Title: Interactive Grammar of Graphics
Description: An implementation of an interactive grammar of graphics, taking the
best parts of 'ggplot2', combining them with the reactive framework of
'shiny' and drawing web graphics using 'vega'.
Author: Winston Chang [aut, cre],
Hadley Wickham [aut],
RStudio [cph],
jQuery Foundation [cph] (jQuery library and jQuery UI library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/www/lib/jquery/AUTHORS.txt),
jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in
inst/www/lib/jquery-ui/AUTHORS.txt),
Mike Bostock [ctb, cph] (D3 library),
D3 contributors [ctb] (D3 library; authors listed at
https://github.com/d3/d3/graphs/contributors),
Trifacta Inc. [cph] (Vega library),
Vega contributors [ctb] (Vega library; authors listed at
https://github.com/trifacta/vega/graphs/contributors),
Sebastián Décima [ctb, cph] (javascript-detect-element-resize library)
Maintainer: Winston Chang <winston@rstudio.com>
Diff between ggvis versions 0.4.5 dated 2019-10-26 and 0.4.6 dated 2020-10-01
DESCRIPTION | 14 +++--- LICENSE | 2 MD5 | 86 ++++++++++++++++++++-------------------- NEWS.md | 4 + R/full_seq.R | 1 R/guide_axis.R | 2 R/guide_legend.R | 2 R/handle_keyboard.R | 2 R/print.R | 3 + R/scales.R | 2 R/vega.R | 2 README.md | 21 +++++---- man/add_axis.Rd | 27 +++++++++--- man/add_data.Rd | 3 - man/add_legend.Rd | 13 ++++-- man/add_props.Rd | 3 - man/axis_props.Rd | 11 ++++- man/cocaine.Rd | 4 + man/compute_bin.Rd | 14 +++++- man/compute_density.Rd | 12 ++++- man/compute_model_prediction.Rd | 13 +++++- man/create_input.Rd | 8 ++- man/fullseq.Rd | 3 - man/ggvisOutputElements.Rd | 3 - man/ggvis_scale.Rd | 16 ++++++- man/handle_click.Rd | 4 - man/handle_resize.Rd | 2 man/input_checkbox.Rd | 14 ++++-- man/input_select.Rd | 58 +++++++++++++++++--------- man/input_slider.Rd | 29 ++++++++++--- man/input_text.Rd | 9 ++-- man/layer_densities.Rd | 10 +++- man/layer_histograms.Rd | 24 ++++++++--- man/layer_model_predictions.Rd | 11 ++++- man/legend_props.Rd | 9 +++- man/print.ggvis.Rd | 6 +- man/prop.Rd | 12 ++++- man/scale_datetime.Rd | 24 ++++++++--- man/scale_numeric.Rd | 26 +++++++++--- man/scale_ordinal.Rd | 62 ++++++++++++++++++++++------ man/set_options.Rd | 14 +++++- man/shiny-ggvis.Rd | 12 +++-- man/singular.Rd | 11 ++++- man/waggle.Rd | 3 - 44 files changed, 422 insertions(+), 189 deletions(-)
Title: Optimal Test Design Approach to Fixed and Adaptive Test
Construction
Description: Use the optimal test design approach by Birnbaum (1968, ISBN:9781593119348) and
van der Linden (2018) <doi:10.1201/9781315117430> in constructing fixed and adaptive tests. Supports the following
mixed-integer programming (MIP) solver packages: 'lpsymphony', 'Rsymphony', 'gurobi', 'lpSolve', and 'Rglpk'. The 'gurobi' package
is not available from CRAN; see <https://www.gurobi.com/downloads/>. See vignette for installing 'Rsymphony' package
on Mac systems.
Author: Seung W. Choi [aut, cre] (<https://orcid.org/0000-0003-4777-5420>),
Sangdon Lim [aut] (<https://orcid.org/0000-0002-2988-014X>)
Maintainer: Seung W. Choi <schoi@austin.utexas.edu>
Diff between TestDesign versions 1.1.2 dated 2020-09-21 and 1.1.3 dated 2020-10-01
TestDesign-1.1.2/TestDesign/R/pool_cluster_operators.R |only TestDesign-1.1.2/TestDesign/man/pool_cluster-class.Rd |only TestDesign-1.1.2/TestDesign/man/pool_cluster-operators.Rd |only TestDesign-1.1.3/TestDesign/DESCRIPTION | 28 +- TestDesign-1.1.3/TestDesign/MD5 | 106 +++---- TestDesign-1.1.3/TestDesign/NAMESPACE | 2 TestDesign-1.1.3/TestDesign/NEWS.md | 55 ++-- TestDesign-1.1.3/TestDesign/R/constraints_operators.R | 2 TestDesign-1.1.3/TestDesign/R/datasets.R | 67 ++--- TestDesign-1.1.3/TestDesign/R/exposure_control_functions.R | 40 +- TestDesign-1.1.3/TestDesign/R/extensions.R | 8 TestDesign-1.1.3/TestDesign/R/helper_functions.R | 8 TestDesign-1.1.3/TestDesign/R/import.R | 4 TestDesign-1.1.3/TestDesign/R/item_attrib_operators.R | 2 TestDesign-1.1.3/TestDesign/R/item_class.R | 14 - TestDesign-1.1.3/TestDesign/R/item_functions.R | 100 +++++-- TestDesign-1.1.3/TestDesign/R/item_pool_cluster_operators.R |only TestDesign-1.1.3/TestDesign/R/item_pool_operators.R | 2 TestDesign-1.1.3/TestDesign/R/loading_functions.R | 4 TestDesign-1.1.3/TestDesign/R/print_functions.R | 134 +++++----- TestDesign-1.1.3/TestDesign/R/shadow_class.R | 56 ++-- TestDesign-1.1.3/TestDesign/R/shadow_functions.R | 121 ++++++--- TestDesign-1.1.3/TestDesign/R/show_functions.R | 12 TestDesign-1.1.3/TestDesign/R/solver_functions.R | 29 +- TestDesign-1.1.3/TestDesign/R/st_attrib_operators.R | 2 TestDesign-1.1.3/TestDesign/R/static_class.R | 3 TestDesign-1.1.3/TestDesign/R/static_functions.R | 2 TestDesign-1.1.3/TestDesign/R/test_operators.R | 11 TestDesign-1.1.3/TestDesign/R/theta_functions.R | 6 TestDesign-1.1.3/TestDesign/man/calcEscore-methods.Rd | 9 TestDesign-1.1.3/TestDesign/man/calcFisher-methods.Rd | 15 - TestDesign-1.1.3/TestDesign/man/calcHessian-methods.Rd | 21 + TestDesign-1.1.3/TestDesign/man/calcJacobian-methods.Rd | 22 + TestDesign-1.1.3/TestDesign/man/calcLocation-methods.Rd | 2 TestDesign-1.1.3/TestDesign/man/calcProb-methods.Rd | 6 TestDesign-1.1.3/TestDesign/man/createShadowTestConfig.Rd | 10 TestDesign-1.1.3/TestDesign/man/dataset_bayes.Rd | 21 - TestDesign-1.1.3/TestDesign/man/dataset_fatigue.Rd | 16 - TestDesign-1.1.3/TestDesign/man/dataset_reading.Rd | 18 - TestDesign-1.1.3/TestDesign/man/dataset_science.Rd | 12 TestDesign-1.1.3/TestDesign/man/getSolution-methods.Rd | 8 TestDesign-1.1.3/TestDesign/man/item_pool-class.Rd | 2 TestDesign-1.1.3/TestDesign/man/item_pool_cluster-class.Rd |only TestDesign-1.1.3/TestDesign/man/item_pool_cluster-operators.Rd |only TestDesign-1.1.3/TestDesign/man/loadConstraints.Rd | 2 TestDesign-1.1.3/TestDesign/man/loadItemPool.Rd | 2 TestDesign-1.1.3/TestDesign/man/makeTest-methods.Rd | 11 TestDesign-1.1.3/TestDesign/man/makeTestCluster-methods.Rd | 10 TestDesign-1.1.3/TestDesign/man/mlef-methods.Rd | 2 TestDesign-1.1.3/TestDesign/man/output_Shadow_all-class.Rd | 31 +- TestDesign-1.1.3/TestDesign/man/plotExposure-methods.Rd | 6 TestDesign-1.1.3/TestDesign/man/print-methods.Rd | 7 TestDesign-1.1.3/TestDesign/man/runAssembly.Rd | 10 TestDesign-1.1.3/TestDesign/man/show-methods.Rd | 6 TestDesign-1.1.3/TestDesign/man/simResp-methods.Rd | 23 + TestDesign-1.1.3/TestDesign/man/summary-methods.Rd | 8 TestDesign-1.1.3/TestDesign/tests/testthat/test-theta-methods.R | 2 57 files changed, 656 insertions(+), 444 deletions(-)
Title: Phonetic Spelling Algorithms
Description: Provides a collection of phonetic algorithms including
Soundex, Metaphone, NYSIIS, Caverphone, and others. The package is
documented in <doi:10.18637/jss.v095.i08>.
Author: James Howard [aut, cre] (<https://orcid.org/0000-0003-4530-1547>),
Kyle Haynes [ctb],
Amanda Hood [ctb],
Os Keyes [ctb]
Maintainer: James Howard <jh@jameshoward.us>
Diff between phonics versions 1.3.6 dated 2020-07-06 and 1.3.8 dated 2020-10-01
DESCRIPTION | 15 ++++++------ MD5 | 62 +++++++++++++++++++++++++------------------------- R/caverphone.R | 4 +++ R/cologne.R | 4 +++ R/lein.R | 4 +++ R/metaphone.R | 6 ++++ R/mra.R | 5 +++- R/nysiis.R | 4 +++ R/onca.R | 4 +++ R/phonex.R | 4 +++ R/phonics.R | 6 ++++ R/rogerroot.R | 4 +++ R/soundex.R | 5 ++++ R/statcan.R | 4 +++ README.md | 14 ++++++++--- build/vignette.rds |binary inst/CITATION | 41 ++++++++++++++++++++++++--------- inst/doc/phonics.Rmd | 2 - inst/doc/phonics.html | 22 +++++++++++++++-- man/caverphone.Rd | 4 +++ man/cologne.Rd | 4 +++ man/lein.Rd | 4 +++ man/metaphone.Rd | 5 ++++ man/mra.Rd | 4 +++ man/nysiis.Rd | 4 +++ man/onca.Rd | 4 +++ man/phonex.Rd | 4 +++ man/phonics.Rd | 5 ++++ man/rogerroot.Rd | 4 +++ man/soundex.Rd | 4 +++ man/statcan.Rd | 4 +++ vignettes/phonics.Rmd | 2 - 32 files changed, 203 insertions(+), 59 deletions(-)
Title: Hierarchical Multiple Imputation
Description: Runs single level and multilevel imputation models as described in Speidel, Drechsler and Jolani (2020) <doi:10.18637/jss.v095.i09>. The user just has to pass the data to the main function and, optionally, his analysis model. Basically the package then translates this analysis model into commands to impute the data according to it with functions from 'mice', 'MCMCglmm' or routines build for this package.
Author: Matthias Speidel [aut, cre] (Munich, Germany),
Joerg Drechsler [aut] (Institute for Employment Research, Nuremberg,
Germany),
Shahab Jolani [aut] (Maastricht University, Maastricht, The
Netherlands)
Maintainer: Matthias Speidel <matthias.speidel@googlemail.com>
Diff between hmi versions 0.9.20 dated 2020-09-17 and 1.0.0 dated 2020-10-01
DESCRIPTION | 8 ++++---- MD5 | 9 +++++---- R/hmi_wrapper.R | 3 +++ inst/CITATION |only inst/doc/myvignette.html | 4 ++-- man/hmi.Rd | 5 +++++ 6 files changed, 19 insertions(+), 10 deletions(-)
Title: Convert Statistical Objects into Tidy Tibbles
Description: Summarizes key information about statistical
objects in tidy tibbles. This makes it easy to report results, create
plots and consistently work with large numbers of models at once.
Broom provides three verbs that each provide different types of
information about a model. tidy() summarizes information about model
components such as coefficients of a regression. glance() reports
information about an entire model, such as goodness of fit measures
like AIC and BIC. augment() adds information about individual
observations to a dataset, such as fitted values or influence
measures.
Author: David Robinson [aut],
Alex Hayes [aut, cre] (<https://orcid.org/0000-0002-4985-5160>),
Simon Couch [aut],
Indrajeet Patil [ctb] (<https://orcid.org/0000-0003-1995-6531>),
Derek Chiu [ctb],
Matthieu Gomez [ctb],
Boris Demeshev [ctb],
Dieter Menne [ctb],
Benjamin Nutter [ctb],
Luke Johnston [ctb],
Ben Bolker [ctb],
Francois Briatte [ctb],
Jeffrey Arnold [ctb],
Jonah Gabry [ctb],
Luciano Selzer [ctb],
Gavin Simpson [ctb],
Jens Preussner [ctb],
Jay Hesselberth [ctb],
Hadley Wickham [ctb],
Matthew Lincoln [ctb],
Alessandro Gasparini [ctb],
Lukasz Komsta [ctb],
Frederick Novometsky [ctb],
Wilson Freitas [ctb],
Michelle Evans [ctb],
Jason Cory Brunson [ctb],
Simon Jackson [ctb],
Ben Whalley [ctb],
Karissa Whiting [ctb],
Yves Rosseel [ctb],
Michael Kuehn [ctb],
Jorge Cimentada [ctb],
Erle Holgersen [ctb],
Karl Dunkle Werner [ctb] (<https://orcid.org/0000-0003-0523-7309>),
Ethan Christensen [ctb],
Steven Pav [ctb],
Paul PJ [ctb],
Ben Schneider [ctb],
Patrick Kennedy [ctb],
Lily Medina [ctb],
Brian Fannin [ctb],
Jason Muhlenkamp [ctb],
Matt Lehman [ctb],
Bill Denney [ctb] (<https://orcid.org/0000-0002-5759-428X>),
Nic Crane [ctb],
Andrew Bates [ctb],
Vincent Arel-Bundock [ctb] (<https://orcid.org/0000-0003-2042-7063>),
Hideaki Hayashi [ctb],
Luis Tobalina [ctb],
Annie Wang [ctb],
Wei Yang Tham [ctb],
Clara Wang [ctb],
Abby Smith [ctb] (<https://orcid.org/0000-0002-3207-0375>),
Jasper Cooper [ctb] (<https://orcid.org/0000-0002-8639-3188>),
E Auden Krauska [ctb] (<https://orcid.org/0000-0002-1466-5850>),
Alex Wang [ctb],
Malcolm Barrett [ctb] (<https://orcid.org/0000-0003-0299-5825>),
Charles Gray [ctb] (<https://orcid.org/0000-0002-9978-011X>),
Jared Wilber [ctb],
Vilmantas Gegzna [ctb] (<https://orcid.org/0000-0002-9500-5167>),
Eduard Szoecs [ctb],
Frederik Aust [ctb] (<https://orcid.org/0000-0003-4900-788X>),
Angus Moore [ctb],
Nick Williams [ctb],
Marius Barth [ctb] (<https://orcid.org/0000-0002-3421-6665>),
Bruna Wundervald [ctb] (<https://orcid.org/0000-0001-8163-220X>),
Joyce Cahoon [ctb] (<https://orcid.org/0000-0001-7217-4702>),
Grant McDermott [ctb] (<https://orcid.org/0000-0001-7883-8573>),
Kevin Zarca [ctb],
Shiro Kuriwaki [ctb] (<https://orcid.org/0000-0002-5687-2647>),
Lukas Wallrich [ctb] (<https://orcid.org/0000-0003-2121-5177>),
James Martherus [ctb] (<https://orcid.org/0000-0002-8285-3300>),
Chuliang Xiao [ctb] (<https://orcid.org/0000-0002-8466-9398>),
Joseph Larmarange [ctb],
Max Kuhn [ctb],
Michal Bojanowski [ctb],
Hakon Malmedal [ctb],
Clara Wang [ctb],
Sergio Oller [ctb],
Luke Sonnet [ctb],
Jim Hester [ctb],
Cory Brunson [ctb],
Ben Schneider [ctb],
Bernie Gray [ctb] (<https://orcid.org/0000-0001-9190-6032>),
Mara Averick [ctb],
Aaron Jacobs [ctb],
Andreas Bender [ctb],
Sven Templer [ctb],
Paul-Christian Buerkner [ctb],
Matthew Kay [ctb],
Erwan Le Pennec [ctb],
Johan Junkka [ctb],
Hao Zhu [ctb],
Benjamin Soltoff [ctb],
Zoe Wilkinson Saldana [ctb],
Tyler Littlefield [ctb],
Charles T. Gray [ctb],
Shabbh E. Banks [ctb],
Serina Robinson [ctb],
Roger Bivand [ctb],
Riinu Ots [ctb],
Nicholas Williams [ctb],
Nina Jakobsen [ctb],
Michael Weylandt [ctb],
Lisa Lendway [ctb],
Karl Hailperin [ctb],
Josue Rodriguez [ctb],
Jenny Bryan [ctb],
Chris Jarvis [ctb],
Greg Macfarlane [ctb],
Brian Mannakee [ctb],
Drew Tyre [ctb],
Shreyas Singh [ctb],
Laurens Geffert [ctb],
Hong Ooi [ctb],
Henrik Bengtsson [ctb],
Eduard Szocs [ctb],
David Hugh-Jones [ctb],
Matthieu Stigler [ctb],
Hugo Tavares [ctb] (<https://orcid.org/0000-0001-9373-2726>),
R. Willem Vervoort [ctb],
Brenton M. Wiernik [ctb]
Maintainer: Alex Hayes <alexpghayes@gmail.com>
Diff between broom versions 0.7.0 dated 2020-07-09 and 0.7.1 dated 2020-10-01
broom-0.7.0/broom/R/gamlss-tidiers.R |only broom-0.7.0/broom/man/glance.Gam.Rd |only broom-0.7.0/broom/man/tidy.Gam.Rd |only broom-0.7.1/broom/DESCRIPTION | 86 ++- broom-0.7.1/broom/MD5 | 521 ++++++++++----------- broom-0.7.1/broom/NAMESPACE | 7 broom-0.7.1/broom/NEWS.md | 64 ++ broom-0.7.1/broom/R/aaa-documentation-helper.R | 20 broom-0.7.1/broom/R/aer-tidiers.R | 12 broom-0.7.1/broom/R/biglm-tidiers.R | 2 broom-0.7.1/broom/R/bingroup-tidiers.R | 2 broom-0.7.1/broom/R/broom-package.R | 14 broom-0.7.1/broom/R/deprecated-0-7-0.R | 11 broom-0.7.1/broom/R/deprecated-0-7-1.R |only broom-0.7.1/broom/R/drc-tidiers.R | 10 broom-0.7.1/broom/R/ergm-tidiers.R | 6 broom-0.7.1/broom/R/fixest-tidiers.R | 28 - broom-0.7.1/broom/R/geepack-tidiers.R | 37 - broom-0.7.1/broom/R/lavaan-tidiers.R | 12 broom-0.7.1/broom/R/lfe-tidiers.R | 132 +++-- broom-0.7.1/broom/R/list-tidiers.R | 2 broom-0.7.1/broom/R/lmodel2-tidiers.R | 2 broom-0.7.1/broom/R/lmtest-tidiers.R | 83 +++ broom-0.7.1/broom/R/margins-tidiers.R |only broom-0.7.1/broom/R/mass-polr-tidiers.R | 4 broom-0.7.1/broom/R/mediate-tidiers.R | 2 broom-0.7.1/broom/R/mlogit-tidiers.R |only broom-0.7.1/broom/R/quantreg-rq-tidiers.R | 4 broom-0.7.1/broom/R/rma-tidiers.R | 26 - broom-0.7.1/broom/R/sp-tidiers.R | 2 broom-0.7.1/broom/R/stats-anova-tidiers.R | 5 broom-0.7.1/broom/R/stats-glm-tidiers.R | 39 + broom-0.7.1/broom/R/stats-lm-tidiers.R | 35 + broom-0.7.1/broom/R/stats-prcomp-tidiers.R | 49 - broom-0.7.1/broom/R/survival-survfit-tidiers.R | 5 broom-0.7.1/broom/R/utilities.R | 57 +- broom-0.7.1/broom/R/zoo-tidiers.R | 23 broom-0.7.1/broom/README.md | 57 +- broom-0.7.1/broom/inst/WORDLIST | 11 broom-0.7.1/broom/inst/doc/adding-tidiers.html | 4 broom-0.7.1/broom/inst/doc/available-methods.html | 28 - broom-0.7.1/broom/inst/doc/bootstrapping.html | 4 broom-0.7.1/broom/inst/doc/broom.Rmd | 4 broom-0.7.1/broom/inst/doc/broom.html | 8 broom-0.7.1/broom/inst/doc/broom_and_dplyr.html | 4 broom-0.7.1/broom/man/augment.Mclust.Rd | 8 broom-0.7.1/broom/man/augment.betamfx.Rd | 8 broom-0.7.1/broom/man/augment.betareg.Rd | 8 broom-0.7.1/broom/man/augment.clm.Rd | 8 broom-0.7.1/broom/man/augment.coxph.Rd | 8 broom-0.7.1/broom/man/augment.decomposed.ts.Rd | 8 broom-0.7.1/broom/man/augment.drc.Rd | 14 broom-0.7.1/broom/man/augment.factanal.Rd | 8 broom-0.7.1/broom/man/augment.felm.Rd | 62 +- broom-0.7.1/broom/man/augment.fixest.Rd | 22 broom-0.7.1/broom/man/augment.glm.Rd | 10 broom-0.7.1/broom/man/augment.glmRob.Rd | 6 broom-0.7.1/broom/man/augment.htest.Rd | 8 broom-0.7.1/broom/man/augment.ivreg.Rd | 13 broom-0.7.1/broom/man/augment.kmeans.Rd | 8 broom-0.7.1/broom/man/augment.lm.Rd | 52 +- broom-0.7.1/broom/man/augment.lmRob.Rd | 8 broom-0.7.1/broom/man/augment.loess.Rd | 4 broom-0.7.1/broom/man/augment.mfx.Rd | 10 broom-0.7.1/broom/man/augment.mjoint.Rd | 8 broom-0.7.1/broom/man/augment.mlogit.Rd |only broom-0.7.1/broom/man/augment.nlrq.Rd | 2 broom-0.7.1/broom/man/augment.nls.Rd | 8 broom-0.7.1/broom/man/augment.pam.Rd | 8 broom-0.7.1/broom/man/augment.plm.Rd | 8 broom-0.7.1/broom/man/augment.poLCA.Rd | 8 broom-0.7.1/broom/man/augment.polr.Rd | 8 broom-0.7.1/broom/man/augment.prcomp.Rd | 8 broom-0.7.1/broom/man/augment.rlm.Rd | 10 broom-0.7.1/broom/man/augment.rma.Rd | 22 broom-0.7.1/broom/man/augment.robustbase.glmrob.Rd | 10 broom-0.7.1/broom/man/augment.robustbase.lmrob.Rd | 10 broom-0.7.1/broom/man/augment.rq.Rd | 8 broom-0.7.1/broom/man/augment.rqs.Rd | 8 broom-0.7.1/broom/man/augment.sarlm.Rd | 8 broom-0.7.1/broom/man/augment.smooth.spline.Rd | 2 broom-0.7.1/broom/man/augment.speedlm.Rd | 8 broom-0.7.1/broom/man/augment.stl.Rd | 8 broom-0.7.1/broom/man/augment.survreg.Rd | 8 broom-0.7.1/broom/man/augment_columns.Rd | 2 broom-0.7.1/broom/man/bootstrap.Rd | 3 broom-0.7.1/broom/man/broom.Rd | 7 broom-0.7.1/broom/man/confint_tidy.Rd | 1 broom-0.7.1/broom/man/data.frame_tidiers.Rd | 3 broom-0.7.1/broom/man/durbinWatsonTest_tidiers.Rd | 2 broom-0.7.1/broom/man/finish_glance.Rd | 1 broom-0.7.1/broom/man/fix_data_frame.Rd | 1 broom-0.7.1/broom/man/glance.Arima.Rd | 2 broom-0.7.1/broom/man/glance.Mclust.Rd | 2 broom-0.7.1/broom/man/glance.aareg.Rd | 2 broom-0.7.1/broom/man/glance.aov.Rd | 2 broom-0.7.1/broom/man/glance.betamfx.Rd | 2 broom-0.7.1/broom/man/glance.betareg.Rd | 2 broom-0.7.1/broom/man/glance.biglm.Rd | 3 broom-0.7.1/broom/man/glance.binDesign.Rd | 4 broom-0.7.1/broom/man/glance.cch.Rd | 2 broom-0.7.1/broom/man/glance.clm.Rd | 2 broom-0.7.1/broom/man/glance.clmm.Rd | 2 broom-0.7.1/broom/man/glance.coeftest.Rd |only broom-0.7.1/broom/man/glance.coxph.Rd | 2 broom-0.7.1/broom/man/glance.cv.glmnet.Rd | 2 broom-0.7.1/broom/man/glance.drc.Rd | 2 broom-0.7.1/broom/man/glance.ergm.Rd | 2 broom-0.7.1/broom/man/glance.factanal.Rd | 2 broom-0.7.1/broom/man/glance.felm.Rd | 56 +- broom-0.7.1/broom/man/glance.fitdistr.Rd | 2 broom-0.7.1/broom/man/glance.fixest.Rd | 6 broom-0.7.1/broom/man/glance.gam.Rd |only broom-0.7.1/broom/man/glance.garch.Rd | 2 broom-0.7.1/broom/man/glance.geeglm.Rd | 2 broom-0.7.1/broom/man/glance.glm.Rd | 2 broom-0.7.1/broom/man/glance.glmRob.Rd | 2 broom-0.7.1/broom/man/glance.glmnet.Rd | 2 broom-0.7.1/broom/man/glance.gmm.Rd | 2 broom-0.7.1/broom/man/glance.ivreg.Rd | 7 broom-0.7.1/broom/man/glance.kmeans.Rd | 2 broom-0.7.1/broom/man/glance.lavaan.Rd | 2 broom-0.7.1/broom/man/glance.lm.Rd | 29 - broom-0.7.1/broom/man/glance.lmRob.Rd | 2 broom-0.7.1/broom/man/glance.lmodel2.Rd | 2 broom-0.7.1/broom/man/glance.margins.Rd |only broom-0.7.1/broom/man/glance.mfx.Rd | 2 broom-0.7.1/broom/man/glance.mjoint.Rd | 2 broom-0.7.1/broom/man/glance.mlogit.Rd |only broom-0.7.1/broom/man/glance.muhaz.Rd | 2 broom-0.7.1/broom/man/glance.multinom.Rd | 2 broom-0.7.1/broom/man/glance.nlrq.Rd | 2 broom-0.7.1/broom/man/glance.nls.Rd | 2 broom-0.7.1/broom/man/glance.orcutt.Rd | 2 broom-0.7.1/broom/man/glance.pam.Rd | 2 broom-0.7.1/broom/man/glance.plm.Rd | 2 broom-0.7.1/broom/man/glance.poLCA.Rd | 2 broom-0.7.1/broom/man/glance.polr.Rd | 2 broom-0.7.1/broom/man/glance.pyears.Rd | 2 broom-0.7.1/broom/man/glance.ridgelm.Rd | 2 broom-0.7.1/broom/man/glance.rlm.Rd | 2 broom-0.7.1/broom/man/glance.rma.Rd | 2 broom-0.7.1/broom/man/glance.robustbase.lmrob.Rd | 2 broom-0.7.1/broom/man/glance.rq.Rd | 2 broom-0.7.1/broom/man/glance.sarlm.Rd | 2 broom-0.7.1/broom/man/glance.smooth.spline.Rd | 2 broom-0.7.1/broom/man/glance.speedglm.Rd | 2 broom-0.7.1/broom/man/glance.speedlm.Rd | 2 broom-0.7.1/broom/man/glance.survdiff.Rd | 2 broom-0.7.1/broom/man/glance.survexp.Rd | 2 broom-0.7.1/broom/man/glance.survfit.Rd | 11 broom-0.7.1/broom/man/glance.survreg.Rd | 2 broom-0.7.1/broom/man/glance.svyglm.Rd | 2 broom-0.7.1/broom/man/glance.svyolr.Rd | 2 broom-0.7.1/broom/man/glance_optim.Rd | 2 broom-0.7.1/broom/man/list_tidiers.Rd | 2 broom-0.7.1/broom/man/metafor_tidiers.Rd | 2 broom-0.7.1/broom/man/reexports.Rd | 10 broom-0.7.1/broom/man/sp_tidiers.Rd | 2 broom-0.7.1/broom/man/sparse_tidiers.Rd | 2 broom-0.7.1/broom/man/summary_tidiers.Rd | 4 broom-0.7.1/broom/man/tidy.Arima.Rd | 2 broom-0.7.1/broom/man/tidy.Kendall.Rd | 2 broom-0.7.1/broom/man/tidy.Mclust.Rd | 2 broom-0.7.1/broom/man/tidy.TukeyHSD.Rd | 2 broom-0.7.1/broom/man/tidy.aareg.Rd | 2 broom-0.7.1/broom/man/tidy.acf.Rd | 2 broom-0.7.1/broom/man/tidy.anova.Rd | 2 broom-0.7.1/broom/man/tidy.aov.Rd | 2 broom-0.7.1/broom/man/tidy.aovlist.Rd | 2 broom-0.7.1/broom/man/tidy.betamfx.Rd | 2 broom-0.7.1/broom/man/tidy.betareg.Rd | 2 broom-0.7.1/broom/man/tidy.biglm.Rd | 2 broom-0.7.1/broom/man/tidy.binDesign.Rd | 2 broom-0.7.1/broom/man/tidy.binWidth.Rd | 2 broom-0.7.1/broom/man/tidy.boot.Rd | 2 broom-0.7.1/broom/man/tidy.btergm.Rd | 2 broom-0.7.1/broom/man/tidy.cch.Rd | 2 broom-0.7.1/broom/man/tidy.cld.Rd | 2 broom-0.7.1/broom/man/tidy.clm.Rd | 2 broom-0.7.1/broom/man/tidy.clmm.Rd | 2 broom-0.7.1/broom/man/tidy.coeftest.Rd | 26 - broom-0.7.1/broom/man/tidy.confint.glht.Rd | 2 broom-0.7.1/broom/man/tidy.confusionMatrix.Rd | 2 broom-0.7.1/broom/man/tidy.coxph.Rd | 2 broom-0.7.1/broom/man/tidy.cv.glmnet.Rd | 2 broom-0.7.1/broom/man/tidy.density.Rd | 3 broom-0.7.1/broom/man/tidy.dist.Rd | 3 broom-0.7.1/broom/man/tidy.drc.Rd | 2 broom-0.7.1/broom/man/tidy.epi.2by2.Rd | 2 broom-0.7.1/broom/man/tidy.ergm.Rd | 5 broom-0.7.1/broom/man/tidy.factanal.Rd | 2 broom-0.7.1/broom/man/tidy.felm.Rd | 71 +- broom-0.7.1/broom/man/tidy.fitdistr.Rd | 2 broom-0.7.1/broom/man/tidy.fixest.Rd | 1 broom-0.7.1/broom/man/tidy.ftable.Rd | 3 broom-0.7.1/broom/man/tidy.gam.Rd |only broom-0.7.1/broom/man/tidy.gamlss.Rd | 18 broom-0.7.1/broom/man/tidy.garch.Rd | 2 broom-0.7.1/broom/man/tidy.geeglm.Rd | 10 broom-0.7.1/broom/man/tidy.glht.Rd | 2 broom-0.7.1/broom/man/tidy.glm.Rd | 2 broom-0.7.1/broom/man/tidy.glmRob.Rd | 2 broom-0.7.1/broom/man/tidy.glmnet.Rd | 2 broom-0.7.1/broom/man/tidy.gmm.Rd | 2 broom-0.7.1/broom/man/tidy.htest.Rd | 2 broom-0.7.1/broom/man/tidy.ivreg.Rd | 7 broom-0.7.1/broom/man/tidy.kappa.Rd | 2 broom-0.7.1/broom/man/tidy.kde.Rd | 2 broom-0.7.1/broom/man/tidy.kmeans.Rd | 2 broom-0.7.1/broom/man/tidy.lm.Rd | 29 - broom-0.7.1/broom/man/tidy.lm.beta.Rd | 2 broom-0.7.1/broom/man/tidy.lmRob.Rd | 2 broom-0.7.1/broom/man/tidy.lmodel2.Rd | 4 broom-0.7.1/broom/man/tidy.map.Rd | 2 broom-0.7.1/broom/man/tidy.margins.Rd |only broom-0.7.1/broom/man/tidy.mediate.Rd | 4 broom-0.7.1/broom/man/tidy.mfx.Rd | 2 broom-0.7.1/broom/man/tidy.mjoint.Rd | 2 broom-0.7.1/broom/man/tidy.mle2.Rd | 2 broom-0.7.1/broom/man/tidy.mlm.Rd | 2 broom-0.7.1/broom/man/tidy.mlogit.Rd |only broom-0.7.1/broom/man/tidy.muhaz.Rd | 2 broom-0.7.1/broom/man/tidy.multinom.Rd | 2 broom-0.7.1/broom/man/tidy.nlrq.Rd | 2 broom-0.7.1/broom/man/tidy.nls.Rd | 2 broom-0.7.1/broom/man/tidy.orcutt.Rd | 2 broom-0.7.1/broom/man/tidy.pairwise.htest.Rd | 2 broom-0.7.1/broom/man/tidy.pam.Rd | 2 broom-0.7.1/broom/man/tidy.plm.Rd | 2 broom-0.7.1/broom/man/tidy.poLCA.Rd | 2 broom-0.7.1/broom/man/tidy.polr.Rd | 4 broom-0.7.1/broom/man/tidy.power.htest.Rd | 2 broom-0.7.1/broom/man/tidy.prcomp.Rd | 8 broom-0.7.1/broom/man/tidy.pyears.Rd | 2 broom-0.7.1/broom/man/tidy.rcorr.Rd | 2 broom-0.7.1/broom/man/tidy.regsubsets.Rd | 2 broom-0.7.1/broom/man/tidy.ridgelm.Rd | 2 broom-0.7.1/broom/man/tidy.rlm.Rd | 2 broom-0.7.1/broom/man/tidy.robustbase.glmrob.Rd | 2 broom-0.7.1/broom/man/tidy.robustbase.lmrob.Rd | 2 broom-0.7.1/broom/man/tidy.roc.Rd | 2 broom-0.7.1/broom/man/tidy.sarlm.Rd | 2 broom-0.7.1/broom/man/tidy.spec.Rd | 2 broom-0.7.1/broom/man/tidy.speedglm.Rd | 2 broom-0.7.1/broom/man/tidy.speedlm.Rd | 2 broom-0.7.1/broom/man/tidy.summary.glht.Rd | 2 broom-0.7.1/broom/man/tidy.survdiff.Rd | 2 broom-0.7.1/broom/man/tidy.survexp.Rd | 2 broom-0.7.1/broom/man/tidy.survfit.Rd | 2 broom-0.7.1/broom/man/tidy.survreg.Rd | 2 broom-0.7.1/broom/man/tidy.svyglm.Rd | 2 broom-0.7.1/broom/man/tidy.svyolr.Rd | 4 broom-0.7.1/broom/man/tidy.systemfit.Rd | 2 broom-0.7.1/broom/man/tidy.table.Rd | 2 broom-0.7.1/broom/man/tidy.ts.Rd | 2 broom-0.7.1/broom/man/tidy.zoo.Rd | 2 broom-0.7.1/broom/man/tidy_irlba.Rd | 8 broom-0.7.1/broom/man/tidy_optim.Rd | 2 broom-0.7.1/broom/man/tidy_svd.Rd | 8 broom-0.7.1/broom/man/tidy_xyz.Rd | 2 broom-0.7.1/broom/man/vector_tidiers.Rd | 9 broom-0.7.1/broom/tests/testthat/test-emmeans.R | 2 broom-0.7.1/broom/tests/testthat/test-lfe.R | 45 + broom-0.7.1/broom/tests/testthat/test-lmtest.R | 28 - broom-0.7.1/broom/tests/testthat/test-margins.R |only broom-0.7.1/broom/tests/testthat/test-mclogit.R | 3 broom-0.7.1/broom/tests/testthat/test-zoo.R | 7 broom-0.7.1/broom/vignettes/broom.Rmd | 4 269 files changed, 1585 insertions(+), 1004 deletions(-)
Title: Age-Period-Cohort Analysis
Description: Functions for age-period-cohort analysis. Aggregate data can be organised in matrices indexed by age-cohort, age-period or cohort-period. The data can include dose and response or just doses. The statistical model is a generalized linear model (GLM) allowing for 3,2,1 or 0 of the age-period-cohort factors. Individual-level data should have a row for each individual and columns for each of age, period, and cohort. The statistical model for repeated cross-section is a generalized linear model. The statistical model for panel data is ordinary least squares. The canonical parametrisation of Kuang, Nielsen and Nielsen (2008) <DOI:10.1093/biomet/asn026> is used. Thus, the analysis does not rely on ad hoc identification.
Author: Zoe Fannon, Bent Nielsen
Maintainer: Bent Nielsen <bent.nielsen@nuffield.ox.ac.uk>
Diff between apc versions 1.3 dated 2016-12-01 and 2.0.0 dated 2020-10-01
apc-1.3/apc/inst/doc/Vignettes.Rnw |only apc-1.3/apc/inst/doc/Vignettes.pdf |only apc-1.3/apc/man/apc_1.3-package.Rd |only apc-1.3/apc/man/vector.2.triangle.Rd |only apc-1.3/apc/vignettes/Vignettes.Rnw |only apc-2.0.0/apc/DESCRIPTION | 15 apc-2.0.0/apc/MD5 | 117 +++- apc-2.0.0/apc/NAMESPACE | 15 apc-2.0.0/apc/NEWS | 60 ++ apc-2.0.0/apc/R/apc_data.R | 82 +++ apc-2.0.0/apc/R/apc_data_sets.R | 123 +++++ apc-2.0.0/apc/R/apc_fit.R | 106 ++-- apc-2.0.0/apc/R/apc_forecast.R | 97 ++-- apc-2.0.0/apc/R/apc_get_index.R | 240 ++++------ apc-2.0.0/apc/R/apc_identify.R | 203 ++++++-- apc-2.0.0/apc/R/apc_indiv.R |only apc-2.0.0/apc/R/apc_plot_data.R | 101 ++-- apc-2.0.0/apc/R/apc_plot_fit.R | 186 +++++-- apc-2.0.0/apc/R/new_apc_identify.R |only apc-2.0.0/apc/R/new_apc_plot_fit.R |only apc-2.0.0/apc/build/vignette.rds |binary apc-2.0.0/apc/inst/doc/Identification.R |only apc-2.0.0/apc/inst/doc/Identification.Rnw |only apc-2.0.0/apc/inst/doc/Identification.pdf |only apc-2.0.0/apc/inst/doc/IntroductionAggregateData.R |only apc-2.0.0/apc/inst/doc/IntroductionAggregateData.pdf |only apc-2.0.0/apc/inst/doc/IntroductionAggregateData.rnw |only apc-2.0.0/apc/inst/doc/IntroductionIndividualData.R |only apc-2.0.0/apc/inst/doc/IntroductionIndividualData.pdf |only apc-2.0.0/apc/inst/doc/IntroductionIndividualData.rnw |only apc-2.0.0/apc/inst/doc/IntroductionIndividualDataFurtherExamples.R |only apc-2.0.0/apc/inst/doc/IntroductionIndividualDataFurtherExamples.pdf |only apc-2.0.0/apc/inst/doc/IntroductionIndividualDataFurtherExamples.rnw |only apc-2.0.0/apc/inst/doc/NewDesign.R |only apc-2.0.0/apc/inst/doc/NewDesign.Rnw |only apc-2.0.0/apc/inst/doc/NewDesign.pdf |only apc-2.0.0/apc/inst/doc/ReproducingHN2016.R |only apc-2.0.0/apc/inst/doc/ReproducingHN2016.Rnw |only apc-2.0.0/apc/inst/doc/ReproducingHN2016.pdf |only apc-2.0.0/apc/inst/doc/ReproducingKN2020.R |only apc-2.0.0/apc/inst/doc/ReproducingKN2020.Rnw |only apc-2.0.0/apc/inst/doc/ReproducingKN2020.pdf |only apc-2.0.0/apc/inst/doc/ReproducingMMNN2015.R |only apc-2.0.0/apc/inst/doc/ReproducingMMNN2015.Rnw |only apc-2.0.0/apc/inst/doc/ReproducingMMNN2015.pdf |only apc-2.0.0/apc/inst/doc/ReproducingMMNN2016.R |only apc-2.0.0/apc/inst/doc/ReproducingMMNN2016.Rnw |only apc-2.0.0/apc/inst/doc/ReproducingMMNN2016.pdf |only apc-2.0.0/apc/man/apc.data.list.Rd | 8 apc-2.0.0/apc/man/apc.data.list.subset.Rd | 2 apc-2.0.0/apc/man/apc.data.sums.Rd | 37 + apc-2.0.0/apc/man/apc.fit.model.Rd | 31 - apc-2.0.0/apc/man/apc.forecast.Rd | 6 apc-2.0.0/apc/man/apc.forecast.ac.Rd | 57 +- apc-2.0.0/apc/man/apc.forecast.ap.Rd | 2 apc-2.0.0/apc/man/apc.forecast.apc.Rd | 2 apc-2.0.0/apc/man/apc.get.design.Rd | 10 apc-2.0.0/apc/man/apc.get.index.Rd | 2 apc-2.0.0/apc/man/apc.hypothesis.Rd |only apc-2.0.0/apc/man/apc.identify.Rd | 14 apc-2.0.0/apc/man/apc.indiv.compare.direct.Rd |only apc-2.0.0/apc/man/apc.indiv.est.model.Rd |only apc-2.0.0/apc/man/apc.indiv.model.table.Rd |only apc-2.0.0/apc/man/apc.plot.data.all.Rd | 8 apc-2.0.0/apc/man/apc.plot.data.sparsity.Rd | 9 apc-2.0.0/apc/man/apc.plot.data.sums.Rd | 17 apc-2.0.0/apc/man/apc.plot.data.within.Rd | 2 apc-2.0.0/apc/man/apc.plot.fit.Rd | 78 ++- apc-2.0.0/apc/man/apc.polygon.Rd | 8 apc-2.0.0/apc/man/apc_2.0.0-package.Rd |only apc-2.0.0/apc/man/data.Belgian.lung.cancer.Rd | 4 apc-2.0.0/apc/man/data.asbestos.Rd | 6 apc-2.0.0/apc/man/data.loss.VNJ.Rd | 2 apc-2.0.0/apc/man/data.loss.XL.Rd |only apc-2.0.0/apc/man/new.apc.identify.Rd |only apc-2.0.0/apc/man/new.apc.plot.fit.Rd |only apc-2.0.0/apc/man/triangle.Rd |only apc-2.0.0/apc/vignettes/Identification.Rnw |only apc-2.0.0/apc/vignettes/IntroductionAggregateData.rnw |only apc-2.0.0/apc/vignettes/IntroductionIndividualData.rnw |only apc-2.0.0/apc/vignettes/IntroductionIndividualDataFurtherExamples.rnw |only apc-2.0.0/apc/vignettes/NewDesign.Rnw |only apc-2.0.0/apc/vignettes/ReproducingHN2016.Rnw |only apc-2.0.0/apc/vignettes/ReproducingKN2020.Rnw |only apc-2.0.0/apc/vignettes/ReproducingMMNN2015.Rnw |only apc-2.0.0/apc/vignettes/ReproducingMMNN2016.Rnw |only 86 files changed, 1181 insertions(+), 469 deletions(-)
Title: 'rmarkdown' Extension for Formatted 'RJDemetra' Outputs
Description: Functions to have nice 'rmarkdown' outputs of the
seasonal and trading day adjustment models made with 'RJDemetra'.
Author: Alain Quartier-la-Tente [aut, cre]
(<https://orcid.org/0000-0001-7890-3857>)
Maintainer: Alain Quartier-la-Tente <alain.quartier@yahoo.fr>
Diff between rjdmarkdown versions 0.1.0 dated 2020-05-08 and 0.2.0 dated 2020-10-01
DESCRIPTION | 8 MD5 | 37 +- NAMESPACE | 8 NEWS.md |only R/create_rmd.R |only R/print_decomposition.R | 23 - R/print_diagnostics.R | 14 R/print_preprocessing.R | 14 README.md | 38 ++ inst/doc/rjdmarkdown-html.R | 61 +++ inst/doc/rjdmarkdown-html.Rmd | 74 ++++ inst/doc/rjdmarkdown-html.html | 668 +++++++++++++++++++---------------------- inst/doc/rjdmarkdown-pdf.R | 63 +++ inst/doc/rjdmarkdown-pdf.Rmd | 78 ++++ inst/doc/rjdmarkdown-pdf.pdf |binary man/create_rmd.Rd |only man/print_decomposition.Rd | 2 man/print_diagnostics.Rd | 2 man/print_preprocessing.Rd | 2 vignettes/rjdmarkdown-html.Rmd | 74 ++++ vignettes/rjdmarkdown-pdf.Rmd | 78 ++++ 21 files changed, 823 insertions(+), 421 deletions(-)
Title: An R Wrapper for the 'OpenTripPlanner' REST API
Description: A wrapper for the 'OpenTripPlanner' <http://www.opentripplanner.org/>
REST API. Queries are submitted to the relevant 'OpenTripPlanner' API resource, the response
is parsed and useful R objects are returned.
Author: Marcus Young [aut, cre] (<https://orcid.org/0000-0003-4627-1116>)
Maintainer: Marcus Young <M.A.Young@soton.ac.uk>
Diff between otpr versions 0.4.1 dated 2020-05-28 and 0.4.2 dated 2020-10-01
otpr-0.4.1/otpr/man/figures/unnamed-chunk-8-1.png |only otpr-0.4.2/otpr/DESCRIPTION | 12 - otpr-0.4.2/otpr/MD5 | 35 ++- otpr-0.4.2/otpr/R/otp-connect.R | 17 - otpr-0.4.2/otpr/R/otp_get_distance.R | 38 ++-- otpr-0.4.2/otpr/R/otp_get_times.R | 48 +++-- otpr-0.4.2/otpr/R/otpr_get_isochrone.R | 145 ++++++++-------- otpr-0.4.2/otpr/README.md | 87 ++++++--- otpr-0.4.2/otpr/inst/CITATION | 13 - otpr-0.4.2/otpr/man/figures/BuyMeACoffee_blue@2x.png |only otpr-0.4.2/otpr/man/figures/logo.png |only otpr-0.4.2/otpr/man/figures/sticker.png |only otpr-0.4.2/otpr/man/figures/unnamed-chunk-9-1.png |only otpr-0.4.2/otpr/man/otp_get_distance.Rd | 5 otpr-0.4.2/otpr/man/otp_get_isochrone.Rd | 4 otpr-0.4.2/otpr/man/otp_get_times.Rd | 17 + otpr-0.4.2/otpr/tests/launch-otp.R |only otpr-0.4.2/otpr/tests/testthat.R | 2 otpr-0.4.2/otpr/tests/testthat/test-otp_connect.R | 5 otpr-0.4.2/otpr/tests/testthat/test-otp_get_distance.R |only otpr-0.4.2/otpr/tests/testthat/test-otp_get_isochrone.R |only otpr-0.4.2/otpr/tests/testthat/test-otp_get_times.R |only otpr-0.4.2/otpr/tests/testthat/test-utility_functions.R |only otpr-0.4.2/otpr/tests/zend.R |only 24 files changed, 262 insertions(+), 166 deletions(-)
Title: Classes and Methods for Seismic Data Analysis
Description: Provides classes and methods for seismic data analysis. The
base classes and methods are inspired by the python code found in
the 'ObsPy' python toolbox <https://github.com/obspy/obspy>. Additional classes and
methods support data returned by web services provided by the 'IRIS DMC'
<http://service.iris.edu/>.
Author: Jonathan Callahan [aut],
Rob Casey [aut],
Gillian Sharer [aut, cre],
Mary Templeton [aut],
Chad Trabant [ctb]
Maintainer: Gillian Sharer <gillian@iris.washington.edu>
Diff between IRISSeismic versions 1.5.2 dated 2019-10-22 and 1.6.0 dated 2020-10-01
DESCRIPTION | 8 MD5 | 54 +-- NAMESPACE | 2 R/Class-IrisClient.R | 225 ++++++++++++++- R/Class-Stream.R | 6 R/Class-Trace.R | 12 R/spectralUtils.R | 52 +++ build/vignette.rds |binary inst/doc/IRISSeismic-intro.R | 36 +- inst/doc/IRISSeismic-intro.Rmd | 6 inst/doc/IRISSeismic-intro.html | 600 ++++++++++++++++++++++++++-------------- man/IRISSeismic-package.Rd | 10 man/IrisClient-class.Rd | 2 man/STALTA.Rd | 4 man/Stream-class.Rd | 2 man/Trace-class.Rd | 2 man/TraceHeader-class.Rd | 2 man/crossSpectrum.Rd | 2 man/getAvailability.Rd | 2 man/getChannel.Rd | 2 man/getDataselect.Rd | 2 man/getEvent.Rd | 4 man/getNetwork.Rd | 2 man/getStation.Rd | 2 man/getTimeseries.Rd |only man/getUnavailability.Rd | 2 man/surfaceDistance.Rd | 2 man/transferFunctionSpectra.Rd |only vignettes/IRISSeismic-intro.Rmd | 6 29 files changed, 770 insertions(+), 279 deletions(-)
Title: Regularized Structural Equation Modeling
Description: Uses both ridge and lasso penalties (and extensions) to penalize
specific parameters in structural equation models. The package offers additional
cost functions, cross validation, and other extensions beyond traditional structural
equation models. Also contains a function to perform exploratory mediation (XMed).
Author: Ross Jacobucci[aut,cre],
Kevin J. Grimm [ctb],
Andreas M. Brandmaier [ctb],
Sarfaraz Serang [ctb],
Rogier A. Kievit [ctb],
Florian Scharf [ctb],
Xiaobei Li [ctb],
Ai Ye [ctb]
Maintainer: Ross Jacobucci <rcjacobuc@gmail.com>
Diff between regsem versions 1.5.2 dated 2020-02-19 and 1.6.2 dated 2020-10-01
DESCRIPTION | 17 ++++++----- MD5 | 38 ++++++++++++------------- R/RcppExports.R | 8 ++++- R/multi_optim.R | 6 ++-- R/regsem.R | 50 ++++++++++++++++++++++++++------- build/vignette.rds |binary inst/doc/short_intro.R | 20 ++++++------- man/cv_regsem.Rd | 65 +++++++++++++++++++++++++++++++++----------- man/fit_indices.Rd | 3 -- man/multi_optim.Rd | 45 +++++++++++++++++++++++------- man/plot.cvregsem.Rd | 22 ++++++++++++-- man/rcpp_fit_fun.Rd | 25 +++++++++++++++- man/rcpp_grad_ram.Rd | 16 +++++++++- man/regsem.Rd | 53 ++++++++++++++++++++++++++++------- man/stabsel.Rd | 26 ++++++++++++++--- man/stabsel_par.Rd | 26 ++++++++++++++--- man/stabsel_thr.Rd | 16 ++++++++-- man/xmed.Rd | 13 +++++++- src/RcppExports.cpp | 12 +++++--- src/regsem_rcpp_fit_fun.cpp | 13 ++++++++ 20 files changed, 355 insertions(+), 119 deletions(-)
Title: R Client for the Microsoft Cognitive Services 'Text-to-Speech'
REST API
Description: R Client for the Microsoft Cognitive Services
'Text-to-Speech' REST API, including voice synthesis. A valid account
must be registered at the Microsoft Cognitive Services website
<https://azure.microsoft.com/services/cognitive-services/> in order to
obtain a (free) API key. Without an API key, this package will not
work properly.
Author: John Muschelli [aut, cre] (<https://orcid.org/0000-0001-6469-1750>)
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between mscstts versions 0.5.6 dated 2020-08-10 and 0.6.0 dated 2020-10-01
DESCRIPTION | 9 MD5 | 27 - NEWS.md | 8 R/create_ssml.R | 2 R/language_to_ms_name.R | 5 R/ms_list_voices.R | 4 R/ms_locale_names.R |only R/ms_locales.R | 732 ------------------------------------------ README.md | 74 ++-- data |only man/ms_list_voices.Rd | 4 man/ms_locale_names.Rd |only man/ms_locales.Rd | 1 man/ms_locales_df.Rd |only tests/testthat/test-locales.R | 2 tests/testthat/test-ssml.R | 21 - 16 files changed, 111 insertions(+), 778 deletions(-)
Title: Animal Movement Tools
Description: Manage and analyze animal movement data. The functionality of 'amt' includes methods to calculate track statistics (e.g. step lengths, speed, or turning angles), prepare data for fitting habitat selection analyses (resource selection functions and step-selection functions <doi:10.1890/04-0953> and integrated step-selection functions <doi:10.1111/2041-210X.12528>), and simulation of space-use from fitted step-selection functions <doi:10.1002/ecs2.1771>.
Author: Johannes Signer [aut, cre],
Brian Smith [ctb],
Bjoern Reineking [ctb],
Ulrike Schlaegel [ctb],
Scott LaPoint [dtc]
Maintainer: Johannes Signer <jsigner@gwdg.de>
Diff between amt versions 0.1.2 dated 2020-06-14 and 0.1.3 dated 2020-10-01
amt-0.1.2/amt/R/cumulative_ud.R |only amt-0.1.2/amt/data/amt_fisher_lu.rda |only amt-0.1.2/amt/man/amt_fisher_lu.Rd |only amt-0.1.3/amt/DESCRIPTION | 17 amt-0.1.3/amt/MD5 | 102 ++--- amt-0.1.3/amt/NAMESPACE | 54 +- amt-0.1.3/amt/NEWS.md | 11 amt-0.1.3/amt/R/amt.R | 3 amt-0.1.3/amt/R/as_track.R | 7 amt-0.1.3/amt/R/coercion.R | 67 +++ amt-0.1.3/amt/R/data-fisher.R | 35 + amt-0.1.3/amt/R/distributions.R | 314 +++++++++++++++ amt-0.1.3/amt/R/fit_logit.R | 2 amt-0.1.3/amt/R/hr_akde.R | 6 amt-0.1.3/amt/R/hr_area.R | 2 amt-0.1.3/amt/R/hr_cud.R |only amt-0.1.3/amt/R/hr_isopleths.R | 9 amt-0.1.3/amt/R/hr_kde.R | 2 amt-0.1.3/amt/R/hr_locoh.R | 6 amt-0.1.3/amt/R/hr_mcp.R | 1 amt-0.1.3/amt/R/hr_od.R |only amt-0.1.3/amt/R/hr_overlap.R | 103 ++--- amt-0.1.3/amt/R/hr_ud.R | 10 amt-0.1.3/amt/R/log_rss.R | 364 ++++++++++++++++-- amt-0.1.3/amt/R/random_points.R | 2 amt-0.1.3/amt/R/random_steps.R | 13 amt-0.1.3/amt/R/steps.R | 1 amt-0.1.3/amt/R/time_of_day.R | 4 amt-0.1.3/amt/build/partial.rdb |binary amt-0.1.3/amt/data/amt_fisher.rda |binary amt-0.1.3/amt/data/amt_fisher_covar.rda |only amt-0.1.3/amt/inst/WORDLIST | 7 amt-0.1.3/amt/inst/doc/p1_getting_started.html | 300 +++++++------- amt-0.1.3/amt/inst/doc/p3_rsf.html | 169 ++++---- amt-0.1.3/amt/inst/doc/p4_SSF.html | 304 ++++++++------- amt-0.1.3/amt/inst/doc/p5_other_packages.html | 127 +++--- amt-0.1.3/amt/inst/tinytest/test_as_sf_star.R |only amt-0.1.3/amt/inst/tinytest/test_extract_covariates.R | 44 +- amt-0.1.3/amt/inst/tinytest/test_hr.R | 54 ++ amt-0.1.3/amt/inst/tinytest/test_log_rss.R |only amt-0.1.3/amt/man/amt-package.Rd | 2 amt-0.1.3/amt/man/amt_fisher.Rd | 13 amt-0.1.3/amt/man/amt_fisher_covar.Rd |only amt-0.1.3/amt/man/as_sf_lines.Rd |only amt-0.1.3/amt/man/as_sf_points.Rd |only amt-0.1.3/amt/man/boot1.Rd |only amt-0.1.3/amt/man/bootstrap_logrss.Rd |only amt-0.1.3/amt/man/cum_ud.Rd | 13 amt-0.1.3/amt/man/deer.Rd | 6 amt-0.1.3/amt/man/get_distr.Rd |only amt-0.1.3/amt/man/hr.Rd | 38 + amt-0.1.3/amt/man/hr_intersection.Rd |only amt-0.1.3/amt/man/hr_overlaps.Rd | 8 amt-0.1.3/amt/man/hr_ud.Rd |only amt-0.1.3/amt/man/log_rss.Rd | 59 +- amt-0.1.3/amt/man/plot.log_rss.Rd | 17 amt-0.1.3/amt/man/reexports.Rd | 14 amt-0.1.3/amt/man/sh.Rd | 22 - amt-0.1.3/amt/man/sh_forest.Rd | 4 amt-0.1.3/amt/man/update_distr.Rd |only amt-0.1.3/amt/man/update_distr_man.Rd |only 61 files changed, 1654 insertions(+), 682 deletions(-)
Title: Succinct and Correct Statistical Summaries for Reports
Description: Succinctly and correctly format statistical summaries of
various models and tests (F-test, Chi-Sq-test, Fisher-test, T-test, and rank-significance). The main purpose is unified reporting
of experimental results, working around issue such as the difficulty of
extracting model summary facts (such as with 'lm'/'glm'). This package also
includes empirical tests, such as bootstrap estimates.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between sigr versions 1.1.1 dated 2020-09-22 and 1.1.2 dated 2020-10-01
DESCRIPTION | 8 ++--- MD5 | 23 +++++++++------ NAMESPACE | 3 ++ NEWS.md | 6 ++++ R/FTest.R | 52 ++++++++++++++++++++++++------------ R/model_utility.R |only inst/doc/lmExample.html | 4 +- inst/doc/sigrFormatting.html | 4 +- inst/unit_tests/test_utility_calc.R |only man/check_utility_calc.Rd |only man/model_utility.Rd |only man/wrapFTest.data.frame.Rd | 8 ----- man/wrapFTest.htest.Rd |only man/wrapFTest.lm.Rd | 6 ---- man/wrapFTest.summary.lm.Rd | 6 ---- 15 files changed, 70 insertions(+), 50 deletions(-)
Title: Multiple Precision Arithmetic
Description: Multiple Precision Arithmetic (big integers and rationals,
prime number tests, matrix computation), "arithmetic without limitations"
using the C library GMP (GNU Multiple Precision Arithmetic).
Author: Antoine Lucas, Immanuel Scholz, Rainer Boehme <rb-gmp@reflex-studio.de>,
Sylvain Jasson <Sylvain.Jasson@inrae.fr>,
Martin Maechler <maechler@stat.math.ethz.ch>
Maintainer: Antoine Lucas <antoinelucas@gmail.com>
Diff between gmp versions 0.6-0 dated 2020-06-09 and 0.6-1 dated 2020-10-01
ChangeLog | 23 ++++++++++++ DESCRIPTION | 12 +++--- MD5 | 58 ++++++++++++++++---------------- NAMESPACE | 6 ++- R/AllClasses-etc.R | 10 ----- R/Stirling-n-etc.R | 87 ++++++++++++++++++++++++++++++++++++------------- R/biginteger.R | 11 ++++-- R/bigq.R | 44 +++++++++++++++--------- R/zzz.R | 7 +++ TODO | 20 +++++++---- man/BernoulliQ.Rd |only man/Stirling.Rd | 4 +- man/add.biginteger.Rd | 2 - man/biginteger.Rd | 22 +++++++++++- man/biginteger.rand.Rd | 2 - man/bigrational.Rd | 32 +++++++++++++++--- man/extreme.Rd | 6 ++- man/factor.Rd | 2 - man/fibonacci.Rd | 2 - man/gcd.Rd | 2 - man/gcdex.Rd | 2 - man/isprime.Rd | 2 - man/nextprime.Rd | 2 - man/roundQ.Rd |only man/sizeinbase.Rd | 2 - man/utils.Rd | 2 - src/bigvec.cc | 20 +++++------ src/solve.h | 4 +- src/templateMatrix.h | 14 +++---- tests/arith-ex.R | 37 ++++++++++++++++++++ tests/basic-ex.R | 11 ++++++ 31 files changed, 316 insertions(+), 132 deletions(-)
Title: 'pinp' is not 'PNAS'
Description: A 'PNAS'-alike style for 'rmarkdown', derived from the
'Proceedings of the National Academy of Sciences of the United States
of America' ('PNAS', see <https://www.pnas.org>) 'LaTeX' style, and
adapted for use with 'markdown' and 'pandoc'.
Author: Dirk Eddelbuettel and James Balamuta
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between pinp versions 0.0.9 dated 2019-09-15 and 0.0.10 dated 2020-10-01
ChangeLog | 36 +++++++++++++++++++- DESCRIPTION | 8 ++-- MD5 | 28 +++++++-------- R/pinp.R | 19 ++++++++-- README.md | 25 ++++++++++--- build/vignette.rds |binary inst/NEWS.Rd | 11 +++++- inst/doc/pinp.R | 4 +- inst/doc/pinp.Rmd | 9 ++--- inst/doc/pinp.pdf |binary inst/rmarkdown/templates/pdf/resources/template.tex | 4 ++ inst/rmarkdown/templates/pdf/skeleton/pinp.cls | 27 ++++++++++++--- inst/rmarkdown/templates/pdf/skeleton/skeleton.Rmd | 6 ++- man/pinp.Rd | 19 ++++++++-- vignettes/pinp.Rmd | 9 ++--- 15 files changed, 155 insertions(+), 50 deletions(-)
Title: Exploratory and Descriptive Event-Based Data Analysis
Description: Exploratory and descriptive analysis of event based data. Provides methods for describing and selecting process data, and for preparing event log data for process mining. Builds on the S3-class for event logs implemented in the package 'bupaR'.
Author: Gert Janssenswillen [aut, cre],
Marijke Swennen [ctb]
Maintainer: Gert Janssenswillen <gert.janssenswillen@uhasselt.be>
Diff between edeaR versions 0.8.5 dated 2020-06-17 and 0.8.6 dated 2020-10-01
DESCRIPTION | 8 ++++---- MD5 | 12 +++++++----- NAMESPACE | 2 ++ R/filter_infrequent_flows.R |only R/plot.referral_matrix.R | 2 +- inst/doc/filters.html | 4 ++-- inst/doc/metrics.html | 12 ++++++------ man/filter_infrequent_flows.Rd |only 8 files changed, 22 insertions(+), 18 deletions(-)
Title: A Functionally Oriented Interface for Integrating 'Julia' with R
Description: Allows to import functions and whole packages from 'Julia' in R.
Imported 'Julia' functions can directly be called as R functions.
Data structures can be translated between 'Julia' and R.
Author: Stefan Lenz [aut, cre] (<https://orcid.org/0000-0001-9135-1743>),
Harald Binder [aut] (<https://orcid.org/0000-0002-5666-8662>)
Maintainer: Stefan Lenz <stefan-m-lenz@web.de>
Diff between JuliaConnectoR versions 0.6.1 dated 2020-08-12 and 0.6.2 dated 2020-10-01
JuliaConnectoR-0.6.1/JuliaConnectoR/tests/testthat/Rplots.pdf |only JuliaConnectoR-0.6.2/JuliaConnectoR/DESCRIPTION | 6 JuliaConnectoR-0.6.2/JuliaConnectoR/LICENCE | 2 JuliaConnectoR-0.6.2/JuliaConnectoR/MD5 | 73 JuliaConnectoR-0.6.2/JuliaConnectoR/NAMESPACE | 54 JuliaConnectoR-0.6.2/JuliaConnectoR/R/JuliaConnectoR-package.R | 340 +- JuliaConnectoR-0.6.2/JuliaConnectoR/R/accessing_mutating.R | 364 +- JuliaConnectoR-0.6.2/JuliaConnectoR/R/connecting.R | 430 +-- JuliaConnectoR-0.6.2/JuliaConnectoR/R/handling_dataframes.R | 94 JuliaConnectoR-0.6.2/JuliaConnectoR/R/importing.R | 11 JuliaConnectoR-0.6.2/JuliaConnectoR/R/main.R | 21 JuliaConnectoR-0.6.2/JuliaConnectoR/R/reading.R | 11 JuliaConnectoR-0.6.2/JuliaConnectoR/R/writing.R | 426 +-- JuliaConnectoR-0.6.2/JuliaConnectoR/inst/Julia/RConnector.jl | 116 JuliaConnectoR-0.6.2/JuliaConnectoR/inst/Julia/accessing_mutating.jl | 364 +- JuliaConnectoR-0.6.2/JuliaConnectoR/inst/Julia/communicating.jl | 484 ++- JuliaConnectoR-0.6.2/JuliaConnectoR/inst/Julia/dummy_tables.jl | 16 JuliaConnectoR-0.6.2/JuliaConnectoR/inst/Julia/evaluating.jl | 448 +-- JuliaConnectoR-0.6.2/JuliaConnectoR/inst/Julia/exporting.jl | 76 JuliaConnectoR-0.6.2/JuliaConnectoR/inst/Julia/handling_dataframes.jl | 158 - JuliaConnectoR-0.6.2/JuliaConnectoR/inst/Julia/handling_undefined.jl | 66 JuliaConnectoR-0.6.2/JuliaConnectoR/inst/Julia/main.jl | 42 JuliaConnectoR-0.6.2/JuliaConnectoR/inst/Julia/reading.jl | 690 ++--- JuliaConnectoR-0.6.2/JuliaConnectoR/inst/Julia/sharing.jl | 270 +- JuliaConnectoR-0.6.2/JuliaConnectoR/inst/Julia/writing.jl | 1226 +++++----- JuliaConnectoR-0.6.2/JuliaConnectoR/inst/examples/TestModule1.jl | 32 JuliaConnectoR-0.6.2/JuliaConnectoR/inst/examples/boltzmann-example.R | 182 - JuliaConnectoR-0.6.2/JuliaConnectoR/inst/examples/iris-example/iris-example.R | 176 - JuliaConnectoR-0.6.2/JuliaConnectoR/inst/examples/iris-example/iris-example.jl | 144 - JuliaConnectoR-0.6.2/JuliaConnectoR/inst/examples/iris-example/project_1_0/Manifest.toml | 1008 ++++---- JuliaConnectoR-0.6.2/JuliaConnectoR/inst/examples/iris-example/project_1_0/Project.toml | 28 JuliaConnectoR-0.6.2/JuliaConnectoR/inst/examples/iris-example/project_1_4/Manifest.toml | 1100 ++++---- JuliaConnectoR-0.6.2/JuliaConnectoR/inst/examples/iris-example/project_1_4/Project.toml | 8 JuliaConnectoR-0.6.2/JuliaConnectoR/man/juliaCall.Rd | 10 JuliaConnectoR-0.6.2/JuliaConnectoR/man/juliaSetupOk.Rd | 2 JuliaConnectoR-0.6.2/JuliaConnectoR/tests/testthat.R | 14 JuliaConnectoR-0.6.2/JuliaConnectoR/tests/testthat/helper.R | 70 JuliaConnectoR-0.6.2/JuliaConnectoR/tests/testthat/test.R | 11 38 files changed, 4294 insertions(+), 4279 deletions(-)
More information about JuliaConnectoR at CRAN
Permanent link
Title: Estimate the Shattering Coefficient for a Particular Dataset
Description: The Statistical Learning Theory (SLT) provides the theoretical background to ensure that a supervised algorithm generalizes the mapping f:X -> Y given f is selected from its search space bias F. This formal result depends on the Shattering coefficient function N(F,2n) to upper bound the empirical risk minimization principle, from which one can estimate the necessary training sample size to ensure the probabilistic learning convergence and, most importantly, the characterization of the capacity of F, including its under and overfitting abilities while addressing specific target problems. In this context, we propose a new approach to estimate the maximal number of hyperplanes required to shatter a given sample, i.e., to separate every pair of points from one another, based on the recent contributions by Har-Peled and Jones in the dataset partitioning scenario, and use such foundation to analytically compute the Shattering coefficient function for both binary and multi-class problems. As main contributions, one can use our approach to study the complexity of the search space bias F, estimate training sample sizes, and parametrize the number of hyperplanes a learning algorithm needs to address some supervised task, what is specially appealing to deep neural networks. Reference: de Mello, R.F. (2019) "On the Shattering Coefficient of Supervised Learning Algorithms" <arXiv:1911.05461>; de Mello, R.F., Ponti, M.A. (2018, ISBN: 978-3319949888) "Machine Learning: A Practical Approach on the Statistical Learning Theory".
Author: Rodrigo F. de Mello [aut, cre]
(<https://orcid.org/0000-0002-0435-3992>)
Maintainer: Rodrigo F. de Mello <mello@icmc.usp.br>
Diff between shattering versions 1.0 dated 2020-09-25 and 1.0.1 dated 2020-10-01
DESCRIPTION | 9 +++++---- MD5 | 8 +++++--- NAMESPACE | 3 +-- R/complexity_analysis.R |only R/run_test.R | 4 ++-- man/complexity_analysis.Rd |only 6 files changed, 13 insertions(+), 11 deletions(-)
Title: Tools for the Analysis of Air Pollution Data
Description: Tools to analyse, interpret and understand air
pollution data. Data are typically hourly time series
and both monitoring data and dispersion model output
can be analysed. Many functions can also be applied to
other data, including meteorological and traffic data.
Author: David Carslaw [aut, cre],
Karl Ropkins [aut]
Maintainer: David Carslaw <david.carslaw@york.ac.uk>
Diff between openair versions 2.7-4 dated 2020-06-18 and 2.7-6 dated 2020-10-01
DESCRIPTION | 12 MD5 | 58 - R/TheilSen.R | 2 R/calcFno2.R | 578 +++++----- R/checkPrep.R | 2 R/cutData.R | 9 R/getMeta.R | 4 R/importEUR.R | 2 R/importUKAQ.R | 4 R/modStats.R | 739 ++++++------- R/mydata.R | 90 - R/openColours.R | 4 R/openair-package.R | 175 +-- R/percentileRose.R | 4 R/polarPlot.R | 2 R/scatterPlot.R | 4 R/smoothTrend.R | 2 R/timeAverage.R | 9 R/timeVariation.R | 2424 ++++++++++++++++++++++---------------------- R/utilities.R | 4 README.md | 148 +- man/TheilSen.Rd | 2 man/calcFno2.Rd | 2 man/cutData.Rd | 2 man/mydata.Rd | 2 man/openColours.Rd | 4 man/openair.Rd | 9 man/polarPlot.Rd | 2 tools/unnamed-chunk-6-1.png |binary tools/unnamed-chunk-7-1.png |binary 30 files changed, 2146 insertions(+), 2153 deletions(-)
Title: Interface to the JavaScript Library 'amCharts 4'
Description: Creates JavaScript charts. The charts can be included in 'Shiny' apps and R markdown documents, or viewed from the R console and 'RStudio' viewer. Based on the JavaScript library 'amCharts 4' and the R packages 'htmlwidgets' and 'reactR'. Currently available types of chart are: vertical and horizontal bar chart, radial bar chart, vertical and horizontal Dumbbell chart, line chart, scatter chart, range area chart, and gauge chart.
Author: Stéphane Laurent [aut, cre],
Antanas Marcelionis [ctb, cph] ('amCharts' library
(https://www.amcharts.com/)),
Terence Eden [ctb, cph] ('SuperTinyIcons' library
(https://github.com/edent/SuperTinyIcons/)),
Tom Alexander [ctb, cph] ('regression-js' library
(https://github.com/Tom-Alexander/regression-js))
Maintainer: Stéphane Laurent <laurent_step@outlook.fr>
Diff between rAmCharts4 versions 0.1.0 dated 2020-08-24 and 1.0.0 dated 2020-10-01
DESCRIPTION | 9 LICENSE.note |only MD5 | 26 NAMESPACE | 5 NEWS.md | 6 R/amGaugeChart.R |only R/font.R |only R/hand.R |only R/internal.R | 4 R/shiny.R | 64 + README.md | 94 - inst/htmlwidgets/amChart4.js | 1991 +++++++++++++++++++++++++++++++-------- inst/htmlwidgets/amChart4.js.map | 2 man/amFont.Rd |only man/amGaugeChart.Rd |only man/amHand.Rd |only man/rAmCharts4-shiny.Rd | 8 man/updateAmGaugeChart.Rd |only 18 files changed, 1722 insertions(+), 487 deletions(-)
Title: Tools and GUI for Analyzing Time Series Data of Just Finance and
Econometrics
Description: Support the analysis of financial and econometric time series, including recursive forecasts for machine learning.
Author: Ho Tsung-wu
Maintainer: Ho Tsung-wu <tsungwu@ntnu.edu.tw>
Diff between JFE versions 2.1.3 dated 2019-08-05 and 2.5.1 dated 2020-10-01
DESCRIPTION | 18 ++++++---- MD5 | 70 ++++++++++++++++++++++-------------------- NAMESPACE | 7 ++-- R/05PortoflioMore.R | 7 ++++ R/07timeSeriesML.R |only R/JFE.R | 1 R/PerformanceIndex.R | 2 - data/macrodata.rda |only man/ActivePremium.Rd | 2 - man/AdjustedSharpeRatio.Rd | 4 +- man/AppraisalRatio.Rd | 2 - man/BernardoLedoitRatio.Rd | 2 - man/BurkeRatio.Rd | 2 - man/CAPM.jensenAlpha.Rd | 2 - man/CalmarRatio.Rd | 2 - man/DRatio.Rd | 2 - man/DownsideDeviation.Rd | 9 +---- man/InformationRatio.Rd | 2 - man/KellyRatio.Rd | 5 +-- man/M2Sortino.Rd | 2 - man/MartinRatio.Rd | 2 - man/MeanAbsoluteDeviation.Rd | 2 - man/OmegaSharpeRatio.Rd | 2 - man/PainIndex.Rd | 2 - man/PainRatio.Rd | 2 - man/ProspectRatio.Rd | 2 - man/Return.annualized.Rd | 2 - man/SharpeRatio.annualized.Rd | 2 - man/SkewnessKurtosisRatio.Rd | 2 - man/SortinoRatio.Rd | 2 - man/TrackingError.Rd | 2 - man/TreynorRatio.Rd | 4 +- man/UlcerIndex.Rd | 6 +-- man/data-sets.Rd | 7 +++- man/maxDrawdown.Rd | 2 - man/ttsAutoML.Rd |only man/ttsCaret.Rd |only man/ttsLSTM.Rd |only man/ttsPlot.Rd |only 39 files changed, 99 insertions(+), 83 deletions(-)
Title: Comprehensive and Easy to Use Quality Control of GWAS Results
Description: When evaluating the results of a genome-wide association study (GWAS), it is important to perform a quality control to ensure that the results are valid, complete, correctly formatted, and, in case of meta-analysis, consistent with other studies that have applied the same analysis. This package was developed to facilitate and streamline this process and provide the user with a comprehensive report.
Author: Alireza Ani [aut, cre],
Peter J. van der Most [aut],
Ahmad Vaez [aut],
Ilja M. Nolte [aut]
Maintainer: Alireza Ani <a.ani@umcg.nl>
Diff between GWASinspector versions 1.4.8 dated 2020-07-28 and 1.4.8.2 dated 2020-10-01
DESCRIPTION | 10 +- MD5 | 36 ++++----- R/aaa.R | 2 R/checkConfigFile.R | 25 ++++-- R/compare_GWASs.R | 9 +- R/loggerFunctions.R | 3 R/multiStudyPlots.R | 93 ++++++++++++++++++++---- R/processColumns.R | 31 ++++++++ R/reportRelatedFunctions.R | 15 +-- R/run_inspector.R | 4 - R/saveFilesFunctions.R | 5 + R/studyFunctions.R | 53 +++++++------ R/suppFunctions.R | 14 +-- R/validate.R | 51 +++++++++++-- R/zzz.R | 170 ++++++++++++++++++++++---------------------- inst/doc/GWASinspector.html | 4 - inst/extdata/config.ini | 12 ++- man/GWASinspector.Rd | 1 man/manhattan.plot.Rd | 18 +++- 19 files changed, 369 insertions(+), 187 deletions(-)
Title: Parsing Command-Line Arguments and Simple Variable Interpolation
Description: This is a command-line argument parser which wraps the
powerful Perl module Getopt::Long and with some adaptations for easier use
in R. It also provides a simple way for variable interpolation in R.
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu@dkfz.de>
Diff between GetoptLong versions 1.0.2 dated 2020-07-06 and 1.0.3 dated 2020-10-01
DESCRIPTION | 10 +++++----- MD5 | 20 ++++++++++---------- NEWS | 6 ++++++ R/0_global.R | 2 +- R/get_options.R | 33 +++++++++++++++++++++++++++++++++ build/vignette.rds |binary inst/doc/GetoptLong.html | 28 ++++++++++++++-------------- inst/doc/variable_interpolation.html | 18 +++++++++--------- man/GetoptLong.options.Rd | 2 +- tests/testthat/test_GetoptLong.R | 4 ++++ vignettes/GetoptLong.Rmd2 | 6 +++--- 11 files changed, 86 insertions(+), 43 deletions(-)
Title: Work with Open Road Traffic Casualty Data from Great Britain
Description: Tools to help download, process and analyse the UK road collision data collected using the
'STATS19' form. The data are provided as 'CSV' files with detailed road safety data about the
circumstances of car crashes and other incidents on the roads resulting in
casualties in Great Britain from 1979, the types
(including make and model) of vehicles involved and the consequential casualties. The
statistics relate only to personal casualties on public roads that are reported
to the police, and subsequently recorded, using the 'STATS19' accident reporting form. See
the Department for Transport website
<https://data.gov.uk/dataset/cb7ae6f0-4be6-4935-9277-47e5ce24a11f/road-safety-data> for more
information on these data.
Author: Robin Lovelace [aut, cre] (<https://orcid.org/0000-0001-5679-6536>),
Malcolm Morgan [aut] (<https://orcid.org/0000-0002-9488-9183>),
Layik Hama [aut] (<https://orcid.org/0000-0003-1912-4890>),
Mark Padgham [aut] (<https://orcid.org/0000-0003-2172-5265>),
David Ranzolin [rev],
Adam Sparks [rev, ctb] (<https://orcid.org/0000-0002-0061-8359>),
Ivo Wengraf [ctb],
RAC Foundation [fnd]
Maintainer: Robin Lovelace <rob00x@gmail.com>
Diff between stats19 versions 1.2.0 dated 2020-03-03 and 1.3.0 dated 2020-10-01
DESCRIPTION | 10 ++--- MD5 | 62 +++++++++++++++---------------- NEWS.md | 6 ++- R/get.R | 4 +- README.md | 10 ++--- build/vignette.rds |binary data/file_names.rda |binary data/file_names_old.rda |binary inst/doc/blog.Rmd | 4 +- inst/doc/blog.html | 30 +++++++++++---- inst/doc/stats19-training-setup.Rmd | 2 - inst/doc/stats19-training-setup.html | 18 ++++++++- inst/doc/stats19-training.Rmd | 28 +++++--------- inst/doc/stats19-training.html | 70 ++++++++++++++++++++--------------- inst/doc/stats19-vehicles.html | 18 ++++++++- inst/doc/stats19.Rmd | 4 +- inst/doc/stats19.html | 51 +++++++++++++++++-------- man/accidents_sample.Rd | 4 +- man/casualties_sample.Rd | 4 +- man/file_names.Rd | 4 +- man/get_stats19.Rd | 4 +- man/police_boundaries.Rd | 4 +- man/schema_original.Rd | 4 +- man/vehicles_sample.Rd | 4 +- tests/testthat/test-format.R | 4 +- tests/testthat/test-get.R | 3 + tests/testthat/test-read_stats19.R | 4 ++ vignettes/blog.Rmd | 4 +- vignettes/blog.md | 4 +- vignettes/stats19-training-setup.Rmd | 2 - vignettes/stats19-training.Rmd | 28 +++++--------- vignettes/stats19.Rmd | 4 +- 32 files changed, 242 insertions(+), 156 deletions(-)
Title: Infrastructure for Ordering Objects Using Seriation
Description: Infrastructure for ordering objects with an implementation of several
seriation/sequencing/ordination techniques to reorder matrices, dissimilarity
matrices, and dendrograms. Also provides (optimally) reordered heatmaps,
color images and clustering visualizations like dissimilarity plots, and
visual assessment of cluster tendency plots (VAT and iVAT). Hahsler et al (2008) <doi:10.18637/jss.v025.i03>.
Author: Michael Hahsler [aut, cre, cph],
Christian Buchta [aut, cph],
Kurt Hornik [aut, cph],
Fionn Murtagh [ctb, cph],
Michael Brusco [ctb, cph],
Stephanie Stahl [ctb, cph],
Hans-Friedrich Koehn [ctb, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between seriation versions 1.2-8 dated 2019-08-27 and 1.2-9 dated 2020-10-01
DESCRIPTION | 14 - MD5 | 57 +++--- NAMESPACE | 17 - NEWS.md | 4 R/AAAinstalled.R | 2 R/AAAregistry.R | 2 R/VAT.R | 24 +- R/dissimilartiy.R | 4 R/hmap.R | 156 ++++++++--------- R/permutation.R | 24 +- R/permutation_vector.R | 40 ++-- R/seriate.R | 50 ++--- R/seriate_ARSA_Branch-Bound.R | 2 R/seriate_SA.R | 10 - README.md | 19 +- build/partial.rdb |only build/vignette.rds |binary inst/CITATION | 3 inst/doc/seriation.R | 1 inst/doc/seriation.pdf |binary man/Chameleon.Rd | 18 - man/Zoo.Rd | 2 man/criterion.Rd | 21 +- man/dissimilarity.Rd | 3 man/dissplot.Rd | 35 ++- man/pimage.Rd | 10 - man/register_GA.Rd | 2 man/seriate.Rd | 385 ++++++++++++++++++++---------------------- man/seriation_methods.Rd | 5 man/uniscale.Rd | 1 30 files changed, 474 insertions(+), 437 deletions(-)
Title: Light Gradient Boosting Machine
Description: Tree based algorithms can be improved by introducing boosting frameworks.
'LightGBM' is one such framework, based on Ke, Guolin et al. (2017) <https://papers.nips.cc/paper/6907-lightgbm-a-highly-efficient-gradient-boosting-decision>.
This package offers an R interface to work with it.
It is designed to be distributed and efficient with the following advantages:
1. Faster training speed and higher efficiency.
2. Lower memory usage.
3. Better accuracy.
4. Parallel learning supported.
5. Capable of handling large-scale data.
In recognition of these advantages, 'LightGBM' has been widely-used in many winning solutions of machine learning competitions.
Comparison experiments on public datasets suggest that 'LightGBM' can outperform existing boosting frameworks on both efficiency and accuracy, with significantly lower memory consumption. In addition, parallel experiments suggest that in certain circumstances, 'LightGBM' can achieve a linear speed-up in training time by using multiple machines.
Author: Guolin Ke [aut, cre],
Damien Soukhavong [aut],
James Lamb [aut],
Qi Meng [aut],
Thomas Finley [aut],
Taifeng Wang [aut],
Wei Chen [aut],
Weidong Ma [aut],
Qiwei Ye [aut],
Tie-Yan Liu [aut],
Yachen Yan [ctb],
Microsoft Corporation [cph],
Dropbox, Inc. [cph],
Jay Loden [cph],
Dave Daeschler [cph],
Giampaolo Rodola [cph],
IBM Corporation [ctb]
Maintainer: Guolin Ke <guolin.ke@microsoft.com>
Diff between lightgbm versions 3.0.0 dated 2020-09-21 and 3.0.0.2 dated 2020-10-01
DESCRIPTION | 24 +++++++---- MD5 | 76 +++++++++++++++++------------------ R/callback.R | 10 ---- R/lgb.Booster.R | 14 ------ R/lgb.Dataset.R | 11 ----- R/lgb.Predictor.R | 7 --- R/lgb.cv.R | 16 ++----- R/lgb.importance.R | 1 R/lgb.interprete.R | 3 - R/lgb.model.dt.tree.R | 2 R/lgb.plot.importance.R | 2 R/lgb.plot.interpretation.R | 1 R/lgb.train.R | 7 +-- R/lightgbm.R | 4 - R/readRDS.lgb.Booster.R | 1 R/removed.R | 4 - R/saveRDS.lgb.Booster.R | 3 - R/utils.R | 12 ----- configure | 29 +++++++++---- configure.ac | 13 +++++ man/lgb.prepare.Rd | 2 man/lgb.prepare2.Rd | 2 man/lgb_shared_params.Rd | 3 - man/lightgbm.Rd | 3 - src/Makevars.in | 1 src/Makevars.win.in | 1 src/boosting/gbdt.cpp | 3 - src/include/LightGBM/feature_group.h | 16 ++++--- src/include/LightGBM/utils/file_io.h | 19 ++++++++ src/io/bin.cpp | 57 ++++++++++++++------------ src/io/dataset.cpp | 72 +++++++++++++++++++-------------- src/io/dataset_loader.cpp | 61 +++++++++++++++++----------- src/io/dense_bin.hpp | 6 +- src/io/metadata.cpp | 38 +++++++++-------- src/io/sparse_bin.hpp | 15 +++--- src/network/ifaddrs_patch.cpp |only src/network/ifaddrs_patch.h |only src/network/socket_wrapper.hpp | 8 +++ tests/testthat/test_basic.R | 2 tests/testthat/test_metrics.R | 2 40 files changed, 293 insertions(+), 258 deletions(-)
Title: Infer Constant and Stochastic, Time-Dependent Model Parameters
Description: Infer constant and stochastic, time-dependent parameters to consider intrinsic stochasticity of a dynamic model and/or to analyze model structure modifications that could reduce model deficits.
The concept is based on inferring time-dependent parameters as stochastic processes in the form of Ornstein-Uhlenbeck processes jointly with inferring constant model parameters and parameters of the Ornstein-Uhlenbeck processes.
The package also contains functions to sample from and calculate densities of Ornstein-Uhlenbeck processes.
References:
Tomassini, L., Reichert, P., Kuensch, H.-R. Buser, C., Knutti, R. and Borsuk, M.E. (2009) "A smoothing algorithm for estimating stochastic, continuous-time model parameters and its application to a simple climate model." Journal of the Royal Statistical Society: Series C (Applied Statistics) 58, 679-704, <doi:10.1111/j.1467-9876.2009.00678.x>;
Reichert, P., and Mieleitner, J. (2009) "Analyzing input and structural uncertainty of nonlinear dynamic models with stochastic, time-dependent parameters." Water Resources Research, 45, W10402, <doi:10.1029/2009WR007814>;
Reichert, P., Ammann, L. and Fenicia, F. (2020) "Potential and challenges of investigating intrinsic uncertainty of hydrological models with stochastic, time-dependent parameters", in preparation;
Reichert, P. (2020) "timedeppar: An R package for inferring stochastic, time-dependent model parameters", in preparation.
Author: Peter Reichert <peter.reichert@eawag.ch>
Maintainer: Peter Reichert <peter.reichert@eawag.ch>
Diff between timedeppar versions 1.0 dated 2020-07-08 and 1.0.1 dated 2020-10-01
DESCRIPTION | 12 ++++++------ MD5 | 11 ++++++----- R/infer.timedeppar.R | 48 ++++++++++++++++++++++++++++++++++-------------- R/plot.timedeppar.R | 3 ++- inst |only man/infer.timedeppar.Rd | 21 ++++++++++++++++----- man/plot.timedeppar.Rd | 3 ++- 7 files changed, 66 insertions(+), 32 deletions(-)
Title: Automatic Calculation of Effects for Piecewise Structural
Equation Models
Description: Provides functionality to automatically calculate direct, indirect,
and total effects for piecewise structural equation models, comprising lists
of fitted models representing structured equations (Lefcheck 2016
<doi:10/f8s8rb>). Confidence intervals are provided via bootstrapping.
Author: Mark Murphy [aut, cre]
Maintainer: Mark Murphy <murphymv@gmail.com>
Diff between semEff versions 0.3.0 dated 2020-03-25 and 0.4.0 dated 2020-10-01
semEff-0.3.0/semEff/R/boot_fun.R |only semEff-0.3.0/semEff/R/helper_fun.R |only semEff-0.3.0/semEff/R/sem_eff_fun.R |only semEff-0.3.0/semEff/R/std_coeff_fun.R |only semEff-0.3.0/semEff/data/datalist |only semEff-0.3.0/semEff/man/figures/README-pressure-1.png |only semEff-0.4.0/semEff/DESCRIPTION | 13 semEff-0.4.0/semEff/MD5 | 73 +-- semEff-0.4.0/semEff/NAMESPACE | 1 semEff-0.4.0/semEff/NEWS.md | 138 ++++-- semEff-0.4.0/semEff/R/bootEff-fun.R |only semEff-0.4.0/semEff/R/data.R | 49 -- semEff-0.4.0/semEff/R/helper-fun.R |only semEff-0.4.0/semEff/R/semEff-fun.R |only semEff-0.4.0/semEff/R/stdEff-fun.R |only semEff-0.4.0/semEff/README.md | 40 + semEff-0.4.0/semEff/inst/WORDLIST | 26 - semEff-0.4.0/semEff/man/Object.Type.Rd | 2 semEff-0.4.0/semEff/man/Param.Type.Rd | 14 semEff-0.4.0/semEff/man/R2.Rd | 81 ++- semEff-0.4.0/semEff/man/Shipley.Growth.Rd | 16 semEff-0.4.0/semEff/man/Shipley.SEM.Boot.Rd | 7 semEff-0.4.0/semEff/man/Shipley.SEM.Eff.Rd | 6 semEff-0.4.0/semEff/man/Shipley.SEM.Rd | 20 semEff-0.4.0/semEff/man/VIF.Rd | 20 semEff-0.4.0/semEff/man/avgEst.Rd | 26 - semEff-0.4.0/semEff/man/bootCI.Rd | 19 semEff-0.4.0/semEff/man/bootEff.Rd | 52 -- semEff-0.4.0/semEff/man/getData.Rd | 9 semEff-0.4.0/semEff/man/getEff.Rd | 2 semEff-0.4.0/semEff/man/getY.Rd | 16 semEff-0.4.0/semEff/man/glt.Rd | 117 ++--- semEff-0.4.0/semEff/man/pSapply.Rd | 2 semEff-0.4.0/semEff/man/predEff.Rd | 396 ++++++++---------- semEff-0.4.0/semEff/man/print.semEff.Rd | 2 semEff-0.4.0/semEff/man/rMapply.Rd | 4 semEff-0.4.0/semEff/man/sdW.Rd | 2 semEff-0.4.0/semEff/man/semEff-package.Rd | 4 semEff-0.4.0/semEff/man/semEff.Rd | 27 - semEff-0.4.0/semEff/man/stdCoeff.Rd | 199 --------- semEff-0.4.0/semEff/man/stdEff.Rd |only semEff-0.4.0/semEff/man/varW.Rd | 6 semEff-0.4.0/semEff/man/xNam.Rd | 19 43 files changed, 620 insertions(+), 788 deletions(-)
Title: The Self-Controlled Case Series Method
Description: Various self-controlled case series models used to investigate
associations between time-varying exposures such as vaccines or
other drugs or non drug exposures and an adverse event can be
fitted. Detailed information on the self-controlled case series
method and its extensions with more examples can be found in
Farrington, P., Whitaker, H., and Ghebremichael Weldeselassie, Y.
(2018, ISBN: 978-1-4987-8159-6. Self-controlled Case Series studies:
A modelling Guide with R. Boca Raton: Chapman & Hall/CRC Press)
and <https://sccs-studies.info>.
Author: Yonas Ghebremichael Weldeselassie, Heather Whitaker, Paddy Farrington
Maintainer: "Yonas Ghebremichael-Weldeselassie" <y.weldeselassie@warwick.ac.uk>
Diff between SCCS versions 1.1 dated 2019-06-04 and 1.2 dated 2020-10-01
SCCS-1.1/SCCS/data/addat.txt.gz |only SCCS-1.1/SCCS/data/adidat.txt.gz |only SCCS-1.1/SCCS/data/amdat.txt.gz |only SCCS-1.1/SCCS/data/apdat.txt.gz |only SCCS-1.1/SCCS/data/autdat.txt.gz |only SCCS-1.1/SCCS/data/bpdat.txt.gz |only SCCS-1.1/SCCS/data/bupdat.txt.gz |only SCCS-1.1/SCCS/data/condat.txt.gz |only SCCS-1.1/SCCS/data/datalist |only SCCS-1.1/SCCS/data/dtpdat.txt.gz |only SCCS-1.1/SCCS/data/febdat.txt.gz |only SCCS-1.1/SCCS/data/gbsdat.txt.gz |only SCCS-1.1/SCCS/data/gidat.txt.gz |only SCCS-1.1/SCCS/data/hibdat.txt.gz |only SCCS-1.1/SCCS/data/hipdat.txt.gz |only SCCS-1.1/SCCS/data/intdat.txt.gz |only SCCS-1.1/SCCS/data/itpdat.txt.gz |only SCCS-1.1/SCCS/data/midat.txt.gz |only SCCS-1.1/SCCS/data/nrtdat.txt.gz |only SCCS-1.1/SCCS/data/opvdat.txt.gz |only SCCS-1.1/SCCS/data/pmdat.txt.gz |only SCCS-1.1/SCCS/data/rotdat.txt.gz |only SCCS-1.1/SCCS/data/rsvdat.txt.gz |only SCCS-1.1/SCCS/data/siddat.txt.gz |only SCCS-1.2/SCCS/DESCRIPTION | 8 +-- SCCS-1.2/SCCS/MD5 | 89 ++++++++++++++++++------------------- SCCS-1.2/SCCS/R/Yproduct.R | 3 - SCCS-1.2/SCCS/R/adrug_matrix.R | 3 - SCCS-1.2/SCCS/R/dmsplinedesign.R | 3 - SCCS-1.2/SCCS/R/eventdepenobs.R | 16 ++---- SCCS-1.2/SCCS/R/formatdata.R | 3 - SCCS-1.2/SCCS/R/ispline.R | 3 - SCCS-1.2/SCCS/R/ispline1.R | 3 - SCCS-1.2/SCCS/R/ispline2.R | 3 - SCCS-1.2/SCCS/R/ispline3.R | 3 - SCCS-1.2/SCCS/R/lrtsccs.R | 3 - SCCS-1.2/SCCS/R/max_expo.R | 3 - SCCS-1.2/SCCS/R/msplinedesign.R | 3 - SCCS-1.2/SCCS/R/nonparasccs.R | 7 +- SCCS-1.2/SCCS/R/quantsccs.R | 3 - SCCS-1.2/SCCS/R/semisccs.R | 3 - SCCS-1.2/SCCS/R/simulatesccsdata.R | 15 ++---- SCCS-1.2/SCCS/R/smoothagesccs.R | 5 -- SCCS-1.2/SCCS/R/smoothexposccs.R | 5 -- SCCS-1.2/SCCS/R/standardsccs.R | 3 - SCCS-1.2/SCCS/data/addat.txt |only SCCS-1.2/SCCS/data/adidat.txt |only SCCS-1.2/SCCS/data/amdat.txt |only SCCS-1.2/SCCS/data/apdat.txt |only SCCS-1.2/SCCS/data/autdat.txt |only SCCS-1.2/SCCS/data/bpdat.txt |only SCCS-1.2/SCCS/data/bupdat.txt |only SCCS-1.2/SCCS/data/condat.txt |only SCCS-1.2/SCCS/data/dtpdat.txt |only SCCS-1.2/SCCS/data/febdat.txt |only SCCS-1.2/SCCS/data/gbsdat.txt |only SCCS-1.2/SCCS/data/gidat.txt |only SCCS-1.2/SCCS/data/hibdat.txt |only SCCS-1.2/SCCS/data/hipdat.txt |only SCCS-1.2/SCCS/data/intdat.txt |only SCCS-1.2/SCCS/data/itpdat.txt |only SCCS-1.2/SCCS/data/midat.txt |only SCCS-1.2/SCCS/data/nrtdat.txt |only SCCS-1.2/SCCS/data/opvdat.txt |only SCCS-1.2/SCCS/data/pmdat.txt |only SCCS-1.2/SCCS/data/rotdat.txt |only SCCS-1.2/SCCS/data/rsvdat.txt |only SCCS-1.2/SCCS/data/siddat.txt |only SCCS-1.2/SCCS/man/SCCS-package.Rd | 2 69 files changed, 80 insertions(+), 109 deletions(-)
Title: Accessing and Processing a 'Mega2' Genetic Database
Description: Uses as input genetic data that have been reformatted and
stored in a 'SQLite' database; this database is initially created
by the standalone 'mega2' C++ program (available freely from
<https://watson.hgen.pitt.edu/register/>). Loads and manipulates
data frames containing genotype, phenotype, and family
information from the input 'SQLite' database, and decompresses
needed subsets of the genotype data, on the fly, in a memory
efficient manner. We have also created several more functions
that illustrate how to use the data frames as well as perform
useful tasks: these permit one to run the 'pedgene' package to
carry out gene-based association tests on family data using
selected marker subsets, to run the 'SKAT' package to carry out
gene-based association tests using selected marker subsets, to
run the 'famSKATRC' package to carry out gene-based association
tests on families (optionally) and with rare or common variants
using selected marker subsets, to output the 'Mega2R' data as a
VCF file and related files (for phenotype and family data), and
to convert the data frames into CoreArray Genomic Data Structure
(GDS) format.
Author: Robert V. Baron [aut],
Daniel E. Weeks [aut, cre],
University of Pittsburgh [cph]
Maintainer: Daniel E. Weeks <weeks@pitt.edu>
Diff between Mega2R versions 1.0.7 dated 2020-05-19 and 1.0.8 dated 2020-10-01
DESCRIPTION | 8 MD5 | 16 NEWS.md | 8 R/mega2genabelexternal.R | 4 R/mega2rcreate.R | 22 - build/vignette.rds |binary inst/doc/mega2rtutorial.Rmd | 26 - inst/doc/mega2rtutorial.html | 896 +++++++++++++++++++++---------------------- vignettes/mega2rtutorial.Rmd | 26 - 9 files changed, 520 insertions(+), 486 deletions(-)
Title: A C++11 Interface for R's C Interface
Description: Provides a header only, C++11 interface to R's C
interface. Compared to other approaches 'cpp11' strives to be safe
against long jumps from the C API as well as C++ exceptions, conform
to normal R function semantics and supports interaction with 'ALTREP'
vectors.
Author: Jim Hester [aut, cre] (<https://orcid.org/0000-0002-2739-7082>),
Romain François [ctb],
Benjamin Kietzman [ctb],
RStudio [cph, fnd]
Maintainer: Jim Hester <jim.hester@rstudio.com>
Diff between cpp11 versions 0.2.1 dated 2020-08-11 and 0.2.2 dated 2020-10-01
DESCRIPTION | 8 MD5 | 71 +-- NEWS.md | 10 R/register.R | 19 - README.md | 2 build/vignette.rds |binary inst/doc/converting.Rmd | 65 ++- inst/doc/converting.html | 50 ++ inst/doc/cpp11.R | 344 +++++++++--------- inst/doc/cpp11.Rmd | 8 inst/doc/cpp11.html | 608 ++++++++++++++------------------ inst/doc/internals.Rmd | 6 inst/doc/internals.html | 4 inst/doc/motivations.R | 108 ++--- inst/doc/motivations.Rmd | 6 inst/doc/motivations.html | 367 ------------------- inst/include/cpp11.hpp | 1 inst/include/cpp11/R.hpp | 26 - inst/include/cpp11/as.hpp | 25 + inst/include/cpp11/doubles.hpp | 8 inst/include/cpp11/external_pointer.hpp | 3 inst/include/cpp11/integers.hpp | 10 inst/include/cpp11/list.hpp | 12 inst/include/cpp11/logicals.hpp | 61 +-- inst/include/cpp11/matrix.hpp | 7 inst/include/cpp11/protect.hpp | 403 ++++++++++++--------- inst/include/cpp11/r_bool.hpp |only inst/include/cpp11/r_vector.hpp | 53 +- inst/include/cpp11/raws.hpp | 12 inst/include/cpp11/sexp.hpp | 26 - inst/include/cpp11/strings.hpp | 14 tests/testthat/test-register.R | 42 ++ tests/testthat/test-source.R | 4 vignettes/converting.Rmd | 65 ++- vignettes/cpp11.Rmd | 8 vignettes/internals.Rmd | 6 vignettes/motivations.Rmd | 6 37 files changed, 1175 insertions(+), 1293 deletions(-)
Title: Hidden Markov Models of Character Evolution
Description: Fits hidden Markov models of discrete character evolution which allow different transition rate classes on different portions of a phylogeny. Beaulieu et al (2013) <doi:10.1093/sysbio/syt034>.
Author: Jeremy Beaulieu [aut, cre],
Brian O'Meara [aut],
Jeffrey Oliver [aut],
James Boyko [aut]
Maintainer: Jeremy Beaulieu <jmbeauli@uark.edu>
Diff between corHMM versions 2.3 dated 2020-08-05 and 2.4 dated 2020-10-01
DESCRIPTION | 10 +-- MD5 | 18 +++--- R/corHMM.R | 6 +- R/makeSimmap.R | 58 ++++++++++++++++++++ R/rate.mat.maker.R | 24 +++++--- inst/doc/corHMMv2.1-vignette.Rmd | 1 inst/doc/corHMMv2.1-vignette.pdf |binary man/getRateMat4Dat.Rd | 5 + vignettes/corHMMv2.1-vignette.Rmd | 1 vignettes/corHMMv2.1-vignette.html | 103 ++++++++++++++++++++----------------- 10 files changed, 154 insertions(+), 72 deletions(-)
Title: Arena for the Exploration and Comparison of any ML Models
Description: Generates data for challenging machine learning models in 'Arena'
<https://arena.drwhy.ai> - an interactive web application. You can start
the server with XAI (Explainable Artificial Intelligence) plots to be
generated on-demand or precalculate and auto-upload data file beside
shareable 'Arena' URL.
Author: Piotr Piątyszek [aut, cre],
Przemyslaw Biecek [aut] (<https://orcid.org/0000-0001-8423-1823>)
Maintainer: Piotr Piątyszek <piotrp@wektor.xyz>
Diff between arenar versions 0.1.8 dated 2020-07-27 and 0.2.0 dated 2020-10-01
arenar-0.1.8/arenar/R/funnel_measure.R |only arenar-0.1.8/arenar/man/funnel_measure.Rd |only arenar-0.2.0/arenar/DESCRIPTION | 11 arenar-0.2.0/arenar/MD5 | 51 + arenar-0.2.0/arenar/NAMESPACE | 4 arenar-0.2.0/arenar/NEWS.md | 15 arenar-0.2.0/arenar/R/arena.R | 180 +++-- arenar-0.2.0/arenar/R/attributes.R |only arenar-0.2.0/arenar/R/live.R | 106 +++ arenar-0.2.0/arenar/R/plots.R | 413 +++++++++++-- arenar-0.2.0/arenar/R/print.R |only arenar-0.2.0/arenar/R/subsets_performance.R |only arenar-0.2.0/arenar/R/utlis.R | 100 ++- arenar-0.2.0/arenar/man/calculate_subsets_performance.Rd |only arenar-0.2.0/arenar/man/create_arena.Rd | 15 arenar-0.2.0/arenar/man/get_attributes.Rd |only arenar-0.2.0/arenar/man/get_dataset_attributes.Rd |only arenar-0.2.0/arenar/man/get_dataset_plots.Rd |only arenar-0.2.0/arenar/man/get_datasets_list.Rd |only arenar-0.2.0/arenar/man/get_fairness.Rd |only arenar-0.2.0/arenar/man/get_feature_importance.Rd | 4 arenar-0.2.0/arenar/man/get_message_output.Rd |only arenar-0.2.0/arenar/man/get_model_attributes.Rd |only arenar-0.2.0/arenar/man/get_observation_attributes.Rd |only arenar-0.2.0/arenar/man/get_subsets_performance.Rd |only arenar-0.2.0/arenar/man/get_variable_against_another.Rd |only arenar-0.2.0/arenar/man/get_variable_attributes.Rd |only arenar-0.2.0/arenar/man/get_variable_distribution.Rd |only arenar-0.2.0/arenar/man/get_variables_list.Rd | 4 arenar-0.2.0/arenar/man/print.arena_live.Rd | 2 arenar-0.2.0/arenar/man/print.arena_static.Rd | 2 arenar-0.2.0/arenar/man/push_dataset.Rd |only arenar-0.2.0/arenar/man/save_arena.Rd |only arenar-0.2.0/arenar/man/truncate_vector.Rd |only arenar-0.2.0/arenar/man/validate_new_dataset.Rd |only arenar-0.2.0/arenar/tests/testthat/test_eda.R |only arenar-0.2.0/arenar/tests/testthat/test_plots_count.R | 28 arenar-0.2.0/arenar/tests/testthat/test_split_multiclass.R | 15 38 files changed, 781 insertions(+), 169 deletions(-)
Title: Load Data from Facebook API Marketing
Description: Load data by campaigns, ads, ad sets and insights, ad account and business manager
from Facebook Marketing API into R. For more details see official documents by Facebook
Marketing API <https://developers.facebook.com/docs/marketing-apis/>.
Author: Alexey Seleznev [aut, cre] (<https://orcid.org/0000-0003-0410-7385>)
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between rfacebookstat versions 2.1.7 dated 2020-08-27 and 2.1.9 dated 2020-10-01
DESCRIPTION | 8 - MD5 | 28 ++-- NEWS.md | 16 ++ R/authorization.R | 3 R/fbAPILimitCheck.R | 114 ++++++++-------- R/fbGetAdAccounts.R | 2 R/fbGetAdCreative.R | 2 R/fbGetCampaigns.R | 6 R/fbGetMarketingStat.R | 202 +++++++++++++++++------------ build/partial.rdb |binary inst/doc/rfacebookstat-cost-data.html | 4 inst/doc/rfacebookstat-get-statistics.Rmd | 4 inst/doc/rfacebookstat-get-statistics.html | 8 - man/fbGetMarketingStat.Rd | 8 - vignettes/rfacebookstat-get-statistics.Rmd | 4 15 files changed, 242 insertions(+), 167 deletions(-)
Title: Small Area Estimation with Measurement Error
Description: A set of functions and datasets implementation of small area estimation when auxiliary variable is measured with error. These functions provide a empirical best linear unbiased prediction (EBLUP) estimator and mean squared error (MSE) estimator of the EBLUP. These models were developed by Ybarra and Lohr (2008) <doi:10.1093/biomet/asn048>.
Author: Muhammad Rifqi Mubarak [aut, cre],
Azka Ubaidillah [aut]
Maintainer: Muhammad Rifqi Mubarak <16.9304@stis.ac.id>
Diff between saeME versions 1.2.1 dated 2020-09-03 and 1.2.2 dated 2020-10-01
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/FHme_nonsamples.R | 10 ++++------ R/mse_FHme.R | 4 +--- man/FHme_nonsamples.Rd | 4 ++-- man/mse_FHme.Rd | 1 - 6 files changed, 15 insertions(+), 20 deletions(-)
Title: Nonparametric Bootstrap and Permutation Tests
Description: Robust nonparametric bootstrap and permutation tests for location, correlation, and regression problems, as described in Helwig (2019a) <doi:10.1002/wics.1457> and Helwig (2019b) <doi:10.1016/j.neuroimage.2019.116030>. Univariate and multivariate tests are supported. For each problem, exact tests and Monte Carlo approximations are available. Five different nonparametric bootstrap confidence intervals are implemented. Parallel computing is implemented via the 'parallel' package.
Author: Nathaniel E. Helwig <helwig@umn.edu>
Maintainer: Nathaniel E. Helwig <helwig@umn.edu>
Diff between nptest versions 1.0-1 dated 2020-09-11 and 1.0-2 dated 2020-10-01
ChangeLog | 13 +++++++++++++ DESCRIPTION | 12 ++++++------ MD5 | 15 +++++++++------ NAMESPACE | 3 ++- R/np.boot.R |only R/print.np.boot.R |only build/partial.rdb |binary man/np.boot.Rd |only man/nptest-internal.Rd | 1 + man/nptest-package.Rd | 7 +++++++ 10 files changed, 38 insertions(+), 13 deletions(-)
Title: Statistics and Metrics for Seismic Data
Description: Classes and functions for metrics calculation as part of the
'IRIS DMC MUSTANG' project. The functionality in this package
builds upon the base classes of the 'IRISSeismic' package.
Metrics include basic statistics as well as higher level
'health' metrics that can help identify problematic seismometers.
Author: Jonathan Callahan [aut],
Rob Casey [aut],
Mary Templeton [aut],
Gillian Sharer [aut, cre]
Maintainer: Gillian Sharer <gillian@iris.washington.edu>
Diff between IRISMustangMetrics versions 2.4.1 dated 2020-07-27 and 2.4.2 dated 2020-10-01
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/ISPAQUtils.R | 6 +++--- R/transferFunctionMetric.R | 9 +++++++-- man/IRISMustangMetrics-package.Rd | 6 +++++- man/STALTAMetric.Rd | 4 ++-- man/transferFunctionMetric.Rd | 18 +++++------------- 7 files changed, 31 insertions(+), 30 deletions(-)
More information about IRISMustangMetrics at CRAN
Permanent link
Title: EMF Graphics Output Device
Description: Output graphics to EMF+/EMF.
Author: Philip Johnson
Maintainer: Philip Johnson <plfj@umd.edu>
Diff between devEMF versions 4.0-1 dated 2020-09-02 and 4.0-2 dated 2020-10-01
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS | 4 ++++ man/emf.Rd | 5 +++-- src/devEMF.cpp | 21 +++++++++++++-------- src/emf+.h | 23 +++++++++++++++++++---- src/fontmetrics.h | 2 ++ 7 files changed, 51 insertions(+), 24 deletions(-)
Title: Tools to Match Financial Portfolios with Climate Data
Description: These tools implement in R a fundamental part of
the software 'PACTA' (Paris Agreement Capital Transition Assessment),
which is a free tool that calculates the alignment between financial
portfolios and climate scenarios (<https://2degrees-investing.org/>).
Financial institutions use 'PACTA' to study how their capital
allocation impacts the climate. This package matches data from
financial portfolios to asset level data from market-intelligence
databases (e.g. power plant capacities, emission factors, etc.). This
is the first step to assess if a financial portfolio aligns with
climate goals.
Author: Mauro Lepore [aut, cre, ctr] (<https://orcid.org/0000-0002-1986-7988>),
Jackson Hoffart [aut] (<https://orcid.org/0000-0002-8600-5042>),
Klaus Hagedorn [aut],
Florence Palandri [aut],
Evgeny Petrovsky [aut],
2 Degrees Investing Initiative [cph, fnd]
Maintainer: Mauro Lepore <maurolepore@gmail.com>
Diff between r2dii.match versions 0.0.5 dated 2020-09-11 and 0.0.6 dated 2020-10-01
DESCRIPTION | 6 - MD5 | 17 ++-- NEWS.md | 5 + R/match_name.R | 11 ++- R/prioritize.R | 6 + README.md | 82 ++++++------------------ tests/spelling.R | 4 - tests/testthat/helper-on_rhub_with_ubuntu_gcc.R |only tests/testthat/test-match_name.R | 5 - tests/testthat/test-prioritize.R | 11 +++ 10 files changed, 71 insertions(+), 76 deletions(-)