-0.10.0/doFuture/inst/doc/doFuture.html | 12 - doFuture-0.10.0/doFuture/inst/doc/doFuture.md.rsp | 12 - doFuture-0.10.0/doFuture/inst/tests2/NMF/manual.R | 2 doFuture-0.10.0/doFuture/inst/tests2/caret/examples.R | 2 doFuture-0.10.0/doFuture/inst/tests2/glmnet/examples.R | 2 doFuture-0.10.0/doFuture/inst/tests2/incl/utils.R | 30 ++-- doFuture-0.10.0/doFuture/man/doFuture.Rd | 17 +- doFuture-0.10.0/doFuture/man/makeChunks.Rd | 2 doFuture-0.10.0/doFuture/tests/DEPRECATED.R | 4 doFuture-0.10.0/doFuture/tests/doRNG,dorng.R | 5 doFuture-0.10.0/doFuture/tests/foreach,errors.R | 2 doFuture-0.10.0/doFuture/tests/foreach,globals.R | 2 doFuture-0.10.0/doFuture/tests/foreach.R | 45 ------ doFuture-0.10.0/doFuture/tests/incl/end.R | 3 doFuture-0.10.0/doFuture/tests/incl/start,load-only.R | 2 doFuture-0.10.0/doFuture/tests/makeChunks.R |only doFuture-0.10.0/doFuture/tests/registerDoFuture.R | 2 doFuture-0.10.0/doFuture/tests/times.R | 2 doFuture-0.10.0/doFuture/tests/utils.R |only doFuture-0.10.0/doFuture/tests/zzz,BiocParallel.R |only doFuture-0.10.0/doFuture/tests/zzz_opt-in,NMF,examples.R |only doFuture-0.10.0/doFuture/tests/zzz_opt-in,TSP,examples.R |only doFuture-0.10.0/doFuture/tests/zzz_opt-in,caret,examples.R |only doFuture-0.10.0/doFuture/tests/zzz_opt-in,foreach,examples.R |only doFuture-0.10.0/doFuture/tests/zzz_opt-in,future.BatchJobs.R |only doFuture-0.10.0/doFuture/tests/zzz_opt-in,future.batchtools.R |only doFuture-0.10.0/doFuture/tests/zzz_opt-in,glmnet,examples.R |only doFuture-0.10.0/doFuture/tests/zzz_opt-in,plyr,examples.R |only doFuture-0.10.0/doFuture/tests/zzz_opt-in,plyr.R | 55 +++++-- doFuture-0.10.0/doFuture/vignettes/doFuture.md.rsp | 12 - doFuture-0.9.0/doFuture/R/chunks.R |only doFuture-0.9.0/doFuture/tests/future.BatchJobs.R |only doFuture-0.9.0/doFuture/tests/future.batchtools.R |only doFuture-0.9.0/doFuture/tests/zzz_opt-in,NMF.R |only doFuture-0.9.0/doFuture/tests/zzz_opt-in,TSP.R |only doFuture-0.9.0/doFuture/tests/zzz_opt-in,caret.R |only doFuture-0.9.0/doFuture/tests/zzz_opt-in,foreach.R |only doFuture-0.9.0/doFuture/tests/zzz_opt-in,glmnet.R |only 48 files changed, 191 insertions(+), 177 deletions(-)
Title: Apply Functions to All Combinations of List Elements
Description: Provides an extension to the 'purrr' family of
mapping functions to apply a function to each combination of elements
in a list of inputs. Also includes functions for automatically
detecting output type in mapping functions, finding every combination
of elements of lists or rows of data frames, and applying multiple
models to multiple subsets of a dataset.
Author: Alexander Rossell Hayes [aut, cre, cph]
(<https://orcid.org/0000-0001-9412-0457>)
Maintainer: Alexander Rossell Hayes <alexander@rossellhayes.com>
Diff between crossmap versions 0.1.0 dated 2020-09-10 and 0.2.0 dated 2020-09-24
DESCRIPTION | 11 ++--- MD5 | 17 ++++---- NEWS.md |only R/cross_fit.R | 55 ++++++++++++++++++++++---- R/isFALSE.R | 12 ++--- README.md | 84 ++++++++++++++++++++-------------------- man/cross_fit.Rd | 11 ++++- man/cross_join.Rd | 4 - man/crossmap-package.Rd | 1 tests/testthat/test-cross_fit.R | 71 ++++++++++++++++++++++++++++----- 10 files changed, 185 insertions(+), 81 deletions(-)
Title: Reading and Saving DICOM Image Files
Description: This function provides an interface between 'Matlab' and 'R' in facilitating fast processing for reading and saving DICOM images.
Author: Shu Jiang [aut, cre] (<https://orcid.org/0000-0003-1464-4838>)
Maintainer: Shu Jiang <jiang.shu@wustl.edu>
Diff between DICOMread versions 0.0.0.1 dated 2020-09-01 and 0.0.0.2 dated 2020-09-24
DICOMread-0.0.0.1/DICOMread/R/save_mat.R |only DICOMread-0.0.0.1/DICOMread/man/form_mat_fun.Rd |only DICOMread-0.0.0.2/DICOMread/DESCRIPTION | 6 +++--- DICOMread-0.0.0.2/DICOMread/MD5 | 6 ++---- DICOMread-0.0.0.2/DICOMread/NAMESPACE | 1 - 5 files changed, 5 insertions(+), 8 deletions(-)