Title: Global Univariate Minimization
Description: Global univariate minimization of Lipschitz functions is performed by using Pijavski method, which was published in Pijavski (1972) <DOI:10.1016/0041-5553(72)90115-2>.
Author: Gleb Beliakov [aut, cre],
Gita Das [aut],
Jonathan Wells [ctb],
Hewlett-Packard Company [ctb],
Silicon Graphics Computer Systems Inc. [ctb]
Maintainer: Gleb Beliakov <gleb@deakin.edu.au>
Diff between Pijavski versions 1.0 dated 2016-03-12 and 1.0.3 dated 2020-10-22
DESCRIPTION | 16 +++++++-------- MD5 | 8 +++---- src/RcppExports.cpp | 23 +++++++++++++++++++++ src/heap.h | 15 ++++++++++++-- src/pijavski.cpp | 55 ++++++++++++++++++++++++++++++++++++---------------- 5 files changed, 87 insertions(+), 30 deletions(-)
Title: Fitting the Multinomial Probit Model
Description: Fits the Bayesian multinomial probit model via Markov chain
Monte Carlo. The multinomial probit model is often used to analyze
the discrete choices made by individuals recorded in survey data.
Examples where the multinomial probit model may be useful include the
analysis of product choice by consumers in market research and the
analysis of candidate or party choice by voters in electoral studies.
The MNP package can also fit the model with different choice sets for
each individual, and complete or partial individual choice orderings
of the available alternatives from the choice set. The estimation is
based on the efficient marginal data augmentation algorithm that is
developed by Imai and van Dyk (2005). "A Bayesian Analysis of the
Multinomial Probit Model Using the Data Augmentation." Journal of
Econometrics, Vol. 124, No. 2 (February), pp. 311-334.
<doi:10.1016/j.jeconom.2004.02.002> Detailed examples are given in
Imai and van Dyk (2005). "MNP: R Package for Fitting the Multinomial
Probit Model." Journal of Statistical Software, Vol. 14, No. 3 (May),
pp. 1-32. <doi:10.18637/jss.v014.i03>.
Author: Kosuke Imai [aut, cre],
David van Dyk [aut],
Hubert Jin [ctb]
Maintainer: Kosuke Imai <imai@harvard.edu>
Diff between MNP versions 3.1-0 dated 2017-09-27 and 3.1-1 dated 2020-10-22
DESCRIPTION | 28 ++++++++++++++-------------- MD5 | 6 +++--- build/vignette.rds |binary inst/doc/MNP.pdf |binary 4 files changed, 17 insertions(+), 17 deletions(-)
Title: Feature Selection for 'mlr3'
Description: Implements methods for feature selection with
'mlr3', e.g. random search and sequential selection. Various
termination criteria can be set and combined. The class
'AutoFSelector' provides a convenient way to perform nested resampling
in combination with 'mlr3'.
Author: Marc Becker [aut, cre] (<https://orcid.org/0000-0002-8115-0400>),
Patrick Schratz [aut] (<https://orcid.org/0000-0003-0748-6624>),
Michel Lang [aut] (<https://orcid.org/0000-0001-9754-0393>),
Bernd Bischl [aut] (<https://orcid.org/0000-0001-6002-6980>)
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3fselect versions 0.3.0 dated 2020-09-22 and 0.4.0 dated 2020-10-22
mlr3fselect-0.3.0/mlr3fselect/R/AutoFSelect.R |only mlr3fselect-0.3.0/mlr3fselect/build |only mlr3fselect-0.3.0/mlr3fselect/inst/references.bib |only mlr3fselect-0.3.0/mlr3fselect/man/AutoFSelect.Rd |only mlr3fselect-0.3.0/mlr3fselect/man/mlr_terminators.Rd |only mlr3fselect-0.3.0/mlr3fselect/man/trm.Rd |only mlr3fselect-0.3.0/mlr3fselect/man/trms.Rd |only mlr3fselect-0.3.0/mlr3fselect/tests/testthat/test_AutoFSelect.R |only mlr3fselect-0.4.0/mlr3fselect/DESCRIPTION | 27 +- mlr3fselect-0.4.0/mlr3fselect/MD5 | 66 +++---- mlr3fselect-0.4.0/mlr3fselect/NAMESPACE | 9 mlr3fselect-0.4.0/mlr3fselect/NEWS.md | 20 ++ mlr3fselect-0.4.0/mlr3fselect/R/AutoFSelector.R |only mlr3fselect-0.4.0/mlr3fselect/R/FSelectInstanceMultiCrit.R | 2 mlr3fselect-0.4.0/mlr3fselect/R/FSelectInstanceSingleCrit.R | 2 mlr3fselect-0.4.0/mlr3fselect/R/FSelectorDesignPoints.R | 2 mlr3fselect-0.4.0/mlr3fselect/R/FSelectorGeneticSearch.R |only mlr3fselect-0.4.0/mlr3fselect/R/FSelectorRFE.R | 94 +++++++--- mlr3fselect-0.4.0/mlr3fselect/R/FSelectorRandomSearch.R | 2 mlr3fselect-0.4.0/mlr3fselect/R/FSelectorSequential.R | 2 mlr3fselect-0.4.0/mlr3fselect/R/ObjectiveFSelect.R | 10 - mlr3fselect-0.4.0/mlr3fselect/R/bibentries.R |only mlr3fselect-0.4.0/mlr3fselect/R/reexports.R | 25 -- mlr3fselect-0.4.0/mlr3fselect/R/zzz.R | 4 mlr3fselect-0.4.0/mlr3fselect/README.md | 4 mlr3fselect-0.4.0/mlr3fselect/man/AutoFSelector.Rd |only mlr3fselect-0.4.0/mlr3fselect/man/FSelectorDesignPoints.Rd | 2 mlr3fselect-0.4.0/mlr3fselect/man/FSelectorExhaustiveSearch.Rd | 2 mlr3fselect-0.4.0/mlr3fselect/man/FSelectorGeneticSearch.Rd |only mlr3fselect-0.4.0/mlr3fselect/man/FSelectorRFE.Rd | 30 ++- mlr3fselect-0.4.0/mlr3fselect/man/FSelectorRandomSearch.Rd | 7 mlr3fselect-0.4.0/mlr3fselect/man/FSelectorSequential.Rd | 2 mlr3fselect-0.4.0/mlr3fselect/man/mlr3fselect-package.Rd | 6 mlr3fselect-0.4.0/mlr3fselect/man/reexports.Rd |only mlr3fselect-0.4.0/mlr3fselect/tests/testthat/helper.R | 13 - mlr3fselect-0.4.0/mlr3fselect/tests/testthat/test_AutoFSelector.R |only mlr3fselect-0.4.0/mlr3fselect/tests/testthat/test_FSelectInstanceSingleCrit.R | 12 - mlr3fselect-0.4.0/mlr3fselect/tests/testthat/test_FSelectorExhaustiveSearch.R | 5 mlr3fselect-0.4.0/mlr3fselect/tests/testthat/test_FSelectorGeneticSearch.R |only mlr3fselect-0.4.0/mlr3fselect/tests/testthat/test_FSelectorRFE.R | 62 ++++++ mlr3fselect-0.4.0/mlr3fselect/tests/testthat/test_FSelectorSequential.R | 2 mlr3fselect-0.4.0/mlr3fselect/tests/testthat/test_ObjectiveFSelect.R | 11 - 42 files changed, 279 insertions(+), 144 deletions(-)
Title: Case-Wise and Cluster-Wise Derivatives for Mixed Effects Models
Description: Compute case-wise and cluster-wise derivative for mixed effects models with respect to fixed effects parameter, random effect (co)variances, and residual variance. This material is partially based on work supported by the National Science Foundation under Grant Number 1460719.
Author: Ting Wang [aut, cre],
Edgar Merkle [aut] (<https://orcid.org/0000-0001-7158-0653>),
Yves Rosseel [ctb]
Maintainer: Ting Wang <twb8d@mail.missouri.edu>
Diff between merDeriv versions 0.2-1 dated 2020-10-18 and 0.2-2 dated 2020-10-22
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/vcov.glmerMod.R | 5 ++--- build/partial.rdb |binary inst/tinytest/test_merDeriv.R | 10 +++++----- 5 files changed, 15 insertions(+), 16 deletions(-)
Title: Construct Complex Table with 'kable' and Pipe Syntax
Description: Build complex HTML or 'LaTeX' tables using 'kable()' from 'knitr'
and the piping syntax from 'magrittr'. Function 'kable()' is a light weight
table generator coming from 'knitr'. This package simplifies the way to
manipulate the HTML or 'LaTeX' codes generated by 'kable()' and allows
users to construct complex tables and customize styles using a readable
syntax.
Author: Hao Zhu [aut, cre] (<https://orcid.org/0000-0002-3386-6076>),
Thomas Travison [ctb],
Timothy Tsai [ctb],
Will Beasley [ctb],
Yihui Xie [ctb],
GuangChuang Yu [ctb],
Stéphane Laurent [ctb],
Rob Shepherd [ctb],
Yoni Sidi [ctb],
Brian Salzer [ctb],
George Gui [ctb],
Yeliang Fan [ctb],
Duncan Murdoch [ctb],
Bill Evans [ctb]
Maintainer: Hao Zhu <haozhu233@gmail.com>
Diff between kableExtra versions 1.3.0 dated 2020-10-22 and 1.3.1 dated 2020-10-22
DESCRIPTION | 6 +-- MD5 | 20 ++++++------ R/row_spec.R | 10 +++--- R/util.R | 3 + R/zzz.R | 2 - inst/doc/awesome_table_in_html.html | 30 +++++++++--------- inst/doc/awesome_table_in_pdf.Rmd | 5 ++- inst/doc/awesome_table_in_pdf.pdf |binary inst/doc/best_practice_for_newline_in_latex_table.pdf |binary inst/doc/legacy_features.html | 4 +- vignettes/awesome_table_in_pdf.Rmd | 5 ++- 11 files changed, 46 insertions(+), 39 deletions(-)
Title: Multivariate Data Analysis for Chemometrics
Description: Projection based methods for preprocessing,
exploring and analysis of multivariate data used in chemometrics.
S. Kucheryavskiy (2020) <doi: 10.1016/j.chemolab.2020.103937>.
Author: Sergey Kucheryavskiy
Maintainer: Sergey Kucheryavskiy <svkucheryavski@gmail.com>
Diff between mdatools versions 0.11.1 dated 2020-07-23 and 0.11.2 dated 2020-10-22
mdatools-0.11.1/mdatools/inst/testdata |only mdatools-0.11.1/mdatools/tests |only mdatools-0.11.2/mdatools/DESCRIPTION | 9 +- mdatools-0.11.2/mdatools/MD5 | 55 +-------------- mdatools-0.11.2/mdatools/NEWS.md | 9 ++ mdatools-0.11.2/mdatools/R/classres.R | 6 - mdatools-0.11.2/mdatools/R/simcam.R | 18 ++-- mdatools-0.11.2/mdatools/README.md | 10 +- mdatools-0.11.2/mdatools/man/plotModelDistance.simcam.Rd | 16 ++-- 9 files changed, 45 insertions(+), 78 deletions(-)
Title: Inferential Statistics
Description: Computation of various confidence intervals (Altman et al. (2000), ISBN:978-0-727-91375-3; Hedderich and Sachs (2018), ISBN:978-3-662-56657-2) including bootstrapped versions (Davison and Hinkley (1997), ISBN:978-0-511-80284-3) as well as Hsu (Hedderich and Sachs (2018), ISBN:978-3-662-56657-2), permutation (Janssen (1997), <doi:10.1016/S0167-7152(97)00043-6>), bootstrap (Davison and Hinkley (1997), ISBN:978-0-511-80284-3) and multiple imputation (Barnard and Rubin (1999), <doi:10.1093/biomet/86.4.948>) t-test. Graphical visualization by volcano plots.
Author: Matthias Kohl [aut, cre] (<https://orcid.org/0000-0001-9514-8910>)
Maintainer: Matthias Kohl <Matthias.Kohl@stamats.de>
Diff between MKinfer versions 0.5 dated 2020-04-25 and 0.6 dated 2020-10-22
DESCRIPTION | 8 - MD5 | 16 +- NEWS | 8 + R/binomDiffCI.R | 1 R/imputeSD.R | 6 R/normCI.R | 2 build/vignette.rds |binary inst/doc/MKinfer.html | 323 +++++++++++++++++++++++++++--------------------- man/0MKinfer-package.Rd | 4 9 files changed, 209 insertions(+), 159 deletions(-)
Title: Data Sets Used Useful for Modeling Packages
Description: Data sets used for demonstrating or testing model-related packages are contained in this package.
Author: Max Kuhn [aut, cre],
RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between modeldata versions 0.0.2 dated 2020-06-22 and 0.1.0 dated 2020-10-22
DESCRIPTION | 8 ++++---- MD5 | 32 +++++++++++++++++++------------- NEWS.md | 6 ++++++ R/ames.R | 4 ++-- R/cells.R | 2 +- R/crickets.R |only R/grants.R |only R/okc_text.R | 5 ++++- R/sacremento.R | 2 +- README.md | 36 +++++++++++++++++++++++++++++++----- data/ames.rda |binary data/crickets.rda |only data/datalist | 2 ++ data/grants.rda |only man/Sacramento.Rd | 2 +- man/ames.Rd | 4 ++-- man/cells.Rd | 2 +- man/crickets.Rd |only man/grants.Rd |only man/okc_text.Rd | 5 ++++- 20 files changed, 78 insertions(+), 32 deletions(-)
Title: Learn Computer and Data Science using Algorithmic Trading
Description: Provide sets of functions and methods to learn and practice data science using idea of algorithmic trading.
Main goal is to process information within "Decision Support System" to come up with analysis or predictions.
There are several utilities such as dynamic and adaptive risk management using reinforcement learning
and even functions to generate predictions of price changes using pattern recognition deep regression learning.
Summary of Methods used: Awesome H2O tutorials: <https://github.com/h2oai/awesome-h2o>,
Market Type research of Van Tharp Institute: <https://www.vantharp.com/>,
Reinforcement Learning R package: <https://CRAN.R-project.org/package=ReinforcementLearning>.
Author: Vladimir Zhbanko
Maintainer: Vladimir Zhbanko <vladimir.zhbanko@gmail.com>
Diff between lazytrade versions 0.4.0 dated 2020-09-16 and 0.4.1 dated 2020-10-22
lazytrade-0.4.0/lazytrade/R/evaluate_market_type.R |only lazytrade-0.4.0/lazytrade/R/generate_RL_policy.R |only lazytrade-0.4.0/lazytrade/R/generate_RL_policy_mt.R |only lazytrade-0.4.0/lazytrade/R/log_RL_progress.R |only lazytrade-0.4.0/lazytrade/R/log_RL_progress_mt.R |only lazytrade-0.4.0/lazytrade/R/profit_factor.R |only lazytrade-0.4.0/lazytrade/R/record_policy.R |only lazytrade-0.4.0/lazytrade/R/record_policy_mt.R |only lazytrade-0.4.0/lazytrade/R/writeCommandViaCSV.R |only lazytrade-0.4.0/lazytrade/R/write_control_parameters.R |only lazytrade-0.4.0/lazytrade/R/write_control_parameters_mt.R |only lazytrade-0.4.0/lazytrade/data/macd_ML2.rda |only lazytrade-0.4.0/lazytrade/inst/extdata/DL_Regression-EURUSD-75-15 |only lazytrade-0.4.0/lazytrade/inst/extdata/MarketTypeLog8132101.csv |only lazytrade-0.4.0/lazytrade/man/evaluate_market_type.Rd |only lazytrade-0.4.0/lazytrade/man/generate_RL_policy.Rd |only lazytrade-0.4.0/lazytrade/man/generate_RL_policy_mt.Rd |only lazytrade-0.4.0/lazytrade/man/log_RL_progress.Rd |only lazytrade-0.4.0/lazytrade/man/log_RL_progress_mt.Rd |only lazytrade-0.4.0/lazytrade/man/macd_ML2.Rd |only lazytrade-0.4.0/lazytrade/man/profit_factor.Rd |only lazytrade-0.4.0/lazytrade/man/record_policy.Rd |only lazytrade-0.4.0/lazytrade/man/record_policy_mt.Rd |only lazytrade-0.4.0/lazytrade/man/writeCommandViaCSV.Rd |only lazytrade-0.4.0/lazytrade/man/write_control_parameters.Rd |only lazytrade-0.4.0/lazytrade/man/write_control_parameters_mt.Rd |only lazytrade-0.4.0/lazytrade/tests/testthat/test-import_data_mt.R |only lazytrade-0.4.0/lazytrade/tests/testthat/test-profit_factor.R |only lazytrade-0.4.1/lazytrade/DESCRIPTION | 8 lazytrade-0.4.1/lazytrade/MD5 | 139 +- lazytrade-0.4.1/lazytrade/NAMESPACE | 22 lazytrade-0.4.1/lazytrade/NEWS.md | 18 lazytrade-0.4.1/lazytrade/R/aml_make_model.R | 14 lazytrade-0.4.1/lazytrade/R/aml_score_data.R | 6 lazytrade-0.4.1/lazytrade/R/aml_test_model.R | 23 lazytrade-0.4.1/lazytrade/R/check_if_optimize.R | 73 - lazytrade-0.4.1/lazytrade/R/create_labelled_data.R | 3 lazytrade-0.4.1/lazytrade/R/datasets.R | 2 lazytrade-0.4.1/lazytrade/R/evaluate_macroeconomic_event.R | 3 lazytrade-0.4.1/lazytrade/R/get_profit_factorDF.R | 44 lazytrade-0.4.1/lazytrade/R/import_data.R | 35 lazytrade-0.4.1/lazytrade/R/import_data_mt.R | 12 lazytrade-0.4.1/lazytrade/R/load_asset_data.R | 14 lazytrade-0.4.1/lazytrade/R/mt_evaluate.R |only lazytrade-0.4.1/lazytrade/R/mt_import_data.R |only lazytrade-0.4.1/lazytrade/R/mt_make_model.R | 44 lazytrade-0.4.1/lazytrade/R/opt_aggregate_results.R | 33 lazytrade-0.4.1/lazytrade/R/opt_create_graphs.R | 6 lazytrade-0.4.1/lazytrade/R/rl_generate_policy.R |only lazytrade-0.4.1/lazytrade/R/rl_generate_policy_mt.R |only lazytrade-0.4.1/lazytrade/R/rl_log_progress.R |only lazytrade-0.4.1/lazytrade/R/rl_log_progress_mt.R |only lazytrade-0.4.1/lazytrade/R/rl_record_policy.R |only lazytrade-0.4.1/lazytrade/R/rl_record_policy_mt.R |only lazytrade-0.4.1/lazytrade/R/rl_write_control_parameters.R |only lazytrade-0.4.1/lazytrade/R/rl_write_control_parameters_mt.R |only lazytrade-0.4.1/lazytrade/R/self_learn_ai_R.R | 6 lazytrade-0.4.1/lazytrade/R/test_model.R | 81 - lazytrade-0.4.1/lazytrade/R/util_generate_password.R | 2 lazytrade-0.4.1/lazytrade/R/util_profit_factor.R |only lazytrade-0.4.1/lazytrade/R/write_command_via_csv.R | 17 lazytrade-0.4.1/lazytrade/README.md | 35 lazytrade-0.4.1/lazytrade/data/macd_ML60M.rda |only lazytrade-0.4.1/lazytrade/inst/extdata/MarketTypeLog9139106.csv |only lazytrade-0.4.1/lazytrade/inst/extdata/MarketTypeLog9139214.csv |only lazytrade-0.4.1/lazytrade/inst/extdata/OrdersResultsT1.csv | 585 +++++++++- lazytrade-0.4.1/lazytrade/inst/extdata/Setup.csv | 11 lazytrade-0.4.1/lazytrade/man/aml_make_model.Rd | 19 lazytrade-0.4.1/lazytrade/man/aml_score_data.Rd | 6 lazytrade-0.4.1/lazytrade/man/aml_test_model.Rd | 7 lazytrade-0.4.1/lazytrade/man/check_if_optimize.Rd | 45 lazytrade-0.4.1/lazytrade/man/create_labelled_data.Rd | 1 lazytrade-0.4.1/lazytrade/man/evaluate_macroeconomic_event.Rd | 1 lazytrade-0.4.1/lazytrade/man/get_profit_factorDF.Rd | 3 lazytrade-0.4.1/lazytrade/man/import_data.Rd | 22 lazytrade-0.4.1/lazytrade/man/import_data_mt.Rd | 3 lazytrade-0.4.1/lazytrade/man/macd_ML60M.Rd |only lazytrade-0.4.1/lazytrade/man/mt_evaluate.Rd |only lazytrade-0.4.1/lazytrade/man/mt_import_data.Rd |only lazytrade-0.4.1/lazytrade/man/mt_make_model.Rd | 39 lazytrade-0.4.1/lazytrade/man/opt_aggregate_results.Rd | 18 lazytrade-0.4.1/lazytrade/man/rl_generate_policy.Rd |only lazytrade-0.4.1/lazytrade/man/rl_generate_policy_mt.Rd |only lazytrade-0.4.1/lazytrade/man/rl_log_progress.Rd |only lazytrade-0.4.1/lazytrade/man/rl_log_progress_mt.Rd |only lazytrade-0.4.1/lazytrade/man/rl_record_policy.Rd |only lazytrade-0.4.1/lazytrade/man/rl_record_policy_mt.Rd |only lazytrade-0.4.1/lazytrade/man/rl_write_control_parameters.Rd |only lazytrade-0.4.1/lazytrade/man/rl_write_control_parameters_mt.Rd |only lazytrade-0.4.1/lazytrade/man/self_learn_ai_R.Rd | 4 lazytrade-0.4.1/lazytrade/man/util_profit_factor.Rd |only lazytrade-0.4.1/lazytrade/man/write_command_via_csv.Rd | 17 lazytrade-0.4.1/lazytrade/tests/testthat/test-check_if_optimize.R |only lazytrade-0.4.1/lazytrade/tests/testthat/test-create_labelled_data.R |only lazytrade-0.4.1/lazytrade/tests/testthat/test-evaluate_macroeconomic_event.R |only lazytrade-0.4.1/lazytrade/tests/testthat/test-get_profit_factorDF.R | 6 lazytrade-0.4.1/lazytrade/tests/testthat/test-import_data.R | 10 lazytrade-0.4.1/lazytrade/tests/testthat/test-mt_import_data.R |only lazytrade-0.4.1/lazytrade/tests/testthat/test-opt_aggregate_results.R | 12 lazytrade-0.4.1/lazytrade/tests/testthat/test-util_profit_factor.R |only 100 files changed, 1032 insertions(+), 417 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-19 1.1.1
2020-01-27 1.1.0
2019-06-13 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-27 1.2
Title: Functions to Efficiently Access NFL Play by Play Data
Description: A set of functions to access National Football League play-by-play
data from <https://www.nfl.com/>.
Author: Sebastian Carl [aut],
Ben Baldwin [cre, aut],
Lee Sharpe [ctb],
Maksim Horowitz [ctb],
Ron Yurko [ctb],
Samuel Ventura [ctb]
Maintainer: Ben Baldwin <bbaldwin206@gmail.com>
Diff between nflfastR versions 3.0.0 dated 2020-09-24 and 3.1.1 dated 2020-10-22
DESCRIPTION | 18 +- MD5 | 57 +++--- NAMESPACE | 2 NEWS.md | 42 ++++ R/build_nflfastR_pbp.R |only R/helper_add_cp_cpoe.R | 4 R/helper_add_ep_wp.R | 109 ++++++++---- R/helper_add_fixed_drives.R | 8 R/helper_add_game_data.R | 2 R/helper_add_nflscrapr_mutations.R | 2 R/helper_add_series_data.R | 2 R/helper_add_xpass.R |only R/helper_add_xyac.R | 14 - R/helper_additional_functions.R | 45 ++--- R/helper_database_functions.R | 187 +++++++++++---------- R/helper_decode_player_ids.R | 95 ++++++++--- R/helper_get_scheds_and_rosters.R | 8 R/helper_scrape_nfl.R | 316 ++++++++++++++++++------------------- R/helper_tidy_play_stats.R | 2 R/top-level_scraper.R | 26 +-- R/utils.R |only README.md | 24 +- man/add_qb_epa.Rd | 6 man/add_xpass.Rd |only man/add_xyac.Rd | 4 man/build_nflfastR_pbp.Rd |only man/clean_pbp.Rd | 6 man/decode_player_ids.Rd | 45 ++++- man/fast_scraper.Rd | 7 man/update_db.Rd | 37 +++- tests/testthat/helpers.R | 1 tests/testthat/test-scrapers.R | 48 +++++ 32 files changed, 683 insertions(+), 434 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-08-20 1.1
2014-03-16 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-08-22 2.0
2017-02-05 1.0
Title: A Tool Kit for Working with Time Series in R
Description: Easy visualization, wrangling, and feature engineering of time series data for
forecasting and machine learning prediction.
Methods discussed herein are commonplace in machine learning, and have been cited
in various literature. Refer to "Calendar Effects" in papers such as
Taieb, Souhaib Ben. "Machine learning strategies for multi-step-ahead time series
forecasting." Universit Libre de Bruxelles, Belgium (2014): 75-86.
<http://souhaib-bentaieb.com/pdf/2014_phd.pdf>.
Author: Matt Dancho [aut, cre],
Davis Vaughan [aut]
Maintainer: Matt Dancho <mdancho@business-science.io>
Diff between timetk versions 2.4.0 dated 2020-10-08 and 2.5.0 dated 2020-10-22
timetk-2.4.0/timetk/inst/doc/TK05_Plotting_Seasonality_and_Correlation.R |only timetk-2.4.0/timetk/inst/doc/TK05_Plotting_Seasonality_and_Correlation.Rmd |only timetk-2.4.0/timetk/inst/doc/TK05_Plotting_Seasonality_and_Correlation.html |only timetk-2.4.0/timetk/vignettes/TK05_Plotting_Seasonality_and_Correlation.Rmd |only timetk-2.4.0/timetk/vignettes/temp/TK07_Time_Series_Data_Wrangling.Rmd |only timetk-2.5.0/timetk/DESCRIPTION | 6 timetk-2.5.0/timetk/MD5 | 33 timetk-2.5.0/timetk/NEWS.md | 12 timetk-2.5.0/timetk/R/00_global_vars.R | 2 timetk-2.5.0/timetk/R/augment-tk_augment_slidify.R | 4 timetk-2.5.0/timetk/R/dplyr-future_frame.R | 55 + timetk-2.5.0/timetk/R/rsample-time_series_cv.R | 365 ++++++---- timetk-2.5.0/timetk/R/tidyquant-theme-compat.R | 2 timetk-2.5.0/timetk/R/zzz.R | 13 timetk-2.5.0/timetk/build/vignette.rds |binary timetk-2.5.0/timetk/inst/doc/TK07_Time_Series_Data_Wrangling.R |only timetk-2.5.0/timetk/inst/doc/TK07_Time_Series_Data_Wrangling.Rmd |only timetk-2.5.0/timetk/inst/doc/TK07_Time_Series_Data_Wrangling.html |only timetk-2.5.0/timetk/man/future_frame.Rd | 28 timetk-2.5.0/timetk/man/time_series_cv.Rd | 35 timetk-2.5.0/timetk/tests/testthat/test-rsample-time_series_cv.R |only timetk-2.5.0/timetk/vignettes/TK07_Time_Series_Data_Wrangling.Rmd |only timetk-2.5.0/timetk/vignettes/temp/TK05_Plotting_Seasonality_and_Correlation.Rmd |only 23 files changed, 371 insertions(+), 184 deletions(-)
Title: Export or Graph and Tables to 'Microsoft' Office and Import
Figures and Tables
Description: Provides wrap functions to export and import graphics and
data frames in R to 'microsoft' office. And This package also
provide write out figures with lots of different formats.
Since people may work on the platform without GUI support, the package
also provide function to easily write out figures
to lots of different type of formats. Now this package provide function
to extract colors from all types of figures and pdf files.
Author: Kai Guo [aut, cre]
Maintainer: Kai Guo <guokai8@gmail.com>
Diff between eoffice versions 0.1.9 dated 2020-02-25 and 0.2.0 dated 2020-10-22
DESCRIPTION | 16 +++++---- MD5 | 16 ++++----- NAMESPACE | 3 + R/toffice.R | 83 +++++++++++++++++++++++++++++++++++++++++++------- README.md | 7 ---- build/vignette.rds |binary inst/doc/eoffice.html | 25 ++++++++++++--- man/toffice.Rd | 17 ++++++++++ man/topptx.Rd | 17 ++++++++++ 9 files changed, 147 insertions(+), 37 deletions(-)
Title: Tools to Manage a Parametric Function that Describes Phenology
and More
Description: Functions used to fit and test the phenology of species based on counts.
Author: Marc Girondot
Maintainer: Marc Girondot <marc.girondot@universite-paris-saclay.fr>
Diff between phenology versions 7.3 dated 2019-01-04 and 7.6 dated 2020-10-22
phenology-7.3/phenology/R/read_phenology.R |only phenology-7.3/phenology/man/dot-read_phenology.Rd |only phenology-7.6/phenology/DESCRIPTION | 21 phenology-7.6/phenology/MD5 | 279 +++--- phenology-7.6/phenology/NAMESPACE | 10 phenology-7.6/phenology/NEWS | 90 +- phenology-7.6/phenology/R/AutoFitPhenology.R | 2 phenology-7.6/phenology/R/BE_to_LBLE.R | 3 phenology-7.6/phenology/R/Bayesian.remigration.R |only phenology-7.6/phenology/R/CI.RMU.R |only phenology-7.6/phenology/R/Gratiot.R | 4 phenology-7.6/phenology/R/LBLE_to_BE.R | 2 phenology-7.6/phenology/R/LBLE_to_L.R | 5 phenology-7.6/phenology/R/L_to_LBLE.R | 4 phenology-7.6/phenology/R/LikelihoodRMU.R | 169 ++-- phenology-7.6/phenology/R/Likelihood_phenology.R | 114 +- phenology-7.6/phenology/R/Lnegbin.R | 635 ++++++--------- phenology-7.6/phenology/R/MarineTurtles_2002.R | 1 phenology-7.6/phenology/R/MinBMinE_to_Min.R | 2 phenology-7.6/phenology/R/Parameter_Global_Year.R |only phenology-7.6/phenology/R/RI.R |only phenology-7.6/phenology/R/Tagloss_L.R | 4 phenology-7.6/phenology/R/Tagloss_daymax.R | 2 phenology-7.6/phenology/R/Tagloss_fit.R | 8 phenology-7.6/phenology/R/Tagloss_mcmc.R |only phenology-7.6/phenology/R/adapt_parameters.R | 1 phenology-7.6/phenology/R/add_SE.R | 1 phenology-7.6/phenology/R/add_phenology.R | 589 +++++++------- phenology-7.6/phenology/R/daily_count.R | 24 phenology-7.6/phenology/R/extract_result.R | 3 phenology-7.6/phenology/R/fitRMU.R | 390 ++++----- phenology-7.6/phenology/R/fitRMU_MHmcmc.R | 27 phenology-7.6/phenology/R/fitRMU_MHmcmc_p.R | 334 ++++---- phenology-7.6/phenology/R/fit_phenology.R | 789 +++++++++---------- phenology-7.6/phenology/R/fixed.parameters0.R |only phenology-7.6/phenology/R/format_par.R | 6 phenology-7.6/phenology/R/lnRI_norm.R |only phenology-7.6/phenology/R/logLik.phenology.R | 1 phenology-7.6/phenology/R/map_Gratiot.R | 1 phenology-7.6/phenology/R/map_phenology.R | 335 ++++---- phenology-7.6/phenology/R/o_4p_p1p2.R |only phenology-7.6/phenology/R/par_init.R | 30 phenology-7.6/phenology/R/phenology-package.R | 14 phenology-7.6/phenology/R/phenology.R | 1 phenology-7.6/phenology/R/phenology2fitRMU.R |only phenology-7.6/phenology/R/phenology_MHmcmc.R | 17 phenology-7.6/phenology/R/phenology_MHmcmc_p.R | 723 +++++++++++------ phenology-7.6/phenology/R/plot.Remigration.R |only phenology-7.6/phenology/R/plot.TableECFOCF.R | 11 phenology-7.6/phenology/R/plot.Tagloss.R | 4 phenology-7.6/phenology/R/plot.fitRMU.R | 138 +-- phenology-7.6/phenology/R/plot.phenology.R | 194 +++- phenology-7.6/phenology/R/plot.phenologymap.R | 2 phenology-7.6/phenology/R/plot_delta.R | 2 phenology-7.6/phenology/R/plot_phi.R | 4 phenology-7.6/phenology/R/print.phenology.R | 6 phenology-7.6/phenology/R/print.phenologymap.R | 4 phenology-7.6/phenology/R/print.phenologyout.R | 8 phenology-7.6/phenology/R/remove_site.R | 4 phenology-7.6/phenology/R/result_Gratiot.R | 1 phenology-7.6/phenology/R/result_Gratiot1.R | 1 phenology-7.6/phenology/R/result_Gratiot2.R | 1 phenology-7.6/phenology/R/result_Gratiot_Flat.R | 1 phenology-7.6/phenology/R/result_Gratiot_mcmc.R | 1 phenology-7.6/phenology/R/shift_sinusoid.R | 3 phenology-7.6/phenology/R/summary.phenology.R | 665 ++++++++-------- phenology-7.6/phenology/R/summary.phenologymap.R | 4 phenology-7.6/phenology/R/summary.phenologyout.R | 2 phenology-7.6/phenology/R/toggle_Min_PMin.R | 1 phenology-7.6/phenology/data/Gratiot.rda |binary phenology-7.6/phenology/data/o_4p_p1p2.rda |only phenology-7.6/phenology/data/result_Gratiot.rda |binary phenology-7.6/phenology/inst/shiny/server.R | 6 phenology-7.6/phenology/man/AutoFitPhenology.Rd | 49 + phenology-7.6/phenology/man/BE_to_LBLE.Rd | 43 - phenology-7.6/phenology/man/Bayesian.remigration.Rd |only phenology-7.6/phenology/man/CI.RMU.Rd |only phenology-7.6/phenology/man/ECFOCF_f.Rd | 24 phenology-7.6/phenology/man/Gratiot.Rd | 48 + phenology-7.6/phenology/man/IPFit.Rd | 36 phenology-7.6/phenology/man/IPModel.Rd | 17 phenology-7.6/phenology/man/IPPredict.Rd | 8 phenology-7.6/phenology/man/LBLE_to_BE.Rd | 42 - phenology-7.6/phenology/man/LBLE_to_L.Rd | 45 - phenology-7.6/phenology/man/L_to_LBLE.Rd | 44 - phenology-7.6/phenology/man/LnRI_norm.Rd |only phenology-7.6/phenology/man/MarineTurtles_2002.Rd | 47 + phenology-7.6/phenology/man/MinBMinE_to_Min.Rd | 45 + phenology-7.6/phenology/man/Parameter_Global_Year.Rd |only phenology-7.6/phenology/man/RI.Rd |only phenology-7.6/phenology/man/TableECFOCF.Rd | 26 phenology-7.6/phenology/man/Tagloss_L.Rd | 38 phenology-7.6/phenology/man/Tagloss_LengthObs.Rd | 22 phenology-7.6/phenology/man/Tagloss_cumul.Rd | 33 phenology-7.6/phenology/man/Tagloss_daymax.Rd | 21 phenology-7.6/phenology/man/Tagloss_fit.Rd | 52 - phenology-7.6/phenology/man/Tagloss_format.Rd | 21 phenology-7.6/phenology/man/Tagloss_mcmc.Rd |only phenology-7.6/phenology/man/Tagloss_model.Rd | 33 phenology-7.6/phenology/man/Tagloss_simulate.Rd | 36 phenology-7.6/phenology/man/adapt_parameters.Rd | 47 + phenology-7.6/phenology/man/add_SE.Rd | 41 phenology-7.6/phenology/man/add_phenology.Rd | 144 ++- phenology-7.6/phenology/man/extract_result.Rd | 43 - phenology-7.6/phenology/man/fitCF.Rd | 25 phenology-7.6/phenology/man/fitRMU.Rd | 121 ++ phenology-7.6/phenology/man/fitRMU_MHmcmc.Rd | 40 phenology-7.6/phenology/man/fitRMU_MHmcmc_p.Rd | 19 phenology-7.6/phenology/man/fit_phenology.Rd | 118 ++ phenology-7.6/phenology/man/fixed.parameters0.Rd |only phenology-7.6/phenology/man/likelihood_phenology.Rd | 67 + phenology-7.6/phenology/man/lnLCF.Rd | 14 phenology-7.6/phenology/man/logLik.ECFOCF.Rd | 11 phenology-7.6/phenology/man/logLik.Tagloss.Rd | 21 phenology-7.6/phenology/man/logLik.fitRMU.Rd | 9 phenology-7.6/phenology/man/logLik.phenology.Rd | 41 phenology-7.6/phenology/man/map_Gratiot.Rd | 45 + phenology-7.6/phenology/man/map_phenology.Rd | 104 +- phenology-7.6/phenology/man/o_4p_p1p2.Rd |only phenology-7.6/phenology/man/outLR.Rd | 4 phenology-7.6/phenology/man/par_init.Rd | 77 + phenology-7.6/phenology/man/phenology-package.Rd | 15 phenology-7.6/phenology/man/phenology.Rd | 41 phenology-7.6/phenology/man/phenology2fitRMU.Rd |only phenology-7.6/phenology/man/phenology_MHmcmc.Rd | 67 + phenology-7.6/phenology/man/phenology_MHmcmc_p.Rd | 53 + phenology-7.6/phenology/man/plot.ECFOCF.Rd | 14 phenology-7.6/phenology/man/plot.IP.Rd | 8 phenology-7.6/phenology/man/plot.Remigration.Rd |only phenology-7.6/phenology/man/plot.TableECFOCF.Rd | 37 phenology-7.6/phenology/man/plot.Tagloss.Rd | 51 - phenology-7.6/phenology/man/plot.TaglossData.Rd | 33 phenology-7.6/phenology/man/plot.fitRMU.Rd | 40 phenology-7.6/phenology/man/plot.phenology.Rd | 88 +- phenology-7.6/phenology/man/plot.phenologymap.Rd | 45 + phenology-7.6/phenology/man/plot_delta.Rd | 42 - phenology-7.6/phenology/man/plot_phi.Rd | 44 - phenology-7.6/phenology/man/print.phenology.Rd | 46 + phenology-7.6/phenology/man/print.phenologymap.Rd | 44 - phenology-7.6/phenology/man/print.phenologyout.Rd | 46 + phenology-7.6/phenology/man/remove_site.Rd | 44 - phenology-7.6/phenology/man/result_Gratiot.Rd | 45 + phenology-7.6/phenology/man/result_Gratiot1.Rd | 45 + phenology-7.6/phenology/man/result_Gratiot2.Rd | 45 + phenology-7.6/phenology/man/result_Gratiot_Flat.Rd | 45 + phenology-7.6/phenology/man/result_Gratiot_mcmc.Rd | 45 + phenology-7.6/phenology/man/shift_sinusoid.Rd | 3 phenology-7.6/phenology/man/summary.IP.Rd | 8 phenology-7.6/phenology/man/summary.phenology.Rd | 58 + phenology-7.6/phenology/man/summary.phenologymap.Rd | 44 - phenology-7.6/phenology/man/summary.phenologyout.Rd | 42 - phenology-7.6/phenology/man/toggle_Min_PMin.Rd | 4 152 files changed, 5554 insertions(+), 3013 deletions(-)
Title: Tools to Analyze the Thermal Reaction Norm of Embryo Growth
Description: Tools to analyze the embryo growth and the sexualisation thermal reaction norms.
Author: Marc Girondot <marc.girondot@universite-paris-saclay.fr>
Maintainer: Marc Girondot <marc.girondot@universite-paris-saclay.fr>
Diff between embryogrowth versions 7.6 dated 2019-08-30 and 8.0 dated 2020-10-22
embryogrowth-7.6/embryogrowth/data/datalist |only embryogrowth-8.0/embryogrowth/DESCRIPTION | 18 embryogrowth-8.0/embryogrowth/MD5 | 179 +- embryogrowth-8.0/embryogrowth/NAMESPACE | 2 embryogrowth-8.0/embryogrowth/NEWS | 29 embryogrowth-8.0/embryogrowth/R/DatabaseTSD.R | 5 embryogrowth-8.0/embryogrowth/R/DatabaseTSD.version.R |only embryogrowth-8.0/embryogrowth/R/HatchingSuccess.MHmcmc_p.R | 40 embryogrowth-8.0/embryogrowth/R/HatchingSuccess.fit.R | 98 + embryogrowth-8.0/embryogrowth/R/HatchingSuccess.lnL.R | 8 embryogrowth-8.0/embryogrowth/R/HatchingSuccess.model.R | 26 embryogrowth-8.0/embryogrowth/R/HatchingSuccess.predict.R | 21 embryogrowth-8.0/embryogrowth/R/MovingIncubation.R | 243 ++- embryogrowth-8.0/embryogrowth/R/P_TRT.R | 319 ++++- embryogrowth-8.0/embryogrowth/R/STRN.R | 32 embryogrowth-8.0/embryogrowth/R/STRN_MHmcmc.R | 6 embryogrowth-8.0/embryogrowth/R/STRN_fit.R | 2 embryogrowth-8.0/embryogrowth/R/embryogrowth-package.R | 6 embryogrowth-8.0/embryogrowth/R/fonctionSTRNMCMC.R | 3 embryogrowth-8.0/embryogrowth/R/info.nests.R | 626 ++++++---- embryogrowth-8.0/embryogrowth/R/modelTSD.R | 18 embryogrowth-8.0/embryogrowth/R/movement.R |only embryogrowth-8.0/embryogrowth/R/plot.HatchingSuccess.R | 100 + embryogrowth-8.0/embryogrowth/R/plot.NestsResult.R | 34 embryogrowth-8.0/embryogrowth/R/plot.tsd.R | 42 embryogrowth-8.0/embryogrowth/R/plotR.R | 270 ++-- embryogrowth-8.0/embryogrowth/R/predict.tsd.R | 2 embryogrowth-8.0/embryogrowth/R/searchR.R | 1 embryogrowth-8.0/embryogrowth/R/tsd.R | 191 ++- embryogrowth-8.0/embryogrowth/R/tsd_MHmcmc_p.R | 12 embryogrowth-8.0/embryogrowth/data/DatabaseNestingArea.rda |binary embryogrowth-8.0/embryogrowth/data/DatabaseTSD.rda |binary embryogrowth-8.0/embryogrowth/data/TSP.list.rda |binary embryogrowth-8.0/embryogrowth/data/stages.rda |binary embryogrowth-8.0/embryogrowth/inst/shiny/ui.R | 2 embryogrowth-8.0/embryogrowth/man/ChangeSSM.Rd | 15 embryogrowth-8.0/embryogrowth/man/DatabaseNestingArea.Rd | 4 embryogrowth-8.0/embryogrowth/man/DatabaseTSD.Rd | 27 embryogrowth-8.0/embryogrowth/man/DatabaseTSD.version.Rd |only embryogrowth-8.0/embryogrowth/man/FormatNests.Rd | 8 embryogrowth-8.0/embryogrowth/man/GRTRN_MHmcmc.Rd | 23 embryogrowth-8.0/embryogrowth/man/GenerateAnchor.Rd | 8 embryogrowth-8.0/embryogrowth/man/GenerateConstInc.Rd | 7 embryogrowth-8.0/embryogrowth/man/GenerateTest.Rd | 8 embryogrowth-8.0/embryogrowth/man/HatchingSuccess.MHmcmc.Rd | 40 embryogrowth-8.0/embryogrowth/man/HatchingSuccess.MHmcmc_p.Rd | 27 embryogrowth-8.0/embryogrowth/man/HatchingSuccess.fit.Rd | 74 - embryogrowth-8.0/embryogrowth/man/HatchingSuccess.lnL.Rd | 28 embryogrowth-8.0/embryogrowth/man/HatchingSuccess.model.Rd | 19 embryogrowth-8.0/embryogrowth/man/MovingIncubation.Rd | 43 embryogrowth-8.0/embryogrowth/man/P_TRT.Rd | 41 embryogrowth-8.0/embryogrowth/man/STRN.Rd | 46 embryogrowth-8.0/embryogrowth/man/STRN_MHmcmc.Rd | 32 embryogrowth-8.0/embryogrowth/man/TRN_MHmcmc_p.Rd | 8 embryogrowth-8.0/embryogrowth/man/TSP.list.Rd | 19 embryogrowth-8.0/embryogrowth/man/calibrate.datalogger.Rd | 13 embryogrowth-8.0/embryogrowth/man/embryogrowth-package.Rd | 8 embryogrowth-8.0/embryogrowth/man/info.nests.Rd | 150 +- embryogrowth-8.0/embryogrowth/man/likelihoodR.Rd | 17 embryogrowth-8.0/embryogrowth/man/logLik.HatchingSuccess.Rd | 17 embryogrowth-8.0/embryogrowth/man/movement.Rd |only embryogrowth-8.0/embryogrowth/man/nest.Rd | 4 embryogrowth-8.0/embryogrowth/man/nobs.HatchingSuccess.Rd | 17 embryogrowth-8.0/embryogrowth/man/plot.HatchingSuccess.Rd | 70 - embryogrowth-8.0/embryogrowth/man/plot.NestsResult.Rd | 84 - embryogrowth-8.0/embryogrowth/man/plot.tsd.Rd | 47 embryogrowth-8.0/embryogrowth/man/plotR.Rd | 56 embryogrowth-8.0/embryogrowth/man/plot_transition.Rd | 3 embryogrowth-8.0/embryogrowth/man/predict.HatchingSuccess.Rd | 36 embryogrowth-8.0/embryogrowth/man/predict.tsd.Rd | 32 embryogrowth-8.0/embryogrowth/man/resultNest_3p_Dallwitz.Rd | 4 embryogrowth-8.0/embryogrowth/man/resultNest_3p_Weibull.Rd | 4 embryogrowth-8.0/embryogrowth/man/resultNest_4p_SSM.Rd | 4 embryogrowth-8.0/embryogrowth/man/resultNest_4p_SSM4p.Rd | 4 embryogrowth-8.0/embryogrowth/man/resultNest_4p_normal.Rd | 4 embryogrowth-8.0/embryogrowth/man/resultNest_4p_transition.Rd | 4 embryogrowth-8.0/embryogrowth/man/resultNest_4p_trigo.Rd | 4 embryogrowth-8.0/embryogrowth/man/resultNest_4p_weight.Rd | 4 embryogrowth-8.0/embryogrowth/man/resultNest_5p_Dallwitz.Rd | 4 embryogrowth-8.0/embryogrowth/man/resultNest_6p_SSM.Rd | 4 embryogrowth-8.0/embryogrowth/man/resultNest_6p_SSM6p.Rd | 4 embryogrowth-8.0/embryogrowth/man/resultNest_mcmc_4p_SSM4p.Rd | 4 embryogrowth-8.0/embryogrowth/man/resultNest_newp.Rd | 4 embryogrowth-8.0/embryogrowth/man/result_mcmc_newp.Rd | 4 embryogrowth-8.0/embryogrowth/man/searchR.Rd | 15 embryogrowth-8.0/embryogrowth/man/stages.Rd | 19 embryogrowth-8.0/embryogrowth/man/switch.transition.Rd | 3 embryogrowth-8.0/embryogrowth/man/tempConst.Rd | 4 embryogrowth-8.0/embryogrowth/man/tsd.Rd | 130 +- embryogrowth-8.0/embryogrowth/man/tsd_MHmcmc.Rd | 37 embryogrowth-8.0/embryogrowth/man/tsd_MHmcmc_p.Rd | 21 embryogrowth-8.0/embryogrowth/man/uncertainty.datalogger.Rd | 15 embryogrowth-8.0/embryogrowth/man/weightmaxentropy.Rd | 16 93 files changed, 2576 insertions(+), 1106 deletions(-)
Title: Understand and Describe Bayesian Models and Posterior
Distributions
Description: Provides utilities to describe posterior distributions and Bayesian models. It includes point-estimates such as Maximum A Posteriori (MAP), measures of dispersion (Highest Density Interval - HDI; Kruschke, 2015 <doi:10.1016/C2012-0-00477-2>) and indices used for null-hypothesis testing (such as ROPE percentage, pd and Bayes factors).
Author: Dominique Makowski [aut, cre] (<https://orcid.org/0000-0001-5375-9967>),
Daniel Lüdecke [aut] (<https://orcid.org/0000-0002-8895-3206>),
Mattan S. Ben-Shachar [aut] (<https://orcid.org/0000-0002-4287-4801>),
Michael D. Wilson [aut] (<https://orcid.org/0000-0003-4143-7308>),
Paul-Christian Bürkner [rev],
Tristan Mahr [rev] (<https://orcid.org/0000-0002-8890-5116>),
Henrik Singmann [ctb] (<https://orcid.org/0000-0002-4842-3657>),
Quentin F. Gronau [ctb] (<https://orcid.org/0000-0001-5510-6943>),
Sam Crawley [ctb] (<https://orcid.org/0000-0002-7847-0411>)
Maintainer: Dominique Makowski <dom.makowski@gmail.com>
Diff between bayestestR versions 0.7.2 dated 2020-07-20 and 0.7.5 dated 2020-10-22
bayestestR-0.7.2/bayestestR/R/utils_clean_emmeans_draws.R |only bayestestR-0.7.5/bayestestR/DESCRIPTION | 28 bayestestR-0.7.5/bayestestR/MD5 | 186 +++--- bayestestR-0.7.5/bayestestR/NAMESPACE | 28 bayestestR-0.7.5/bayestestR/NEWS.md | 21 bayestestR-0.7.5/bayestestR/R/bayesfactor_models.R | 35 - bayestestR-0.7.5/bayestestR/R/bayesfactor_parameters.R | 5 bayestestR-0.7.5/bayestestR/R/bayesfactor_restricted.R | 3 bayestestR-0.7.5/bayestestR/R/check_prior.R | 5 bayestestR-0.7.5/bayestestR/R/ci.R | 22 bayestestR-0.7.5/bayestestR/R/convert_bayesian_to_frequentist.R | 6 bayestestR-0.7.5/bayestestR/R/convert_pd_to_p.R | 2 bayestestR-0.7.5/bayestestR/R/describe_posterior.R | 65 +- bayestestR-0.7.5/bayestestR/R/diagnostic_posterior.R | 67 +- bayestestR-0.7.5/bayestestR/R/distribution.R | 186 +++--- bayestestR-0.7.5/bayestestR/R/effective_sample.R | 2 bayestestR-0.7.5/bayestestR/R/equivalence_test.R | 5 bayestestR-0.7.5/bayestestR/R/estimate_density.R | 7 bayestestR-0.7.5/bayestestR/R/eti.R | 9 bayestestR-0.7.5/bayestestR/R/hdi.R | 9 bayestestR-0.7.5/bayestestR/R/map_estimate.R | 6 bayestestR-0.7.5/bayestestR/R/mcse.R | 16 bayestestR-0.7.5/bayestestR/R/mediation.R | 20 bayestestR-0.7.5/bayestestR/R/mhdior.R | 9 bayestestR-0.7.5/bayestestR/R/p_direction.R | 33 - bayestestR-0.7.5/bayestestR/R/p_map.R | 9 bayestestR-0.7.5/bayestestR/R/p_rope.R | 11 bayestestR-0.7.5/bayestestR/R/p_significance.R | 15 bayestestR-0.7.5/bayestestR/R/point_estimate.R | 11 bayestestR-0.7.5/bayestestR/R/print.bayesfactor_models.R | 33 + bayestestR-0.7.5/bayestestR/R/print.describe_posterior.R | 4 bayestestR-0.7.5/bayestestR/R/rope.R | 10 bayestestR-0.7.5/bayestestR/R/rope_range.R | 34 + bayestestR-0.7.5/bayestestR/R/si.R | 6 bayestestR-0.7.5/bayestestR/R/simulate_priors.R | 3 bayestestR-0.7.5/bayestestR/R/unupdate.R |only bayestestR-0.7.5/bayestestR/R/update.bayesfactor_models.R | 24 bayestestR-0.7.5/bayestestR/R/utils.R | 39 + bayestestR-0.7.5/bayestestR/R/utils_bayesfactor.R | 156 ++--- bayestestR-0.7.5/bayestestR/R/utils_check_collinearity.R | 84 +- bayestestR-0.7.5/bayestestR/R/utils_print_data_frame.R | 2 bayestestR-0.7.5/bayestestR/R/weighted_posteriors.R | 4 bayestestR-0.7.5/bayestestR/README.md | 87 +- bayestestR-0.7.5/bayestestR/build/partial.rdb |binary bayestestR-0.7.5/bayestestR/build/vignette.rds |binary bayestestR-0.7.5/bayestestR/inst/doc/bayes_factors.R | 17 bayestestR-0.7.5/bayestestR/inst/doc/bayes_factors.Rmd | 39 - bayestestR-0.7.5/bayestestR/inst/doc/bayes_factors.html | 296 +++++----- bayestestR-0.7.5/bayestestR/inst/doc/example1.Rmd | 2 bayestestR-0.7.5/bayestestR/inst/doc/example1.html | 10 bayestestR-0.7.5/bayestestR/inst/doc/example2.Rmd | 4 bayestestR-0.7.5/bayestestR/inst/doc/example2.html | 18 bayestestR-0.7.5/bayestestR/inst/doc/guidelines.Rmd | 2 bayestestR-0.7.5/bayestestR/inst/doc/guidelines.html | 2 bayestestR-0.7.5/bayestestR/inst/doc/mediation.R |only bayestestR-0.7.5/bayestestR/inst/doc/mediation.Rmd |only bayestestR-0.7.5/bayestestR/inst/doc/mediation.html |only bayestestR-0.7.5/bayestestR/inst/doc/probability_of_direction.R | 15 bayestestR-0.7.5/bayestestR/inst/doc/probability_of_direction.Rmd | 5 bayestestR-0.7.5/bayestestR/inst/doc/region_of_practical_equivalence.R | 14 bayestestR-0.7.5/bayestestR/inst/doc/region_of_practical_equivalence.html | 4 bayestestR-0.7.5/bayestestR/man/bayesfactor_models.Rd | 32 - bayestestR-0.7.5/bayestestR/man/check_prior.Rd | 85 +- bayestestR-0.7.5/bayestestR/man/ci.Rd | 3 bayestestR-0.7.5/bayestestR/man/convert_bayesian_as_frequentist.Rd | 100 +-- bayestestR-0.7.5/bayestestR/man/diagnostic_posterior.Rd | 9 bayestestR-0.7.5/bayestestR/man/distribution.Rd | 88 +- bayestestR-0.7.5/bayestestR/man/figures/unnamed-chunk-10-1.png |binary bayestestR-0.7.5/bayestestR/man/figures/unnamed-chunk-12-1.png |binary bayestestR-0.7.5/bayestestR/man/figures/unnamed-chunk-14-1.png |binary bayestestR-0.7.5/bayestestR/man/figures/unnamed-chunk-16-1.png |binary bayestestR-0.7.5/bayestestR/man/p_direction.Rd | 23 bayestestR-0.7.5/bayestestR/man/simulate_prior.Rd | 58 + bayestestR-0.7.5/bayestestR/man/unupdate.Rd |only bayestestR-0.7.5/bayestestR/man/update.bayesfactor_models.Rd | 76 +- bayestestR-0.7.5/bayestestR/man/weighted_posteriors.Rd | 5 bayestestR-0.7.5/bayestestR/tests/testthat/test-BFBayesFactor.R | 36 - bayestestR-0.7.5/bayestestR/tests/testthat/test-bayesfactor_models.R | 6 bayestestR-0.7.5/bayestestR/tests/testthat/test-bayesfactor_parameters.R | 32 - bayestestR-0.7.5/bayestestR/tests/testthat/test-bayesfactor_restricted.R | 2 bayestestR-0.7.5/bayestestR/tests/testthat/test-brms.R | 55 + bayestestR-0.7.5/bayestestR/tests/testthat/test-ci.R | 4 bayestestR-0.7.5/bayestestR/tests/testthat/test-describe_posterior.R | 23 bayestestR-0.7.5/bayestestR/tests/testthat/test-effective_sample.R |only bayestestR-0.7.5/bayestestR/tests/testthat/test-emmGrid.R | 208 ++++--- bayestestR-0.7.5/bayestestR/tests/testthat/test-hdi.R | 4 bayestestR-0.7.5/bayestestR/tests/testthat/test-p_direction.R | 4 bayestestR-0.7.5/bayestestR/tests/testthat/test-p_map.R | 4 bayestestR-0.7.5/bayestestR/tests/testthat/test-p_significance.R | 8 bayestestR-0.7.5/bayestestR/tests/testthat/test-rope.R | 12 bayestestR-0.7.5/bayestestR/tests/testthat/test-rstanarm.R | 65 ++ bayestestR-0.7.5/bayestestR/tests/testthat/test-weighted_posteriors.R | 69 +- bayestestR-0.7.5/bayestestR/vignettes/bayes_factors.Rmd | 39 - bayestestR-0.7.5/bayestestR/vignettes/example1.Rmd | 2 bayestestR-0.7.5/bayestestR/vignettes/example2.Rmd | 4 bayestestR-0.7.5/bayestestR/vignettes/guidelines.Rmd | 2 bayestestR-0.7.5/bayestestR/vignettes/mediation.Rmd |only bayestestR-0.7.5/bayestestR/vignettes/probability_of_direction.Rmd | 5 98 files changed, 1724 insertions(+), 1074 deletions(-)
Title: Data Language Engine for 'knitr' / 'rmarkdown'
Description: Implements a data language engine for incorporating data directly in
'rmarkdown' documents so that they can be made completely standalone.
Author: David M. Kaplan [aut, cre, cph]
(<https://orcid.org/0000-0001-6087-359X>, dmkaplan2000)
Maintainer: David M. Kaplan <dmkaplan2000@gmail.com>
Diff between knitrdata versions 0.5.0 dated 2020-07-15 and 0.5.1 dated 2020-10-22
DESCRIPTION | 8 - MD5 | 18 +- NEWS.md | 7 + R/data_engine.R | 110 +++++++++++------ build/vignette.rds |binary inst/doc/data_language_engine_vignette.Rmd | 14 +- inst/doc/data_language_engine_vignette.html | 155 ++++++++++++++++++++----- inst/examples/example_data_language_engine.Rmd | 2 man/data_decode.Rd | 79 +++++++----- vignettes/data_language_engine_vignette.Rmd | 14 +- 10 files changed, 278 insertions(+), 129 deletions(-)
Title: Generate Standardized Data
Description: Creates simulated data from structural equation models with standardized loading. Data generation methods are described in Schneider (2013) <doi:10.1177/0734282913478046>.
Author: W. Joel Schneider [aut, cre] (<https://orcid.org/0000-0002-8393-5316>)
Maintainer: W. Joel Schneider <w.joel.schneider@gmail.com>
Diff between simstandard versions 0.3.0 dated 2019-01-07 and 0.5.0 dated 2020-10-22
simstandard-0.3.0/simstandard/vignettes/ModelFigure.pdf |only simstandard-0.3.0/simstandard/vignettes/ModelFigure.tex |only simstandard-0.3.0/simstandard/vignettes/ModelFigureComplete.pdf |only simstandard-0.3.0/simstandard/vignettes/ModelFigureComplete.tex |only simstandard-0.5.0/simstandard/DESCRIPTION | 17 simstandard-0.5.0/simstandard/MD5 | 43 simstandard-0.5.0/simstandard/NAMESPACE | 1 simstandard-0.5.0/simstandard/NEWS.md | 27 simstandard-0.5.0/simstandard/R/main.R | 137 simstandard-0.5.0/simstandard/README.md | 22 simstandard-0.5.0/simstandard/build/vignette.rds |binary simstandard-0.5.0/simstandard/inst/doc/simstandard_tutorial.R | 110 simstandard-0.5.0/simstandard/inst/doc/simstandard_tutorial.Rmd | 102 simstandard-0.5.0/simstandard/inst/doc/simstandard_tutorial.html | 2143 +++------- simstandard-0.5.0/simstandard/man/add_composite_scores.Rd |only simstandard-0.5.0/simstandard/man/add_factor_scores.Rd | 82 simstandard-0.5.0/simstandard/man/fixed2free.Rd | 56 simstandard-0.5.0/simstandard/man/lav2ram.Rd | 4 simstandard-0.5.0/simstandard/man/matrix2lavaan.Rd | 127 simstandard-0.5.0/simstandard/man/model_complete.Rd | 58 simstandard-0.5.0/simstandard/man/sim_standardized.Rd | 100 simstandard-0.5.0/simstandard/man/sim_standardized_matrices.Rd | 63 simstandard-0.5.0/simstandard/tests/testthat/testthat.R | 221 + simstandard-0.5.0/simstandard/vignettes/VignetteStyle.css | 19 simstandard-0.5.0/simstandard/vignettes/simstandard_tutorial.Rmd | 102 25 files changed, 1649 insertions(+), 1785 deletions(-)
Title: Hierarchical Bayesian Analysis of North American BBS Data
Description: The North American Breeding Bird Survey (BBS) is a long-running
program that seeks to monitor the status and trends of the breeding birds in
North America. Since its start in 1966, the BBS has accumulated over 50 years
of data for over 500 species of North American Birds. Given the temporal and
spatial structure of the data, hierarchical Bayesian models are used to assess
the status and trends of these 500+ species of birds. 'bbsBayes' allows you to perform
hierarchical Bayesian analysis of BBS data. You can run a full
model analysis for one or more species that you choose, or you can take
more control and specify how the data should be stratified, prepared
for 'JAGS', or modelled. The functions provided here allow you to replicate
analyses performed by the United State Geological Survey (USGS, see Link
and Sauer (2011) <doi:10.1525/auk.2010.09220>) and Canadian Wildlife Service
(CWS, see Smith and Edwards (2020) <doi:10.1101/2020.03.26.010215>).
Author: Brandon P.M. Edwards [aut, cre],
Adam C. Smith [aut]
Maintainer: Brandon P.M. Edwards <edwardsb@uoguelph.ca>
Diff between bbsBayes versions 2.3.3.2020 dated 2020-07-08 and 2.3.4.2020 dated 2020-10-22
DESCRIPTION | 10 +-- MD5 | 30 ++++----- R/fetch-bbs-data.R | 8 +- man/bbsBayes-deprecated.Rd | 136 +++++++++++++++++++++------------------------ man/bird_sample.Rd | 6 + man/generate_indices.Rd | 14 +++- man/generate_map.Rd | 9 ++ man/generate_trends.Rd | 12 ++- man/geofacet_plot.Rd | 15 +++- man/plot_indices.Rd | 16 +++-- man/prepare_jags_data.Rd | 20 ++++-- man/r_hat.Rd | 2 man/route_sample.Rd | 6 + man/run_model.Rd | 22 +++++-- man/species_sample.Rd | 6 + man/stratify.Rd | 10 ++- 16 files changed, 190 insertions(+), 132 deletions(-)
Title: A Toolbox for Multivariate Meta-Analysis
Description: A toolbox for meta-analysis. This package includes a collection of functions for (1) implementing robust multivariate meta-analysis of continuous or binary outcomes; and (2) a bivariate Egger's test for detecting small study effects.
Author: Chuan Hong [aut],
Chongliang Luo [aut],
Rui Duan [aut],
Jiayi Tong [aut, cre],
Haitao Chu [ctb],
Yulun Liu [ctb],
Yong Chen [aut]
Maintainer: Jiayi Tong <Jiayi.Tong@pennmedicine.upenn.edu>
Diff between xmeta versions 1.1-5 dated 2019-11-01 and 1.2-1 dated 2020-10-22
DESCRIPTION | 38 +++-- MD5 | 26 ++- NAMESPACE | 8 - R/galaxy.R |only R/galaxy.trimfill.R |only R/mmeta.R | 22 ++ data/sim_dat.rda |only man/ca125.Rd | 91 ++++++------ man/dat.gen.Rd |only man/galaxy.Rd |only man/galaxy.trimfill.Rd |only man/mmeta.Rd | 367 ++++++++++++++++++++++++------------------------- man/msset.Rd | 2 man/sim_dat.Rd |only man/summary.mmeta.rd | 4 man/summary.msset.rd | 2 man/trimfill.rma.Rd |only man/xmeta-package.Rd | 7 18 files changed, 308 insertions(+), 259 deletions(-)
Title: Efficient Network Enrichment Analysis Test
Description: Includes functions and examples to compute NEAT, the Network Enrichment Analysis Test described in Signorelli et al. (2016, <DOI:10.1186/s12859-016-1203-6>).
Author: Mirko Signorelli [aut, cre, cph]
(<https://orcid.org/0000-0002-8102-3356>),
Veronica Vinciotti [aut],
Ernst Wit [aut]
Maintainer: Mirko Signorelli <msignorelli.rpackages@gmail.com>
Diff between neat versions 1.2.1 dated 2020-01-09 and 1.2.2 dated 2020-10-22
DESCRIPTION | 31 ++++++++++++++++++++++--------- MD5 | 8 ++++---- build/vignette.rds |binary data/yeast.RData |binary inst/NEWS.md | 11 +++++++++++ 5 files changed, 37 insertions(+), 13 deletions(-)
Title: Gene Set Enrichment Analysis via Integration of Metabolic
Networks and RNA-Seq Data
Description: Integrates metabolic networks and RNA-seq data to construct condition-specific series of metabolic sub-networks and applies to gene set enrichment analysis (Tran et al. (2018) <doi:10.1093/bioinformatics/bty929>).
Author: Van Du T. Tran [aut, cre], Marco Pagni [aut]
Maintainer: Van Du T. Tran <thuong.tran@sib.swiss>
Diff between metaboGSE versions 1.2.4 dated 2020-05-07 and 1.2.5 dated 2020-10-22
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/metaboGSE.R | 2 ++ inst/doc/metaboGSE.pdf |binary man/metaboGSE.Rd | 2 ++ 5 files changed, 11 insertions(+), 7 deletions(-)
Title: Interface to the 'Open Tree of Life' API
Description: An interface to the 'Open Tree of Life' API to retrieve
phylogenetic trees, information about studies used to assemble the
synthetic tree, and utilities to match taxonomic names to 'Open Tree
identifiers'. The 'Open Tree of Life' aims at assembling a
comprehensive phylogenetic tree for all named species.
Author: Francois Michonneau [aut, cre]
(<https://orcid.org/0000-0002-9092-966X>),
Joseph Brown [aut] (<https://orcid.org/0000-0002-3835-8062>),
David Winter [aut] (<https://orcid.org/0000-0002-6165-0029>),
Scott Chamberlain [rev] (<https://orcid.org/0000-0003-1444-9135>)
Maintainer: Francois Michonneau <francois.michonneau@gmail.com>
Diff between rotl versions 3.0.10 dated 2019-09-28 and 3.0.11 dated 2020-10-22
DESCRIPTION | 10 MD5 | 58 +-- NAMESPACE | 2 NEWS.md | 14 R/rotl-package.R | 2 R/studies.R | 10 R/taxonomy.R | 2 R/tnrs.R | 96 +++-- README.md | 73 ++-- build/vignette.rds |binary inst/CITATION | 54 +-- inst/doc/data_mashups.R | 30 - inst/doc/data_mashups.html | 671 ++++++++++++++++++++------------------ inst/doc/meta-analysis.R | 28 - inst/doc/meta-analysis.html | 402 +++++++++++++--------- inst/doc/rotl.R | 32 - inst/doc/rotl.html | 603 ++++++++++++++++++++-------------- man/get_study.Rd | 2 man/get_study_meta.Rd | 4 man/get_study_subtree.Rd | 2 man/get_study_tree.Rd | 2 man/list_trees.Rd | 4 man/rotl.Rd | 2 man/studies_find_trees.Rd | 4 man/taxonomy_subtree.Rd | 2 man/tol_node_info.Rd | 10 tests/testthat/test-API.R | 2 tests/testthat/test-match_names.R | 9 tests/testthat/test-taxonomy.R | 20 - tests/testthat/test-tnrs.R | 10 30 files changed, 1225 insertions(+), 935 deletions(-)
Title: Use Open Data from the Czech Statistical Office in R
Description: Get programmatic access to the open data provided by the
Czech Statistical Office (CZSO, <https://czso.cz>).
Author: Petr Bouchal [aut, cre] (<https://orcid.org/0000-0002-0471-716X>),
Jindra Lacko [ctb]
Maintainer: Petr Bouchal <pbouchal@gmail.com>
Diff between czso versions 0.2.3 dated 2020-04-07 and 0.3.2 dated 2020-10-22
DESCRIPTION | 25 ++- MD5 | 34 ++-- NAMESPACE | 2 NEWS.md | 30 ++++ R/core.R | 275 ++++++++++++++++++++++++++++++++------- R/czso-package.R | 1 README.md | 77 ++++++++-- build/czso.pdf |binary man/czso-package.Rd | 5 man/czso_get_codelist.Rd |only man/czso_get_table.Rd | 20 ++ man/figures/card.png |only man/get_catalogue.Rd | 2 man/get_czso_catalogue.Rd | 2 man/get_czso_dataset_doc.Rd | 2 man/get_czso_dataset_metadata.Rd | 2 man/get_czso_table_schema.Rd | 2 man/get_table.Rd | 4 tests |only 19 files changed, 385 insertions(+), 98 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-03 2.0.2
2020-08-24 2.0.1
Title: Who are You? Bayesian Prediction of Racial Category Using
Surname and Geolocation
Description: Predicts individual race/ethnicity using surname, geolocation,
and other attributes, such as gender and age. The method utilizes the Bayes'
Rule to compute the posterior probability of each racial category for any given
individual. The package implements methods described in Imai and Khanna (2015)
"Improving Ecological Inference by Predicting Individual Ethnicity from Voter
Registration Records" <DOI:10.1093/pan/mpw001>.
Author: Kabir Khanna [aut, cre],
Kosuke Imai [aut]
Maintainer: Kabir Khanna <kabirkhanna@gmail.com>
Diff between wru versions 0.1-9 dated 2019-02-21 and 0.1-10 dated 2020-10-22
wru-0.1-10/wru/ChangeLog | 1 + wru-0.1-10/wru/DESCRIPTION | 10 +++++----- wru-0.1-10/wru/MD5 | 17 ++++++++--------- wru-0.1-10/wru/R/get_census_api_2.R | 2 +- wru-0.1-10/wru/R/sysdata.rda |binary wru-0.1-10/wru/README.md | 2 +- wru-0.1-10/wru/data/surnames2000.RData |binary wru-0.1-10/wru/data/surnames2010.RData |binary wru-0.1-10/wru/data/voters.RData |binary wru-0.1-9/wru/data/datalist |only 10 files changed, 16 insertions(+), 16 deletions(-)
Title: Advanced Vector Toolkit
Description: Block matrices and object arrays, as general purpose S4 data structures, with automatic formatting. Matrix arrays (that is, arrays of matrices), with binary operators for succinct/convenient matrix array multiplication. Set/sequence related functions, including index/interval finding functions. Also, SQL-like select functions, analytic geometry functions, head/tail generalizations and prototype pooling/convolution functions.
Author: Abby Spurdle
Maintainer: Abby Spurdle <spurdle.a@gmail.com>
Diff between vectools versions 0.1.1 dated 2020-01-09 and 0.2.0 dated 2020-10-22
vectools-0.1.1/vectools/R/constructors.r |only vectools-0.1.1/vectools/R/format_methods.r |only vectools-0.1.1/vectools/R/init.r |only vectools-0.1.1/vectools/R/most_methods.r |only vectools-0.1.1/vectools/R/objtag.r |only vectools-0.1.1/vectools/R/operators.r |only vectools-0.1.1/vectools/R/select.r |only vectools-0.1.1/vectools/R/utilities.r |only vectools-0.1.1/vectools/man/1_subsetting_operators.Rd |only vectools-0.1.1/vectools/man/2_object_arrays.Rd |only vectools-0.1.1/vectools/man/3_matrix_like_objects.Rd |only vectools-0.1.1/vectools/man/4_most_methods.Rd |only vectools-0.1.1/vectools/man/5_element_level_formatting.Rd |only vectools-0.1.1/vectools/man/6_select_function.Rd |only vectools-0.1.1/vectools/man/7_head_and_tail_generalizations.Rd |only vectools-0.2.0/vectools/DESCRIPTION | 14 vectools-0.2.0/vectools/MD5 | 73 +- vectools-0.2.0/vectools/NAMESPACE | 32 vectools-0.2.0/vectools/R/01_nm_operators.r |only vectools-0.2.0/vectools/R/02_vm_operators.r |only vectools-0.2.0/vectools/R/05_LL.r |only vectools-0.2.0/vectools/R/06_vt.r |only vectools-0.2.0/vectools/R/10_OO_constructors.r |only vectools-0.2.0/vectools/R/15_OO_most_methods.r |only vectools-0.2.0/vectools/R/20_STR_format_methods.r |only vectools-0.2.0/vectools/R/25_STR_objtag.r |only vectools-0.2.0/vectools/R/30_M1_seq.r |only vectools-0.2.0/vectools/R/35_M1_plots.r |only vectools-0.2.0/vectools/R/36_M1_algrebra.r |only vectools-0.2.0/vectools/R/40_TAB_select.r |only vectools-0.2.0/vectools/R/45_TAB_ghead.r |only vectools-0.2.0/vectools/R/46_TAB_headt.r |only vectools-0.2.0/vectools/R/50_M2_gkron.r |only vectools-0.2.0/vectools/R/55_M2_pool.r |only vectools-0.2.0/vectools/R/56_M2_convolutions.r |only vectools-0.2.0/vectools/build/vignette.rds |binary vectools-0.2.0/vectools/inst/doc/vectools.R | 249 +------ vectools-0.2.0/vectools/inst/doc/vectools.Rnw | 342 +--------- vectools-0.2.0/vectools/inst/doc/vectools.pdf |binary vectools-0.2.0/vectools/man/00_binary_operators.Rd |only vectools-0.2.0/vectools/man/01_subsetting_operators.Rd |only vectools-0.2.0/vectools/man/02_language-like_functions.Rd |only vectools-0.2.0/vectools/man/03_constants.Rd |only vectools-0.2.0/vectools/man/04_new_generic_functions.Rd |only vectools-0.2.0/vectools/man/10_object_arrays_and_main_subclasses.Rd |only vectools-0.2.0/vectools/man/11_other_matrix-like_objects.Rd |only vectools-0.2.0/vectools/man/12_is_functions.Rd |only vectools-0.2.0/vectools/man/13_other_conversion_functions.Rd |only vectools-0.2.0/vectools/man/20_standard_methods.Rd |only vectools-0.2.0/vectools/man/21_combine_and_replication_functions.Rd |only vectools-0.2.0/vectools/man/30_objtag_methods.Rd |only vectools-0.2.0/vectools/man/40_unique-related_functions.Rd |only vectools-0.2.0/vectools/man/41_sequence_properties.Rd |only vectools-0.2.0/vectools/man/42_optimization-related_functions.Rd |only vectools-0.2.0/vectools/man/43_other_sequence_functions.Rd |only vectools-0.2.0/vectools/man/50_SQL-like_functions.Rd |only vectools-0.2.0/vectools/man/51_grouped_head.Rd |only vectools-0.2.0/vectools/man/52_combined_head_and_tail.Rd |only vectools-0.2.0/vectools/man/60_pre-multiplication_transformation_matrices.Rd |only vectools-0.2.0/vectools/man/61_post-multiplication_transformation_matrices.Rd |only vectools-0.2.0/vectools/man/62_other_transformation_matrices.Rd |only vectools-0.2.0/vectools/man/63_test_plots.Rd |only vectools-0.2.0/vectools/man/70_outer_generalizations.Rd |only vectools-0.2.0/vectools/man/71_pooling.Rd |only vectools-0.2.0/vectools/man/72_convolutions.Rd |only vectools-0.2.0/vectools/man/73_image_filters.Rd |only vectools-0.2.0/vectools/vignettes/vectools.Rnw | 342 +--------- 67 files changed, 246 insertions(+), 806 deletions(-)
Title: Construct Complex Table with 'kable' and Pipe Syntax
Description: Build complex HTML or 'LaTeX' tables using 'kable()' from 'knitr'
and the piping syntax from 'magrittr'. Function 'kable()' is a light weight
table generator coming from 'knitr'. This package simplifies the way to
manipulate the HTML or 'LaTeX' codes generated by 'kable()' and allows
users to construct complex tables and customize styles using a readable
syntax.
Author: Hao Zhu [aut, cre] (<https://orcid.org/0000-0002-3386-6076>),
Thomas Travison [ctb],
Timothy Tsai [ctb],
Will Beasley [ctb],
Yihui Xie [ctb],
GuangChuang Yu [ctb],
Stéphane Laurent [ctb],
Rob Shepherd [ctb],
Yoni Sidi [ctb],
Brian Salzer [ctb],
George Gui [ctb],
Yeliang Fan [ctb],
Duncan Murdoch [ctb],
Bill Evans [ctb]
Maintainer: Hao Zhu <haozhu233@gmail.com>
Diff between kableExtra versions 1.2.1 dated 2020-08-27 and 1.3.0 dated 2020-10-22
DESCRIPTION | 12 MD5 | 67 +- NAMESPACE | 5 R/add_header_above.R | 4 R/cell_spec.R | 4 R/collapse_rows.R | 1 R/column_spec.R | 76 +- R/footnote.R | 8 R/graphics_helpers.R |only R/header_separate.R |only R/kableExtra-package.R | 2 R/kable_as_image.R | 2 R/kable_styling.R | 1 R/mini_plots.R | 467 ++++++++++++++---- R/print.R | 2 R/row_spec.R | 15 R/save_kable.R | 114 +++- R/util.R | 2 R/xtable2kable.R | 2 inst/NEWS.md | 21 inst/doc/awesome_table_in_html.R | 39 + inst/doc/awesome_table_in_html.Rmd | 44 + inst/doc/awesome_table_in_html.html | 275 ++++++++-- inst/doc/awesome_table_in_pdf.R | 43 + inst/doc/awesome_table_in_pdf.Rmd | 48 + inst/doc/awesome_table_in_pdf.pdf |binary inst/doc/best_practice_for_newline_in_latex_table.pdf |binary inst/doc/legacy_features.html | 39 + inst/lightable-0.0.1/lightable.css | 46 + man/graphics_helpers.Rd |only man/header_separate.Rd |only man/listify_args.Rd |only man/make_inline_plot.Rd |only man/spec_boxplot.Rd |only man/spec_hist.Rd | 75 -- man/spec_plot.Rd |only man/spec_pointrange.Rd |only vignettes/awesome_table_in_html.Rmd | 44 + vignettes/awesome_table_in_pdf.Rmd | 48 + 39 files changed, 1177 insertions(+), 329 deletions(-)
Title: Easy Access to Model Information for Various Model Objects
Description: A tool to provide an easy, intuitive and consistent access to
information contained in various R models, like model formulas, model terms,
information about random effects, data that was used to fit the model or
data from response variables. 'insight' mainly revolves around two types
of functions: Functions that find (the names of) information, starting with
'find_', and functions that get the underlying data, starting with 'get_'.
The package has a consistent syntax and works with many different model
objects, where otherwise functions to access these information are missing.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>),
Dominique Makowski [aut, ctb] (<https://orcid.org/0000-0001-5375-9967>),
Indrajeet Patil [aut, ctb] (<https://orcid.org/0000-0003-1995-6531>),
Philip Waggoner [aut, ctb] (<https://orcid.org/0000-0002-7825-7573>),
Mattan S. Ben-Shachar [aut, ctb]
(<https://orcid.org/0000-0002-4287-4801>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between insight versions 0.9.6 dated 2020-09-20 and 0.10.0 dated 2020-10-22
DESCRIPTION | 29 ++--- MD5 | 90 ++++++++-------- NAMESPACE | 50 +++++++++ NEWS.md | 36 ++++++ R/clean_parameters.R | 29 +++++ R/find_algorithm.R | 5 R/find_formula.R | 55 ++++++++++ R/find_parameters.R | 53 +++++++++ R/find_statistic.R | 48 ++++++-- R/find_terms.R | 14 ++ R/format_bf.R | 71 +++++++++--- R/format_ci.R | 16 ++ R/format_value.R | 35 ++++-- R/get_data.R | 19 +++ R/get_parameters.R | 197 +++++++++++++++++++++++++++++++----- R/get_priors.R | 3 R/get_sigma.R |only R/get_statistic.R | 133 ++++++++++++++++++++++-- R/get_varcov.R | 61 +++++++++++ R/get_weights.R | 31 ++++- R/has_intercept.R | 2 R/helper_functions.R | 15 ++ R/is_model.R | 8 + R/is_model_supported.R | 4 R/link_function.R | 15 ++ R/link_inverse.R | 15 ++ R/model_info.R | 17 ++- R/n_obs.R | 22 ++++ R/standardize_names.R |only R/utils_get_data.R | 10 + R/utils_model_info.R | 14 +- README.md | 83 +++++++-------- build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 5 inst/doc/insight.html | 70 ++++++++++++ man/format_bf.Rd | 20 ++- man/format_value.Rd | 3 man/get_parameters.Rd | 19 ++- man/get_sigma.Rd |only man/get_statistic.Rd | 169 +++++++++++++++--------------- man/get_weights.Rd | 52 ++++----- man/standardize_names.Rd |only tests/testthat/test-BayesFactorBF.R | 91 ++++++++++------ tests/testthat/test-MCMCglmm.R | 14 ++ tests/testthat/test-find_terms.R |only tests/testthat/test-format.R | 30 +++++ tests/testthat/test-get_weights.R |only tests/testthat/test-iv_robust.R | 1 49 files changed, 1309 insertions(+), 345 deletions(-)
Title: 'R Markdown' Format for Scientific and Technical Writing
Description: Scientific and technical article format for the web. 'Distill' articles
feature attractive, reader-friendly typography, flexible layout options
for visualizations, and full support for footnotes and citations.
Author: JJ Allaire [aut, cre] (<https://orcid.org/0000-0003-0174-9868>),
Rich Iannone [aut],
Alison Presmanes Hill [aut] (<https://orcid.org/0000-0002-8082-1890>),
Yihui Xie [aut] (<https://orcid.org/0000-0003-0645-5666>),
RStudio, Inc. [cph],
Google LLC [ctb, cph] (https://distill.pub/guide/),
Nick Williams [ctb, cph] (https://wicky.nillia.ms/headroom.js/),
Denis Demchenko [ctb, cph] (https://github.com/lancedikson/bowser),
The Polymer Authors [ctb, cph]
(https://www.webcomponents.org/polyfills/),
Gábor Csárdi [ctb, cph] (whoami),
JooYoung Seo [ctb] (<https://orcid.org/0000-0002-4064-6012>)
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between distill versions 0.8 dated 2020-06-04 and 1.0 dated 2020-10-22
distill-0.8/distill/inst/rmarkdown/templates/distill_article/resources/distill.lua |only distill-1.0/distill/DESCRIPTION | 31 distill-1.0/distill/MD5 | 60 distill-1.0/distill/NAMESPACE | 4 distill-1.0/distill/NEWS.md | 91 - distill-1.0/distill/R/appendices.R | 26 distill-1.0/distill/R/collections.R | 83 + distill-1.0/distill/R/create.R | 164 ++ distill-1.0/distill/R/dependencies.R | 30 distill-1.0/distill/R/distill_article.R | 173 ++ distill-1.0/distill/R/distill_website.R | 3 distill-1.0/distill/R/import.R | 21 distill-1.0/distill/R/listing.R | 97 + distill-1.0/distill/R/metadata.R | 22 distill-1.0/distill/R/navigation.R | 103 + distill-1.0/distill/R/sitemap.R | 78 + distill-1.0/distill/R/theme.R |only distill-1.0/distill/R/utils.R | 44 distill-1.0/distill/inst/examples/distill-interactive-document.html | 358 ++--- distill-1.0/distill/inst/rmarkdown/templates/distill_article/resources/a11y.theme |only distill-1.0/distill/inst/rmarkdown/templates/distill_article/resources/base-style.css |only distill-1.0/distill/inst/rmarkdown/templates/distill_article/resources/base-variables.css |only distill-1.0/distill/inst/rmarkdown/templates/distill_article/resources/default.html | 23 distill-1.0/distill/inst/rmarkdown/templates/distill_article/resources/distill.html | 642 ++++++++-- distill-1.0/distill/inst/rmarkdown/templates/distill_article/resources/listing.html | 227 --- distill-1.0/distill/inst/rmarkdown/templates/distill_article/resources/navbar.html | 5 distill-1.0/distill/inst/rmarkdown/templates/distill_article/resources/rstudio.theme |only distill-1.0/distill/inst/rmarkdown/templates/distill_article/resources/search.html |only distill-1.0/distill/inst/www/anchor |only distill-1.0/distill/inst/www/autocomplete |only distill-1.0/distill/inst/www/fuse |only distill-1.0/distill/man/create_article.Rd |only distill-1.0/distill/man/create_post.Rd | 9 distill-1.0/distill/man/create_theme.Rd |only distill-1.0/distill/man/distill_article.Rd | 20 distill-1.0/distill/man/figures |only distill-1.0/distill/man/import_post.Rd | 6 distill-1.0/distill/man/rename_post_dir.Rd |only 38 files changed, 1591 insertions(+), 729 deletions(-)
Title: Query 'nycflights13'-Like Air Travel Data for Given Years and
Airports
Description: Supplies a set of functions to query air travel data for user-
specified years and airports. Datasets include on-time flights, airlines,
airports, planes, and weather.
Author: Simon P. Couch [aut, cre],
Hadley Wickham [ctb],
Jay Lee [ctb],
Dennis Irorere [ctb]
Maintainer: Simon P. Couch <simonpatrickcouch@gmail.com>
Diff between anyflights versions 0.3.0 dated 2020-08-10 and 0.3.1 dated 2020-10-22
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 7 +++++++ R/as_flights_package.R | 5 +++-- R/utils.R | 32 ++++++++++++++++---------------- README.md | 4 ++-- man/as_flights_package.Rd | 5 +++-- 7 files changed, 41 insertions(+), 32 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-02 0.4.2
2015-02-24 0.4.1
2014-12-17 0.4
2014-07-30 0.3.2
2014-06-15 0.3.1
2014-05-19 0.3
2014-05-03 0.2
2014-03-24 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-04-12 1.0.9
2015-08-19 1.0.8
2012-08-21 1.0.7
2011-10-23 1.0.6
2009-02-18 1.0.5
2006-09-21 1.0.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-08-19 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-05-05 1.2.1
2018-01-20 1.1.5
2018-01-10 1.1.4
2017-09-29 1.1.3
2017-06-07 1.1.2
2017-03-17 1.1.1
2017-02-23 1.0.1
2017-02-22 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-06-25 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-15 0.2.1
2020-03-13 0.2.0
2020-02-20 0.1.5
2020-02-05 0.1.4
2020-01-11 0.1.3
2019-11-11 0.1.0
2019-10-03 0.0.9
2019-09-28 0.0.8
2019-09-13 0.0.7
2019-07-11 0.0.5
2019-06-08 0.0.3
2019-06-04 0.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-03-19 1.0.1
2018-05-09 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-02-19 1.0.2
2018-02-19 1.0.1
2018-01-17 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-02-21 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-02-18 1.1
2019-05-31 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-08 1.1.20
2018-04-12 1.1.19
2015-08-19 1.1.17
2015-06-04 1.1.16
2014-03-25 1.1.10
2014-03-19 1.1.8