Title: Tools to Analyze 'Sistec' Datasets
Description: The Brazilian system for diploma registration and validation on technical and superior
courses are managing by 'Sistec' platform, see <https://sistec.mec.gov.br/>. This package provides
tools for Brazilian institutions to update the student's registration and make data analysis
about their situation, retention and drop out.
Author: Samuel Macêdo [aut, cre],
Carlos Patrício [aut],
Cássio Santos [aut],
Clécio Santos [aut],
Tiago Spiandorello [ctb]
Maintainer: Samuel Macêdo <samuelmacedo@recife.ifpe.edu.br>
Diff between sistec versions 0.1.0 dated 2020-06-17 and 0.2.0 dated 2020-10-26
sistec-0.1.0/sistec/tests/testthat/test-read_files.R |only sistec-0.2.0/sistec/DESCRIPTION | 9 sistec-0.2.0/sistec/MD5 | 100 +- sistec-0.2.0/sistec/NAMESPACE | 43 - sistec-0.2.0/sistec/NEWS.md | 80 + sistec-0.2.0/sistec/R/aria.R | 283 +++--- sistec-0.2.0/sistec/R/aria_aws.R |only sistec-0.2.0/sistec/R/aria_desktop_build.R |only sistec-0.2.0/sistec/R/aria_ui.R |only sistec-0.2.0/sistec/R/aria_utils.R |only sistec-0.2.0/sistec/R/compare_sistec.R | 80 + sistec-0.2.0/sistec/R/compare_sistec_rfept.R | 40 sistec-0.2.0/sistec/R/compare_situation.R | 122 +- sistec-0.2.0/sistec/R/compare_utils.R | 408 ++++++---- sistec-0.2.0/sistec/R/merge_sistec_rfept.R | 135 ++- sistec-0.2.0/sistec/R/output_screen.R | 154 ++- sistec-0.2.0/sistec/R/read_files_utils.R | 37 sistec-0.2.0/sistec/R/read_linked_courses.R |only sistec-0.2.0/sistec/R/read_qacademico.R | 213 ++--- sistec-0.2.0/sistec/R/read_rfept.R | 120 +- sistec-0.2.0/sistec/R/read_sigaa.R | 299 ++++--- sistec-0.2.0/sistec/R/read_sistec.R | 382 ++++----- sistec-0.2.0/sistec/R/rename_comparison_list.R | 251 +++--- sistec-0.2.0/sistec/R/shiny_utils.R | 64 - sistec-0.2.0/sistec/R/sistec_app.R | 250 +++--- sistec-0.2.0/sistec/R/write_output.R | 392 +++++---- sistec-0.2.0/sistec/README.md | 256 +++--- sistec-0.2.0/sistec/inst/extdata/co_unidade_ensino/co_unidade_ensino.csv | 80 - sistec-0.2.0/sistec/inst/extdata/desktop_version |only sistec-0.2.0/sistec/inst/extdata/docs |only sistec-0.2.0/sistec/inst/extdata/examples/linked_courses |only sistec-0.2.0/sistec/inst/extdata/examples/qacademico/fake_data_qacademico.csv | 402 ++++----- sistec-0.2.0/sistec/inst/extdata/examples/sigaa/fake_data_sigaa.csv | 402 ++++----- sistec-0.2.0/sistec/inst/extdata/examples/sistec/fake_data_sistec.csv | 402 ++++----- sistec-0.2.0/sistec/inst/extdata/shiny/period_input.csv | 46 - sistec-0.2.0/sistec/man/aria.Rd | 83 +- sistec-0.2.0/sistec/man/aria_aws.Rd |only sistec-0.2.0/sistec/man/aria_desktop_build.Rd |only sistec-0.2.0/sistec/man/compare_sistec.Rd | 85 +- sistec-0.2.0/sistec/man/read_linked_courses.Rd |only sistec-0.2.0/sistec/man/read_qacademico.Rd | 86 +- sistec-0.2.0/sistec/man/read_rfept.Rd | 84 +- sistec-0.2.0/sistec/man/read_sigaa.Rd | 93 +- sistec-0.2.0/sistec/man/read_sistec.Rd | 100 +- sistec-0.2.0/sistec/man/sistec_app.Rd | 80 - sistec-0.2.0/sistec/man/write_output.Rd | 44 - sistec-0.2.0/sistec/tests/testthat.R | 8 sistec-0.2.0/sistec/tests/testthat/helper-initialize.R | 206 +++-- sistec-0.2.0/sistec/tests/testthat/test-1-download_test_datasets.R | 18 sistec-0.2.0/sistec/tests/testthat/test-comparison.R | 45 - sistec-0.2.0/sistec/tests/testthat/test-output_screen.R | 52 - sistec-0.2.0/sistec/tests/testthat/test-read_rfept.R |only sistec-0.2.0/sistec/tests/testthat/test-read_sistec.R |only sistec-0.2.0/sistec/tools/manual |only sistec-0.2.0/sistec/tools/readme/aria_0.2.0.png |only sistec-0.2.0/sistec/tools/readme/brasil_icon.png |only 56 files changed, 3311 insertions(+), 2723 deletions(-)
Title: Fast Extraction from Raster Datasets using Polygons
Description: Provides a replacement for the 'extract' function from the 'raster' package
that is suitable for extracting raster values using 'sf' polygons.
Author: Daniel Baston [aut, cre],
ISciences, LLC [cph]
Maintainer: Daniel Baston <dbaston@isciences.com>
Diff between exactextractr versions 0.4.0 dated 2020-06-28 and 0.5.0 dated 2020-10-26
DESCRIPTION | 8 MD5 | 48 +- NAMESPACE | 1 NEWS.md | 12 R/RcppExports.R | 8 R/exact_extract.R | 283 ++++++++++++---- R/exact_resample.R |only README.md | 2 configure | 20 - configure.ac | 2 man/exact_extract.Rd | 82 ++++ man/exact_resample.Rd |only src/Makevars.in | 2 src/Makevars.win | 2 src/RcppExports.cpp | 23 + src/exact_extract.cpp | 153 +++++++- src/exactextract/CMakeLists.txt | 2 src/exactextract/src/operation.h | 2 src/exactextract/src/raster_cell_intersection.cpp | 161 ++++++++- src/exactextract/src/raster_cell_intersection.h | 5 src/exactextract/src/raster_stats.h | 29 + src/exactextract/src/weighted_quantiles.cpp |only src/exactextract/src/weighted_quantiles.h |only src/exactextract/test/test_raster_cell_intersection.cpp | 52 ++ src/exactextract/test/test_stats.cpp | 70 +++ tests/testthat/helper_functions.R |only tests/testthat/test_exact_extract.R | 266 ++++++++++++--- tests/testthat/test_exact_resample.R |only 28 files changed, 1047 insertions(+), 186 deletions(-)
Title: Efficient Phylogenetics on Large Trees
Description: Efficient phylogenetic analyses on massive phylogenies comprising up to millions of tips. Functions include pruning, rerooting, calculation of most-recent common ancestors, calculating distances from the tree root and calculating pairwise distances. Calculation of phylogenetic signal and mean trait depth (trait conservatism), ancestral state reconstruction and hidden character prediction of discrete characters, simulating and fitting models of trait evolution, fitting and simulating diversification models, dating trees, comparing trees, and reading/writing trees in Newick format. Citation: Louca, Stilianos and Doebeli, Michael (2017) <doi:10.1093/bioinformatics/btx701>.
Author: Stilianos Louca
Maintainer: Stilianos Louca <louca@zoology.ubc.ca>
Diff between castor versions 1.6.3 dated 2020-08-27 and 1.6.4 dated 2020-10-26
DESCRIPTION | 10 MD5 | 77 + NAMESPACE | 5 R/RcppExports.R | 48 - R/auxiliary_routines.R | 479 +++++++++++- R/count_transitions_between_clades.R |only R/extract_fasttree_constraints.R | 5 R/fit_hbd_model_on_grid.R | 11 R/fit_hbd_pdr_on_grid.R | 2 R/fit_hbd_psr_on_grid.R | 2 R/fit_hbds_model_on_grid.R | 43 - R/fit_hbds_model_parametric.R | 25 R/fit_mk.R | 235 +++--- R/fit_musse.R | 390 +++++++--- R/fit_sbm_const.R | 36 R/fit_sbm_linear.R | 44 - R/fit_sbm_on_grid.R |only R/fit_sbm_parametric.R | 104 +- R/fit_symmetric_mk.R |only R/generate_tree_hbds.R | 2 R/generate_tree_with_evolving_rates.R | 50 - R/get_pairwise_mrcas.R | 6 R/hsp_binomial.R | 6 R/is_monophyletic.R | 2 R/multifurcations_to_bifurcations.R | 3 R/simulate_deterministic_hbds.R | 1 R/simulate_dsse.R | 121 +-- R/simulate_musse.R | 22 man/count_transitions_between_clades.Rd |only man/fit_hbds_model_on_grid.Rd | 7 man/fit_hbds_model_parametric.Rd | 4 man/fit_mk.Rd | 53 + man/fit_musse.Rd | 24 man/fit_sbm_const.Rd | 20 man/fit_sbm_linear.Rd | 26 man/fit_sbm_on_grid.Rd |only man/fit_sbm_parametric.Rd | 34 man/generate_tree_with_evolving_rates.Rd | 24 man/simulate_deterministic_hbds.Rd | 6 man/simulate_dsse.Rd | 135 ++- src/RcppExports.cpp | 179 +++- src/phylogenetics_cpp_routines.cpp | 1196 +++++++++++++++++++++++++++---- 42 files changed, 2710 insertions(+), 727 deletions(-)
Title: Structural Equation Modeling and Confirmatory Network Analysis
Description: Multi-group (dynamical) structural equation models in combination with confirmatory network models from cross-sectional, time-series and panel data <doi:10.31234/osf.io/8ha93>. Allows for confirmatory testing and fit as well as exploratory model search.
Author: Sacha Epskamp
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Diff between psychonetrics versions 0.7.2 dated 2020-06-24 and 0.8 dated 2020-10-26
DESCRIPTION | 6 MD5 | 52 - NEWS | 16 R/01_classes.R | 297 +++--- R/02_algebrahelpers_spectralshift.R | 50 - R/03_modelformation_samplestats_norawts.R | 2 R/04_generalfit_loglikelihood_gauss.R | 231 ++--- R/05_MLestimator_fit_Gauss.R | 36 R/14_varcov_implied.R | 92 +- R/15_lvm_identify.R | 87 +- R/16_var1_derivatives.R | 363 ++++---- R/16_var1_implied.R | 147 +-- R/a_models_latentgrowth.R | 28 R/a_models_meta_varcov.R | 1296 +++++++++++++++--------------- R/b_modelexpansions_addMIs.R | 450 +++++----- R/c_runmodel.R | 19 R/e_modelmodifications_partialprune.R | 5 R/f_convenience_factorscores.R | 79 + R/f_convenience_getmatrix.R | 72 - R/h_modelsearch.R | 850 ++++++++++--------- build/partial.rdb |binary data/Jonas.RData |binary man/latentgrowth.Rd | 141 +-- man/runmodel.Rd | 153 +-- src/02_algebrahelpers_RcppHelpers.cpp | 6 src/04_generalfit_loglik_fimlcpp.cpp | 3 src/05_MLestimator_fit_Gauss_cpp.cpp | 4 27 files changed, 2311 insertions(+), 2174 deletions(-)
Title: Data Handling and Analysis in Macroecology
Description: Handling, processing, and analyzing geographic
data on species' distributions and environmental variables.
Read Vilela & Villalobos (2015) <doi: 10.1111/2041-210X.12401> for details.
Author: Bruno Vilela & Fabricio Villalobos
Maintainer: Bruno Vilela <bvilela.bv@gmail.com>
Diff between letsR versions 3.2 dated 2020-04-14 and 4.0 dated 2020-10-26
DESCRIPTION | 12 +++++----- MD5 | 33 ++++++++++++++++++++---------- R/letsR-package.R | 6 ++--- R/lets_midpoint.R | 7 ++---- R/lets_presab.R | 35 ++++++++++++++++++-------------- R/lets_presab_birds.R | 11 +++++----- README.md | 10 ++++----- inst/CITATION | 2 - man/lets.presab.Rd | 9 -------- man/letsR-package.Rd | 6 ++--- tests/testthat/Rplots.pdf |only tests/testthat/Rplots1.pdf |only tests/testthat/Rplots10.pdf |only tests/testthat/Rplots2.pdf |only tests/testthat/Rplots3.pdf |only tests/testthat/Rplots4.pdf |only tests/testthat/Rplots5.pdf |only tests/testthat/Rplots6.pdf |only tests/testthat/Rplots7.pdf |only tests/testthat/Rplots8.pdf |only tests/testthat/Rplots9.pdf |only tests/testthat/test-lets_presab.R | 16 +++++++------- tests/testthat/test-lets_presab_birds.R | 23 ++++++++------------- 23 files changed, 86 insertions(+), 84 deletions(-)
Title: Global Charcoal Database
Description: Contains the Global Charcoal database data. Data include charcoal
series (age, depth, charcoal quantity, associated units and methods) and
information on sedimentary sites (localisation, depositional environment, biome,
etc.) as well as publications informations. Since 4.0.0 the GCD mirrors the online SQL database at <http://paleofire.org>.
Author: Global Paleofire Working Group <paleofire@univ-fcomte.fr>
Maintainer: Olivier Blarquez <blarquez@gmail.com>
Diff between GCD versions 4.0.6 dated 2020-02-28 and 4.0.7 dated 2020-10-26
DESCRIPTION | 12 +++--- MD5 | 46 ++++++++++++++---------- NEWS | 47 ++++++++++++++++++++++++ R/GCD-package.R | 91 ++++++++++++++++++++++++++++++++++++++++++++---- data/basin_size.rda |only data/datalist | 4 ++ data/date.rda |binary data/date_type.rda |binary data/depo_context.rda |only data/lands_desc.rda |only data/mat_dated.rda |binary data/paleofiredata.rda |binary data/paleofiresites.rda |binary data/pub.rda |binary data/pub_key.rda |binary data/release.rda |binary data/site_type.rda |only man/basin_size.Rd |only man/charcoal_methods.Rd | 8 ++-- man/charcoal_units.Rd | 6 ++- man/date.Rd | 6 ++- man/date_type.Rd | 6 ++- man/depo_context.Rd |only man/lands_desc.Rd |only man/mat_dated.Rd | 6 ++- man/paleofiredata.Rd | 6 ++- man/paleofiresites.Rd | 21 +++++++---- man/site_type.Rd |only 28 files changed, 208 insertions(+), 51 deletions(-)
Title: Embedded JavaScript and WebAssembly Engine for R
Description: An R interface to V8: Google's open source JavaScript and WebAssembly
engine. This package can be compiled either with V8 version 6 and up, a NodeJS
shared library, or the legacy 3.14/3.15 branch of V8.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between V8 versions 3.3.0 dated 2020-10-24 and 3.3.1 dated 2020-10-26
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS | 3 +++ build/partial.rdb |binary configure | 17 +++++++++-------- inst/doc/npm.html | 4 ++-- inst/doc/v8_intro.html | 6 +++--- 7 files changed, 26 insertions(+), 22 deletions(-)
Title: Catalogue of Life Toolkit
Description: A programmatic interface to <http://sp2000.org.cn>, re-written based on an accompanying 'Species 2000' API. Access tables describing catalogue of the Chinese known species of animals, plants, fungi, micro-organisms, and more. This package also supports access to catalogue of life global <http://catalogueoflife.org>, China animal scientific database <http://zoology.especies.cn> and catalogue of life Taiwan <https://taibnet.sinica.edu.tw/home_eng.php>. The development of 'SP2000' package were supported by Biodiversity Survey and Assessment Project of the Ministry of Ecology and Environment, China <2019HJ2096001006>,Yunnan University's "Double First Class" Project <C176240405> and Yunnan University's Research Innovation Fund for Graduate Students <2019227>.
Author: Liuyong Ding [aut, cre] (<https://orcid.org/0000-0002-5490-182X>),
Minrui Huang [ctb],
Ke Yang [ctb],
Jun Wang [ctb] (<https://orcid.org/0000-0003-2481-1409>),
Juan Tao [ctb],
Chengzhi Ding [ctb] (<https://orcid.org/0000-0001-5215-7374>),
Daming He [ctb]
Maintainer: Liuyong Ding <ly_ding@126.com>
Diff between SP2000 versions 0.1.0 dated 2020-08-04 and 0.2.0 dated 2020-10-26
DESCRIPTION | 15 +++++------ MD5 | 57 ++++++++++++++++++++++-------------------- NAMESPACE | 4 ++ NEWS | 5 +++ R/api_key.R | 24 ++++++++++++++--- R/download_col_china.R | 12 +++++--- R/get_col_global.R | 14 ---------- R/get_col_taiwan.R | 1 R/get_province.R | 5 +-- R/get_redlist_china.R | 17 ++++++++---- R/get_top20.R | 2 - R/search_checklist.R | 2 - R/search_family_id.R | 2 - R/search_taxon_id.R | 31 ---------------------- R/zoology_dbase_name.R |only R/zoology_description.R |only R/zoology_description_type.R |only build/partial.rdb |binary man/SP2000-package.Rd | 4 +- man/api_key.Rd | 11 +++++--- man/download_col_china.Rd | 8 ++++- man/get_col_taiwan.Rd | 1 man/get_province.Rd | 4 -- man/get_redlist_china.Rd | 12 ++++---- man/get_top20.Rd | 2 - man/search_checklist.Rd | 2 - man/search_family_id.Rd | 2 - man/search_taxon_id.Rd | 2 - man/zoology_dbase_name.Rd |only man/zoology_description.Rd |only tests/testthat.R | 1 tests/testthat/test_api_key.R | 6 ---- 32 files changed, 122 insertions(+), 124 deletions(-)
Title: Projection Predictive Feature Selection
Description: Performs projection predictive feature selection for generalized linear
models and generalized linear and additive multilevel models
(see, Piironen, Paasiniemi and Vehtari, 2020, <https://projecteuclid.org/euclid.ejs/1589335310>,
Catalina, Bürkner and Vehtari, 2020, <arXiv:2010.06994>).
The package is compatible with the 'rstanarm' and 'brms' packages, but other
reference models can also be used. See the package vignette for more
information and examples.
Author: Juho Piironen [aut],
Markus Paasiniemi [aut],
Alejandro Catalina [cre, aut],
Aki Vehtari [aut],
Jonah Gabry [ctb],
Marco Colombo [ctb],
Paul-Christian Bürkner [ctb]
Maintainer: Alejandro Catalina <alecatfel@gmail.com>
Diff between projpred versions 1.1.6 dated 2020-04-01 and 2.0.0 dated 2020-10-26
projpred-1.1.6/projpred/R/kl_helpers.R |only projpred-1.1.6/projpred/man/init_refmodel.Rd |only projpred-1.1.6/projpred/man/suggest_size.Rd |only projpred-1.1.6/projpred/man/varsel-statistics.Rd |only projpred-2.0.0/projpred/DESCRIPTION | 45 projpred-2.0.0/projpred/MD5 | 111 + projpred-2.0.0/projpred/NAMESPACE | 28 projpred-2.0.0/projpred/NEWS.md | 4 projpred-2.0.0/projpred/R/cv_varsel.R | 1014 +++++++++------ projpred-2.0.0/projpred/R/divergence_minimizers.R |only projpred-2.0.0/projpred/R/extend_family.R |only projpred-2.0.0/projpred/R/families.R | 120 - projpred-2.0.0/projpred/R/formula.R |only projpred-2.0.0/projpred/R/gamm4.R |only projpred-2.0.0/projpred/R/glmfun.R | 504 ++++--- projpred-2.0.0/projpred/R/helper_formula.R |only projpred-2.0.0/projpred/R/methods.R | 1062 +++++++++------ projpred-2.0.0/projpred/R/misc.R | 630 +++++---- projpred-2.0.0/projpred/R/project.R | 279 ++-- projpred-2.0.0/projpred/R/projfun.R | 281 +--- projpred-2.0.0/projpred/R/projpred-package.R | 51 projpred-2.0.0/projpred/R/refmodel.R | 824 ++++++------ projpred-2.0.0/projpred/R/search.R | 266 ++- projpred-2.0.0/projpred/R/summary_funs.R | 348 ++--- projpred-2.0.0/projpred/R/varsel.R | 521 ++++--- projpred-2.0.0/projpred/build |only projpred-2.0.0/projpred/inst |only projpred-2.0.0/projpred/man/break_up_matrix_term.Rd |only projpred-2.0.0/projpred/man/cv-indices.Rd | 40 projpred-2.0.0/projpred/man/cv_varsel.Rd | 122 + projpred-2.0.0/projpred/man/df_binom.Rd | 6 projpred-2.0.0/projpred/man/df_gaussian.Rd | 6 projpred-2.0.0/projpred/man/do_call.Rd |only projpred-2.0.0/projpred/man/extend_family.Rd |only projpred-2.0.0/projpred/man/extra-families.Rd |only projpred-2.0.0/projpred/man/get-refmodel.Rd | 120 + projpred-2.0.0/projpred/man/helper_formula.Rd |only projpred-2.0.0/projpred/man/mesquite.Rd | 6 projpred-2.0.0/projpred/man/plot.vsel.Rd |only projpred-2.0.0/projpred/man/predict.refmodel.Rd | 32 projpred-2.0.0/projpred/man/print-vsel.Rd | 19 projpred-2.0.0/projpred/man/proj-pred.Rd | 92 - projpred-2.0.0/projpred/man/project.Rd | 102 - projpred-2.0.0/projpred/man/projpred.Rd | 53 projpred-2.0.0/projpred/man/reexports.Rd |only projpred-2.0.0/projpred/man/solution_terms.Rd |only projpred-2.0.0/projpred/man/suggest_size.vsel.Rd |only projpred-2.0.0/projpred/man/summary.vsel.Rd |only projpred-2.0.0/projpred/man/varsel.Rd | 155 +- projpred-2.0.0/projpred/src/glmfun.cpp | 8 projpred-2.0.0/projpred/tests/testthat/test_as_matrix.R | 137 +- projpred-2.0.0/projpred/tests/testthat/test_cvindices.R | 30 projpred-2.0.0/projpred/tests/testthat/test_datafit.R | 472 ++++-- projpred-2.0.0/projpred/tests/testthat/test_formula.R |only projpred-2.0.0/projpred/tests/testthat/test_glm_elnet.R | 260 ++- projpred-2.0.0/projpred/tests/testthat/test_glm_ridge.R | 252 ++- projpred-2.0.0/projpred/tests/testthat/test_misc.R | 252 ++- projpred-2.0.0/projpred/tests/testthat/test_proj_pred.R | 641 +++++---- projpred-2.0.0/projpred/tests/testthat/test_project.R | 470 +++--- projpred-2.0.0/projpred/tests/testthat/test_refmodel.R | 108 - projpred-2.0.0/projpred/tests/testthat/test_syntax.R | 54 projpred-2.0.0/projpred/tests/testthat/test_varsel.R | 1080 ++++++++-------- projpred-2.0.0/projpred/vignettes |only 63 files changed, 6072 insertions(+), 4533 deletions(-)
Title: Univariate Kernel Density Estimation
Description: Provides an efficient implementation of univariate local polynomial
kernel density estimators that can handle bounded and discrete data. See
Geenens (2014) <arXiv:1303.4121>,
Geenens and Wang (2018) <arXiv:1602.04862>,
Nagler (2018a) <arXiv:1704.07457>,
Nagler (2018b) <arXiv:1705.05431>.
Author: Thomas Nagler [aut, cre],
Thibault Vatter [aut]
Maintainer: Thomas Nagler <mail@tnagler.com>
Diff between kde1d versions 1.0.2 dated 2019-11-18 and 1.0.3 dated 2020-10-26
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 10 ++++++++-- R/kde1d-methods.R | 34 ++-------------------------------- R/tools.R | 5 ----- README.md | 5 +++-- man/dkde1d.Rd | 2 +- tests/testthat/Rplots.pdf |binary 8 files changed, 25 insertions(+), 53 deletions(-)
Title: Symbolic Differentiation
Description: R-based solution for symbolic differentiation. It admits
user-defined function as well as function substitution
in arguments of functions to be differentiated. Some symbolic
simplification is part of the work.
Author: Andrew Clausen [aut],
Serguei Sokol [aut, cre] (<https://orcid.org/0000-0002-5674-3327>),
Andreas Rappold [ctb]
Maintainer: Serguei Sokol <sokol@insa-toulouse.fr>
Diff between Deriv versions 4.1.0 dated 2020-10-02 and 4.1.1 dated 2020-10-26
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS | 8 ++++++++ R/Deriv.R | 2 +- R/Simplify.R | 17 +++++++++++------ inst/CITATION | 2 +- man/Deriv-package.Rd | 4 ++-- tests/testthat/test_Simplify.R | 3 ++- 8 files changed, 36 insertions(+), 22 deletions(-)
Title: A Grammar of Clinical Data Summary
Description: A tool created to simplify the data manipulation necessary to create clinical reports.
Author: Eli Miller [aut] (<https://orcid.org/0000-0002-2127-9456>),
Mike Stackhouse [aut, cre] (<https://orcid.org/0000-0001-6030-723X>),
Ashley Tarasiewicz [aut],
Nathan Kosiba [aut] (<https://orcid.org/0000-0001-5359-4234>),
Atorus Research LLC [cph]
Maintainer: Mike Stackhouse <mike.stackhouse@atorusresearch.com>
Diff between Tplyr versions 0.1.3 dated 2020-10-07 and 0.1.4 dated 2020-10-26
DESCRIPTION | 6 ++-- MD5 | 18 ++++++------ NEWS.md | 9 ++++++ R/count.R | 66 ++++++++++++++++++++++++++++++++++---------- R/count_bindings.R | 10 ++++-- R/denom.R | 1 README.md | 8 ++++- inst/doc/Tplyr.html | 12 ++++---- man/add_total_row.Rd | 10 ++++-- tests/testthat/test-count.R | 28 +++++++++++++++++- 10 files changed, 124 insertions(+), 44 deletions(-)
Title: Format Output of Various Routines in a Suitable Way for Reports
and Publication
Description: A bunch of convenience functions that transform the results of some basic statistical analyses
into table format nearly ready for publication. This includes descriptive tables, tables of
logistic regression and Cox regression results as well as forest plots.
Author: Thomas A. Gerds [aut, cre],
Christian Torp-Pedersen [ctb],
Klaus K Holst [ctb],
Brice Ozenne [aut]
Maintainer: Thomas A. Gerds <tag@biostat.ku.dk>
Diff between Publish versions 2019.12.04 dated 2019-12-04 and 2020.10.27 dated 2020-10-26
DESCRIPTION | 8 +-- MD5 | 92 ++++++++++++++++++++-------------------- R/acut.R | 50 +++++++++++++++++++++ R/formatCI.R | 9 --- R/parseInteractionTerms.R | 46 +++++++++++++------- R/plot.subgroupAnalysis.R | 3 - R/plotConfidence.R | 4 - R/plotLabels.R | 7 +-- R/publish.CauseSpecificCox.R | 13 +++++ R/publish.matrix.R | 37 ++++++++++------ R/specialFrame.R | 6 +- R/splinePlot.lrm.R | 8 ++- R/subgroupAnalysis.R | 16 ++++-- R/summary.univariateTable.R | 2 R/univariateTable.R | 19 +++----- man/CiTable.Rd | 6 +- man/Diabetes.Rd | 6 +- man/SpaceT.Rd | 6 +- man/acut.Rd | 42 ++++++++++++++++-- man/ci.mean.default.Rd | 10 +++- man/fixRegressionTable.Rd | 12 ++++- man/formatCI.Rd | 28 ++++++------ man/parseInteractionTerms.Rd | 35 +++++++++------ man/plot.subgroupAnalysis.Rd | 3 - man/plotConfidence.Rd | 50 +++++++++++++++++---- man/publish.CauseSpecificCox.Rd | 24 +++++++++- man/publish.MIresult.Rd | 16 +++++- man/publish.Score.Rd | 3 - man/publish.coxph.Rd | 13 ++++- man/publish.glm.Rd | 16 +++++- man/publish.matrix.Rd | 56 +++++++++++++++++------- man/publish.riskRegression.Rd | 3 - man/publish.summary.aov.Rd | 10 +++- man/regressionTable.Rd | 13 ++++- man/spaghettiogram.Rd | 20 +++++++- man/specialFrame.Rd | 20 ++++++-- man/splinePlot.lrm.Rd | 23 ++++++++-- man/stripes.Rd | 15 +++++- man/subgroupAnalysis.Rd | 13 +++-- man/summary.ci.Rd | 3 - man/summary.regressionTable.Rd | 3 - man/summary.subgroupAnalysis.Rd | 10 +++- man/summary.univariateTable.Rd | 15 ++++-- man/table2x2.Rd | 7 ++- man/trace.Rd | 6 +- man/traceR.Rd | 6 +- man/univariateTable.Rd | 36 ++++++++++----- 47 files changed, 594 insertions(+), 255 deletions(-)
Title: Models for Non Linear Causality Detection in Time Series
Description: Models for non-linear time series analysis and causality detection. The main functionalities of this package consist of an implementation of the classical causality test (C.W.J.Granger 1980) <doi:10.1016/0165-1889(80)90069-X>, and a non-linear version of it based on feed-forward neural networks. This package contains also an implementation of the Transfer Entropy <doi:10.1103/PhysRevLett.85.461>, and the continuous Transfer Entropy using an approximation based on the k-nearest neighbors <doi:10.1103/PhysRevE.69.066138>. There are also some other useful tools, like the VARNN (Vector Auto-Regressive Neural Network) prediction model, the Augmented test of stationarity, and the discrete and continuous entropy and mutual information.
Author: Youssef Hmamouche [aut, cre]
Maintainer: Youssef Hmamouche <hmamoucheyussef@gmail.com>
Diff between NlinTS versions 1.4.3 dated 2020-09-03 and 1.4.4 dated 2020-10-26
DESCRIPTION | 8 +++--- MD5 | 10 ++++---- build/partial.rdb |binary src/network.cpp | 54 +++++++--------------------------------------- src/nlinCausalityTest.cpp | 11 +++------ src/utils.cpp | 2 - 6 files changed, 23 insertions(+), 62 deletions(-)
Title: Additional Layout Algorithms for Network Visualizations
Description: Several new layout algorithms to visualize networks are provided which are not part of 'igraph'.
Most are based on the concept of stress majorization by Gansner et al. (2004) <doi:10.1007/978-3-540-31843-9_25>.
Some more specific algorithms allow to emphasize hidden group structures in networks or focus on specific nodes.
Author: David Schoch [aut, cre]
Maintainer: David Schoch <david.schoch@manchester.ac.uk>
Diff between graphlayouts versions 0.7.0 dated 2020-04-25 and 0.7.1 dated 2020-10-26
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ R/layout_stress.R | 53 +++++++++++++++++++++++++++++++++++++++++++++++++++-- 4 files changed, 61 insertions(+), 8 deletions(-)
Title: Systematic Scenario Selection for Stress Testing
Description: Quasi-Monte-Carlo algorithm for systematic generation of shock scenarios from an arbitrary multivariate elliptical distribution. The algorithm selects a systematic mesh of arbitrary fineness that approximately evenly covers an isoprobability ellipsoid in d dimensions (Flood, Mark D. & Korenko, George G. (2013) <doi:10.1080/14697688.2014.926018>).
This package is the 'R' analogy to the 'Matlab' code published by Flood & Korenko in above-mentioned paper.
Author: Merlin Kopfmann
Maintainer: Merlin Kopfmann <mghncd+cran@posteo.jp>
Diff between SyScSelection versions 1.0.1 dated 2020-06-30 and 1.0.2 dated 2020-10-26
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- build/vignette.rds |binary 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Genome-Wide Association Study with SNP-Set Methods
Description: By using 'RAINBOWR' (Reliable Association INference By Optimizing Weights with R), users can test multiple SNPs (Single Nucleotide Polymorphisms) simultaneously by kernel-based (SNP-set) methods. This package can also be applied to haplotype-based GWAS (Genome-Wide Association Study). Users can test not only additive effects but also dominance and epistatic effects. In detail, please check our paper on PLOS Computational Biology: Kosuke Hamazaki and Hiroyoshi Iwata (2020) <doi:10.1371/journal.pcbi.1007663>.
Author: Kosuke Hamazaki [aut, cre],
Hiroyoshi Iwata [aut, ctb]
Maintainer: Kosuke Hamazaki <hamazaki@ut-biomet.org>
Diff between RAINBOWR versions 0.1.19 dated 2020-07-23 and 0.1.21 dated 2020-10-26
DESCRIPTION | 13 MD5 | 21 NAMESPACE | 27 R/other_useful_functions.R | 2860 ++++++++++++++++++++++++++++++++++++++++----- README.md | 35 build/vignette.rds |binary inst/doc/RAINBOWR.Rmd | 36 inst/doc/RAINBOWR.html | 253 ++- man/estNetwork.Rd |only man/estPhylo.Rd | 81 + man/plotHaploNetwork.Rd |only man/plotPhyloTree.Rd |only vignettes/RAINBOWR.Rmd | 36 13 files changed, 2965 insertions(+), 397 deletions(-)
Title: JAR Dependency for MCMC Using 'BEAST'
Description: Provides JAR to perform Markov chain Monte Carlo (MCMC) inference using
the popular Bayesian Evolutionary Analysis by Sampling Trees 'BEAST' software library
of Suchard et al (2018) <doi:10.1093/ve/vey016>. 'BEAST' supports auto-tuning
Metropolis-Hastings, slice, Hamiltonian Monte Carlo and Sequential Monte Carlo
sampling for a large variety of composable standard and phylogenetic statistical
models using high performance computing. By placing the 'BEAST' JAR in this package,
we offer an efficient distribution system for 'BEAST' use by other R packages using
CRAN.
Author: Marc A. Suchard [aut, cre, cph],
Andrew Rambaut [cph],
Alexei J. Drummond [cph]
Maintainer: Marc A. Suchard <msuchard@ucla.edu>
Diff between BeastJar versions 1.10.5 dated 2020-10-13 and 1.10.6 dated 2020-10-26
DESCRIPTION | 7 - MD5 | 14 +- NAMESPACE | 1 NEWS.md | 5 R/BeastJar.R | 195 ++++++++++++++++++------------------- R/Utilities.R |only man/BeastJar.Rd | 195 ++++++++++++++++++------------------- man/supportsJava8.Rd |only tests/testthat/test-installation.R | 20 ++- 9 files changed, 227 insertions(+), 210 deletions(-)
Title: Support for Parallel Computation, Logging, and Function
Automation
Description: Support for parallel computation with progress bar, and option to stop or proceed on errors. Also provides logging to console and disk,
and the logging persists in the parallel threads. Additional functions support function call automation with delayed execution (e.g. for executing functions in
parallel).
Author: Martijn Schuemie [aut, cre],
Marc Suchard [aut],
Observational Health Data Science and Informatics [cph]
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between ParallelLogger versions 2.0.0 dated 2020-06-07 and 2.0.1 dated 2020-10-26
DESCRIPTION | 12 ++--- MD5 | 85 ++++++++++++++++++------------------- NEWS.md | 14 ++++++ R/Appenders.R | 84 ++++++++++++++++++++++-------------- R/Args.R | 57 +++++++++++++----------- R/Cluster.R | 45 ++++++++++--------- R/Layouts.R | 22 +++++---- R/Loggers.R | 69 ++++++++++++++++-------------- R/Logging.R | 36 ++++++++------- R/ParallelLogger.R | 5 -- R/ShinyApps.R | 8 +-- README.md | 7 +-- build/vignette.rds |binary inst/doc/Logging.R | 17 ++----- inst/doc/Logging.Rmd | 23 +++------- inst/doc/Logging.pdf |binary inst/doc/Parallel.R | 7 --- inst/doc/Parallel.Rmd | 13 +---- inst/doc/Parallel.pdf |binary man/addDefaultConsoleLogger.Rd | 47 ++++++++++---------- man/addDefaultEmailLogger.Rd | 14 +++--- man/addDefaultErrorReportLogger.Rd | 14 +++--- man/addDefaultFileLogger.Rd | 6 +- man/convertJsonToSettings.Rd | 3 - man/convertSettingsToJson.Rd | 42 +++++++++--------- man/createConsoleAppender.Rd | 56 ++++++++++++------------ man/createEmailAppender.Rd | 17 +++---- man/launchLogViewer.Rd | 66 ++++++++++++++-------------- man/layoutEmail.Rd | 4 - man/layoutErrorReport.Rd | 6 +- man/layoutTimestamp.Rd | 54 +++++++++++------------ man/logFatal.Rd | 40 ++++++++--------- man/logInfo.Rd | 58 ++++++++++++------------- man/logTrace.Rd | 58 ++++++++++++------------- man/logWarn.Rd | 40 ++++++++--------- man/makeCluster.Rd | 3 - man/matchInList.Rd | 82 +++++++++++++++++++---------------- man/registerLogger.Rd | 58 ++++++++++++------------- man/saveSettingsToJson.Rd | 40 ++++++++--------- man/selectFromList.Rd | 76 ++++++++++++++++----------------- man/unregisterLogger.Rd | 4 - tests/testthat/test-args.R |only vignettes/Logging.Rmd | 23 +++------- vignettes/Parallel.Rmd | 13 +---- 44 files changed, 689 insertions(+), 639 deletions(-)
More information about ParallelLogger at CRAN
Permanent link
Title: Linguistic Phonetic Fieldwork Tools
Description: There are a lot of different typical tasks that have to be solved during phonetic research and experiments. This includes creating a presentation that will contain all stimuli, renaming and concatenating multiple sound files recorded during a session, automatic annotation in 'Praat' TextGrids (this is one of the sound annotation standards provided by 'Praat' software, see Boersma & Weenink 2020 <https://www.fon.hum.uva.nl/praat/>), creating an html table with annotations and spectrograms, and converting multiple formats ('Praat' TextGrid, 'ELAN', 'EXMARaLDA', 'Audacity', subtitles '.srt', and 'FLEx' flextext). All of these tasks can be solved by a mixture of different tools (any programming language has programs for automatic renaming, and Praat contains scripts for concatenating and renaming files, etc.). 'phonfieldwork' provides a functionality that will make it easier to solve those tasks independently of any additional tools. You can also compare the functionality with other packages: 'rPraat' <https://CRAN.R-project.org/package=rPraat>, 'textgRid' <https://CRAN.R-project.org/package=textgRid>.
Author: George Moroz [aut, cre] (<https://orcid.org/0000-0003-1990-6083>),
Jonathan Keane [rev] (<https://orcid.org/0000-0001-7087-9776>),
Niko Partanen [rev] (<https://orcid.org/0000-0001-8584-3880>)
Maintainer: George Moroz <agricolamz@gmail.com>
Diff between phonfieldwork versions 0.0.8 dated 2020-10-25 and 0.0.9 dated 2020-10-26
DESCRIPTION | 7 ++- MD5 | 10 ++--- inst/doc/data_manipulation_with_tidyverse.Rmd | 42 +++++++++++----------- inst/doc/data_manipulation_with_tidyverse.html | 42 +++++++++++----------- inst/doc/ethical_research_with_phonfieldwork.html | 4 +- vignettes/data_manipulation_with_tidyverse.Rmd | 42 +++++++++++----------- 6 files changed, 74 insertions(+), 73 deletions(-)
Title: Poisson-Tweedie Generalized Linear Mixed Model
Description: Fits the Poisson-Tweedie generalized linear mixed
model described in Signorelli et al. (2020,
<doi:10.1177/1471082X20936017>). Likelihood approximation based on
adaptive Gauss Hermite quadrature rule.
Author: Mirko Signorelli [aut, cre, cph]
(<https://orcid.org/0000-0002-8102-3356>),
Pietro Spitali [aut],
Roula Tsonaka [aut]
Maintainer: Mirko Signorelli <msignorelli.rpackages@gmail.com>
Diff between ptmixed versions 1.0.0 dated 2020-08-27 and 1.0.1 dated 2020-10-26
DESCRIPTION | 26 ++++++++++++++++++++------ MD5 | 8 ++++---- R/makespaghetti.R | 2 +- R/simulate_ptglmm.R | 6 ++++++ inst/NEWS.md | 8 ++++++++ 5 files changed, 39 insertions(+), 11 deletions(-)
Title: BMRB Data Access and Visualization
Description: The Biological Magnetic Resonance Data Bank (BMRB,<http://
www.bmrb.io/>) collects, annotates, archives, and disseminates (worldwide
in the public domain) the important spectral and quantitative data derived
from NMR(Nuclear Magnetic Resonance) spectroscopic investigations of biological
macromolecules and metabolites. This package provides an interface to BMRB
database for easy data access and includes a minimal set of data visualization
functions. Users are encouraged to make their own data visualizations using BMRB
data.
Author: Kumaran Baskaran
Maintainer: Kumaran Baskaran<baskaran.kumaran@gmail.com>
Diff between RBMRB versions 2.1.2 dated 2018-01-30 and 2.1.4 dated 2020-10-26
DESCRIPTION | 14 ++++----- MD5 | 24 ++++++++-------- R/RBMRB.R | 55 +++++++++++++++++++++++++------------ man/HSQC_13C.Rd | 4 +- man/HSQC_15N.Rd | 6 ++-- man/chemical_shift_hist.Rd | 3 -- man/chemical_shift_hist_res.Rd | 8 ++++- man/chemical_shift_hists.Rd | 9 ++++-- man/convert_cs_to_c13hsqc.Rd | 4 +- man/convert_cs_to_n15hsqc.Rd | 4 +- man/fetch_entry_chemical_shifts.Rd | 6 ++-- man/fetch_entry_cs.Rd | 4 +- man/filter_outlier.Rd | 2 - 13 files changed, 86 insertions(+), 57 deletions(-)
Title: Handling of Data from the Clinical Data Management System
'secuTrial'
Description: Seamless and standardized interaction with data
exported from the clinical data management system (CDMS)
'secuTrial'<https://www.secutrial.com>.
The primary data export the package works with is a standard non-rectangular export.
Author: Patrick R. Wright [cre, aut, cph],
Alan G. Haynes [aut, cph],
Milica Markovic [aut, cph],
Gilles Dutilh [ctb],
Armando Lenz [ctb],
Pascal Benkert [com]
Maintainer: Patrick R. Wright <patrick.wright@usb.ch>
Diff between secuTrialR versions 1.0.3 dated 2020-04-24 and 1.0.6 dated 2020-10-26
DESCRIPTION | 6 MD5 | 38 - NEWS.md | 9 R/dates_secuTrial.R | 3 R/factorize.R | 46 - R/internals.R | 27 R/read_validation_overview.R | 13 R/subset.R | 6 README.md | 962 +++++++++++++---------------- inst/doc/secuTrialR-package-vignette.R | 56 + inst/doc/secuTrialR-package-vignette.Rmd | 126 +++ inst/doc/secuTrialR-package-vignette.pdf |binary man/read_validation_overview.Rd | 10 tests/testthat/test-id_conversion.R | 6 tests/testthat/test-plot_recruitment.R | 3 tests/testthat/test-read_export_options.R | 2 tests/testthat/test-subset.R | 30 tests/testthat/test-visit_structure.R | 10 vignettes/secuTrialR-package-vignette.Rmd | 126 +++ vignettes/secuTrialR-package-vignette.html | 184 ++++- 20 files changed, 1074 insertions(+), 589 deletions(-)
Title: Causal Effect Identification from Multiple Incomplete Data
Sources
Description: Identification of causal effects from arbitrary observational and experimental probability
distributions via do-calculus and standard probability manipulations using a search-based algorithm.
Allows for the presence of mechanisms related to selection bias (Bareinboim, E. and Tian, J. (2015)
<http://ftp.cs.ucla.edu/pub/stat_ser/r445.pdf>), transportability (Bareinboim, E. and Pearl, J. (2014)
<http://ftp.cs.ucla.edu/pub/stat_ser/r443.pdf>), missing data (Mohan, K. and Pearl, J. and Tian., J.
(2013) <http://ftp.cs.ucla.edu/pub/stat_ser/r410.pdf>) and arbitrary combinations of these. Also supports
identification in the presence of context-specific independence (CSI) relations through labeled directed
acyclic graphs (LDAG). For details on CSIs see Corander et al. (2019) <doi:10.1016/j.apal.2019.04.004>.
For further information on the search-based approach see Tikka et al. (2019) <arXiv:1902.01073>.
Author: Santtu Tikka [aut, cre] (<https://orcid.org/0000-0003-4039-4342>),
Antti Hyttinen [ctb] (<https://orcid.org/0000-0002-6649-3229>),
Juha Karvanen [ctb] (<https://orcid.org/0000-0001-5530-769X>)
Maintainer: Santtu Tikka <santtuth@gmail.com>
Diff between dosearch versions 1.0.4 dated 2019-10-22 and 1.0.6 dated 2020-10-26
dosearch-1.0.4/dosearch/R/get_derivation_dag.R |only dosearch-1.0.4/dosearch/R/get_derivation_ldag.R |only dosearch-1.0.4/dosearch/R/to_dec.R |only dosearch-1.0.4/dosearch/R/to_vec.R |only dosearch-1.0.6/dosearch/DESCRIPTION | 10 dosearch-1.0.6/dosearch/MD5 | 41 +-- dosearch-1.0.6/dosearch/NAMESPACE | 10 dosearch-1.0.6/dosearch/NEWS | 11 dosearch-1.0.6/dosearch/R/RcppExports.R | 22 - dosearch-1.0.6/dosearch/R/dosearch.R | 137 +++++++++- dosearch-1.0.6/dosearch/R/internal.R |only dosearch-1.0.6/dosearch/inst/CITATION | 24 - dosearch-1.0.6/dosearch/man/bivariate_missingness.Rd | 2 dosearch-1.0.6/dosearch/man/dosearch-package.Rd | 256 +++++++++---------- dosearch-1.0.6/dosearch/man/dosearch.Rd | 176 +++++++------ dosearch-1.0.6/dosearch/man/get_benchmark.Rd |only dosearch-1.0.6/dosearch/man/get_derivation.Rd |only dosearch-1.0.6/dosearch/man/get_formula.Rd |only dosearch-1.0.6/dosearch/man/is_identifiable.Rd |only dosearch-1.0.6/dosearch/src/RcppExports.cpp | 8 dosearch-1.0.6/dosearch/src/csisearch.cpp | 18 - dosearch-1.0.6/dosearch/src/dosearch.cpp | 16 - dosearch-1.0.6/dosearch/src/initialize_csisearch.cpp | 2 dosearch-1.0.6/dosearch/src/initialize_dosearch.cpp | 2 dosearch-1.0.6/dosearch/src/search.cpp | 25 + dosearch-1.0.6/dosearch/src/search.h | 2 26 files changed, 463 insertions(+), 299 deletions(-)
Title: Equating of Multiple Forms
Description: Equating of multiple forms using Item Response Theory (IRT) methods (Battauz M. (2017) <doi:10.1007/s11336-016-9517-x> and Haberman S. J. (2009) <doi:10.1002/j.2333-8504.2009.tb02197.x>).
Author: Michela Battauz
Maintainer: Michela Battauz <michela.battauz@uniud.it>
Diff between equateMultiple versions 0.0.0 dated 2017-11-02 and 0.0.1 dated 2020-10-26
equateMultiple-0.0.0/equateMultiple/man/equateMultiple-internal.Rd |only equateMultiple-0.0.0/equateMultiple/src/Makevars |only equateMultiple-0.0.0/equateMultiple/src/Makevars.win |only equateMultiple-0.0.1/equateMultiple/DESCRIPTION | 6 equateMultiple-0.0.1/equateMultiple/MD5 | 13 equateMultiple-0.0.1/equateMultiple/build/vignette.rds |binary equateMultiple-0.0.1/equateMultiple/inst/doc/equateMultiple_tutorial.R | 28 equateMultiple-0.0.1/equateMultiple/inst/doc/equateMultiple_tutorial.html | 1896 ++++++++-- equateMultiple-0.0.1/equateMultiple/src/EqMult.cpp | 39 9 files changed, 1697 insertions(+), 285 deletions(-)
More information about equateMultiple at CRAN
Permanent link
Title: Functions and Data for the Book 'Applied Hierarchical Modeling
in Ecology' Vols 1 and 2
Description: Provides functions and data sets to accompany the two volume publication 'Applied Hierarchical Modeling in Ecology: Analysis of distribution, abundance and species richness in R and BUGS' by Marc Kéry and Andy Royle: volume 1 (2016, ISBN: 978-0-12-801378-6) and volume 2 (2021, ISBN: 978-0-12-809585-0), <https://www.mbr-pwrc.usgs.gov/pubanalysis/keryroylebook>.
Author: Marc Kéry [aut],
Andy Royle [aut],
Mike Meredith [aut, cre],
Urs Breitenmoser [dtc] (EurasianLynx),
Richard Chandler [ctb],
Bob Dorazio [ctb],
Evan Grant [dtc] (duskySalamanders),
John-Andren Henden [dtc] (Finnmark),
Roland Kays [dtc] (MesoCarnivores),
David King [dtc] (cswa),
Xavier Lambin [dtc] (waterVoles),
Jeremy Mizel [ctb, dtc] (treeSparrow),
Anja Molinari-Jobin [dtc] (EurasianLynx),
René-Jean Monneret [dtc] (FrenchPeregrines),
Arielle Parsons [dtc] (MesoCarnivores),
René Ruffinoni [dtc] (FrenchPeregrines),
Michael Schaub [ctb],
Rahel Solmann [ctb],
Nicolas Strebel [dtc],
Chris Sutherland [ctb, dtc] (waterVoles),
Mathias Tobler [ctb],
Fridolin Zimmermann [dtc] (EurasianLynx),
Aargau Biodiversity Monitoring Program (LANAG) [dtc],
British Ornithological Trust [dtc] (willowWarbler, UKmarbledWhite,
<https://www.bto.org/>),
Butterfly Conservation [dtc, cph] (UKmarbledWhite,
<https://butterfly-conservation.org>),
Centre for Ecology & Hydrology [dtc, cph] (UKmarbledWhite,
<https://www.ceh.ac.uk>),
Dutch Centre for Field Ornithology (Sovon) [dtc] (wagtail,
<https://www.sovon.nl>),
eMammal [dtc] (MesoCarnivores, <https://emammal.si.edu/>),
Groupe Pèlerin Jura [dtc] (FrenchPeregrines),
Hubbard Brook Ecosystem Study [dtc] (HubbardBrook,
<http://data.hubbardbrook.org/data/dataset.php?id=178>),
Joint Nature Conservation Committee (JNCC) [dtc, cph] (UKmarbledWhite,
<https://jncc.gov.uk/>),
North Carolina Museum of Natural Sciences [dtc] (mesoCarnivores),
North Carolina State University [dtc] (mesoCarnivores),
Progetto Lince Italia [dtc] (EurasianLynx,
<https://www.progettolinceitalia.it>),
Swiss Federal Statistical Office [dtc, cph] (BerneseOberland,
<http://www.bfs.admin.ch>),
Swiss Foundation KORA Carnivore Ecology and Wildlife Management (SCALP
project) [dtc] (EurasianLynx, <https://www.kora.ch>),
Swiss Ornithological Institute [dtc] (<https://www.vogelwarte.ch>),
UK Butterfly Monitoring Scheme (UKBMS) [dtc, cph] (UKmarbledWhite,
<https://www.ceh.ac.uk/our-science/projects/uk-butterfly-monitoring-scheme>)
Maintainer: Mike Meredith <mike@mmeredith.net>
Diff between AHMbook versions 0.2.0 dated 2020-06-09 and 0.2.2 dated 2020-10-26
DESCRIPTION | 28 - MD5 | 211 ++++--- NAMESPACE | 2 NEWS | 72 +- R/data-fn_AHM1_4.3_Simulate_binomial_mixture_model.R | 53 + R/playRN_AHM1_6-13-1_Simulate_Royle-Nichols_model.R | 12 R/sim3Occ_AHM1_10-10_Simulate_static_3level_occupancy.R | 28 - R/simCJS_AHM2_3-2-2.R | 74 +- R/simComm_AHM1_11-2_Simulate_community_data.R | 194 +++---- R/simDCM.R | 92 ++- R/simDM_AHM2_2-5-5_DailMadsen_model.R | 35 - R/simDSM.R | 33 - R/simDataDK_AHM2_10.R | 46 - R/simDemoDynocc_AHM2_4.R | 42 - R/simDynoccSpatial_AHM2_9.R | 148 +++-- R/simDynocc_AHM2_3_Simulate_dynamic_occupancy.R | 188 +++---- R/simExpCorrRF.R | 24 R/simFn_AHM1_1-1_Simulate_Poisson_process.R | 109 ++-- R/simFrogDisease.R |only R/simHDS_AHM1_8-5-1_Simulate_hierarch_distance_sampling.R | 46 + R/simHDSg_AHM1_9-2-1_Simulate_hierarch_distance_sampling_groups.R | 46 + R/simHDStr.R | 50 + R/simLdata_AHM1_8-2-3_Simulate_line_transect_data.R | 14 R/simNmixSpatial_AHM2_9.R | 78 +- R/simNmix_AHM1_6-5_Simulate_binom-multinom_mixtures.R | 202 +++---- R/simNpC_AHM2_1-2-2.R | 32 - R/simOccSpatial_AHM2_9.R | 62 +- R/simOcc_AHM1_10-5_Simulate_static_occupancy.R | 152 +++-- R/simOccttd_AHM1_10-12-1_Simulate_timeToDetection_occupancy.R | 13 R/simPH_AHM2_1-8-1.R | 65 +- R/simPOP_AHM2_1-7-1.R | 34 - R/simPPe_AHM2_10.R | 146 ++--- R/simPdata_AHM1_8-2-5-1_Simulate_point_transect_data.R | 20 R/simSpatialDS_AHM1_9-8-3_Simulate_spatial_DS.R | 24 R/simSpatialDSline_AHM2_11-5.R | 67 +- R/simSpatialHDS.R | 24 R/tryPlotError.R |only R/wigglyOcc_AHM1_10-14_Simulate_occupancy_wiggly_covars.R | 22 inst/WORDLIST | 267 ++++------ man/AHMbook-package.Rd | 17 man/ch2marray.Rd | 2 man/color_ramps.Rd | 2 man/data_BerneseOberland.Rd | 16 man/data_EurasianLynx.Rd | 4 man/data_Finnmark.Rd | 2 man/data_FrenchPeregrines.Rd | 8 man/data_HubbardBrook.Rd | 4 man/data_MHB2014.Rd | 4 man/data_MesoCarnivores.Rd | 6 man/data_SwissAtlasHa.Rd | 4 man/data_SwissEagleOwls.Rd | 4 man/data_SwissMarbledWhite.Rd | 17 man/data_SwissSquirrels.Rd | 4 man/data_SwissTits.Rd | 8 man/data_UKmarbledWhite.Rd | 4 man/data_crestedTit.Rd | 4 man/data_crossbillAHM.Rd | 8 man/data_cswa.Rd | 4 man/data_dragonflies.Rd | 2 man/data_duskySalamanders.Rd | 2 man/data_greenWoodpecker.Rd | 4 man/data_spottedWoodpecker.Rd | 2 man/data_treeSparrow.Rd | 6 man/data_waterVoles.Rd | 2 man/data_wigglyLine.Rd | 4 man/data_willowWarbler.Rd | 12 man/fitstats.Rd | 2 man/getLVcorrMat.Rd | 4 man/graphSSM.Rd | 4 man/image_scale.Rd | 6 man/modSelFP.Rd | 2 man/piFuns.Rd | 5 man/playRN.Rd | 2 man/sim3Occ.Rd | 2 man/simCJS.Rd | 2 man/simDCM.Rd | 6 man/simDM_simDM0.Rd | 6 man/simDSM.Rd | 11 man/simData.fn.Rd | 2 man/simDataDK.Rd | 2 man/simDemoDynocc.Rd | 8 man/simDynocc.Rd | 11 man/simDynoccSpatial.Rd | 15 man/simExpCorrRF.Rd | 2 man/simFn.Rd | 4 man/simFrogDisease.Rd |only man/simHDS.Rd | 2 man/simHDStr.Rd | 4 man/simIssj.sim.Rd | 2 man/simLdata.Rd | 2 man/simMultMix.Rd | 4 man/simNmix.Rd | 10 man/simNmixSpatial.Rd | 8 man/simNpC.Rd | 2 man/simOcc.Rd | 4 man/simOccSpatial.Rd | 10 man/simOccttd.Rd | 8 man/simPH.Rd | 4 man/simPOP.Rd | 6 man/simPPe.Rd | 7 man/simSpatialDS.Rd | 2 man/simSpatialDSline.Rd | 8 man/simSpatialDSte.Rd | 6 man/simWigglyOcc.Rd | 2 man/simpleNmix.Rd | 2 man/standardize.Rd | 2 man/valid_data.Rd | 12 man/zinit.Rd | 2 108 files changed, 1702 insertions(+), 1414 deletions(-)
Title: Meta-Analysis Methods Correcting for Publication Bias
Description: Provides meta-analysis methods that correct for
publication bias and outcome reporting bias. Four methods and a visual tool
are currently included in the package. The p-uniform method as described in
van Assen, van Aert, and Wicherts (2015) <doi:10.1037/met0000025> can be used
for estimating the average effect size, testing the null hypothesis of no
effect, and testing for publication bias using only the statistically
significant effect sizes of primary studies. The second method in the package
is the p-uniform* method as described in van Aert and van Assen (2019)
<doi:10.31222/osf.io/zqjr9>. This method is an extension of the p-uniform
method that allows for estimation of the average effect size and the
between-study variance in a meta-analysis, and uses both the statistically
significant and nonsignificant effect sizes. The third method in the package
is the hybrid method as described in van Aert and van Assen (2017)
<doi:10.3758/s13428-017-0967-6>. The hybrid method is a meta-analysis method
for combining an original study and replication and while taking into account
statistical significance of the original study. The p-uniform and hybrid method
are based on the statistical theory that the distribution of p-values is
uniform conditional on the population effect size. The fourth method in the
package is the Snapshot Bayesian Hybrid Meta-Analysis Method as described in
van Aert and van Assen (2018) <doi:10.1371/journal.pone.0175302>. This method
computes posterior probabilities for four true effect sizes (no, small, medium,
and large) based on an original study and replication while taking into account
publication bias in the original study. The method can also be used for computing
the required sample size of the replication akin to power analysis in null
hypothesis significance testing. The meta-plot is a visual tool for meta-analysis
that provides information on the primary studies in the meta-analysis, the
results of the meta-analysis, and characteristics of the research on the effect
under study (van Assen and others, 2020). Helper functions to apply the
Correcting for Outcome Reporting Bias (CORB) method to correct for outcome
reporting bias in a meta-analysis (van Aert & Wicherts, 2020).
Author: Robbie C.M. van Aert
Maintainer: Robbie C.M. van Aert <R.C.M.vanAert@tilburguniversity.edu>
Diff between puniform versions 0.2.2 dated 2020-06-20 and 0.2.3 dated 2020-10-26
DESCRIPTION | 10 ++++---- MD5 | 20 ++++++++--------- NEWS.md | 9 ++++++- R/draw_plot_g.R | 18 ++++++++++----- R/draw_plot_or.R | 18 ++++++++++----- R/draw_plot_r.R | 22 ++++++++++++------- R/meta_plot.R | 60 ++++++++++++++++++++++++++++++++++++++++++++++------ R/testeffect_nsig.R | 19 +++------------- R/testhetero.R | 28 ++++-------------------- R/zzz.R | 2 - README.md | 11 ++++----- 11 files changed, 130 insertions(+), 87 deletions(-)
Title: Comfortable Search for R Packages on CRAN, Either Directly from
the R Console or with an R Studio Add-in
Description: Search for R packages on CRAN directly from the R console, based on the packages' titles, short and long descriptions, or other fields. Combine multiple keywords with logical operators ('and', 'or'), view detailed information on any package and keep track of the latest package contributions to CRAN. If you don't want to search from the R console, use the comfortable R Studio add-in.
Author: Joachim Zuckarelli [aut, cre] (<https://orcid.org/0000-0002-9280-3016>)
Maintainer: Joachim Zuckarelli <joachim@zuckarelli.de>
Diff between packagefinder versions 0.3.1 dated 2020-09-26 and 0.3.2 dated 2020-10-26
DESCRIPTION | 6 - MD5 | 14 +-- NEWS.md | 11 ++ R/addin.r | 197 +++++++++++++++++++++++++++-------------------------- R/addintools.r | 26 +++--- R/htmltools.r | 30 ++++---- R/packagefinder.r | 69 +++++++++++++----- man/findPackage.Rd | 7 + 8 files changed, 207 insertions(+), 153 deletions(-)
Title: 'CRU' 'CL' v. 2.0 Climatology Client
Description: Provides functions that automate downloading and importing
University of East Anglia Climate Research Unit ('CRU') 'CL' v. 2.0
climatology data, facilitates the calculation of minimum temperature and
maximum temperature and formats the data into a tidy data frame as a
'tibble' or a list of 'raster' 'stack' objects for use. 'CRU' 'CL' v. 2.0
data are a gridded climatology of 1961-1990 monthly means released in 2002
and cover all land areas (excluding Antarctica) at 10 arcminutes
(0.1666667 degree) resolution. For more information see the description of
the data provided by the University of East Anglia Climate Research Unit,
<https://crudata.uea.ac.uk/cru/data/hrg/tmc/readme.txt>.
Author: Adam H. Sparks [aut, cre] (<https://orcid.org/0000-0002-0061-8359>)
Maintainer: Adam H. Sparks <adamhsparks@gmail.com>
Diff between getCRUCLdata versions 0.3.1 dated 2019-08-29 and 0.3.2 dated 2020-10-26
getCRUCLdata-0.3.1/getCRUCLdata/R/getCRUCLdata.R |only getCRUCLdata-0.3.1/getCRUCLdata/inst/doc/getCRUCLdata.R |only getCRUCLdata-0.3.1/getCRUCLdata/man/getCRUCLdata.Rd |only getCRUCLdata-0.3.1/getCRUCLdata/vignettes/README-unnamed-chunk-10-1.png |only getCRUCLdata-0.3.1/getCRUCLdata/vignettes/README-unnamed-chunk-11-1.png |only getCRUCLdata-0.3.1/getCRUCLdata/vignettes/README-unnamed-chunk-6-1.png |only getCRUCLdata-0.3.1/getCRUCLdata/vignettes/README-unnamed-chunk-7-1.png |only getCRUCLdata-0.3.2/getCRUCLdata/DESCRIPTION | 18 getCRUCLdata-0.3.2/getCRUCLdata/MD5 | 51 getCRUCLdata-0.3.2/getCRUCLdata/NEWS.md | 16 getCRUCLdata-0.3.2/getCRUCLdata/R/create_CRU_df.R | 4 getCRUCLdata-0.3.2/getCRUCLdata/R/create_CRU_stack.R | 4 getCRUCLdata-0.3.2/getCRUCLdata/R/getCRUCLdata-package.R |only getCRUCLdata-0.3.2/getCRUCLdata/R/get_CRU.R | 1 getCRUCLdata-0.3.2/getCRUCLdata/R/get_CRU_stack.R | 2 getCRUCLdata-0.3.2/getCRUCLdata/R/internal_functions.R | 1 getCRUCLdata-0.3.2/getCRUCLdata/R/zzz.R | 2 getCRUCLdata-0.3.2/getCRUCLdata/README.md | 57 getCRUCLdata-0.3.2/getCRUCLdata/build/vignette.rds |binary getCRUCLdata-0.3.2/getCRUCLdata/inst/doc/Advanced_use.R |only getCRUCLdata-0.3.2/getCRUCLdata/inst/doc/Advanced_use.Rmd |only getCRUCLdata-0.3.2/getCRUCLdata/inst/doc/Advanced_use.html |only getCRUCLdata-0.3.2/getCRUCLdata/inst/doc/getCRUCLdata.Rmd | 455 ++-- getCRUCLdata-0.3.2/getCRUCLdata/inst/doc/getCRUCLdata.html | 1074 +++++----- getCRUCLdata-0.3.2/getCRUCLdata/man/create_CRU_df.Rd | 23 getCRUCLdata-0.3.2/getCRUCLdata/man/create_CRU_stack.Rd | 23 getCRUCLdata-0.3.2/getCRUCLdata/man/getCRUCLdata-package.Rd |only getCRUCLdata-0.3.2/getCRUCLdata/man/get_CRU_df.Rd | 19 getCRUCLdata-0.3.2/getCRUCLdata/man/get_CRU_stack.Rd | 21 getCRUCLdata-0.3.2/getCRUCLdata/vignettes/Advanced_use.Rmd |only getCRUCLdata-0.3.2/getCRUCLdata/vignettes/getCRUCLdata.Rmd | 455 ++-- getCRUCLdata-0.3.2/getCRUCLdata/vignettes/getCRUCLdata.Rmd.orig |only getCRUCLdata-0.3.2/getCRUCLdata/vignettes/plot_t-1.png |only getCRUCLdata-0.3.2/getCRUCLdata/vignettes/precompile.R |only getCRUCLdata-0.3.2/getCRUCLdata/vignettes/violin_plot-1.png |only 35 files changed, 1311 insertions(+), 915 deletions(-)
Title: Get and Show Personal 'Google Scholar' Profile
Description: Provides functions to get personal 'Google Scholar'
profile data from web API and show it in table or figure format.
Author: Shixiang Wang [aut, cre] (<https://orcid.org/0000-0001-9855-7357>)
Maintainer: Shixiang Wang <w_shixiang@163.com>
Diff between tinyscholar versions 0.1.1 dated 2020-09-19 and 0.1.2 dated 2020-10-26
DESCRIPTION | 8 - MD5 | 10 - NEWS.md | 4 R/tidyscholar.R | 46 ++++++-- inst/doc/tinyscholar.html | 240 +++++++++++++++++++++++++++------------------- man/tinyscholar.Rd | 3 6 files changed, 189 insertions(+), 122 deletions(-)
Title: Expander Functions for Generating Full Gradient and Hessian from
Single-Slot and Multi-Slot Base Distributions
Description: The expander functions rely on the mathematics developed for the Hessian-definiteness invariance theorem for linear projection transformations of variables, described in authors' paper, to generate the full, high-dimensional gradient and Hessian from the lower-dimensional derivative objects. This greatly relieves the computational burden of generating the regression-function derivatives, which in turn can be fed into any optimization routine that utilizes such derivatives. The theorem guarantees that Hessian definiteness is preserved, meaning that reasoning about this property can be performed in the low-dimensional space of the base distribution. This is often a much easier task than its equivalent in the full, high-dimensional space. Definiteness of Hessian can be useful in selecting optimization/sampling algorithms such as Newton-Raphson optimization or its sampling equivalent, the Stochastic Newton Sampler. Finally, in addition to being a computational tool, the regression expansion framework is of conceptual value by offering new opportunities to generate novel regression problems.
Author: Alireza S. Mahani, Mansour T.A. Sharabiani
Maintainer: Alireza S. Mahani <alireza.s.mahani@gmail.com>
Diff between RegressionFactory versions 0.7.2 dated 2016-09-08 and 0.7.4 dated 2020-10-26
ChangeLog | 6 +++ DESCRIPTION | 10 ++--- MD5 | 20 +++++----- R/aaa.R | 2 - build/vignette.rds |binary inst/doc/RegressionFactory.R | 76 +--------------------------------------- inst/doc/RegressionFactory.Rnw | 67 ----------------------------------- inst/doc/RegressionFactory.pdf |binary man/regfac.expand.1par.Rd | 2 - man/regfac.expand.2par.Rd | 2 - vignettes/RegressionFactory.Rnw | 67 ----------------------------------- 11 files changed, 26 insertions(+), 226 deletions(-)
More information about RegressionFactory at CRAN
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Title: Mean-Parametrized Conway-Maxwell Poisson (COM-Poisson)
Regression
Description: A collection of functions for estimation, testing and diagnostic checking for the mean-parametrized Conway-Maxwell-Poisson (COM-Poisson) regression model of Huang (2017) <doi:10.1177/1471082X17697749>.
Author: Thomas Fung [aut, cre] (<https://orcid.org/0000-0003-2601-0728>),
Aya Alwan [aut],
Justin Wishart [aut] (<https://orcid.org/0000-0002-8235-1845>),
Alan Huang [aut]
Maintainer: Thomas Fung <thomas.fung.dr@gmail.com>
Diff between mpcmp versions 0.3.5 dated 2020-10-19 and 0.3.6 dated 2020-10-26
mpcmp-0.3.5/mpcmp/man/gg_plot.Rd |only mpcmp-0.3.6/mpcmp/DESCRIPTION | 12 ++++---- mpcmp-0.3.6/mpcmp/MD5 | 36 ++++++++++++------------ mpcmp-0.3.6/mpcmp/NAMESPACE | 1 mpcmp-0.3.6/mpcmp/R/Inference.R | 10 +++--- mpcmp-0.3.6/mpcmp/R/glm.cmp.R | 4 +- mpcmp-0.3.6/mpcmp/R/graphics_related.R | 37 ++++++++++++++----------- mpcmp-0.3.6/mpcmp/R/mpcmp-package.R | 4 +- mpcmp-0.3.6/mpcmp/inst/WORDLIST | 6 ++++ mpcmp-0.3.6/mpcmp/man/PIT_Plot.Rd | 2 - mpcmp-0.3.6/mpcmp/man/PIT_ggPlot.Rd | 4 +- mpcmp-0.3.6/mpcmp/man/autoplot.cmp.Rd |only mpcmp-0.3.6/mpcmp/man/fish.Rd | 2 - mpcmp-0.3.6/mpcmp/man/glm.cmp.Rd | 4 +- mpcmp-0.3.6/mpcmp/man/plot.cmp.Rd | 2 - mpcmp-0.3.6/mpcmp/man/takeoverbids.Rd | 2 - mpcmp-0.3.6/mpcmp/src/utility.cpp | 2 - mpcmp-0.3.6/mpcmp/tests/testthat/Rplots.pdf |binary mpcmp-0.3.6/mpcmp/tests/testthat/test_update.R | 2 - mpcmp-0.3.6/mpcmp/vignettes/library.bib | 15 ++++++++++ 20 files changed, 87 insertions(+), 58 deletions(-)
Title: moDel Agnostic Language for Exploration and eXplanation
Description: Unverified black box model is the path to the failure. Opaqueness leads to distrust.
Distrust leads to ignoration. Ignoration leads to rejection.
DALEX package xrays any model and helps to explore and explain its behaviour.
Machine Learning (ML) models are widely used and have various applications in classification
or regression. Models created with boosting, bagging, stacking or similar techniques are often
used due to their high performance. But such black-box models usually lack of direct interpretability.
DALEX package contains various methods that help to understand the link between input variables
and model output. Implemented methods help to explore model on the level of a single instance
as well as a level of the whole dataset.
All model explainers are model agnostic and can be compared across different models.
DALEX package is the cornerstone for 'DrWhy.AI' universe of packages for visual model exploration.
Find more details in (Biecek 2018) <arXiv:1806.08915>.
Author: Przemyslaw Biecek [aut, cre] (<https://orcid.org/0000-0001-8423-1823>),
Szymon Maksymiuk [aut] (<https://orcid.org/0000-0002-3120-1601>),
Hubert Baniecki [aut] (<https://orcid.org/0000-0001-6661-5364>)
Maintainer: Przemyslaw Biecek <przemyslaw.biecek@gmail.com>
Diff between DALEX versions 2.0 dated 2020-09-04 and 2.0.1 dated 2020-10-26
DESCRIPTION | 6 +-- MD5 | 60 ++++++++++++++++---------------- R/explain.R | 9 +++- R/misc.R | 2 - R/misc_theme_drwhy.R | 8 +++- R/model_diagnostics.R | 16 ++++++-- R/model_parts.R | 2 - R/model_performance.R | 2 - R/model_profile.R | 6 +-- R/model_variable_effect.R | 2 - R/plot_model_parts.R | 12 +++--- R/plot_model_profile.R | 14 +++---- R/plot_predict_parts.R | 36 +++++++++---------- R/plot_predict_profile.R | 18 ++++----- R/predict_diagnostics.R | 2 - R/predict_parts.R | 2 - R/predict_profile.R | 2 - man/model_diagnostics.Rd | 4 +- man/model_parts.Rd | 2 - man/model_performance.Rd | 2 - man/model_profile.Rd | 4 +- man/plot.model_parts.Rd | 12 +++--- man/plot.model_profile.Rd | 14 +++---- man/plot.predict_parts.Rd | 36 +++++++++---------- man/plot.predict_profile.Rd | 18 ++++----- man/predict_diagnostics.Rd | 2 - man/predict_parts.Rd | 2 - man/predict_profile.Rd | 2 - man/variable_effect.Rd | 2 - tests/testthat/test_explain.R | 3 + tests/testthat/test_model_diagnostics.R | 12 ++++++ 31 files changed, 172 insertions(+), 142 deletions(-)
Title: Detrended Fluctuation Analysis
Description: Contains the Detrended Fluctuation Analysis (DFA), Detrended Cross-Correlation Analysis (DCCA), Detrended Cross-Correlation Coefficient (rhoDCCA), Delta Amplitude Detrended Cross-Correlation Coefficient (DeltarhoDCCA), log amplitude Detrended Fluctuation Analysis (DeltalogDFA), two DFA automatic methods for identification of crossover points and a Deltalog automatic method for identification of reference channels.
Author: Victor Barreto Mesquita[aut,cre],Paulo Canas Rodrigues[ctb], Florencio Mendes Oliveira Filho[ctb]
Maintainer: Victor Barreto Mesquita <victormesquita40@hotmail.com>
Diff between DFA versions 0.1.0 dated 2020-07-01 and 0.9.0 dated 2020-10-26
DFA-0.1.0/DFA/data/data1.rda |only DFA-0.1.0/DFA/data/data2.rda |only DFA-0.1.0/DFA/data/data3.rda |only DFA-0.1.0/DFA/data/data4.rda |only DFA-0.1.0/DFA/data/data5.rda |only DFA-0.1.0/DFA/data/data6.rda |only DFA-0.1.0/DFA/man/data1.Rd |only DFA-0.1.0/DFA/man/data2.Rd |only DFA-0.1.0/DFA/man/data3.Rd |only DFA-0.1.0/DFA/man/data4.Rd |only DFA-0.1.0/DFA/man/data5.Rd |only DFA-0.1.0/DFA/man/data6.Rd |only DFA-0.1.0/DFA/man/secante.Rd |only DFA-0.9.0/DFA/DESCRIPTION | 6 DFA-0.9.0/DFA/MD5 | 44 +++--- DFA-0.9.0/DFA/R/DFA.R | 252 +++++++++++++++++++++-------------- DFA-0.9.0/DFA/data/EEGsignal.rda |only DFA-0.9.0/DFA/data/IXIC2008.rda |only DFA-0.9.0/DFA/data/LSE.L2008.rda |only DFA-0.9.0/DFA/data/NYA2008.rda |only DFA-0.9.0/DFA/data/SSEC2008.rda |only DFA-0.9.0/DFA/data/lrcorrelation.rda |only DFA-0.9.0/DFA/man/AUC.Rd | 75 ++++++---- DFA-0.9.0/DFA/man/DCCA.Rd | 68 +++++---- DFA-0.9.0/DFA/man/DFA.Rd | 55 +++++-- DFA-0.9.0/DFA/man/DeltaDFA.Rd | 62 +++++--- DFA-0.9.0/DFA/man/Deltarho.Rd | 99 ++++++++----- DFA-0.9.0/DFA/man/EEGsignal.Rd |only DFA-0.9.0/DFA/man/IXIC2008.Rd |only DFA-0.9.0/DFA/man/LSE.L2008.Rd |only DFA-0.9.0/DFA/man/NYA2008.Rd |only DFA-0.9.0/DFA/man/SSEC2008.Rd |only DFA-0.9.0/DFA/man/euclidean.Rd | 56 ++++--- DFA-0.9.0/DFA/man/lrcorrelation.Rd |only DFA-0.9.0/DFA/man/rhoDCCA.Rd | 67 +++++---- DFA-0.9.0/DFA/man/secant.Rd |only 36 files changed, 480 insertions(+), 304 deletions(-)
Title: Compute Chinese Capital Stocks
Description: Compute Chinese capital stocks in provinces level, based on Zhang (2008) <DOI:10.1080/14765280802028302>.
Author: Pu Chen [aut, cre]
Maintainer: Pu Chen <shengnehs@qq.com>
Diff between CHNCapitalStock versions 0.0.2 dated 2020-06-25 and 0.1.0 dated 2020-10-26
DESCRIPTION | 7 ++-- MD5 | 20 ++++++++------ NAMESPACE | 3 +- R/CompK.R | 57 ++++++++++++++++------------------------ R/CompK_CP.R |only R/CompK_ZJ.R |only R/asset.R | 1 data/asset.rda |binary man/CompK.Rd | 28 ++++++++++++++++--- man/CompK_CP.Rd |only man/CompK_ZJ.Rd |only man/asset.Rd | 3 +- tests/testthat/test-provinces.R | 7 ++++ 13 files changed, 75 insertions(+), 51 deletions(-)
More information about CHNCapitalStock at CRAN
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