Title: Computes Credible Intervals for Bayesian Wavelet Shrinkage
Description: Computes Bayesian wavelet shrinkage credible intervals for
nonparametric regression.
The method uses cumulants to derive Bayesian credible intervals for
wavelet regression estimates.
The first four cumulants of the posterior distribution of the
estimates are expressed in terms of the observed data and integer
powers of the mother wavelet functions.
These powers are closely approximated by linear combinations of
wavelet scaling functions at an appropriate finer scale.
Hence, a suitable modification of the discrete wavelet transform allows
the posterior cumulants to be found efficiently for any data set.
Johnson transformations then yield the credible intervals themselves.
Barber, S., Nason, G.P. and Silverman, B.W. (2002)
<doi:10.1111/1467-9868.00332>.
Author: Stuart Barber [aut],
Guy Nason [cre, ctb]
Maintainer: Guy Nason <g.nason@imperial.ac.uk>
Diff between waveband versions 4.7 dated 2018-04-13 and 4.7.1 dated 2020-10-15
DESCRIPTION | 12 ++++++------ MD5 | 7 ++++--- R/WBfunctions.r | 2 +- inst/CHANGES | 4 ++++ src/functions.c |only 5 files changed, 15 insertions(+), 10 deletions(-)
Title: Clinical Trial Designs in 'rstan'
Description: A collection of clinical trial designs and methods, implemented in
'rstan' and R, including: the Continual Reassessment Method by O'Quigley et
al. (1990) <doi:10.2307/2531628>; EffTox by Thall & Cook (2004)
<doi:10.1111/j.0006-341X.2004.00218.x>; the two-parameter logistic method of
Neuenschwander, Branson & Sponer (2008) <doi:10.1002/sim.3230>; and the
Augmented Binary method by Wason & Seaman (2013) <doi:10.1002/sim.5867>; and
more. We provide functions to aid model-fitting and analysis.
The 'rstan' implementations may also serve as a cookbook to anyone looking
to extend or embellish these models. We hope that this package encourages
the use of Bayesian methods in clinical trials. There is a preponderance of
early phase trial designs because this is where Bayesian methods are used
most. If there is a method you would like implemented, please get in touch.
Author: Kristian Brock [aut, cre] (<https://orcid.org/0000-0002-3921-0166>),
Trustees of Columbia University [cph]
Maintainer: Kristian Brock <kristian.brock@gmail.com>
Diff between trialr versions 0.1.4 dated 2020-04-06 and 0.1.5 dated 2020-10-15
trialr-0.1.4/trialr/R/CRM.R |only trialr-0.1.4/trialr/inst/doc/BEBOP.R |only trialr-0.1.4/trialr/inst/doc/BEBOP.Rmd |only trialr-0.1.4/trialr/inst/doc/BEBOP.html |only trialr-0.1.4/trialr/inst/doc/CRM-pathways.R |only trialr-0.1.4/trialr/inst/doc/CRM-pathways.Rmd |only trialr-0.1.4/trialr/inst/doc/CRM-pathways.html |only trialr-0.1.4/trialr/inst/doc/CRM-visualisation.R |only trialr-0.1.4/trialr/inst/doc/CRM-visualisation.Rmd |only trialr-0.1.4/trialr/inst/doc/CRM-visualisation.html |only trialr-0.1.4/trialr/inst/doc/CRM.R |only trialr-0.1.4/trialr/inst/doc/CRM.Rmd |only trialr-0.1.4/trialr/inst/doc/CRM.html |only trialr-0.1.4/trialr/inst/doc/EffTox.R |only trialr-0.1.4/trialr/inst/doc/EffTox.Rmd |only trialr-0.1.4/trialr/inst/doc/EffTox.html |only trialr-0.1.4/trialr/inst/doc/HierarchicalBayesianResponse.R |only trialr-0.1.4/trialr/inst/doc/HierarchicalBayesianResponse.Rmd |only trialr-0.1.4/trialr/inst/doc/HierarchicalBayesianResponse.html |only trialr-0.1.4/trialr/inst/doc/LevyCaseStudy.R |only trialr-0.1.4/trialr/inst/doc/LevyCaseStudy.Rmd |only trialr-0.1.4/trialr/inst/doc/LevyCaseStudy.html |only trialr-0.1.4/trialr/inst/doc/TITE-CRM.R |only trialr-0.1.4/trialr/inst/doc/TITE-CRM.Rmd |only trialr-0.1.4/trialr/inst/doc/TITE-CRM.html |only trialr-0.1.4/trialr/vignettes/BEBOP.Rmd |only trialr-0.1.4/trialr/vignettes/CRM-pathways.Rmd |only trialr-0.1.4/trialr/vignettes/CRM-visualisation.Rmd |only trialr-0.1.4/trialr/vignettes/CRM.Rmd |only trialr-0.1.4/trialr/vignettes/EffTox.Rmd |only trialr-0.1.4/trialr/vignettes/EffTox_cache |only trialr-0.1.4/trialr/vignettes/EffTox_files |only trialr-0.1.4/trialr/vignettes/HierarchicalBayesianResponse.Rmd |only trialr-0.1.4/trialr/vignettes/LevyCaseStudy.Rmd |only trialr-0.1.4/trialr/vignettes/TITE-CRM.Rmd |only trialr-0.1.5/trialr/DESCRIPTION | 31 - trialr-0.1.5/trialr/MD5 | 162 ++++--- trialr-0.1.5/trialr/NAMESPACE | 6 trialr-0.1.5/trialr/NEWS.md | 6 trialr-0.1.5/trialr/R/crm_fit.R | 117 +++++ trialr-0.1.5/trialr/R/crm_params.R | 3 trialr-0.1.5/trialr/R/efftox_parameters_demo.R | 13 trialr-0.1.5/trialr/R/efftox_params.R | 46 -- trialr-0.1.5/trialr/R/efftox_priors.R |only trialr-0.1.5/trialr/R/get_efftox_priors.R |only trialr-0.1.5/trialr/R/nbg_fit.R |only trialr-0.1.5/trialr/R/peps2_get_data.R | 3 trialr-0.1.5/trialr/R/stan_crm.R | 7 trialr-0.1.5/trialr/R/stan_efftox.R | 137 ++++-- trialr-0.1.5/trialr/R/stan_efftox_demo.R | 16 trialr-0.1.5/trialr/R/stan_nbg.R |only trialr-0.1.5/trialr/R/trialr-package.R | 4 trialr-0.1.5/trialr/README.md | 205 ++++++---- trialr-0.1.5/trialr/build/vignette.rds |binary trialr-0.1.5/trialr/inst/doc/A200-CRM.R |only trialr-0.1.5/trialr/inst/doc/A200-CRM.Rmd |only trialr-0.1.5/trialr/inst/doc/A200-CRM.html |only trialr-0.1.5/trialr/inst/doc/A210-CRM-visualisation.R |only trialr-0.1.5/trialr/inst/doc/A210-CRM-visualisation.Rmd |only trialr-0.1.5/trialr/inst/doc/A210-CRM-visualisation.html |only trialr-0.1.5/trialr/inst/doc/A220-CRM-pathways.R |only trialr-0.1.5/trialr/inst/doc/A220-CRM-pathways.Rmd |only trialr-0.1.5/trialr/inst/doc/A220-CRM-pathways.html |only trialr-0.1.5/trialr/inst/doc/A250-LevyCaseStudy.R |only trialr-0.1.5/trialr/inst/doc/A250-LevyCaseStudy.Rmd |only trialr-0.1.5/trialr/inst/doc/A250-LevyCaseStudy.html |only trialr-0.1.5/trialr/inst/doc/A260-TITE-CRM.R |only trialr-0.1.5/trialr/inst/doc/A260-TITE-CRM.Rmd |only trialr-0.1.5/trialr/inst/doc/A260-TITE-CRM.html |only trialr-0.1.5/trialr/inst/doc/A300-NeuenschwanderBransonGsponer.R |only trialr-0.1.5/trialr/inst/doc/A300-NeuenschwanderBransonGsponer.Rmd |only trialr-0.1.5/trialr/inst/doc/A300-NeuenschwanderBransonGsponer.html |only trialr-0.1.5/trialr/inst/doc/A400-EffTox.R |only trialr-0.1.5/trialr/inst/doc/A400-EffTox.Rmd |only trialr-0.1.5/trialr/inst/doc/A400-EffTox.html |only trialr-0.1.5/trialr/inst/doc/A500-HierarchicalBayesianResponse.R |only trialr-0.1.5/trialr/inst/doc/A500-HierarchicalBayesianResponse.Rmd |only trialr-0.1.5/trialr/inst/doc/A500-HierarchicalBayesianResponse.html |only trialr-0.1.5/trialr/inst/doc/A600-BEBOP.R |only trialr-0.1.5/trialr/inst/doc/A600-BEBOP.Rmd |only trialr-0.1.5/trialr/inst/doc/A600-BEBOP.html |only trialr-0.1.5/trialr/man/as.data.frame.crm_fit.Rd | 2 trialr-0.1.5/trialr/man/as.mcmc.list.crm_fit.Rd | 2 trialr-0.1.5/trialr/man/efftox_params-class.Rd | 52 -- trialr-0.1.5/trialr/man/efftox_priors.Rd |only trialr-0.1.5/trialr/man/figures/README-unnamed-chunk-12-1.png |only trialr-0.1.5/trialr/man/figures/README-unnamed-chunk-15-1.png |only trialr-0.1.5/trialr/man/figures/README-unnamed-chunk-6-1.png |binary trialr-0.1.5/trialr/man/get_efftox_priors.Rd |only trialr-0.1.5/trialr/man/peps2_get_data.Rd | 3 trialr-0.1.5/trialr/man/plot.crm_fit.Rd | 2 trialr-0.1.5/trialr/man/print.crm_fit.Rd | 2 trialr-0.1.5/trialr/man/print.nbg_fit.Rd |only trialr-0.1.5/trialr/man/stan_crm.Rd | 4 trialr-0.1.5/trialr/man/stan_efftox.Rd | 155 ++++--- trialr-0.1.5/trialr/man/stan_nbg.Rd |only trialr-0.1.5/trialr/man/summary.crm_fit.Rd | 2 trialr-0.1.5/trialr/man/trialr-package.Rd | 4 trialr-0.1.5/trialr/src/stan_files/CrmTwoParamLogisticNormalPrior.stan | 9 trialr-0.1.5/trialr/src/stan_files/NeuenschwanderTwoParamLogit.stan |only trialr-0.1.5/trialr/tests/testthat/test_crm_dtps.R | 6 trialr-0.1.5/trialr/tests/testthat/test_efftox_dtps.R | 14 trialr-0.1.5/trialr/tests/testthat/test_efftox_utility_density_plot.R | 4 trialr-0.1.5/trialr/tests/testthat/test_get_efftox_priors.R |only trialr-0.1.5/trialr/tests/testthat/test_hierarchical.R | 3 trialr-0.1.5/trialr/tests/testthat/test_peps2.R | 6 trialr-0.1.5/trialr/tests/testthat/test_spread_paths.R | 3 trialr-0.1.5/trialr/tests/testthat/test_stan_crm.R | 59 +- trialr-0.1.5/trialr/tests/testthat/test_stan_efftox.R | 16 trialr-0.1.5/trialr/tests/testthat/test_stan_nbg.R |only trialr-0.1.5/trialr/vignettes/A200-CRM.Rmd |only trialr-0.1.5/trialr/vignettes/A210-CRM-visualisation.Rmd |only trialr-0.1.5/trialr/vignettes/A220-CRM-pathways.Rmd |only trialr-0.1.5/trialr/vignettes/A250-LevyCaseStudy.Rmd |only trialr-0.1.5/trialr/vignettes/A260-TITE-CRM.Rmd |only trialr-0.1.5/trialr/vignettes/A300-NeuenschwanderBransonGsponer.Rmd |only trialr-0.1.5/trialr/vignettes/A400-EffTox.Rmd |only trialr-0.1.5/trialr/vignettes/A400-EffTox_cache |only trialr-0.1.5/trialr/vignettes/A400-EffTox_files |only trialr-0.1.5/trialr/vignettes/A500-HierarchicalBayesianResponse.Rmd |only trialr-0.1.5/trialr/vignettes/A600-BEBOP.Rmd |only 121 files changed, 681 insertions(+), 423 deletions(-)
Title: Interface to 'Azure Queue Storage'
Description: An interface to 'Azure Queue Storage'. This is a cloud service for storing large numbers of messages, for example from automated sensors, that can be accessed remotely via authenticated calls using HTTP or HTTPS. Queue storage is often used to create a backlog of work to process asynchronously. Part of the 'AzureR' family of packages.
Author: Hong Ooi [aut, cre],
Microsoft [cph]
Maintainer: Hong Ooi <hongooi73@gmail.com>
Diff between AzureQstor versions 1.0.0 dated 2020-06-02 and 1.0.1 dated 2020-10-15
DESCRIPTION | 12 ++++++------ MD5 | 17 +++++++++-------- NEWS.md |only README.md | 4 ++-- build/vignette.rds |binary inst/doc/intro.Rmd | 2 +- inst/doc/intro.html | 2 +- man/StorageQueue.Rd | 3 +++ man/queue_endpoint.Rd | 4 ++-- vignettes/intro.Rmd | 2 +- 10 files changed, 25 insertions(+), 21 deletions(-)
Title: Find Differences Between R Objects
Description: Compare complex R objects and reveal the key
differences. Designed particularly for use in testing packages where
being able to quickly isolate key differences makes understanding test
failures much easier.
Author: Hadley Wickham [aut, cre],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between waldo versions 0.2.1 dated 2020-10-08 and 0.2.2 dated 2020-10-15
DESCRIPTION | 6 +++--- MD5 | 24 ++++++++++++------------ NEWS.md | 7 +++++++ R/compare.R | 7 +++++++ R/diff.R | 4 ++-- man/figures/README/unnamed-chunk-11.svg | 2 +- man/figures/README/unnamed-chunk-2.svg | 2 +- man/figures/README/unnamed-chunk-3.svg | 2 +- man/figures/README/unnamed-chunk-5.svg | 2 +- man/figures/README/unnamed-chunk-6.svg | 2 +- man/figures/README/unnamed-chunk-7.svg | 2 +- tests/testthat/test-compare-s4.txt | 7 +++++++ tests/testthat/test-compare.R | 5 +++++ 13 files changed, 49 insertions(+), 23 deletions(-)
Title: Idiograms with Marks and Karyotype Indices
Description: Plot idiograms of karyotypes, plasmids, circular chr. having a set of data.frames
for chromosome data and optionally mark data. Two styles of chromosomes can be used: without or with
visible chromatids (when not circular).
Supports micrometers, cM and Mb or any unit. Two styles of centromeres are available: triangular and rounded;
and six styles of marks: square (squareLeft), dots, cM (cMLeft), cenStyle, upArrow, downArrow;
its legend (label) can be drawn inline or to the right of karyotypes. Idiograms can also be plotted in
concentric circles. It is possible to calculate chromosome indices by Levan et al. (1964)
<doi:10.1111/j.1601-5223.1964.tb01953.x>, karyotype indices of Watanabe et al. (1999)
<doi:10.1007/PL00013869> and Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes
by morphology Guerra (1986) and Levan et al. (1964).
Author: Fernando Roa [aut, cre],
Mariana PC Telles [ctb]
Maintainer: Fernando Roa <froao@unal.edu.co>
Diff between idiogramFISH versions 1.16.6 dated 2020-09-17 and 1.16.7 dated 2020-10-15
DESCRIPTION | 14 MD5 | 48 - NAMESPACE | 2 NEWS.md | 28 R/addNotes.R | 12 R/arrowPlotMark.R | 20 R/genBankReadIF.R | 6 R/mapGGChr.R |only R/plotIdiograms.R | 336 +++++++--- README.md | 1024 +++++++++++++++++++++++++++++- inst/doc/AVignette.Rmd | 4 inst/doc/AVignette.html | 3 inst/doc/index.R | 462 ------------- inst/doc/index.Rmd | 10 inst/doc/index.html | 1192 ------------------------------------ man/figures/cranmanualbookdown.svg | 2 man/figures/cranversion.svg | 4 man/figures/develmanualvignette.svg | 2 man/figures/ggplot.svg |only man/figures/gitbadge.svg | 2 man/figures/manual.svg | 2 man/figures/pkgdownver.svg | 2 man/mapGGChr.Rd |only man/plotIdiograms.Rd | 35 - vignettes/AVignette.Rmd | 4 vignettes/index.Rmd | 10 vignettes/refs/ggplotreshape.bib |only 27 files changed, 1381 insertions(+), 1843 deletions(-)
Title: Archive and Unarchive Databases Using Flat Files
Description: Flat text files provide a robust, compressible, and portable
way to store tables from databases. This package provides convenient
functions for exporting tables from relational database connections
into compressed text files and streaming those text files back into
a database without requiring the whole table to fit in working memory.
Author: Carl Boettiger [aut, cre, cph]
(<https://orcid.org/0000-0002-1642-628X>),
Richard FitzJohn [ctb]
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between arkdb versions 0.0.6 dated 2020-09-18 and 0.0.7 dated 2020-10-15
DESCRIPTION | 6 +- MD5 | 10 +-- NEWS.md | 4 + inst/doc/arkdb.html | 104 ++++++++++++++++++++++------------------- tests/testthat/test-arkdb.R | 6 +- tests/testthat/test-local_db.R | 2 6 files changed, 76 insertions(+), 56 deletions(-)
Title: Classes and Methods to Use Genetic Algorithms for Feature
Selection
Description: Defines classes and methods that can be used
to implement genetic algorithms for feature selection. The idea is
that we want to select a fixed number of features to combine into a
linear classifier that can predict a binary outcome, and can use a
genetic algorithm heuristically to select an optimal set of features.
Author: Kevin R. Coombes
Maintainer: Kevin R. Coombes <krc@silicovore.com>
Diff between GenAlgo versions 2.1.5 dated 2018-10-17 and 2.2.0 dated 2020-10-15
DESCRIPTION | 8 ++++---- MD5 | 17 +++++++++-------- NEWS | 15 ++++++++++++++- R/cp01-genalg.R | 37 ++++++++++++++++++++++++++----------- build/vignette.rds |binary data/gaTourResults.rda |binary data/tourData09.rda |binary inst/doc/genalg.R | 1 - inst/doc/genalg.pdf |binary vignettes/featureSelection.Rmd |only 10 files changed, 53 insertions(+), 25 deletions(-)
Title: Supervised Clustering of Predictor Variables Such as Genes
Description: Methodology for supervised grouping aka "clustering" of
potentially many predictor variables, such as genes etc, implementing
algorithms 'PELORA' and 'WILMA'.
Author: Marcel Dettling <marcel.dettling@zhaw.ch> and Martin Maechler
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between supclust versions 1.0-7 dated 2011-12-02 and 1.1-0 dated 2020-10-15
supclust-1.0-7/supclust/tests/wilma-ex.Rout.save-64b |only supclust-1.1-0/supclust/ChangeLog | 10 +++ supclust-1.1-0/supclust/DESCRIPTION | 21 +++---- supclust-1.1-0/supclust/MD5 | 43 +++++++------- supclust-1.1-0/supclust/NAMESPACE | 6 +- supclust-1.1-0/supclust/R/pelora-utils.R | 2 supclust-1.1-0/supclust/R/pelora.R | 57 ++++++++++--------- supclust-1.1-0/supclust/R/wilma.R | 14 ++-- supclust-1.1-0/supclust/README.md |only supclust-1.1-0/supclust/build |only supclust-1.1-0/supclust/data/leukemia.rda |binary supclust-1.1-0/supclust/man/dlda.Rd | 12 ---- supclust-1.1-0/supclust/man/leukemia.Rd | 13 ++-- supclust-1.1-0/supclust/man/margin.Rd | 12 ---- supclust-1.1-0/supclust/man/pelora.Rd | 8 +- supclust-1.1-0/supclust/man/predict.wilma.Rd | 12 ---- supclust-1.1-0/supclust/man/score.Rd | 13 ---- supclust-1.1-0/supclust/man/sign.change.Rd | 12 ---- supclust-1.1-0/supclust/man/signflip.Rd | 12 ---- supclust-1.1-0/supclust/man/standardize.genes.Rd | 11 --- supclust-1.1-0/supclust/man/wilma.Rd | 14 ++-- supclust-1.1-0/supclust/src/init.c |only supclust-1.1-0/supclust/src/pelora.c | 6 +- supclust-1.1-0/supclust/src/supclust.h |only supclust-1.1-0/supclust/src/wilma.c | 27 --------- 25 files changed, 125 insertions(+), 180 deletions(-)
Title: Analyze Experimental High-Throughput (Omics) Data
Description: The efficient treatment and convenient analysis of experimental high-throughput (omics) data gets facilitated through this collection of diverse functions.
Several functions address advanced object-conversions, like manipulating lists of lists or lists of arrays, reorganizing lists to arrays or into separate vectors, merging of multiple entries, etc.
Another set of functions provides speed-optimized calculation of standard deviation (sd), coefficient of variance (CV) or standard error of the mean (SEM) for data in matrixes or means per line with respect to additional grouping (eg n groups of replicates).
Other functions facilitate dealing with non-redundant information, by indexing unique, adding counters to redundant or eliminating lines with respect redundancy in a given reference-column, etc.
Help is provided to identify very closely matching numeric values to generate (partial) distance matrixes for very big data in a memory efficient manner or to reduce the complexity of large data-sets by combining very close values.
Many times large experimental datasets need some additional filtering, adequate functions are provided.
Batch reading (or writing) of sets of files and combining data to arrays is supported, too.
Convenient data normalization is supported in various different modes, parameter estimation via permutations or boot-strap as well as flexible testing of multiple pair-wise combinations using the framework of 'limma' is provided, too.
Author: Wolfgang Raffelsberger [aut, cre]
Maintainer: Wolfgang Raffelsberger <w.raffelsberger@unistra.fr>
Diff between wrMisc versions 1.3.1 dated 2020-09-18 and 1.4.0 dated 2020-10-15
DESCRIPTION | 8 - MD5 | 34 +++--- NAMESPACE | 2 R/coinPermTest.R | 16 +- R/colorAccording2.R | 43 ++++--- R/linModelSelect.R |only R/moderTestXgrp.R | 32 +++-- R/numPairDeColNames.R |only R/rankToContigTab.R | 6 - build/vignette.rds |binary inst/doc/wrMiscVignette1.R | 19 ++- inst/doc/wrMiscVignette1.Rmd | 69 +++++++++--- inst/doc/wrMiscVignette1.html | 226 +++++++++++++++++++++++++++++------------- man/coinPermTest.Rd | 4 man/colorAccording2.Rd | 7 - man/linModelSelect.Rd |only man/moderTestXgrp.Rd | 4 man/numPairDeColNames.Rd |only man/rankToContigTab.Rd | 6 - vignettes/wrMiscVignette1.Rmd | 69 +++++++++--- 20 files changed, 358 insertions(+), 187 deletions(-)
Title: Stable Iterative Variable Selection
Description: An iterative feature selection method (manuscript submitted) that
internally utilizes various Machine Learning methods that have embedded
feature reduction in order to shrink down the feature space into a small
and yet robust set.
Author: Mehrad Mahmoudian [aut, cre] (<https://orcid.org/0000-0001-7650-1862>),
Mikko Venäläinen [aut, rev] (<https://orcid.org/0000-0003-1777-4259>),
Riku Klèn [aut, ths] (<https://orcid.org/0000-0002-0982-8360>),
Laura Elo [aut, ths, fnd] (<https://orcid.org/0000-0001-5648-4532>)
Maintainer: Mehrad Mahmoudian <mehrad.mahmoudian@utu.fi>
Diff between sivs versions 0.2.2 dated 2020-10-06 and 0.2.3 dated 2020-10-15
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ R/sivs.R | 4 ++-- inst/doc/vignette_simple_usage.Rmd | 2 +- inst/doc/vignette_simple_usage.html | 2 +- man/sivs.Rd | 4 ++-- vignettes/vignette_simple_usage.Rmd | 2 +- 7 files changed, 18 insertions(+), 18 deletions(-)
Title: Full Pattern Summation of X-Ray Powder Diffraction Data
Description: Full pattern summation of X-ray powder diffraction data as
described in Chipera and Bish (2002) <doi:10.1107/S0021889802017405>.
Derives quantitative estimates of crystalline and amorphous phase
concentrations in complex mixtures.
Author: Benjamin Butler [aut, cre],
Stephen Hillier [aut],
Dylan Beaudette [ctb],
Dennis Eberl [ctb]
Maintainer: Benjamin Butler <benjamin.butler@hutton.ac.uk>
Diff between powdR versions 1.2.2 dated 2020-06-17 and 1.2.3 dated 2020-10-15
DESCRIPTION | 12 ++++++------ MD5 | 34 +++++++++++++++++++++------------- NAMESPACE | 4 ++++ NEWS.md | 10 ++++++++++ R/afps.R | 11 +++++++---- R/data.R | 9 +++++++++ R/fps.R | 15 +++++++++++++-- R/qminerals.R | 16 +++++++++++++++- R/regroup.R |only R/tth_transform.R |only data/minerals.rda |binary data/minerals_regroup_structure.rda |only inst/doc/powdR_vignette.Rmd | 2 +- inst/doc/powdR_vignette.html | 6 +++--- man/afps.powdRlib.Rd | 5 +++++ man/fps.powdRlib.Rd | 5 +++++ man/minerals_regroup_structure.Rd |only man/regroup.Rd |only man/regroup.powdRafps.Rd |only man/regroup.powdRfps.Rd |only man/tth_transform.Rd |only vignettes/powdR_vignette.Rmd | 2 +- 22 files changed, 100 insertions(+), 31 deletions(-)
Title: Local Inferential Feature Significance for Multivariate Kernel
Density Estimation
Description: Local inferential feature significance for multivariate kernel density estimation.
Author: Tarn Duong <tarn.duong@gmail.com> & Matt Wand <Matt.Wand@uts.edu.au>
Maintainer: Tarn Duong <tarn.duong@gmail.com>
Diff between feature versions 1.2.13 dated 2015-10-26 and 1.2.14 dated 2020-10-15
feature-1.2.13/feature/inst/doc/feature.Rnw |only feature-1.2.13/feature/inst/doc/feature.pdf |only feature-1.2.13/feature/vignettes/feature.Rnw |only feature-1.2.14/feature/DESCRIPTION | 15 ++--- feature-1.2.14/feature/MD5 | 25 ++++----- feature-1.2.14/feature/NAMESPACE | 2 feature-1.2.14/feature/R/addSignifFeatureData.R | 4 - feature-1.2.14/feature/R/addSignifFeatureRegion.R | 4 - feature-1.2.14/feature/R/featureSignifGUI.R | 8 ++ feature-1.2.14/feature/R/plot.fs.R | 9 ++- feature-1.2.14/feature/R/zzz.R |only feature-1.2.14/feature/build/vignette.rds |binary feature-1.2.14/feature/data/earthquake.RData |binary feature-1.2.14/feature/inst/doc/feature.R | 59 ++++------------------ feature-1.2.14/feature/inst/doc/feature.Rmd |only feature-1.2.14/feature/inst/doc/feature.html |only feature-1.2.14/feature/vignettes/feature.Rmd |only 17 files changed, 50 insertions(+), 76 deletions(-)
Title: Bridge to System Package Manager
Description: Enables binary package installations on Linux distributions.
Provides functions to manage packages via the distribution's package
manager. Also provides transparent integration with R's install.packages()
and a fallback mechanism. When installed as a system package, interacts
with the system's package manager without requiring administrative
privileges via an integrated D-Bus service; otherwise, uses sudo.
Currently, the following backends are supported: DNF, APT.
Author: Iñaki Ucar [aut, cph, cre] (<https://orcid.org/0000-0001-6403-5550>)
Maintainer: Iñaki Ucar <iucar@fedoraproject.org>
Diff between bspm versions 0.3.6 dated 2020-10-13 and 0.3.7 dated 2020-10-15
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ R/manager.R | 2 +- 4 files changed, 11 insertions(+), 7 deletions(-)
More information about survivalmodels at CRAN
Permanent link
Title: Fit, Simulate and Diagnose Models for Network Evolution Based on
Exponential-Family Random Graph Models
Description: An integrated set of extensions to the 'ergm' package to analyze and simulate network evolution based on exponential-family random graph models (ERGM). 'tergm' is a part of the 'statnet' suite of packages for network analysis.
Author: Pavel N. Krivitsky [aut, cre] (<https://orcid.org/0000-0002-9101-3362>),
Mark S. Handcock [aut, ths],
David R. Hunter [ctb],
Steven M. Goodreau [ctb, ths],
Martina Morris [ctb, ths],
Nicole Bohme Carnegie [ctb],
Carter T. Butts [ctb],
Ayn Leslie-Cook [ctb],
Skye Bender-deMoll [ctb],
Li Wang [ctb],
Kirk Li [ctb],
Chad Klumb [ctb]
Maintainer: Pavel N. Krivitsky <pavel@statnet.org>
Diff between tergm versions 3.6.1 dated 2019-06-12 and 3.7.0 dated 2020-10-15
tergm-3.6.1/tergm/R/InitMHP.DynMLE.R |only tergm-3.6.1/tergm/R/InitMHP.DynMLE.blockdiag.R |only tergm-3.6.1/tergm/R/InitMHP.DynMoME.R |only tergm-3.6.1/tergm/man/tergm_MH_proposals.Rd |only tergm-3.7.0/tergm/DESCRIPTION | 46 ++- tergm-3.7.0/tergm/LICENSE | 6 tergm-3.7.0/tergm/MD5 | 167 +++++++------- tergm-3.7.0/tergm/R/InitConstraint.R | 2 tergm-3.7.0/tergm/R/InitErgmProposal.DynMLE.R |only tergm-3.7.0/tergm/R/InitErgmProposal.DynMLE.blockdiag.R |only tergm-3.7.0/tergm/R/InitErgmProposal.DynMoME.R |only tergm-3.7.0/tergm/R/InitErgmTerm.duration.R | 2 tergm-3.7.0/tergm/R/coef.stergm.R | 2 tergm-3.7.0/tergm/R/combine.networks.R | 2 tergm-3.7.0/tergm/R/control.logLik.stergm.R | 2 tergm-3.7.0/tergm/R/control.simulate.stergm.R | 2 tergm-3.7.0/tergm/R/control.stergm.R | 2 tergm-3.7.0/tergm/R/ergm.godfather.R | 13 - tergm-3.7.0/tergm/R/gof.stergm.R | 2 tergm-3.7.0/tergm/R/impute.network.list.R | 2 tergm-3.7.0/tergm/R/is.lasttoggle.R | 2 tergm-3.7.0/tergm/R/logLik.stergm.R | 2 tergm-3.7.0/tergm/R/mcmc.diagnostics.stergm.R | 4 tergm-3.7.0/tergm/R/print.stergm.R | 2 tergm-3.7.0/tergm/R/simulate.stergm.R | 8 tergm-3.7.0/tergm/R/stergm.CMLE.R | 10 tergm-3.7.0/tergm/R/stergm.EGMME.GD.R | 74 +++--- tergm-3.7.0/tergm/R/stergm.EGMME.R | 30 +- tergm-3.7.0/tergm/R/stergm.EGMME.SA.R | 125 +++++----- tergm-3.7.0/tergm/R/stergm.EGMME.initialfit.R | 10 tergm-3.7.0/tergm/R/stergm.R | 13 - tergm-3.7.0/tergm/R/stergm.getMCMCsample.R | 17 - tergm-3.7.0/tergm/R/stergm.utils.R | 2 tergm-3.7.0/tergm/R/summary.statistics.networkDynamic.R | 2 tergm-3.7.0/tergm/R/summary.stergm.R | 2 tergm-3.7.0/tergm/R/tergm-deprecated.R | 2 tergm-3.7.0/tergm/R/zzz.R | 2 tergm-3.7.0/tergm/README.md | 4 tergm-3.7.0/tergm/build/partial.rdb |only tergm-3.7.0/tergm/build/vignette.rds |binary tergm-3.7.0/tergm/inst/CITATION | 6 tergm-3.7.0/tergm/inst/NEWS.Rd | 18 + tergm-3.7.0/tergm/inst/doc/STERGM.Rnw | 8 tergm-3.7.0/tergm/inst/doc/STERGM.pdf |binary tergm-3.7.0/tergm/man/control.simulate.stergm.Rd | 46 ++- tergm-3.7.0/tergm/man/control.stergm.Rd | 136 +++++++---- tergm-3.7.0/tergm/man/ergm-constraints.Rd | 13 - tergm-3.7.0/tergm/man/ergm-proposals.Rd |only tergm-3.7.0/tergm/man/ergm-terms.Rd | 8 tergm-3.7.0/tergm/man/gof.stergm.Rd | 2 tergm-3.7.0/tergm/man/impute.network.list.Rd | 8 tergm-3.7.0/tergm/man/logLik.stergm.Rd | 14 - tergm-3.7.0/tergm/man/mcmc.diagnostics.stergm.Rd | 5 tergm-3.7.0/tergm/man/simulate.stergm.Rd | 92 +++++-- tergm-3.7.0/tergm/man/stergm.Rd | 35 +- tergm-3.7.0/tergm/man/stergm_MCMC_sample.Rd | 36 ++- tergm-3.7.0/tergm/man/tergm-deprecated.Rd | 28 ++ tergm-3.7.0/tergm/man/tergm-internal.Rd | 2 tergm-3.7.0/tergm/man/tergm-package.Rd | 36 --- tergm-3.7.0/tergm/man/tergm.godfather.Rd | 15 - tergm-3.7.0/tergm/src/DynSA.c | 6 tergm-3.7.0/tergm/src/DynSA.h | 4 tergm-3.7.0/tergm/src/MCMCDyn.c | 6 tergm-3.7.0/tergm/src/MCMCDyn.h | 4 tergm-3.7.0/tergm/src/MHproposals_DynMLE.c | 2 tergm-3.7.0/tergm/src/MHproposals_DynMLE.h | 2 tergm-3.7.0/tergm/src/MHproposals_DynMLE_block.c | 2 tergm-3.7.0/tergm/src/MHproposals_DynMLE_block.h | 2 tergm-3.7.0/tergm/src/MHproposals_DynMoME.c | 2 tergm-3.7.0/tergm/src/MHproposals_DynMoME.h | 2 tergm-3.7.0/tergm/src/changestats_duration.c | 8 tergm-3.7.0/tergm/src/changestats_duration.h | 2 tergm-3.7.0/tergm/src/godfather.c | 6 tergm-3.7.0/tergm/src/godfather.h | 4 tergm-3.7.0/tergm/src/include_stubs.c | 2 tergm-3.7.0/tergm/src/init.c | 14 - tergm-3.7.0/tergm/tests/combine.networks.R | 2 tergm-3.7.0/tergm/tests/degree.mean.age.R | 2 tergm-3.7.0/tergm/tests/dynamic_EGMME.R | 2 tergm-3.7.0/tergm/tests/dynamic_EGMME.simple.R | 2 tergm-3.7.0/tergm/tests/dynamic_MLE.R | 4 tergm-3.7.0/tergm/tests/dynamic_MLE_2.R | 2 tergm-3.7.0/tergm/tests/dynamic_MLE_blockdiag.R | 2 tergm-3.7.0/tergm/tests/dynamic_MLE_blockdiag.bipartite.R | 4 tergm-3.7.0/tergm/tests/sim_gf_sum.R | 2 tergm-3.7.0/tergm/tests/simulate_networkDynamic.R | 2 tergm-3.7.0/tergm/tests/tergm_offset_tests.R | 2 tergm-3.7.0/tergm/tests/tergm_parallel.R | 2 tergm-3.7.0/tergm/vignettes/STERGM.Rnw | 8 89 files changed, 672 insertions(+), 501 deletions(-)
Title: An R Package for Text Analysis
Description: A set of tools to analyze texts. Includes, amongst others,
functions for automatic language detection, hyphenation, several
indices of lexical diversity (e.g., type token ratio, HD-D/vocd-D,
MTLD) and readability (e.g., Flesch, SMOG, LIX, Dale-Chall). Basic
import functions for language corpora are also provided, to enable
frequency analyses (supports Celex and Leipzig Corpora Collection
file formats) and measures like tf-idf. Note: For full
functionality a local installation of TreeTagger is recommended. It
is also recommended to not load this package directly, but by
loading one of the available language support packages from the
'l10n' repository <https://undocumeantit.github.io/repos/l10n/>.
'koRpus' also includes a plugin for the R GUI and IDE RKWard,
providing graphical dialogs for its basic features. The respective
R package 'rkward' cannot be installed directly from a repository,
as it is a part of RKWard. To make full use of this feature, please
install RKWard from <https://rkward.kde.org> (plugins are detected
automatically). Due to some restrictions on CRAN, the full package
sources are only available from the project homepage. To ask for
help, report bugs, request features, or discuss the development of
the package, please subscribe to the koRpus-dev mailing list
(<https://korpusml.reaktanz.de>).
Author: Meik Michalke [aut, cre],
Earl Brown [ctb],
Alberto Mirisola [ctb],
Alexandre Brulet [ctb],
Laura Hauser [ctb]
Maintainer: Meik Michalke <meik.michalke@hhu.de>
Diff between koRpus versions 0.13-2 dated 2020-09-24 and 0.13-3 dated 2020-10-15
ChangeLog | 5 ++ DESCRIPTION | 48 ++++++++++++++++++--------- MD5 | 20 +++++------ R/koRpus-internal.R | 64 +++++++++++++++++++----------------- R/koRpus-package.R | 4 +- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 4 +- inst/NEWS.Rd | 22 ++++++++++-- inst/doc/koRpus_vignette.html | 74 ++++++++++++++++++++++++++++++++++++++++-- man/koRpus-package.Rd | 4 +- 11 files changed, 178 insertions(+), 67 deletions(-)
Title: Convert Among Citation Formats
Description: Converts among many citation formats, including 'BibTeX',
'Citeproc', 'Codemeta', 'RDF XML', 'RIS', 'Schema.org', and
'Citation File Format'. A low level 'R6' class is provided, as well
as stand-alone functions for each citation format for both read
and write.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>)
Maintainer: Scott Chamberlain <sckott@protonmail.com>
Diff between handlr versions 0.2.0 dated 2019-08-19 and 0.3.0 dated 2020-10-15
DESCRIPTION | 22 ++- LICENSE | 2 MD5 | 93 ++++++++------- NAMESPACE | 3 NEWS.md | 17 ++ R/a_types.R |only R/bibtex_reader.R | 7 + R/bibtex_writer.R | 11 - R/cff_reader.R |only R/cff_writer.R |only R/citeproc_reader.R | 43 ++++--- R/citeproc_utils.R | 84 ++++++++++++++ R/citeproc_writer.R | 46 ++++--- R/client.R | 116 ++++++++++++------- R/codemeta_reader.R | 2 R/codemeta_writer.R | 4 R/handl.R | 5 R/handl_to_df.R | 2 R/handlr-package.r | 8 - R/rdf_xml_writer.R | 6 - R/ris_reader.R | 2 R/ris_writer.R | 4 R/schema_org_writer.R | 4 R/zzz.R | 7 + README.md | 163 +++------------------------ inst/extdata/citation-norefs.cff |only inst/extdata/citation.cff |only inst/extdata/citeproc2.json |only man/HandlrClient.Rd | 216 +++++++++++++++++++++++++++++------- man/bibtex_reader.Rd | 15 ++ man/bibtex_writer.Rd | 27 ++-- man/c.handl.Rd | 2 man/cff_reader.Rd |only man/cff_reference_types.Rd |only man/cff_writer.Rd |only man/citeproc_reader.Rd | 12 +- man/citeproc_writer.Rd | 20 ++- man/codemeta_reader.Rd | 10 + man/codemeta_writer.Rd | 22 ++- man/handl.Rd | 5 man/handl_to_df.Rd | 2 man/handlr-package.Rd | 5 man/rdf_xml_writer.Rd | 19 ++- man/ris_reader.Rd | 15 +- man/ris_writer.Rd | 25 ++-- man/schema_org_writer.Rd | 19 ++- tests/testthat/test-bibtex_reader.R | 2 tests/testthat/test-bibtex_writer.R | 8 - tests/testthat/test-cff_reader.R |only tests/testthat/test-cff_writer.R |only tests/testthat/test-client.R | 4 tests/testthat/test-handl-class.R | 1 tests/testthat/test-handl_to_df.R | 2 53 files changed, 675 insertions(+), 407 deletions(-)
Title: Fast, Dependency-Free Geodesic Distance Calculations
Description: Dependency-free, ultra fast calculation of geodesic
distances. Includes the reference nanometre-accuracy geodesic
distances of Karney (2013) <doi:10.1007/s00190-012-0578-z>, as used by
the 'sf' package, as well as Haversine and Vincenty distances. Default
distance measure is the "Mapbox cheap ruler" which is generally more
accurate than Haversine or Vincenty for distances out to a few hundred
kilometres, and is considerably faster. The main function accepts one
or two inputs in almost any generic rectangular form, and returns
either matrices of pairwise distances, or vectors of sequential
distances.
Author: Mark Padgham [aut, cre],
Michael D. Sumner [aut],
Charles F.F Karney [cph] (Original author of included code for geodesic
distances)
Maintainer: Mark Padgham <mark.padgham@email.com>
Diff between geodist versions 0.0.4 dated 2020-05-18 and 0.0.6 dated 2020-10-15
DESCRIPTION | 52 +++++++++++++++++++++---------------- MD5 | 50 ++++++++++++++++++----------------- NEWS.md | 8 +++++ R/geodist-vec.R | 25 +++++++++-------- R/geodist.R | 30 ++++++++++++--------- R/utils.R | 22 ++++++++------- build/vignette.rds |binary inst/WORDLIST |only inst/doc/geodist.R | 4 +- inst/doc/geodist.Rmd | 9 +++--- inst/doc/geodist.html | 25 ++++++++++++----- inst/precommit |only man/geodist.Rd | 5 ++- src/dists_paired.c | 24 ++++++++++++++--- src/dists_paired_vec.c | 32 +++++++++++++++++++--- src/dists_seq.c | 21 +++++++++++--- src/dists_seq_vec.c | 21 +++++++++++--- src/dists_x.c | 21 +++++++++++--- src/dists_x_vec.c | 26 ++++++++++++++---- src/dists_xy.c | 26 ++++++++++++++---- src/dists_xy_vec.c | 32 +++++++++++++++++++--- src/range_seq.c | 13 +++++---- src/range_x.c | 13 +++++---- src/range_xy.c | 24 ++++++++++++++--- tests/testthat/test-geodist.R | 6 +++- tests/testthat/test-input-format.R | 21 ++++++++++++-- vignettes/geodist.Rmd | 9 +++--- 27 files changed, 362 insertions(+), 157 deletions(-)
Title: Single Cell mRNA Soup eXterminator
Description: Quantify, profile and remove ambient mRNA contamination (the "soup") from droplet based single cell RNA-seq experiments. Implements the method described in Young et al. (2018) <doi:10.1101/303727>.
Author: Matthew Daniel Young
Maintainer: Matthew Daniel Young <my4@sanger.ac.uk>
Diff between SoupX versions 1.4.5 dated 2020-05-26 and 1.4.8 dated 2020-10-15
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- R/plotFunctions.R | 15 ++++++++++----- README.md | 20 ++++++++++++++++---- inst/doc/pbmcTutorial.R | 23 +++++++++++++++++++++-- inst/doc/pbmcTutorial.Rmd | 37 ++++++++++++++++++++++++++++++++----- inst/doc/pbmcTutorial.html | 42 +++++++++++++++++++++++++++++++----------- man/plotChangeMap.Rd | 5 ++++- man/plotMarkerMap.Rd | 21 ++++++++++++++++++++- vignettes/pbmcTutorial.Rmd | 37 ++++++++++++++++++++++++++++++++----- 10 files changed, 180 insertions(+), 48 deletions(-)
Title: Small Count Rounding of Tabular Data
Description: A statistical disclosure control tool to protect frequency tables in cases where small values are sensitive. The function PLSrounding() performs small count rounding of necessary inner cells so that all small frequencies of cross-classifications to be published (publishable cells) are rounded. This is equivalent to changing micro data since frequencies of unique combinations are changed. Thus, additivity and consistency are guaranteed. The methodology is described in Langsrud and Heldal (2018) <https://www.researchgate.net/publication/327768398_An_Algorithm_for_Small_Count_Rounding_of_Tabular_Data>.
Author: Øyvind Langsrud [aut, cre],
Johan Heldal [aut]
Maintainer: Øyvind Langsrud <oyl@ssb.no>
Diff between SmallCountRounding versions 0.5.0 dated 2020-09-21 and 0.6.0 dated 2020-10-15
DESCRIPTION | 8 +-- MD5 | 12 ++-- NAMESPACE | 1 NEWS.md | 4 + R/RoundViaDummy.R | 95 ++++++++++++++++++++++++++++++++++---- man/RoundViaDummy.Rd | 3 + tests/testthat/test-PLSrounding.R | 51 ++++++++++++++++++++ 7 files changed, 155 insertions(+), 19 deletions(-)
More information about SmallCountRounding at CRAN
Permanent link
Title: FWER and FDR Controlling Procedures for Multiple Correlation
Tests
Description: Different multiple testing procedures for correlation tests are implemented. These procedures were shown to theoretically control asymptotically the Family Wise Error Rate (Roux (2018) <https://tel.archives-ouvertes.fr/tel-01971574v1>) or the False Discovery Rate (Cai & Liu (2016) <doi:10.1080/01621459.2014.999157>). The package gather four test statistics used in correlation testing, four FWER procedures with either single step or stepdown versions, and four FDR procedures.
Author: Gannaz Irene [aut, cre]
Maintainer: Gannaz Irene <irene.gannaz@insa-lyon.fr>
Diff between TestCor versions 0.0.2.1 dated 2020-09-22 and 0.0.2.2 dated 2020-10-15
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/annexes.cpp | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Utility Functions for Large-scale Data
Description: Utility functions for large-scale data. For now, package 'bigutilsr'
mainly includes functions for outlier detection and unbiased PCA projection.
Author: Florian Privé [aut, cre]
Maintainer: Florian Privé <florian.prive.21@gmail.com>
Diff between bigutilsr versions 0.3.2 dated 2020-05-15 and 0.3.3 dated 2020-10-15
DESCRIPTION | 14 +- MD5 | 20 ++-- NAMESPACE | 3 R/outlier-dist.R | 54 +++++++++++ man/bigutilsr-package.Rd | 2 man/covRob.Rd | 2 man/covrob_ogk.Rd | 156 ++++++++++++++++----------------- man/geometric_median.Rd |only man/predict.Procrustes.Rd | 46 ++++----- man/reexports.Rd | 30 +++--- man/rollmean.Rd | 46 ++++----- tests/testthat/test-geometric-median.R |only 12 files changed, 215 insertions(+), 158 deletions(-)
Title: Multiple Responses Subgroup Identification using 'GUIDE'
Algorithm
Description: An R implementation of 'GUIDE' style algorithm focusing on subgroup identification problem
under multiple responses of Loh et al. (2019) <doi:10.1002/widm.1326>. This package is intended for use
for randomized trials and observational studies.
Author: Peigen Zhou [aut, cre] (<https://orcid.org/0000-0003-4609-0374>),
Wei-Yin Loh [aut] (<https://orcid.org/0000-0001-6983-2495>)
Maintainer: Peigen Zhou <pzhou9@wisc.edu>
Diff between MrSGUIDE versions 0.1.1 dated 2020-05-30 and 0.1.2 dated 2020-10-15
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NEWS.md | 4 ++++ R/mrsimp.R | 5 +++-- R/predict.R | 1 + README.md | 8 ++++---- build/vignette.rds |binary inst/doc/UsageOfMrSGUIDE.html | 4 ++-- 8 files changed, 26 insertions(+), 20 deletions(-)
Title: Robust Gaussian Stochastic Process Emulation
Description: Robust parameter estimation and prediction of Gaussian stochastic process emulators. It allows for robust parameter estimation and prediction using Gaussian stochastic process emulator. It also implements the parallel partial Gaussian stochastic process emulator for computer model with massive outputs See the reference: Mengyang Gu and Jim Berger, 2016, Annals of Applied Statistics; Mengyang Gu, Xiaojing Wang and Jim Berger, 2018, Annals of Statistics.
Author: Mengyang Gu [aut, cre],
Jesus Palomo [aut],
James Berger [aut]
Maintainer: Mengyang Gu <mengyang@pstat.ucsb.edu>
Diff between RobustGaSP versions 0.6.0 dated 2020-07-09 and 0.6.1 dated 2020-10-15
CHANGELOG | 5 ++ DESCRIPTION | 6 +-- MD5 | 32 ++++++++--------- R/ppgasp.R | 11 ++++++ R/rgasp.R | 34 ++++++++++++------- build/partial.rdb |binary man/log_marginal_lik.Rd | 5 ++ man/log_marginal_lik_deriv.Rd | 5 ++ man/log_marginal_lik_deriv_ppgasp.Rd | 5 ++ man/log_profile_lik.Rd | 5 ++ man/log_profile_lik_deriv.Rd | 5 ++ man/log_profile_lik_deriv_ppgasp.Rd | 5 ++ man/log_profile_lik_ppgasp.Rd | 5 ++ man/neg_log_marginal_post_approx_ref_deriv_ppgasp.Rd | 5 ++ man/neg_log_marginal_post_approx_ref_ppgasp.Rd | 5 ++ man/predict.ppgasp.Rd | 9 ++--- man/separable_multi_kernel.Rd | 2 - 17 files changed, 100 insertions(+), 44 deletions(-)
Title: Routines for L1 Estimation
Description: L1 estimation for linear regression, density, distribution function,
quantile function and random number generation for univariate and multivariate
Laplace distribution.
Author: Felipe Osorio [aut, cre] (<https://orcid.org/0000-0002-4675-5201>),
Tymoteusz Wolodzko [aut]
Maintainer: Felipe Osorio <felipe.osorios@usm.cl>
Diff between L1pack versions 0.38.19 dated 2017-11-14 and 0.38.196 dated 2020-10-15
L1pack-0.38.19/L1pack/src/distn.h |only L1pack-0.38.19/L1pack/src/init.c |only L1pack-0.38.19/L1pack/src/matrix.c |only L1pack-0.38.19/L1pack/src/matrix.h |only L1pack-0.38.19/L1pack/src/random.h |only L1pack-0.38.196/L1pack/ChangeLog | 5 L1pack-0.38.196/L1pack/DESCRIPTION | 31 +- L1pack-0.38.196/L1pack/MD5 | 40 +- L1pack-0.38.196/L1pack/NAMESPACE | 3 L1pack-0.38.196/L1pack/R/control.R | 5 L1pack-0.38.196/L1pack/R/distn.R | 10 L1pack-0.38.196/L1pack/R/l1fit.R | 2 L1pack-0.38.196/L1pack/R/lad.R | 21 - L1pack-0.38.196/L1pack/R/random.R | 8 L1pack-0.38.196/L1pack/inst/CITATION | 8 L1pack-0.38.196/L1pack/man/l1pack.control.Rd | 5 L1pack-0.38.196/L1pack/src/R_init_L1pack.c |only L1pack-0.38.196/L1pack/src/base.h | 21 - L1pack-0.38.196/L1pack/src/distn.c | 15 - L1pack-0.38.196/L1pack/src/interface.c |only L1pack-0.38.196/L1pack/src/interface.h |only L1pack-0.38.196/L1pack/src/l1fit.f | 148 ++++----- L1pack-0.38.196/L1pack/src/lad.c | 401 ++++++++++++--------------- L1pack-0.38.196/L1pack/src/lad.h | 56 +-- L1pack-0.38.196/L1pack/src/random.c | 29 + 25 files changed, 399 insertions(+), 409 deletions(-)
Title: Provides Iterator Construct
Description: Support for iterators, which allow a programmer to traverse
through all the elements of a vector, list, or other collection of data.
Author: Michelle Wallig [cre],
Revolution Analytics [aut, cph],
Steve Weston [aut]
Maintainer: Michelle Wallig <Michelle.Wallig@microsoft.com>
Diff between iterators versions 1.0.12 dated 2019-07-26 and 1.0.13 dated 2020-10-15
iterators-1.0.12/iterators/NEWS |only iterators-1.0.13/iterators/DESCRIPTION | 18 +++++++++--------- iterators-1.0.13/iterators/MD5 | 11 ++++++----- iterators-1.0.13/iterators/NEWS.md |only iterators-1.0.13/iterators/README.md |only iterators-1.0.13/iterators/build/vignette.rds |binary iterators-1.0.13/iterators/inst/doc/iterators.pdf |binary iterators-1.0.13/iterators/inst/doc/writing.pdf |binary 8 files changed, 15 insertions(+), 14 deletions(-)
Title: A Grammar of Animated Graphics
Description: The grammar of graphics as implemented in the 'ggplot2' package has
been successful in providing a powerful API for creating static
visualisation. In order to extend the API for animated graphics this package
provides a completely new set of grammar, fully compatible with 'ggplot2'
for specifying transitions and animations in a flexible and extensible way.
Author: Thomas Lin Pedersen [aut, cre]
(<https://orcid.org/0000-0002-5147-4711>),
David Robinson [aut],
RStudio [cph]
Maintainer: Thomas Lin Pedersen <thomasp85@gmail.com>
Diff between gganimate versions 1.0.6 dated 2020-07-08 and 1.0.7 dated 2020-10-15
DESCRIPTION | 10 +++--- MD5 | 16 +++++----- NEWS.md | 4 ++ R/animate.R | 16 ++++++++-- inst/doc/gganimate.R | 2 - inst/doc/gganimate.Rmd | 2 - inst/doc/gganimate.html | 71 ++++++++++++++++++++++++++++++++++++++++++++++++ man/animate.Rd | 11 +++++-- vignettes/gganimate.Rmd | 2 - 9 files changed, 112 insertions(+), 22 deletions(-)
Title: Provides Foreach Looping Construct
Description: Support for the foreach looping construct. Foreach is an
idiom that allows for iterating over elements in a collection,
without the use of an explicit loop counter. This package in
particular is intended to be used for its return value, rather
than for its side effects. In that sense, it is similar to the
standard lapply function, but doesn't require the evaluation
of a function. Using foreach without side effects also
facilitates executing the loop in parallel.
Author: Michelle Wallig [cre],
Microsoft [aut, cph],
Steve Weston [aut]
Maintainer: Michelle Wallig <Michelle.Wallig@microsoft.com>
Diff between foreach versions 1.5.0 dated 2020-03-30 and 1.5.1 dated 2020-10-15
DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- NEWS.md | 4 ++++ build/vignette.rds |binary inst/doc/foreach.html | 44 ++++++++++++++++++++++++-------------------- inst/doc/nested.html | 22 +++++++++++++--------- 6 files changed, 52 insertions(+), 40 deletions(-)
Title: Interface to Azure Cognitive Services
Description: An interface to Azure Cognitive Services <https://docs.microsoft.com/en-us/azure/cognitive-services/>. Both an 'Azure Resource Manager' interface, for deploying Cognitive Services resources, and a client framework are supplied. While 'AzureCognitive' can be called by the end-user, it is meant to provide a foundation for other packages that will support specific services, like Computer Vision, Custom Vision, language translation, and so on. Part of the 'AzureR' family of packages.
Author: Hong Ooi [aut, cre],
Microsoft [cph]
Maintainer: Hong Ooi <hongooi73@gmail.com>
Diff between AzureCognitive versions 1.0.0 dated 2019-11-12 and 1.0.1 dated 2020-10-15
DESCRIPTION | 16 ++++++++-------- MD5 | 31 ++++++++++++++++--------------- NEWS.md |only R/az_cogsvc.R | 2 +- R/endpoint.R | 8 ++++---- R/get_cognitive_token.R | 14 +++++++++----- README.md | 4 ++-- build/vignette.rds |binary inst/doc/intro.Rmd | 2 +- inst/doc/intro.html | 24 ++++++++++++++---------- man/az_cognitive_service.Rd | 5 ----- man/call_cognitive_endpoint.Rd | 8 ++++---- man/cognitive_endpoint.Rd | 8 ++++---- man/get_cognitive_token.Rd | 4 ++-- tests/testthat/test01_cognitive.R | 1 + tests/testthat/test02_cogsvc_token.R | 27 +++++++++++++++++++++++---- vignettes/intro.Rmd | 2 +- 17 files changed, 90 insertions(+), 66 deletions(-)
More information about AzureCognitive at CRAN
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