Title: Yet Another Probabilistic Neural Network
Description: Another implementation of probabilistic neural network in R
based on Specht (1990) <DOI:10.1016/0893-6080(90)90049-Q>. It is applicable to the
pattern recognition with a N-level response, where N > 2.
Author: WenSui Liu
Maintainer: WenSui Liu <liuwensui@gmail.com>
Diff between yap versions 0.1.0 dated 2020-01-15 and 0.1.1 dated 2020-10-25
DESCRIPTION | 8 ++++---- MD5 | 11 ++++++----- R/pnn.optmiz_logl.R | 2 +- R/pnn.predone.R | 11 ++++++++--- R/pnn.predonev1.R |only R/pnn.search_logl.R | 3 ++- man/pnn.predone.Rd | 15 ++++++++++++++- 7 files changed, 35 insertions(+), 15 deletions(-)
Title: Download DBnomics Data
Description: R access to hundreds of millions data series from DBnomics API
(<https://db.nomics.world/>).
Author: Sebastien Galais [cre, ctb],
Thomas Brand [aut]
Maintainer: Sebastien Galais <s915.stem@gmail.com>
Diff between rdbnomics versions 0.6.3 dated 2020-09-22 and 0.6.4 dated 2020-10-25
DESCRIPTION | 6 - MD5 | 36 +++---- NEWS.md | 9 + R/dbnomics.R | 2 R/rdb.R | 12 +- R/rdb_by_api_link.R | 4 R/rdb_dimensions.R | 8 - R/rdb_series.R | 16 +-- R/sysdata.rda |binary build/vignette.rds |binary inst/doc/rdbnomics.R | 27 +++-- inst/doc/rdbnomics.Rmd | 38 ++++---- inst/doc/rdbnomics.html | 221 ++++++++++++++++++++++++++++++------------------ man/dbnomics.Rd | 2 man/rdb.Rd | 12 +- man/rdb_by_api_link.Rd | 4 man/rdb_dimensions.Rd | 8 - man/rdb_series.Rd | 16 +-- vignettes/rdbnomics.Rmd | 38 ++++---- 19 files changed, 272 insertions(+), 187 deletions(-)
Title: Yet Another General Regression Neural Network
Description: Another implementation of general regression neural network in R
based on Specht (1991) <DOI:10.1109/72.97934>. It is applicable to the
functional approximation or the classification.
Author: WenSui Liu
Maintainer: WenSui Liu <liuwensui@gmail.com>
Diff between yager versions 0.1.0 dated 2020-01-14 and 0.1.1 dated 2020-10-25
DESCRIPTION | 8 ++++---- MD5 | 17 +++++++++-------- R/folds.R | 2 +- R/grnn.fit.R | 2 +- R/grnn.predict.R | 4 +++- R/grnn.predone.R | 20 ++++++++++++++------ R/grnn.predonev1.R |only man/folds.Rd | 2 +- man/grnn.fit.Rd | 6 +++--- man/grnn.predone.Rd | 17 ++++++++++++++++- 10 files changed, 52 insertions(+), 26 deletions(-)
Title: Politely Web Scrape Data from SquashInfo
Description: Scrape SquashInfo <http://www.squashinfo.com/> for data on the Professional Squash Association World Tour and other squash events. 'squashinformr' functions scrape, parse, and clean data associated with players, tournaments, and rankings.
Author: Hayden MacDonald [aut, cre]
Maintainer: Hayden MacDonald <hayden.macdonald.8778@gmail.com>
Diff between squashinformr versions 0.1.2 dated 2020-05-01 and 0.1.4 dated 2020-10-25
DESCRIPTION | 8 - MD5 | 31 +++--- R/get_historical_rankings.R | 4 R/get_matchup.R | 16 +-- R/get_player_recent_games.R | 10 + R/get_player_recent_matches.R | 10 + R/get_player_recent_results.R | 33 +++++- R/get_tournament_matches.R | 8 + README.md | 113 +++++++++++++--------- man/figures/unnamed-chunk-4-1.png |only man/get_historical_rankings.Rd | 4 man/get_matchup.Rd | 4 tests/testthat/test_get_matchup.R | 6 - tests/testthat/test_get_player_rankings_history.R | 2 tests/testthat/test_get_player_recent_games.R | 2 tests/testthat/test_get_player_recent_matches.R | 2 tests/testthat/test_get_player_recent_results.R | 2 17 files changed, 155 insertions(+), 100 deletions(-)
Title: Functions for Spatial Point Pattern Analysis
Description: Some wrappers, functions and data sets for for spatial point pattern analysis (mainly based on 'spatstat'), used in the book "Introduccion al Analisis Espacial de Datos en Ecologia y Ciencias Ambientales: Metodos y Aplicaciones" and in the papers by De la Cruz et al. (2008) <doi:10.1111/j.0906-7590.2008.05299.x> and Olano et al. (2009) <doi:10.1051/forest:2008074>.
Author: Marcelino de la Cruz Rot, with contributions of Philip M. Dixon and Jose M. Blanco-Moreno
Maintainer: Marcelino de la Cruz Rot <marcelino.delacruz@urjc.es>
Diff between ecespa versions 1.1-11 dated 2020-02-13 and 1.1-12 dated 2020-10-25
DESCRIPTION | 9 ++++--- MD5 | 6 ++--- R/K1K2.R | 68 +++++++++++++++++++++++++++++++++++++++--------------------- man/K1K2.rd | 10 ++++---- 4 files changed, 58 insertions(+), 35 deletions(-)
Title: Handle Data with Messy Header Rows and Broken Values
Description: Verb-like functions to work with messy data, often derived from
spreadsheets or parsed PDF tables. Includes functions for unwrapping
values broken up across rows, relocating embedded grouping values,
and to annotate meaningful formatting in spreadsheet files.
Author: Luis D. Verde Arregoitia [aut, cre]
(<https://orcid.org/0000-0001-9520-6543>)
Maintainer: Luis D. Verde Arregoitia <luis@liomys.mx>
Diff between unheadr versions 0.2.1 dated 2020-03-03 and 0.3.0 dated 2020-10-25
unheadr-0.2.1/unheadr/man/dog_test.Rd |only unheadr-0.3.0/unheadr/DESCRIPTION | 10 unheadr-0.3.0/unheadr/MD5 | 71 + unheadr-0.3.0/unheadr/NAMESPACE | 3 unheadr-0.3.0/unheadr/NEWS.md | 11 unheadr-0.3.0/unheadr/R/annotate_mf.R | 61 + unheadr-0.3.0/unheadr/R/annotate_mf_all.R |only unheadr-0.3.0/unheadr/R/dataset_documentation.R | 76 +- unheadr-0.3.0/unheadr/R/mash_colnames.R |only unheadr-0.3.0/unheadr/R/regex_valign.R |only unheadr-0.3.0/unheadr/R/unbreak_fn.R | 50 - unheadr-0.3.0/unheadr/R/untangle_fn.R | 12 unheadr-0.3.0/unheadr/R/unwrap_fn.R | 18 unheadr-0.3.0/unheadr/build/vignette.rds |binary unheadr-0.3.0/unheadr/data/AOEunits.rda |only unheadr-0.3.0/unheadr/data/AOEunits_raw.rda |only unheadr-0.3.0/unheadr/data/primates2017.rda |binary unheadr-0.3.0/unheadr/data/primates2017_broken.rda |binary unheadr-0.3.0/unheadr/inst/doc/unheadr-vignette.R | 64 + unheadr-0.3.0/unheadr/inst/doc/unheadr-vignette.Rmd | 117 +++ unheadr-0.3.0/unheadr/inst/doc/unheadr-vignette.html | 443 ++++++++---- unheadr-0.3.0/unheadr/inst/extdata/boutiques.xlsx |only unheadr-0.3.0/unheadr/man/AOEunits.Rd |only unheadr-0.3.0/unheadr/man/AOEunits_raw.Rd |only unheadr-0.3.0/unheadr/man/annotate_mf.Rd | 16 unheadr-0.3.0/unheadr/man/annotate_mf_all.Rd |only unheadr-0.3.0/unheadr/man/boutiques.xlsx.Rd |only unheadr-0.3.0/unheadr/man/dog_test.xlsx.Rd |only unheadr-0.3.0/unheadr/man/mash_colnames.Rd |only unheadr-0.3.0/unheadr/man/primates2017.Rd | 22 unheadr-0.3.0/unheadr/man/primates2017_broken.Rd | 22 unheadr-0.3.0/unheadr/man/primates2017_wrapped.Rd | 26 unheadr-0.3.0/unheadr/man/regex_valign.Rd |only unheadr-0.3.0/unheadr/man/unbreak_rows.Rd | 4 unheadr-0.3.0/unheadr/man/unbreak_vals.Rd | 18 unheadr-0.3.0/unheadr/man/untangle2.Rd | 16 unheadr-0.3.0/unheadr/man/unwrap_cols.Rd | 4 unheadr-0.3.0/unheadr/tests/testthat/dog_test_f2.xlsx |only unheadr-0.3.0/unheadr/tests/testthat/dog_test_mult.xlsx |only unheadr-0.3.0/unheadr/tests/testthat/dog_test_nonrect.xlsx |only unheadr-0.3.0/unheadr/tests/testthat/test-annotate_mf.R | 33 unheadr-0.3.0/unheadr/tests/testthat/test-annotate_mf_all.R |only unheadr-0.3.0/unheadr/tests/testthat/test-mash_colnames.R |only unheadr-0.3.0/unheadr/tests/testthat/test-regex_valign.R |only unheadr-0.3.0/unheadr/tests/testthat/test-unbreak_fn.R | 43 - unheadr-0.3.0/unheadr/vignettes/boutiques.png |only unheadr-0.3.0/unheadr/vignettes/unheadr-vignette.Rmd | 117 +++ 47 files changed, 950 insertions(+), 307 deletions(-)
Title: Execution of Multiple Clustering Algorithm
Description: The design of this package allows us to run different clustering packages and compare the results between them, to determine which algorithm behaves best from the data provided.
Author: Luis Alfonso Perez Martos [aut, cre]
Maintainer: Luis Alfonso Perez Martos <lapm0001@gmail.com>
Diff between Clustering versions 1.6 dated 2020-04-23 and 1.7 dated 2020-10-25
Clustering-1.6/Clustering/R/dataset.R |only Clustering-1.6/Clustering/build |only Clustering-1.6/Clustering/inst/doc |only Clustering-1.6/Clustering/man/info_external.Rd |only Clustering-1.6/Clustering/man/info_internal.Rd |only Clustering-1.6/Clustering/man/plot_external_validation.Rd |only Clustering-1.6/Clustering/man/plot_internal_validation.Rd |only Clustering-1.6/Clustering/man/print.best_ranked_external_metrics.Rd |only Clustering-1.6/Clustering/man/print.best_ranked_internal_metrics.Rd |only Clustering-1.6/Clustering/man/print.clustering.Rd |only Clustering-1.6/Clustering/man/print.evaluate_best_validation_external_by_metrics.Rd |only Clustering-1.6/Clustering/man/print.evaluate_best_validation_internal_by_metrics.Rd |only Clustering-1.6/Clustering/man/print.evaluate_validation_external_by_metrics.Rd |only Clustering-1.6/Clustering/man/print.evaluate_validation_internal_by_metrics.Rd |only Clustering-1.6/Clustering/man/print.result_external_algorithm_by_metric.Rd |only Clustering-1.6/Clustering/man/print.result_internal_algorithm_by_metric.Rd |only Clustering-1.6/Clustering/vignettes |only Clustering-1.7/Clustering/DESCRIPTION | 25 Clustering-1.7/Clustering/MD5 | 185 ++--- Clustering-1.7/Clustering/NAMESPACE | 39 + Clustering-1.7/Clustering/R/aggExCluster.R | 21 Clustering-1.7/Clustering/R/agnes.R | 42 - Clustering-1.7/Clustering/R/algorithm.R | 329 ++++++---- Clustering-1.7/Clustering/R/apcluster.R | 84 +- Clustering-1.7/Clustering/R/app.R |only Clustering-1.7/Clustering/R/clara.R | 52 - Clustering-1.7/Clustering/R/constants.R | 32 Clustering-1.7/Clustering/R/daisy.R | 78 +- Clustering-1.7/Clustering/R/diana.R | 22 Clustering-1.7/Clustering/R/evaluate_column_dataset.R | 88 +- Clustering-1.7/Clustering/R/external_validation.R | 112 ++- Clustering-1.7/Clustering/R/fanny.R | 52 - Clustering-1.7/Clustering/R/fuzzy.R | 76 +- Clustering-1.7/Clustering/R/gama.R | 26 Clustering-1.7/Clustering/R/gmm.R | 56 - Clustering-1.7/Clustering/R/hclust.R | 28 Clustering-1.7/Clustering/R/internal_validation.R | 89 +- Clustering-1.7/Clustering/R/kmeans.R | 58 - Clustering-1.7/Clustering/R/mona.R | 26 Clustering-1.7/Clustering/R/pam.R | 40 - Clustering-1.7/Clustering/R/pvclust.R | 48 - Clustering-1.7/Clustering/R/pvpick.R | 24 Clustering-1.7/Clustering/R/read_arff.R |only Clustering-1.7/Clustering/R/utils.R | 159 ++++ Clustering-1.7/Clustering/R/validation.R | 233 ++++--- Clustering-1.7/Clustering/inst/shiny |only Clustering-1.7/Clustering/man/aggExCluster_euclidean.Rd | 14 Clustering-1.7/Clustering/man/agnes_euclidean_method.Rd | 14 Clustering-1.7/Clustering/man/agnes_manhattan_method.Rd | 10 Clustering-1.7/Clustering/man/apclusterK_euclidean.Rd | 18 Clustering-1.7/Clustering/man/apclusterK_manhattan.Rd | 18 Clustering-1.7/Clustering/man/apclusterK_minkowski.Rd | 18 Clustering-1.7/Clustering/man/appClustering.Rd |only Clustering-1.7/Clustering/man/best_ranked_external_metrics.Rd | 29 Clustering-1.7/Clustering/man/best_ranked_internal_metrics.Rd | 29 Clustering-1.7/Clustering/man/calculate_connectivity.Rd | 2 Clustering-1.7/Clustering/man/calculate_dunn.Rd | 4 Clustering-1.7/Clustering/man/clara_euclidean_method.Rd | 18 Clustering-1.7/Clustering/man/clara_manhattan_method.Rd | 18 Clustering-1.7/Clustering/man/clustering.Rd | 87 ++ Clustering-1.7/Clustering/man/connectivity_metric.Rd | 4 Clustering-1.7/Clustering/man/convert_numeric_matrix.Rd |only Clustering-1.7/Clustering/man/daisy_euclidean_method.Rd | 18 Clustering-1.7/Clustering/man/daisy_gower_method.Rd | 18 Clustering-1.7/Clustering/man/daisy_manhattan_method.Rd | 18 Clustering-1.7/Clustering/man/diana_euclidean_method.Rd | 14 Clustering-1.7/Clustering/man/dunn_metric.Rd | 4 Clustering-1.7/Clustering/man/evaluate_all_column_dataset.Rd | 6 Clustering-1.7/Clustering/man/evaluate_best_validation_external_by_metrics.Rd | 26 Clustering-1.7/Clustering/man/evaluate_best_validation_internal_by_metrics.Rd | 29 Clustering-1.7/Clustering/man/evaluate_validation_external_by_metrics.Rd | 30 Clustering-1.7/Clustering/man/evaluate_validation_internal_by_metrics.Rd | 30 Clustering-1.7/Clustering/man/execute_datasets.Rd | 22 Clustering-1.7/Clustering/man/execute_package_parallel.Rd |only Clustering-1.7/Clustering/man/export_file_external.Rd |only Clustering-1.7/Clustering/man/export_file_internal.Rd |only Clustering-1.7/Clustering/man/extension_file.Rd |only Clustering-1.7/Clustering/man/fanny_euclidean_method.Rd | 18 Clustering-1.7/Clustering/man/fanny_manhattan_method.Rd | 18 Clustering-1.7/Clustering/man/fuzzy_cm_method.Rd | 18 Clustering-1.7/Clustering/man/fuzzy_gg_method.Rd | 18 Clustering-1.7/Clustering/man/fuzzy_gk_method.Rd | 16 Clustering-1.7/Clustering/man/gama.Rd | 18 Clustering-1.7/Clustering/man/gmm_euclidean_method.Rd | 18 Clustering-1.7/Clustering/man/gmm_manhattan_method.Rd | 18 Clustering-1.7/Clustering/man/hclust_euclidean.Rd | 18 Clustering-1.7/Clustering/man/information_external.Rd |only Clustering-1.7/Clustering/man/information_internal.Rd |only Clustering-1.7/Clustering/man/internal_validation.Rd | 4 Clustering-1.7/Clustering/man/kmeans_arma_method.Rd | 8 Clustering-1.7/Clustering/man/kmeans_rcpp_method.Rd | 18 Clustering-1.7/Clustering/man/metrics_calculate.Rd | 4 Clustering-1.7/Clustering/man/mini_kmeans_method.Rd | 8 Clustering-1.7/Clustering/man/mona_method.Rd | 18 Clustering-1.7/Clustering/man/pam_euclidean_method.Rd | 18 Clustering-1.7/Clustering/man/pam_manhattan_method.Rd | 8 Clustering-1.7/Clustering/man/plot_clustering.Rd |only Clustering-1.7/Clustering/man/pvclust_correlation_method.Rd | 18 Clustering-1.7/Clustering/man/pvclust_euclidean_method.Rd | 18 Clustering-1.7/Clustering/man/pvpick_method.Rd | 16 Clustering-1.7/Clustering/man/read_file.Rd |only Clustering-1.7/Clustering/man/result_external_algorithm_by_metric.Rd | 28 Clustering-1.7/Clustering/man/result_internal_algorithm_by_metric.Rd | 28 Clustering-1.7/Clustering/man/show_result_external_algorithm_group_by_clustering.Rd |only Clustering-1.7/Clustering/man/show_result_internal_algorithm_group_by_clustering.Rd |only Clustering-1.7/Clustering/man/sort.clustering.Rd |only Clustering-1.7/Clustering/man/sub-.clustering.Rd |only Clustering-1.7/Clustering/tests/testthat/test-clustering.R | 16 108 files changed, 1725 insertions(+), 1167 deletions(-)
Title: Statistical Inference of Vine Copulas
Description: Provides tools for the statistical analysis of vine copula models.
The package includes tools for parameter estimation, model selection,
simulation, goodness-of-fit tests, and visualization. Tools for estimation,
selection and exploratory data analysis of bivariate copula models are also
provided.
Author: Thomas Nagler [aut, cre],
Ulf Schepsmeier [aut],
Jakob Stoeber [aut],
Eike Christian Brechmann [aut],
Benedikt Graeler [aut],
Tobias Erhardt [aut],
Carlos Almeida [ctb],
Aleksey Min [ctb, ths],
Claudia Czado [ctb, ths],
Mathias Hofmann [ctb],
Matthias Killiches [ctb],
Harry Joe [ctb],
Thibault Vatter [ctb]
Maintainer: Thomas Nagler <mail@tnagler.com>
Diff between VineCopula versions 2.4.0 dated 2020-10-03 and 2.4.1 dated 2020-10-25
DESCRIPTION | 9 ++++----- MD5 | 14 +++++++------- NEWS.md | 8 ++++++++ R/C2RVine.R | 16 ---------------- R/D2RVine.R | 16 ---------------- build/partial.rdb |binary man/C2RVine.Rd | 16 ---------------- man/D2RVine.Rd | 16 ---------------- 8 files changed, 19 insertions(+), 76 deletions(-)
Title: Global Sensitivity Analysis of Model Outputs
Description: A collection of functions for factor screening, global sensitivity analysis and robustness analysis. Most of the functions have to be applied on model with scalar output, but several functions support multi-dimensional outputs.
Author: Bertrand Iooss, Sebastien Da Veiga, Alexandre Janon and Gilles Pujol, with contributions from Baptiste Broto, Khalid Boumhaout, Thibault Delage, Reda El Amri, Jana Fruth, Laurent Gilquin, Joseph Guillaume, Loic Le Gratiet, Paul Lemaitre, Amandine Marrel, Anouar Meynaoui, Barry L. Nelson, Filippo Monari, Roelof Oomen, Oldrich Rakovec, Bernardo Ramos, Olivier Roustant, Eunhye Song, Jeremy Staum, Roman Sueur, Taieb Touati, Frank Weber
Maintainer: Bertrand Iooss <biooss@yahoo.fr>
Diff between sensitivity versions 1.22.1 dated 2020-08-07 and 1.22.2 dated 2020-10-25
DESCRIPTION | 6 MD5 | 25 - NAMESPACE | 2 NEWS | 13 R/PLIsuperquantile.r | 936 ++++++++++++++++++++++----------------------- R/delsa.R | 12 R/lmg.R |only R/sobolshap_knn.R | 930 +++++++++++++++++++++++--------------------- R/testmodels.R | 31 + man/delsa.Rd | 10 man/sensiHSIC.Rd | 16 man/sensitivity-package.Rd | 2 man/sobolshap_knn.Rd | 128 +++--- man/testmodels.Rd | 19 14 files changed, 1119 insertions(+), 1011 deletions(-)
Title: Features Extracted from Position Specific Scoring Matrix (PSSM)
Description: Returns almost all features that has been extracted from Position Specific
Scoring Matrix (PSSM) so far, which is a matrix of L rows (L is protein length)
and 20 columns produced by 'PSI-BLAST' which is a program to produce
PSSM Matrix from multiple sequence alignment of proteins
see <https://www.ncbi.nlm.nih.gov/books/NBK2590/> for mor details. some
of these features are described in Zahiri, J., et al.(2013)
<DOI:10.1016/j.ygeno.2013.05.006>,
Saini, H., et al.(2016)
<DOI:10.17706/jsw.11.8.756-767>,
Ding, S., et al.(2014)
<DOI:10.1016/j.biochi.2013.09.013>,
Cheng, C.W., et al.(2008)
<DOI:10.1186/1471-2105-9-S12-S6>,
Juan, E.Y., et al.(2009)
<DOI:10.1109/CISIS.2009.194>.
Author: Javad zahiri [aut],
Alireza mohammadi [aut, cre]
Maintainer: Alireza mohammadi <alireza691111@gmail.com>
Diff between PSSMCOOL versions 0.2.0 dated 2020-08-07 and 0.2.1 dated 2020-10-25
DESCRIPTION | 15 +++++++++------ MD5 | 6 +++--- R/pssm_sd.R | 2 +- man/PSSMCOOL-package.Rd | 2 +- 4 files changed, 14 insertions(+), 11 deletions(-)
Title: Paws Low-Level Amazon Web Services API
Description: Functions for making low-level API requests to Amazon Web Services
<https://aws.amazon.com>. The functions handle building, signing, and
sending requests, and receiving responses. They are designed to help build
higher-level interfaces to individual services, such as Simple Storage
Service (S3).
Author: David Kretch [aut, cre],
Adam Banker [aut],
Amazon.com, Inc. [cph]
Maintainer: David Kretch <david.kretch@gmail.com>
Diff between paws.common versions 0.3.4 dated 2020-09-06 and 0.3.5 dated 2020-10-25
DESCRIPTION | 10 +- MD5 | 19 ++--- NEWS.md | 9 ++ R/credential_providers.R | 112 +++++++++++++++++++++++++++++++- R/credential_sts.R |only R/credentials.R | 1 R/handlers_ec2query.R | 4 - R/xmlutil.R | 3 tests/testthat/test_handlers_ec2query.R | 2 tests/testthat/test_handlers_restxml.R | 19 +++++ tests/testthat/test_url.R | 2 11 files changed, 161 insertions(+), 20 deletions(-)
Title: Search and Retrieve Data from the BC Data Catalogue
Description: Search, query, and download tabular and
'geospatial' data from the British Columbia Data Catalogue
(<https://catalogue.data.gov.bc.ca/>). Search catalogue data records
based on keywords, data licence, sector, data format, and B.C.
government organization. View metadata directly in R, download many
data formats, and query 'geospatial' data available via the B.C.
government Web Feature Service ('WFS') using 'dplyr' syntax.
Author: Andy Teucher [aut, cre] (<https://orcid.org/0000-0002-7840-692X>),
Sam Albers [aut, ctb] (<https://orcid.org/0000-0002-9270-7884>),
Stephanie Hazlitt [aut, ctb] (<https://orcid.org/0000-0002-3161-2304>),
Province of British Columbia [cph]
Maintainer: Andy Teucher <andy.teucher@gov.bc.ca>
Diff between bcdata versions 0.2.0 dated 2020-06-25 and 0.2.1 dated 2020-10-25
DESCRIPTION | 24 MD5 | 163 - NAMESPACE | 182 - NEWS.md | 128 R/bcdata-package.R | 40 R/bcdc-web-services.R | 459 +-- R/bcdc_browse.R | 162 - R/bcdc_options.R | 145 - R/bcdc_search.R | 597 ++-- R/cql-geom-predicates.R | 519 +-- R/cql-translator.R | 365 +- R/describe-feature.R | 259 - R/get_data.R | 482 +-- R/utils-as_tibble.R | 44 R/utils-classes.R | 941 +++--- R/utils-collect.R | 44 R/utils-filter.R | 44 R/utils-is.R | 68 R/utils-mutate.R | 44 R/utils-pipe.R | 45 R/utils-select.R | 44 R/utils-show-query.R | 44 R/utils.R | 801 ++--- R/zzz.R | 42 README.md | 306 +- build/vignette.rds |binary inst/CITATION | 46 inst/doc/bcdata.Rmd | 898 +++--- inst/doc/bcdata.html | 1441 +++++----- inst/doc/efficiently-query-spatial-data-in-the-bc-data-catalogue.Rmd | 872 +++--- inst/doc/efficiently-query-spatial-data-in-the-bc-data-catalogue.html | 1383 ++++----- inst/doc/explore-silviculture-data-using-bcdata.Rmd | 620 ++-- inst/doc/explore-silviculture-data-using-bcdata.html | 1181 ++++---- man/CQL.Rd | 48 man/bcdata-package.Rd | 88 man/bcdc_browse.Rd | 130 man/bcdc_describe_feature.Rd | 87 man/bcdc_get_data.Rd | 183 - man/bcdc_get_record.Rd | 77 man/bcdc_list.Rd | 35 man/bcdc_options.Rd | 97 man/bcdc_preview.Rd | 71 man/bcdc_query_geodata.Rd | 160 - man/bcdc_read_functions.Rd | 28 man/bcdc_search.Rd | 103 man/bcdc_search_facets.Rd | 56 man/bcdc_tidy_resources.Rd | 75 man/collect-methods.Rd | 78 man/cql_geom_predicates.Rd | 138 man/filter.Rd | 88 man/mutate.Rd | 74 man/pipe.Rd | 24 man/select.Rd | 101 man/show_query.Rd | 90 man/wfsConnection-class.Rd |only tests/testthat.R | 34 tests/testthat/helper-bcdata.R | 36 tests/testthat/setup.R | 44 tests/testthat/teardown.R | 26 tests/testthat/test-browse.R | 46 tests/testthat/test-cql-string.R | 194 - tests/testthat/test-describe-feature.R | 130 tests/testthat/test-edge-cases.R | 34 tests/testthat/test-geom-operators.R | 274 - tests/testthat/test-get-data.R | 342 +- tests/testthat/test-get_record.R | 224 - tests/testthat/test-options.R | 56 tests/testthat/test-print-methods.R | 114 tests/testthat/test-query-geodata-collect.R | 207 - tests/testthat/test-query-geodata-filter.R | 568 ++- tests/testthat/test-query-geodata-head-tail.R | 120 tests/testthat/test-query-geodata-mutate.R | 44 tests/testthat/test-query-geodata-select.R | 164 - tests/testthat/test-query-geodata.R | 136 tests/testthat/test-search.R | 54 tests/testthat/test-utils.R | 116 vignettes/bcdata.Rmd | 898 +++--- vignettes/bcdata.Rmd.orig | 424 +- vignettes/efficiently-query-spatial-data-in-the-bc-data-catalogue.Rmd | 872 +++--- vignettes/efficiently-query-spatial-data-in-the-bc-data-catalogue.Rmd.orig | 440 +-- vignettes/explore-silviculture-data-using-bcdata.Rmd | 620 ++-- vignettes/explore-silviculture-data-using-bcdata.Rmd.orig | 440 +-- vignettes/precompile.R | 90 83 files changed, 10767 insertions(+), 10244 deletions(-)
Title: Linguistic Phonetic Fieldwork Tools
Description: There are a lot of different typical tasks that have to be solved during phonetic research and experiments. This includes creating a presentation that will contain all stimuli, renaming and concatenating multiple sound files recorded during a session, automatic annotation in 'Praat' TextGrids (this is one of the sound annotation standards provided by 'Praat' software, see Boersma & Weenink 2020 <https://www.fon.hum.uva.nl/praat/>), creating an html table with annotations and spectrograms, and converting multiple formats ('Praat' TextGrid, 'ELAN', 'EXMARaLDA', 'Audacity', subtitles '.srt', and 'FLEx' flextext). All of these tasks can be solved by a mixture of different tools (any programming language has programs for automatic renaming, and Praat contains scripts for concatenating and renaming files, etc.). 'phonfieldwork' provides a functionality that will make it easier to solve those tasks independently of any additional tools. You can also compare the functionality with other packages: 'rPraat' <https://CRAN.R-project.org/package=rPraat>, 'textgRid' <https://CRAN.R-project.org/package=textgRid>.
Author: George Moroz [aut, cre] (<https://orcid.org/0000-0003-1990-6083>),
Jonathan Keane [rev] (<https://orcid.org/0000-0001-7087-9776>),
Niko Partanen [rev] (<https://orcid.org/0000-0001-8584-3880>)
Maintainer: George Moroz <agricolamz@gmail.com>
Diff between phonfieldwork versions 0.0.7 dated 2020-07-10 and 0.0.8 dated 2020-10-25
phonfieldwork-0.0.7/phonfieldwork/NEWS |only phonfieldwork-0.0.7/phonfieldwork/R/add_leading_symbols.R |only phonfieldwork-0.0.7/phonfieldwork/R/create_image_look_up.R |only phonfieldwork-0.0.7/phonfieldwork/R/create_sound_play.R |only phonfieldwork-0.0.7/phonfieldwork/R/rename_videofiles.R |only phonfieldwork-0.0.7/phonfieldwork/inst/doc/introduction_to_phonfieldwork.R |only phonfieldwork-0.0.7/phonfieldwork/inst/doc/introduction_to_phonfieldwork.Rmd |only phonfieldwork-0.0.7/phonfieldwork/inst/doc/introduction_to_phonfieldwork.html |only phonfieldwork-0.0.7/phonfieldwork/man/rename_videofiles.Rd |only phonfieldwork-0.0.7/phonfieldwork/vignettes/introduction_to_phonfieldwork.Rmd |only phonfieldwork-0.0.8/phonfieldwork/DESCRIPTION | 49 phonfieldwork-0.0.8/phonfieldwork/MD5 | 185 +- phonfieldwork-0.0.8/phonfieldwork/NAMESPACE | 12 phonfieldwork-0.0.8/phonfieldwork/NEWS.md |only phonfieldwork-0.0.8/phonfieldwork/R/annotate_textgrid.R | 110 - phonfieldwork-0.0.8/phonfieldwork/R/audacity_to_df.R | 25 phonfieldwork-0.0.8/phonfieldwork/R/concatenate_soundfiles.R | 174 +- phonfieldwork-0.0.8/phonfieldwork/R/concatenate_textgrids.R |only phonfieldwork-0.0.8/phonfieldwork/R/create_empty_textgrid.R |only phonfieldwork-0.0.8/phonfieldwork/R/create_glossed_document.R | 78 - phonfieldwork-0.0.8/phonfieldwork/R/create_presentation.R | 112 + phonfieldwork-0.0.8/phonfieldwork/R/create_subannotation.R | 66 - phonfieldwork-0.0.8/phonfieldwork/R/create_viewer.R | 111 - phonfieldwork-0.0.8/phonfieldwork/R/df_to_tier.R | 74 - phonfieldwork-0.0.8/phonfieldwork/R/draw_sound.R | 647 ++++++---- phonfieldwork-0.0.8/phonfieldwork/R/draw_spectrogram.R | 367 +++-- phonfieldwork-0.0.8/phonfieldwork/R/eaf_to_df.R | 181 +- phonfieldwork-0.0.8/phonfieldwork/R/exb_to_df.R | 141 +- phonfieldwork-0.0.8/phonfieldwork/R/extract_intervals.R | 78 - phonfieldwork-0.0.8/phonfieldwork/R/flextext_to_df.R | 166 ++ phonfieldwork-0.0.8/phonfieldwork/R/formant_to_df.R |only phonfieldwork-0.0.8/phonfieldwork/R/get_sound_durations.R | 55 phonfieldwork-0.0.8/phonfieldwork/R/get_textgrid_names.R | 22 phonfieldwork-0.0.8/phonfieldwork/R/intensity_to_df.R |only phonfieldwork-0.0.8/phonfieldwork/R/pitch_to_df.R |only phonfieldwork-0.0.8/phonfieldwork/R/read_from_folder.R |only phonfieldwork-0.0.8/phonfieldwork/R/rename_soundfiles.R | 86 - phonfieldwork-0.0.8/phonfieldwork/R/set_textgrid_names.R | 40 phonfieldwork-0.0.8/phonfieldwork/R/srt_to_df.R | 68 - phonfieldwork-0.0.8/phonfieldwork/R/textgrid_to_df.R | 106 + phonfieldwork-0.0.8/phonfieldwork/R/tier_to_df.R | 78 - phonfieldwork-0.0.8/phonfieldwork/R/utils.r |only phonfieldwork-0.0.8/phonfieldwork/build/vignette.rds |binary phonfieldwork-0.0.8/phonfieldwork/inst/doc/data_manipulation_with_tidyverse.Rmd |only phonfieldwork-0.0.8/phonfieldwork/inst/doc/data_manipulation_with_tidyverse.html |only phonfieldwork-0.0.8/phonfieldwork/inst/doc/ethical_research_with_phonfieldwork.Rmd | 4 phonfieldwork-0.0.8/phonfieldwork/inst/doc/ethical_research_with_phonfieldwork.html | 7 phonfieldwork-0.0.8/phonfieldwork/inst/doc/phonfieldwork.Rmd |only phonfieldwork-0.0.8/phonfieldwork/inst/doc/phonfieldwork.html |only phonfieldwork-0.0.8/phonfieldwork/inst/extdata/e.Formant |only phonfieldwork-0.0.8/phonfieldwork/inst/extdata/post.TextGrid |only phonfieldwork-0.0.8/phonfieldwork/inst/extdata/r-logo.png |only phonfieldwork-0.0.8/phonfieldwork/inst/extdata/test.Intensity |only phonfieldwork-0.0.8/phonfieldwork/inst/extdata/test.Pitch |only phonfieldwork-0.0.8/phonfieldwork/inst/extdata/test_short.TextGrid |only phonfieldwork-0.0.8/phonfieldwork/inst/rmarkdown/templates/annotation_viewer/skeleton/skeleton.Rmd | 4 phonfieldwork-0.0.8/phonfieldwork/inst/rmarkdown/templates/glossed_document/skeleton/skeleton.Rmd | 292 +++- phonfieldwork-0.0.8/phonfieldwork/man/add_leading_symbols.Rd | 9 phonfieldwork-0.0.8/phonfieldwork/man/annotate_textgrid.Rd | 26 phonfieldwork-0.0.8/phonfieldwork/man/audacity_to_df.Rd | 16 phonfieldwork-0.0.8/phonfieldwork/man/concatenate_soundfiles.Rd | 15 phonfieldwork-0.0.8/phonfieldwork/man/concatenate_textgrids.Rd |only phonfieldwork-0.0.8/phonfieldwork/man/create_empty_textgrid.Rd |only phonfieldwork-0.0.8/phonfieldwork/man/create_glossed_document.Rd | 23 phonfieldwork-0.0.8/phonfieldwork/man/create_image_look_up.Rd | 12 phonfieldwork-0.0.8/phonfieldwork/man/create_presentation.Rd | 44 phonfieldwork-0.0.8/phonfieldwork/man/create_sound_play.Rd | 9 phonfieldwork-0.0.8/phonfieldwork/man/create_subannotation.Rd | 28 phonfieldwork-0.0.8/phonfieldwork/man/df_to_tier.Rd | 27 phonfieldwork-0.0.8/phonfieldwork/man/draw_sound.Rd | 115 + phonfieldwork-0.0.8/phonfieldwork/man/draw_spectrogram.Rd | 77 - phonfieldwork-0.0.8/phonfieldwork/man/eaf_to_df.Rd | 9 phonfieldwork-0.0.8/phonfieldwork/man/exb_to_df.Rd | 9 phonfieldwork-0.0.8/phonfieldwork/man/extract_intervals.Rd | 29 phonfieldwork-0.0.8/phonfieldwork/man/flextext_to_df.Rd | 5 phonfieldwork-0.0.8/phonfieldwork/man/formant_to_df.Rd |only phonfieldwork-0.0.8/phonfieldwork/man/get_sound_duration.Rd | 8 phonfieldwork-0.0.8/phonfieldwork/man/get_textgrid_names.Rd | 9 phonfieldwork-0.0.8/phonfieldwork/man/intensity_to_df.Rd |only phonfieldwork-0.0.8/phonfieldwork/man/pitch_to_df.Rd |only phonfieldwork-0.0.8/phonfieldwork/man/read_from_folder.Rd |only phonfieldwork-0.0.8/phonfieldwork/man/rename_soundfiles.Rd | 19 phonfieldwork-0.0.8/phonfieldwork/man/set_textgrid_names.Rd | 15 phonfieldwork-0.0.8/phonfieldwork/man/srt_to_df.Rd | 8 phonfieldwork-0.0.8/phonfieldwork/man/textgrid_to_df.Rd | 18 phonfieldwork-0.0.8/phonfieldwork/man/tier_to_df.Rd | 21 phonfieldwork-0.0.8/phonfieldwork/tests |only phonfieldwork-0.0.8/phonfieldwork/vignettes/data_manipulation_with_tidyverse.Rmd |only phonfieldwork-0.0.8/phonfieldwork/vignettes/ethical_research_with_phonfieldwork.Rmd | 4 phonfieldwork-0.0.8/phonfieldwork/vignettes/phonfieldwork.Rmd |only phonfieldwork-0.0.8/phonfieldwork/vignettes/unnamed-chunk-10-1.png |only phonfieldwork-0.0.8/phonfieldwork/vignettes/unnamed-chunk-23-1.png |only phonfieldwork-0.0.8/phonfieldwork/vignettes/unnamed-chunk-25-1.png |only phonfieldwork-0.0.8/phonfieldwork/vignettes/unnamed-chunk-27-1.png |only phonfieldwork-0.0.8/phonfieldwork/vignettes/unnamed-chunk-29-1.png |only phonfieldwork-0.0.8/phonfieldwork/vignettes/unnamed-chunk-31-1.png |only phonfieldwork-0.0.8/phonfieldwork/vignettes/unnamed-chunk-33-1.png |only phonfieldwork-0.0.8/phonfieldwork/vignettes/unnamed-chunk-39-1.png |only phonfieldwork-0.0.8/phonfieldwork/vignettes/unnamed-chunk-40-1.png |only phonfieldwork-0.0.8/phonfieldwork/vignettes/unnamed-chunk-45-1.png |only phonfieldwork-0.0.8/phonfieldwork/vignettes/unnamed-chunk-46-1.png |only phonfieldwork-0.0.8/phonfieldwork/vignettes/unnamed-chunk-55-1.png |only 102 files changed, 2476 insertions(+), 1417 deletions(-)
Title: Miscellaneous Functions for Data Cleaning and Analysis
Description: Provides functions needed for data cleaning and
formatting and forms data cleaning and wrangling backend for the
following packages: 'broomExtra', 'ggstatsplot', 'groupedstats',
'pairwiseComparisons', 'statsExpressions', and 'tidyBF'.
Author: Indrajeet Patil [aut, cre, cph]
(<https://orcid.org/0000-0003-1995-6531>)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between ipmisc versions 4.0.0 dated 2020-10-05 and 4.1.0 dated 2020-10-25
DESCRIPTION | 6 MD5 | 16 - NAMESPACE | 4 NEWS.md | 6 R/global_vars.R | 211 ----------------- R/long_to_wide_converter.R | 53 +++- README.md | 36 +-- man/long_to_wide_converter.Rd | 38 ++- tests/testthat/test-long_to_wide_converter.R | 319 +++++++++++++++++++++++++++ 9 files changed, 426 insertions(+), 263 deletions(-)
Title: Indices of Effect Size and Standardized Parameters
Description: Provide utilities to work with indices of effect size and standardized parameters for a wide variety of models (see support list of insight; Lüdecke, Waggoner & Makowski (2019) <doi:10.21105/joss.01412>), allowing computation and conversion of indices such as Cohen's d, r, odds, etc.
Author: Mattan S. Ben-Shachar [aut, cre]
(<https://orcid.org/0000-0002-4287-4801>),
Dominique Makowski [aut] (<https://orcid.org/0000-0001-5375-9967>),
Daniel Lüdecke [aut] (<https://orcid.org/0000-0002-8895-3206>),
Ken Kelley [ctb],
David Stanley [ctb]
Maintainer: Mattan S. Ben-Shachar <matanshm@post.bgu.ac.il>
Diff between effectsize versions 0.3.3 dated 2020-09-17 and 0.4.0 dated 2020-10-25
effectsize-0.3.3/effectsize/R/interpret_odds.R |only effectsize-0.3.3/effectsize/R/standardize.data.frame.R |only effectsize-0.3.3/effectsize/inst/doc/logistic.R |only effectsize-0.3.3/effectsize/inst/doc/logistic.Rmd |only effectsize-0.3.3/effectsize/inst/doc/logistic.html |only effectsize-0.3.3/effectsize/man/interpret_odds.Rd |only effectsize-0.3.3/effectsize/tests/testthat/test-effectsize.htest.R |only effectsize-0.3.3/effectsize/tests/testthat/test-standardize.R |only effectsize-0.3.3/effectsize/vignettes/logistic.Rmd |only effectsize-0.4.0/effectsize/DESCRIPTION | 19 effectsize-0.4.0/effectsize/MD5 | 206 +- effectsize-0.4.0/effectsize/NAMESPACE | 30 effectsize-0.4.0/effectsize/NEWS.md | 45 effectsize-0.4.0/effectsize/R/cohens_d.R | 2 effectsize-0.4.0/effectsize/R/convert_OR_to_RR.R |only effectsize-0.4.0/effectsize/R/convert_chisq.R | 99 - effectsize-0.4.0/effectsize/R/convert_d_to_r.R | 2 effectsize-0.4.0/effectsize/R/convert_tF_to_pve.R | 79 - effectsize-0.4.0/effectsize/R/datasets.R |only effectsize-0.4.0/effectsize/R/effectsize.R | 143 +- effectsize-0.4.0/effectsize/R/eta_squared.R | 597 ++++++-- effectsize-0.4.0/effectsize/R/eta_squared_posterior.R | 50 effectsize-0.4.0/effectsize/R/interpret.R | 40 effectsize-0.4.0/effectsize/R/interpret_bayesian_indices.R | 57 effectsize-0.4.0/effectsize/R/interpret_bf.R | 72 - effectsize-0.4.0/effectsize/R/interpret_cfa_fit.R | 165 +- effectsize-0.4.0/effectsize/R/interpret_d.R | 61 effectsize-0.4.0/effectsize/R/interpret_direction.R | 2 effectsize-0.4.0/effectsize/R/interpret_oddsratio.R |only effectsize-0.4.0/effectsize/R/interpret_omega_squared.R | 56 effectsize-0.4.0/effectsize/R/interpret_p.R | 36 effectsize-0.4.0/effectsize/R/interpret_r.R | 88 - effectsize-0.4.0/effectsize/R/interpret_r2.R | 52 effectsize-0.4.0/effectsize/R/interpret_rope.R | 57 effectsize-0.4.0/effectsize/R/is_effectsize_name.R | 35 effectsize-0.4.0/effectsize/R/phi_cramers_v.R | 137 + effectsize-0.4.0/effectsize/R/print.effectsize_difference.R | 2 effectsize-0.4.0/effectsize/R/print.effectsize_table.R | 5 effectsize-0.4.0/effectsize/R/print.equivalence_test_effectsize.R | 18 effectsize-0.4.0/effectsize/R/print.rules.R | 36 effectsize-0.4.0/effectsize/R/ranktransform.R | 5 effectsize-0.4.0/effectsize/R/standardize.R | 52 effectsize-0.4.0/effectsize/R/standardize.data.R |only effectsize-0.4.0/effectsize/R/standardize.models.R | 125 + effectsize-0.4.0/effectsize/R/standardize_info.R | 126 + effectsize-0.4.0/effectsize/R/standardize_parameters.R | 715 +++++++--- effectsize-0.4.0/effectsize/R/utils_interpret.R |only effectsize-0.4.0/effectsize/R/utils_ncp_ci.R | 26 effectsize-0.4.0/effectsize/R/utils_standardize.R |only effectsize-0.4.0/effectsize/R/utils_values_aov.R | 9 effectsize-0.4.0/effectsize/R/zzz_depricated.R | 24 effectsize-0.4.0/effectsize/README.md | 138 + effectsize-0.4.0/effectsize/build/partial.rdb |binary effectsize-0.4.0/effectsize/build/vignette.rds |binary effectsize-0.4.0/effectsize/data |only effectsize-0.4.0/effectsize/inst/doc/anovaES.R |only effectsize-0.4.0/effectsize/inst/doc/anovaES.Rmd |only effectsize-0.4.0/effectsize/inst/doc/anovaES.html |only effectsize-0.4.0/effectsize/inst/doc/bayesian_models.R |only effectsize-0.4.0/effectsize/inst/doc/bayesian_models.Rmd |only effectsize-0.4.0/effectsize/inst/doc/bayesian_models.html |only effectsize-0.4.0/effectsize/inst/doc/convert.R | 73 - effectsize-0.4.0/effectsize/inst/doc/convert.Rmd | 157 ++ effectsize-0.4.0/effectsize/inst/doc/convert.html | 152 ++ effectsize-0.4.0/effectsize/inst/doc/from_test_statistics.Rmd | 2 effectsize-0.4.0/effectsize/inst/doc/from_test_statistics.html | 28 effectsize-0.4.0/effectsize/inst/doc/interpret.Rmd | 286 +--- effectsize-0.4.0/effectsize/inst/doc/interpret.html | 318 ++-- effectsize-0.4.0/effectsize/inst/doc/standardize_data.R | 210 +- effectsize-0.4.0/effectsize/inst/doc/standardize_data.Rmd | 275 ++- effectsize-0.4.0/effectsize/inst/doc/standardize_data.html | 521 ++++--- effectsize-0.4.0/effectsize/inst/doc/standardize_parameters.R | 148 +- effectsize-0.4.0/effectsize/inst/doc/standardize_parameters.Rmd | 331 ++-- effectsize-0.4.0/effectsize/inst/doc/standardize_parameters.html | 548 ++++--- effectsize-0.4.0/effectsize/man/F_to_eta2.Rd | 18 effectsize-0.4.0/effectsize/man/chisq_to_phi.Rd | 17 effectsize-0.4.0/effectsize/man/d_to_r.Rd | 2 effectsize-0.4.0/effectsize/man/effectsize.Rd | 33 effectsize-0.4.0/effectsize/man/es_info.Rd | 2 effectsize-0.4.0/effectsize/man/eta_squared.Rd | 102 + effectsize-0.4.0/effectsize/man/eta_squared_posterior.Rd | 144 +- effectsize-0.4.0/effectsize/man/hardlyworking.Rd |only effectsize-0.4.0/effectsize/man/interpret.Rd | 60 effectsize-0.4.0/effectsize/man/interpret_bf.Rd | 45 effectsize-0.4.0/effectsize/man/interpret_d.Rd | 103 - effectsize-0.4.0/effectsize/man/interpret_ess.Rd | 31 effectsize-0.4.0/effectsize/man/interpret_gfi.Rd | 176 +- effectsize-0.4.0/effectsize/man/interpret_oddsratio.Rd |only effectsize-0.4.0/effectsize/man/interpret_omega_squared.Rd | 39 effectsize-0.4.0/effectsize/man/interpret_p.Rd | 29 effectsize-0.4.0/effectsize/man/interpret_parameters.Rd | 9 effectsize-0.4.0/effectsize/man/interpret_r.Rd | 103 - effectsize-0.4.0/effectsize/man/interpret_r2.Rd | 39 effectsize-0.4.0/effectsize/man/interpret_rope.Rd | 24 effectsize-0.4.0/effectsize/man/oddsratio_to_riskratio.Rd |only effectsize-0.4.0/effectsize/man/phi.Rd | 70 effectsize-0.4.0/effectsize/man/rules.Rd | 65 effectsize-0.4.0/effectsize/man/standardize.Rd | 64 effectsize-0.4.0/effectsize/man/standardize_info.Rd | 64 effectsize-0.4.0/effectsize/man/standardize_parameters.Rd | 57 effectsize-0.4.0/effectsize/tests/testthat/test-convert.R | 16 effectsize-0.4.0/effectsize/tests/testthat/test-cramers_v_etc.R | 69 effectsize-0.4.0/effectsize/tests/testthat/test-effectsize.R |only effectsize-0.4.0/effectsize/tests/testthat/test-es_from_statistic.R | 13 effectsize-0.4.0/effectsize/tests/testthat/test-eta_squared_etc.R | 213 ++ effectsize-0.4.0/effectsize/tests/testthat/test-eta_squared_posterior.R | 4 effectsize-0.4.0/effectsize/tests/testthat/test-interpret.R | 119 - effectsize-0.4.0/effectsize/tests/testthat/test-ranktransform.R | 9 effectsize-0.4.0/effectsize/tests/testthat/test-standardize-data.R |only effectsize-0.4.0/effectsize/tests/testthat/test-standardize-models.R |only effectsize-0.4.0/effectsize/tests/testthat/test-standardize_parameters.R | 187 ++ effectsize-0.4.0/effectsize/vignettes/anovaES.Rmd |only effectsize-0.4.0/effectsize/vignettes/bayesian_models.Rmd |only effectsize-0.4.0/effectsize/vignettes/bibliography.bib | 85 + effectsize-0.4.0/effectsize/vignettes/convert.Rmd | 157 ++ effectsize-0.4.0/effectsize/vignettes/from_test_statistics.Rmd | 2 effectsize-0.4.0/effectsize/vignettes/interpret.Rmd | 286 +--- effectsize-0.4.0/effectsize/vignettes/standardize_data.Rmd | 275 ++- effectsize-0.4.0/effectsize/vignettes/standardize_parameters.Rmd | 331 ++-- 119 files changed, 6442 insertions(+), 3080 deletions(-)
Title: Non-Parametric Multiple Change-Point Analysis of Multivariate
Data
Description: Implements various procedures for finding
multiple change-points from Matteson D. et al (2013)
<doi:10.1080/01621459.2013.849605>, Zhang W. et al (2017)
<doi:10.1109/ICDMW.2017.44>, Arlot S. et al (2019).
Two methods make use of dynamic
programming and pruning, with no distributional
assumptions other than the existence of certain absolute
moments in one method. Hierarchical and exact search methods
are included. All methods return the set of estimated change-
points as well as other summary information.
Author: Nicholas A. James, Wenyu Zhang and David S. Matteson
Maintainer: Wenyu Zhang <wz258@cornell.edu>
Diff between ecp versions 3.1.2 dated 2019-11-11 and 3.1.3 dated 2020-10-25
DESCRIPTION | 13 ++++++++----- MD5 | 12 ++++++------ NAMESPACE | 2 +- NEWS | 6 ++++++ build/vignette.rds |binary inst/CITATION | 4 ++-- man/kernelCPA.rd | 2 +- 7 files changed, 24 insertions(+), 15 deletions(-)
Title: Deep Time Redox Analysis of the Geobiology Ontology Network
Description: Create, visualize, manipulate, and analyze bipartite mineral-chemistry
networks for set of focal element(s) across deep-time on Earth. The method is
described in Spielman and Moore (2020) <doi:10.3389/feart.2020.585087>.
Author: Stephanie J. Spielman [aut, cre]
(<https://orcid.org/0000-0002-9090-4788>)
Maintainer: Stephanie J. Spielman <spielman@rowan.edu>
Diff between dragon versions 1.0.3 dated 2020-09-29 and 1.0.4 dated 2020-10-25
dragon-1.0.3/dragon/R/utils_palette.R |only dragon-1.0.4/dragon/DESCRIPTION | 8 dragon-1.0.4/dragon/MD5 | 15 dragon-1.0.4/dragon/R/sysdata.rda |binary dragon-1.0.4/dragon/build/vignette.rds |binary dragon-1.0.4/dragon/inst/doc/dragon.R | 9 dragon-1.0.4/dragon/inst/doc/dragon.Rmd | 86 +-- dragon-1.0.4/dragon/inst/doc/dragon.html | 783 ++++++++++++++----------------- dragon-1.0.4/dragon/vignettes/dragon.Rmd | 86 +-- 9 files changed, 448 insertions(+), 539 deletions(-)
Title: Lookup Tables to Generate Poverty Likelihoods and Rates using
the Poverty Probability Index (PPI)
Description: The Poverty Probability Index (PPI) is a poverty measurement tool
for organizations and businesses with a mission to serve the poor. The PPI
is statistically-sound, yet simple to use: the answers to 10 questions about
a household’s characteristics and asset ownership are scored to compute the
likelihood that the household is living below the poverty line – or above by
only a narrow margin. This package contains country-specific lookup data tables
used as reference to determine the poverty likelihood of a household based
on their score from the country-specific PPI questionnaire. These lookup
tables have been extracted from documentation of the PPI found at
<https://www.povertyindex.org> and managed by Innovations for Poverty Action
<https://www.poverty-action.org>.
Author: Ernest Guevarra [aut, cre] (<https://orcid.org/0000-0002-4887-4415>)
Maintainer: Ernest Guevarra <ernestgmd@gmail.com>
Diff between ppitables versions 0.5.3 dated 2020-09-20 and 0.5.4 dated 2020-10-25
DESCRIPTION | 6 - MD5 | 20 +-- NEWS.md | 13 ++ R/data.R | 54 +++++++++ R/sysdata.rda |binary README.md | 218 ++++++++++++++++++++------------------- data/ppiIDN2020.rda |only inst/WORDLIST | 2 inst/_pkgdown.yml | 13 +- man/ppiIDN2020.Rd |only tests/testthat/test_find_table.R | 2 tests/testthat/test_get_table.R | 2 12 files changed, 208 insertions(+), 122 deletions(-)
Title: Indices and Graphics for Assess Seed Germination Process
Description: A collection of different indices and visualization techniques for evaluate the seed germination process in ecophysiological studies (Lozano-Isla et al. 2019) <doi:10.1111/1440-1703.1275>.
Author: Flavio Lozano-Isla [aut, cre] (<https://orcid.org/0000-0002-0714-669X>),
Omar Benites Alfaro [aut] (<https://orcid.org/0000-0002-6852-9598>),
Denise Garcia de Santana [aut],
Marli A. Ranal [aut],
Marcelo F. Pompelli [aut, ths]
(<https://orcid.org/0000-0002-4408-6374>),
Federal University of Pernambuco [cph] (Register of application),
Federal Rural University of Pernambuco [cph] (Post Graduate Program)
Maintainer: Flavio Lozano-Isla <flavjack@gmail.com>
Diff between GerminaR versions 2.0.0 dated 2020-09-01 and 2.0.1 dated 2020-10-25
GerminaR-2.0.0/GerminaR/inst/GerminaQuant/setup.R |only GerminaR-2.0.0/GerminaR/inst/GerminaQuant/www/GerminaR.png |only GerminaR-2.0.0/GerminaR/inst/GerminaQuant/www/GerminaR2.png |only GerminaR-2.0.0/GerminaR/inst/GerminaQuant/www/favicon |only GerminaR-2.0.0/GerminaR/inst/GerminaQuant/www/favicon.zip |only GerminaR-2.0.0/GerminaR/inst/GerminaQuant/www/germinaquant.png |only GerminaR-2.0.0/GerminaR/inst/GerminaQuant/www/ufpe.png |only GerminaR-2.0.0/GerminaR/inst/GerminaQuant/www/ufrpe.png |only GerminaR-2.0.0/GerminaR/vignettes/GerminaR_files |only GerminaR-2.0.1/GerminaR/DESCRIPTION | 10 GerminaR-2.0.1/GerminaR/LICENSE | 2 GerminaR-2.0.1/GerminaR/MD5 | 75 - GerminaR-2.0.1/GerminaR/NAMESPACE | 134 +- GerminaR-2.0.1/GerminaR/NEWS.md | 38 GerminaR-2.0.1/GerminaR/R/GerminaQuant.R | 12 GerminaR-2.0.1/GerminaR/R/osmp.R | 2 GerminaR-2.0.1/GerminaR/README.md | 61 - GerminaR-2.0.1/GerminaR/build/vignette.rds |binary GerminaR-2.0.1/GerminaR/inst/GerminaQuant/rsconnect/shinyapps.io/flavjack/germinaquant.dcf | 4 GerminaR-2.0.1/GerminaR/inst/GerminaQuant/server.R | 20 GerminaR-2.0.1/GerminaR/inst/GerminaQuant/ui.R | 23 GerminaR-2.0.1/GerminaR/inst/doc/GerminaR.R | 138 +- GerminaR-2.0.1/GerminaR/inst/doc/GerminaR.Rmd | 211 ++- GerminaR-2.0.1/GerminaR/inst/doc/GerminaR.html | 544 +++------- GerminaR-2.0.1/GerminaR/inst/doc/coding.R |only GerminaR-2.0.1/GerminaR/inst/doc/coding.Rmd |only GerminaR-2.0.1/GerminaR/inst/doc/coding.html |only GerminaR-2.0.1/GerminaR/man/GerminaQuant.Rd | 5 GerminaR-2.0.1/GerminaR/man/figures |only GerminaR-2.0.1/GerminaR/vignettes/GerminaR.Rmd | 211 ++- GerminaR-2.0.1/GerminaR/vignettes/coding.Rmd |only GerminaR-2.0.1/GerminaR/vignettes/files |only 32 files changed, 843 insertions(+), 647 deletions(-)
Title: Projection Based Clustering
Description: A clustering approach applicable to every projection method is proposed here. The two-dimensional scatter plot of any projection method can construct a topographic map which displays unapparent data structures by using distance and density information of the data. The generalized U*-matrix renders this visualization in the form of a topographic map, which can be used to automatically define the clusters of high-dimensional data. The whole system is based on Thrun and Ultsch, "Using Projection based Clustering to Find Distance and Density based Clusters in High-Dimensional Data" <DOI:10.1007/s00357-020-09373-2>. Selecting the correct projection method will result in a visualization in which mountains surround each cluster. The number of clusters can be determined by counting valleys on the topographic map. Most projection methods are wrappers for already available methods in R. By contrast, the neighbor retrieval visualizer (NeRV) is based on C++ source code of the 'dredviz' software package, and the Curvilinear Component Analysis (CCA) is translated from 'MATLAB' ('SOM Toolbox' 2.0) to R.
Author: Michael Thrun [aut, cre, cph],
Florian Lerch [aut],
Felix Pape [aut],
Tim Schreier [aut],
Luis Winckelmann [aut],
Kristian Nybo [cph],
Jarkko Venna [cph]
Maintainer: Michael Thrun <m.thrun@gmx.net>
Diff between ProjectionBasedClustering versions 1.1.2 dated 2020-08-25 and 1.1.5 dated 2020-10-25
DESCRIPTION | 10 MD5 | 46 NAMESPACE | 3 R/ICA.R | 17 R/Isomap.R | 18 R/PolarSwarm.R |only R/RcppExports.R | 46 R/SammonsMapping.R | 18 R/UniformManifoldApproximationProjection.R |only R/interactiveGeneralizedUmatrixIsland.R | 1725 +++++++++++++------------- R/interactiveProjectionBasedClustering.R | 1471 ++++++++++++---------- R/tSNE.R | 30 man/CCA.Rd | 3 man/Hepta.Rd | 6 man/ICA.Rd | 5 man/Isomap.Rd | 3 man/MDS.Rd | 7 man/NeRV.rd | 5 man/PCA.Rd | 5 man/PolarSwarm.Rd |only man/ProjectionPursuit.Rd | 8 man/SammonsMapping.Rd | 5 man/UniformManifoldApproximationProjection.Rd |only man/interactiveGeneralizedUmatrixIsland.Rd | 114 - man/interactiveProjectionBasedClustering.Rd | 140 +- man/tSNE.Rd | 7 26 files changed, 1982 insertions(+), 1710 deletions(-)
More information about ProjectionBasedClustering at CRAN
Permanent link
Title: Credible Visualization for Two-Dimensional Projections of Data
Description: Projections are common dimensionality reduction methods, which represent high-dimensional data in a two-dimensional space. However, when restricting the output space to two dimensions, which results in a two dimensional scatter plot (projection) of the data, low dimensional similarities do not represent high dimensional distances coercively [Thrun, 2018] <DOI: 10.1007/978-3-658-20540-9>. This could lead to a misleading interpretation of the underlying structures [Thrun, 2018]. By means of the 3D topographic map the generalized Umatrix is able to depict errors of these two-dimensional scatter plots. The package is derived from the book of Thrun, M.C.: "Projection Based Clustering through Self-Organization and Swarm Intelligence" (2018) <DOI:10.1007/978-3-658-20540-9> and the main algorithm called simplified self-organizing map for dimensionality reduction methods is published in <DOI: 10.1016/j.mex.2020.101093>.
Author: Michael Thrun [aut, cre, cph] (<https://orcid.org/0000-0001-9542-5543>),
Felix Pape [ctb, ctr],
Tim Schreier [ctb, ctr],
Luis Winckelman [ctb, ctr],
Alfred Ultsch [ths]
Maintainer: Michael Thrun <m.thrun@gmx.net>
Diff between GeneralizedUmatrix versions 1.2.0 dated 2020-08-24 and 1.2.1 dated 2020-10-25
DESCRIPTION | 10 MD5 | 41 + NAMESPACE | 1 R/ExtendToroidalUmatrix.R |only R/GeneralizedUmatrix.R | 6 R/TopviewTopographicMap.R | 785 +++++++++++++++++++------------------- R/plotTopographicMap.R | 15 R/sESOM4BMUs.R | 201 ++++----- build/partial.rdb |binary build/vignette.rds |binary inst/doc/GeneralizedUmatrix.Rmd | 18 inst/doc/GeneralizedUmatrix.html | 23 - man/Chainlink.Rd | 13 man/ExtendToroidalUmatrix.Rd |only man/GeneralizedUmatrix-package.Rd | 4 man/GeneralizedUmatrix.Rd | 182 ++++---- man/TopviewTopographicMap.Rd | 176 ++++---- man/plotTopographicMap.Rd | 1 man/sESOM4BMUs.Rd | 4 src/RcppExports.cpp | 12 src/packagename_init.c |only src/trainstepC.cpp | 10 vignettes/GeneralizedUmatrix.Rmd | 18 23 files changed, 765 insertions(+), 755 deletions(-)
More information about GeneralizedUmatrix at CRAN
Permanent link
Title: Gamma and Exponential Generalized Linear Models with Elastic Net
Penalty
Description: Implements the fast iterative shrinkage-thresholding algorithm
(FISTA) algorithm to fit a Gamma distribution with an elastic net
penalty as described in Chen, Arakvin and Martin (2018)
<arxiv:1804.07780>. An implementation for the case of the
exponential distribution is also available, with details available
in Chen and Martin (2018) <https://papers.ssrn.com/abstract_id=3085672>.
Author: Anthony Christidis <anthony.christidis@stat.ubc.ca>,
Xin Chen <chenx26@uw.edu>,
Daniel Hanson <hansondj@uw.edu>
Maintainer: Anthony Christidis <anthony.christidis@stat.ubc.ca>
Diff between RPEGLMEN versions 1.0.1 dated 2020-01-13 and 1.1.0 dated 2020-10-25
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NAMESPACE | 1 - NEWS.md | 2 ++ R/glmGammaNet.R | 5 ++--- R/glmnet_exp.R | 2 +- man/fit.glmGammaNet.Rd | 2 +- man/glmnet_exp.Rd | 2 +- 8 files changed, 19 insertions(+), 19 deletions(-)
Title: Shared Tools for Tracking Data
Description: A collection of commonly used tools for animal movement and other tracking
data. Variously distance, angle, bearing, distance-to, bearing-to and speed are
provided for geographic data that can be used directly or within 'tidyverse'
syntax. Distances and bearings are calculated using modern geodesic methods as
provided by Charles F. F. Karney (2013) <doi:10.1007/s00190-012-0578-z>
via the 'geodist' and 'geosphere' packages.
Author: Michael Sumner [aut, cre] (<https://orcid.org/0000-0002-2471-7511>)
Maintainer: Michael Sumner <mdsumner@gmail.com>
Diff between traipse versions 0.1.0 dated 2019-07-02 and 0.2.0 dated 2020-10-25
DESCRIPTION | 12 +- MD5 | 59 ++++++----- NAMESPACE | 4 NEWS.md | 11 ++ R/track_angle.R | 2 R/track_bearing.R | 2 R/track_bearing_to.R | 7 - R/track_distance.R | 15 +- R/track_distance_to.R | 7 - R/track_intermediate.R |only R/track_query.R |only R/track_speed.R | 2 R/track_time.R | 12 +- R/track_turn.R | 12 +- README.md | 155 ++++++++++++++++++++++++------ inst/WORDLIST | 8 + man/figures/README-dest-point-1.png |binary man/figures/README-example-group_by-1.png |binary man/figures/README-example-group_by-2.png |binary man/figures/README-example-group_by-3.png |binary man/figures/README-intermediate-1.png |only man/figures/README-intermediate-2.png |only man/track_angle.Rd | 2 man/track_bearing.Rd | 4 man/track_bearing_to.Rd | 9 - man/track_distance.Rd | 14 +- man/track_distance_to.Rd | 7 - man/track_intermediate.Rd |only man/track_query.Rd |only man/track_speed.Rd | 2 man/track_time.Rd | 12 +- man/track_turn.Rd | 12 +- man/traipse-package.Rd | 2 tests/testthat/test-intermediates.R |only 34 files changed, 258 insertions(+), 114 deletions(-)
Title: Interface to 'Python'
Description: Interface to 'Python' modules, classes, and functions. When calling
into 'Python', R data types are automatically converted to their equivalent 'Python'
types. When values are returned from 'Python' to R they are converted back to R
types. Compatible with all versions of 'Python' >= 2.7.
Author: Kevin Ushey [aut, cre],
JJ Allaire [aut],
RStudio [cph, fnd],
Yuan Tang [aut, cph] (<https://orcid.org/0000-0001-5243-233X>),
Dirk Eddelbuettel [ctb, cph],
Bryan Lewis [ctb, cph],
Sigrid Keydana [ctb],
Ryan Hafen [ctb, cph],
Marcus Geelnard [ctb, cph] (TinyThread library,
http://tinythreadpp.bitsnbites.eu/)
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between reticulate versions 1.17 dated 2020-10-21 and 1.18 dated 2020-10-25
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 5 +++++ inst/config/config.py | 10 ++++++++-- 4 files changed, 19 insertions(+), 8 deletions(-)
Title: Tools for Easier Analysis of Meteorological Fields
Description: Many useful functions and extensions for dealing
with meteorological data in the tidy data framework. Extends 'ggplot2'
for better plotting of scalar and vector fields and provides commonly
used analysis methods in the atmospheric sciences.
Author: Elio Campitelli [cre, aut] (<https://orcid.org/0000-0002-7742-9230>)
Maintainer: Elio Campitelli <elio.campitelli@cima.fcen.uba.ar>
Diff between metR versions 0.7.0 dated 2020-04-10 and 0.8.0 dated 2020-10-25
DESCRIPTION | 12 MD5 | 207 NAMESPACE | 17 NEWS.md | 45 R/Derivate.R | 6 R/EOF.R | 9 R/EOF_methods.R | 14 R/FitLm.R | 74 R/FitWave.R | 2 R/GetSMNData.R | 21 R/GetTopography.R | 29 R/Impute2D.R | 9 R/ImputeEOF.R | 1 R/Interpolate.R | 21 R/ReadNetCDF.R | 38 R/RepeatCircular.R | 3 R/Tajectory.R | 26 R/WaveFlux.R | 17 R/geom_arrow.R | 337 R/geom_contour2.r | 2 R/geom_contour_fill.R | 14 R/geom_contour_tanaka.R | 3 R/geom_label_contour.R | 8 R/geom_relief.R | 2 R/geom_shadow.R | 2 R/geom_streamline.R | 12 R/geom_text_contour.R | 161 R/geopotential.R | 2 R/guide_colorstrip.R | 2 R/guide_vector.R | 36 R/helpfunctions.R | 61 R/label-placement.R |only R/scale_longitude.R | 6 R/scale_vector.R | 12 R/stat_contour2.r | 178 R/stat_contour_fill.R | 176 R/stat_na.R | 1 R/stat_subset.R | 1 R/surface.R |only R/temperature.R | 2 R/textContourGrob.R | 251 R/theme_fields.R | 16 README.md | 7 build/vignette.rds |binary data/surface.rda |only inst/CITATION |only inst/doc/Visualization-tools.R | 105 inst/doc/Visualization-tools.Rmd | 170 inst/doc/Visualization-tools.html | 490 - inst/doc/Working-with-data.R | 1 inst/doc/Working-with-data.Rmd | 3 inst/doc/Working-with-data.html | 446 - man/EOF.Rd | 4 man/FitLm.Rd | 6 man/GetTopography.Rd | 2 man/ImputeEOF.Rd | 2 man/MakeBreaks.Rd | 2 man/ReadNetCDF.Rd | 5 man/contour_placement.Rd |only man/figures/field-1.png |binary man/geom_arrow.Rd | 8 man/geom_contour2.Rd | 4 man/geom_contour_fill.Rd | 12 man/geom_contour_tanaka.Rd | 3 man/geom_relief.Rd | 2 man/geom_streamline.Rd | 8 man/geom_text_contour.Rd | 41 man/geopotential.Rd | 2 man/guide_colourstrip.Rd | 8 man/guide_vector.Rd | 6 man/scale_divergent.Rd | 12 man/scale_longitude.Rd | 2 man/scale_mag.Rd | 23 man/surface.Rd |only man/temperature.Rd | 2 tests/figs/arrows |only tests/figs/contour-fill/contour-fill-base-stat.svg | 31 tests/figs/contour-fill/contour-fill-base.svg | 31 tests/figs/contour-fill/contour-fill-fill.svg | 31 tests/figs/contour-fill/contour-fill-nofill.svg | 42 tests/figs/deps.txt | 2 tests/figs/stat-contour2/contour2-base-geom.svg | 20 tests/figs/stat-contour2/contour2-base-stat.svg | 20 tests/figs/stat-contour2/contour2-fun.svg | 20 tests/figs/stat-contour2/contour2-global-breaks-full.svg | 69 tests/figs/stat-contour2/contour2-global-breaks.svg | 12 tests/figs/streamline/streamline-base.svg | 5360 ++++--------- tests/figs/streamline/streamline-xwrapped.svg | 5870 ++++----------- tests/figs/streamline/streamline-ywrapped.svg | 5580 ++++---------- tests/figs/vis-arrow |only tests/testthat/Rplots.pdf |binary tests/testthat/needs_scale.nc |only tests/testthat/test-GetSMNData.R |only tests/testthat/test-GetTopography.R |only tests/testthat/test-ReadNetCDF.R | 1 tests/testthat/test-fitlm.R | 26 tests/testthat/test-vis-arrow.R |only tests/testthat/test-vis-contour2.R | 4 tests/testthat/test-vis-contour_fill.R | 3 tests/testthat/test-vis-streamline.R | 14 tests/testthat/test-waveflux.R |only tests/testthat/test_text_contour.R | 8 tests/testthat/topography |only tests/testthat/waveflux-return |only vignettes/Visualization-tools.Rmd | 170 vignettes/Working-with-data.Rmd | 3 106 files changed, 7503 insertions(+), 13026 deletions(-)
Title: Estimated Marginal Means, aka Least-Squares Means
Description: Obtain estimated marginal means (EMMs) for many linear, generalized
linear, and mixed models. Compute contrasts or linear functions of EMMs,
trends, and comparisons of slopes. Plots and other displays.
Least-squares means are discussed, and the term "estimated marginal means"
is suggested, in Searle, Speed, and Milliken (1980) Population marginal means
in the linear model: An alternative to least squares means, The American
Statistician 34(4), 216-221 <doi:10.1080/00031305.1980.10483031>.
Author: Russell Lenth [aut, cre, cph],
Paul Buerkner [ctb],
Maxime Herve [ctb],
Jonathon Love [ctb],
Hannes Riebl [ctb],
Henrik Singmann [ctb]
Maintainer: Russell Lenth <russell-lenth@uiowa.edu>
Diff between emmeans versions 1.5.2 dated 2020-10-24 and 1.5.2-1 dated 2020-10-25
DESCRIPTION | 8 ++++---- MD5 | 32 ++++++++++++++++---------------- R/countreg-support.R | 4 ++-- inst/doc/FAQs.html | 6 +++--- inst/doc/basics.html | 4 ++-- inst/doc/comparisons.html | 8 ++++---- inst/doc/confidence-intervals.html | 18 +++++++++--------- inst/doc/interactions.html | 16 ++++++++-------- inst/doc/messy-data.html | 4 ++-- inst/doc/models.html | 4 ++-- inst/doc/predictions.html | 4 ++-- inst/doc/sophisticated.html | 4 ++-- inst/doc/transformations.html | 4 ++-- inst/doc/utilities.html | 4 ++-- inst/doc/vignette-topics.html | 4 ++-- inst/doc/xplanations.html | 4 ++-- inst/doc/xtending.html | 8 ++++---- 17 files changed, 68 insertions(+), 68 deletions(-)
Title: Confidence or Prediction Intervals, Quantiles, and Probabilities
for Statistical Models
Description: Functions to append confidence intervals, prediction intervals,
and other quantities of interest to data frames. All appended quantities
are for the response variable, after conditioning on the model and covariates.
This package has a data frame first syntax that allows for easy piping.
Currently supported models include (log-) linear, (log-) linear mixed,
generalized linear models, generalized linear mixed models, and
accelerated failure time models.
Author: John Haman [cre, aut],
Matthew Avery [aut],
Institute for Defense Analyses [cph]
Maintainer: John Haman <jhaman@ida.org>
Diff between ciTools versions 0.6.0 dated 2020-09-04 and 0.6.1 dated 2020-10-25
DESCRIPTION | 6 - MD5 | 16 +-- R/add_ci_glm.R | 3 R/add_ci_negbin.R | 9 + R/add_pi_negbin.R | 1 R/add_pi_survreg.R | 163 +++++++++++++++++---------------- R/add_probs_survreg.R | 2 inst/doc/ciTools-glm-vignette.html | 4 inst/doc/ciTools_survreg_vignette.html | 6 - 9 files changed, 109 insertions(+), 101 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-03-21 0.99