Title: Accessing the Wordbank Database
Description: Tools for connecting to Wordbank, an open repository for
developmental vocabulary data. For more information on the
underlying data, see <http://wordbank.stanford.edu>.
Author: Mika Braginsky [aut, cre],
Daniel Yurovsky [ctb],
Michael Frank [ctb],
Danielle Kellier [ctb]
Maintainer: Mika Braginsky <mika.br@gmail.com>
Diff between wordbankr versions 0.3.0 dated 2018-03-14 and 0.3.1 dated 2020-11-13
DESCRIPTION | 24 - MD5 | 30 - NAMESPACE | 3 NEWS.md | 22 - R/aoa.R | 29 - R/quantiles.R |only R/wordbankr.R | 21 - build/vignette.rds |binary inst/doc/wordbankr.R | 30 - inst/doc/wordbankr.Rmd | 16 inst/doc/wordbankr.html | 787 ++++++++++++++++++++++++++++------------- man/fit_aoa.Rd | 16 man/fit_vocab_quantiles.Rd |only man/get_administration_data.Rd | 9 man/get_instrument_data.Rd | 10 man/get_sources.Rd | 3 vignettes/wordbankr.Rmd | 16 17 files changed, 707 insertions(+), 309 deletions(-)
Title: Setup, Run and Analyze 'NetLogo' Model Simulations from 'R' via
'XML'
Description: Setup, run and analyze 'NetLogo' (<https://ccl.northwestern.edu/netlogo/>) model simulations in 'R'.
'nlrx' experiments use a similar structure as 'NetLogos' Behavior Space experiments.
However, 'nlrx' offers more flexibility and additional tools for running and analyzing complex simulation designs and sensitivity analyses.
The user defines all information that is needed in an intuitive framework, using class objects.
Experiments are submitted from 'R' to 'NetLogo' via 'XML' files that are dynamically written, based on specifications defined by the user.
By nesting model calls in future environments, large simulation design with many runs can be executed in parallel.
This also enables simulating 'NetLogo' experiments on remote high performance computing machines.
In order to use this package, 'Java' and 'NetLogo' (>= 5.3.1) need to be available on the executing system.
Author: Jan Salecker [aut, cre] (<https://orcid.org/0000-0002-9000-4229>),
Marco Sciaini [aut] (<https://orcid.org/0000-0002-3042-5435>),
Marina Papadopoulou [rev] (Marina reviewed the package for ropensci,
see <https://github.com/ropensci/software-review/issues/262>)
Maintainer: Jan Salecker <jsaleck@gwdg.de>
Diff between nlrx versions 0.4.1 dated 2020-02-07 and 0.4.2 dated 2020-11-13
nlrx-0.4.1/nlrx/vignettes/calibration.R |only nlrx-0.4.1/nlrx/vignettes/calibration.html |only nlrx-0.4.2/nlrx/DESCRIPTION | 12 nlrx-0.4.2/nlrx/MD5 | 173 nlrx-0.4.2/nlrx/NAMESPACE | 1 nlrx-0.4.2/nlrx/NEWS.md | 16 nlrx-0.4.2/nlrx/R/analyze_nl.R | 95 nlrx-0.4.2/nlrx/R/class_constr.R | 4 nlrx-0.4.2/nlrx/R/download_netlogo.R | 3 nlrx-0.4.2/nlrx/R/eval_simoutput.R |only nlrx-0.4.2/nlrx/R/export_nl.R | 2 nlrx-0.4.2/nlrx/R/nldoc.R | 2 nlrx-0.4.2/nlrx/R/nldoc_network.R | 2 nlrx-0.4.2/nlrx/R/run_nl.R | 107 nlrx-0.4.2/nlrx/R/sample_data.R | 11 nlrx-0.4.2/nlrx/R/simdesign_helper.R | 6 nlrx-0.4.2/nlrx/R/util_runnl.R | 21 nlrx-0.4.2/nlrx/R/util_runnl_dyn.R | 32 nlrx-0.4.2/nlrx/R/util_stuff.R | 14 nlrx-0.4.2/nlrx/R/write_simoutput.R |only nlrx-0.4.2/nlrx/README.md | 6 nlrx-0.4.2/nlrx/build/vignette.rds |binary nlrx-0.4.2/nlrx/data/nl_ff.rda |binary nlrx-0.4.2/nlrx/data/nl_gensa.rda |only nlrx-0.4.2/nlrx/data/nl_lhs.rda |binary nlrx-0.4.2/nlrx/data/nl_simple.rda |binary nlrx-0.4.2/nlrx/inst/doc/abc.R | 30 nlrx-0.4.2/nlrx/inst/doc/abc.Rmd | 2 nlrx-0.4.2/nlrx/inst/doc/abc.html | 31 nlrx-0.4.2/nlrx/inst/doc/furthernotes.R | 26 nlrx-0.4.2/nlrx/inst/doc/furthernotes.Rmd | 22 nlrx-0.4.2/nlrx/inst/doc/furthernotes.html | 228 - nlrx-0.4.2/nlrx/inst/doc/getstarted.R | 67 nlrx-0.4.2/nlrx/inst/doc/getstarted.Rmd | 66 nlrx-0.4.2/nlrx/inst/doc/getstarted.html | 95 nlrx-0.4.2/nlrx/inst/doc/optimization.R | 28 nlrx-0.4.2/nlrx/inst/doc/optimization.html | 31 nlrx-0.4.2/nlrx/inst/doc/sensitivity.R | 30 nlrx-0.4.2/nlrx/inst/doc/sensitivity.html | 31 nlrx-0.4.2/nlrx/inst/doc/simdesign-examples.R | 18 nlrx-0.4.2/nlrx/inst/doc/simdesign-examples.html | 31 nlrx-0.4.2/nlrx/man/analyze_nl.Rd | 3 nlrx-0.4.2/nlrx/man/download_netlogo.Rd | 2 nlrx-0.4.2/nlrx/man/eval_simoutput.Rd |only nlrx-0.4.2/nlrx/man/experiment.Rd | 31 nlrx-0.4.2/nlrx/man/export_nl.Rd | 2 nlrx-0.4.2/nlrx/man/nl.Rd | 15 nlrx-0.4.2/nlrx/man/nl_distinct.Rd | 4 nlrx-0.4.2/nlrx/man/nl_eFast.Rd | 4 nlrx-0.4.2/nlrx/man/nl_ff.Rd | 4 nlrx-0.4.2/nlrx/man/nl_gensa.Rd |only nlrx-0.4.2/nlrx/man/nl_lhs.Rd | 4 nlrx-0.4.2/nlrx/man/nl_morris.Rd | 4 nlrx-0.4.2/nlrx/man/nl_simple.Rd | 4 nlrx-0.4.2/nlrx/man/nl_sobol.Rd | 4 nlrx-0.4.2/nlrx/man/nl_sobol2007.Rd | 4 nlrx-0.4.2/nlrx/man/nl_soboljansen.Rd | 4 nlrx-0.4.2/nlrx/man/nl_spatial.Rd | 4 nlrx-0.4.2/nlrx/man/nldoc.Rd | 17 nlrx-0.4.2/nlrx/man/nldoc_network.Rd | 2 nlrx-0.4.2/nlrx/man/nldoc_write_nldoc.Rd | 14 nlrx-0.4.2/nlrx/man/nlrx-package.Rd | 4 nlrx-0.4.2/nlrx/man/run_nl_all.Rd | 11 nlrx-0.4.2/nlrx/man/run_nl_dyn.Rd | 11 nlrx-0.4.2/nlrx/man/run_nl_one.Rd | 13 nlrx-0.4.2/nlrx/man/simdesign.Rd | 11 nlrx-0.4.2/nlrx/man/simdesign_ABCmcmc_Marjoram.Rd | 23 nlrx-0.4.2/nlrx/man/simdesign_ABCmcmc_Marjoram_original.Rd | 24 nlrx-0.4.2/nlrx/man/simdesign_ABCmcmc_Wegmann.Rd | 24 nlrx-0.4.2/nlrx/man/simdesign_GenAlg.Rd | 11 nlrx-0.4.2/nlrx/man/simdesign_GenSA.Rd | 3 nlrx-0.4.2/nlrx/man/simdesign_morris.Rd | 3 nlrx-0.4.2/nlrx/man/simdesign_sobol.Rd | 11 nlrx-0.4.2/nlrx/man/simdesign_soboljansen.Rd | 3 nlrx-0.4.2/nlrx/man/util_cleanup.Rd | 9 nlrx-0.4.2/nlrx/man/util_run_nl_dyn_ABCmcmc.Rd | 11 nlrx-0.4.2/nlrx/man/util_run_nl_dyn_GenAlg.Rd | 5 nlrx-0.4.2/nlrx/man/util_run_nl_dyn_GenAlg_fn.Rd | 17 nlrx-0.4.2/nlrx/man/util_run_nl_dyn_GenSA.Rd | 5 nlrx-0.4.2/nlrx/man/util_run_nl_dyn_GenSA_fn.Rd | 13 nlrx-0.4.2/nlrx/man/write_simoutput.Rd | 2 nlrx-0.4.2/nlrx/tests/testthat/WSP.nlogo | 1910 +++++------ nlrx-0.4.2/nlrx/tests/testthat/WSP.nls | 52 nlrx-0.4.2/nlrx/tests/testthat/test-exe1_run_nl.R | 4 nlrx-0.4.2/nlrx/tests/testthat/test-simul_analyze_nl.R | 6 nlrx-0.4.2/nlrx/tests/testthat/test-simul_unnest_simoutput.R | 15 nlrx-0.4.2/nlrx/tests/testthat/test-util_download_netlogo.R | 210 - nlrx-0.4.2/nlrx/tests/testthat/test-util_eval.R | 21 nlrx-0.4.2/nlrx/vignettes/abc.Rmd | 2 nlrx-0.4.2/nlrx/vignettes/furthernotes.Rmd | 22 nlrx-0.4.2/nlrx/vignettes/getstarted.Rmd | 66 91 files changed, 2197 insertions(+), 1694 deletions(-)
Title: Accessing Data Stored in 'LaBB-CAT' Instances
Description: 'LaBB-CAT' is a web-based language corpus management
system developed by the New Zealand Institute of Language, Brain
and Behaviour (NZILBB) - see <https://labbcat.canterbury.ac.nz>.
This package defines functions for accessing corpus data in a 'LaBB-CAT'
instance. You must have at least version 20200812.1253 of 'LaBB-CAT'
to use this package.
For more information about 'LaBB-CAT', see
Robert Fromont and Jennifer Hay (2008) <doi:10.3366/E1749503208000142>
or
Robert Fromont (2017) <doi:10.1016/j.csl.2017.01.004>.
Author: Robert Fromont [aut, cre]
Maintainer: Robert Fromont <robert.fromont@canterbury.ac.nz>
Diff between nzilbb.labbcat versions 0.6-1 dated 2020-08-26 and 0.6-2 dated 2020-11-13
DESCRIPTION | 12 +++--- MD5 | 12 +++--- R/labbcatCredentials.R | 59 ++++++++++++++++--------------- build/partial.rdb |binary tests/testthat/test-getMatchAlignments.R | 2 + tests/testthat/test-getMatchLabels.R | 2 + tests/testthat/test-getMatches.R | 1 7 files changed, 49 insertions(+), 39 deletions(-)
More information about nzilbb.labbcat at CRAN
Permanent link
Title: Historical and Ahistorical Population Projection Matrix Analysis
Description: Creates matrix population models for use in population ecological
analyses. Specializes on the construction of historical matrices,
which are 2d matrices comprising 3 time intervals of demographic
information. Estimates both raw and function-based forms of
historical and standard ahistorical matrices. Methodology based on
Ehrlen (2000) <doi:10.1890/0012-9658(2000)081[1675:TDOPPD]2.0.CO;2>.
Author: Richard P. Shefferson [aut, cre]
(<https://orcid.org/0000-0002-5234-3131>),
Johan Ehrlen [aut] (<https://orcid.org/0000-0001-8539-8967>)
Maintainer: Richard P. Shefferson <cdorm@g.ecc.u-tokyo.ac.jp>
Diff between lefko3 versions 3.1.0 dated 2020-11-12 and 3.1.1 dated 2020-11-13
DESCRIPTION | 8 MD5 | 16 inst/doc/Chapter1.html | 125 +-- inst/doc/Chapter2a.html | 1144 ++++++++++++++-------------- inst/doc/Chapter2b.html | 1794 ++++++++++++++++++++++---------------------- inst/doc/Chapter2c.html | 1618 ++++++++++++++++++++-------------------- inst/doc/Chapter3a.html | 1150 ++++++++++++++-------------- inst/doc/Chapter3b.html | 1894 +++++++++++++++++++++++------------------------ src/MatrixEstimators.cpp | 12 9 files changed, 3869 insertions(+), 3892 deletions(-)
Title: Bayesian Estimation of (Sparse) Latent Factor Stochastic
Volatility Models
Description: Markov chain Monte Carlo (MCMC) sampler for fully Bayesian estimation of latent factor stochastic volatility models with interweaving <doi:10.1080/10618600.2017.1322091>. Sparsity can be achieved through the usage of Normal-Gamma priors on the factor loading matrix <doi:10.1016/j.jeconom.2018.11.007>.
Author: Gregor Kastner [aut, cre] (<https://orcid.org/0000-0002-8237-8271>),
Darjus Hosszejni [ctb] (<https://orcid.org/0000-0002-3803-691X>)
Maintainer: Gregor Kastner <gregor.kastner@aau.at>
Diff between factorstochvol versions 0.10.0 dated 2020-11-09 and 0.10.1 dated 2020-11-13
factorstochvol-0.10.0/factorstochvol/vignettes/Figures |only factorstochvol-0.10.1/factorstochvol/DESCRIPTION | 8 factorstochvol-0.10.1/factorstochvol/MD5 | 67 +-- factorstochvol-0.10.1/factorstochvol/NAMESPACE | 2 factorstochvol-0.10.1/factorstochvol/NEWS | 8 factorstochvol-0.10.1/factorstochvol/R/plotting.R | 45 ++ factorstochvol-0.10.1/factorstochvol/R/utilities_fsvdraws.R | 2 factorstochvol-0.10.1/factorstochvol/R/wrappers.R | 23 - factorstochvol-0.10.1/factorstochvol/inst/doc/paper.R | 198 ++++++++++ factorstochvol-0.10.1/factorstochvol/inst/doc/paper.Rnw | 215 +++++++---- factorstochvol-0.10.1/factorstochvol/inst/doc/paper.pdf |binary factorstochvol-0.10.1/factorstochvol/man/comtimeplot.Rd | 11 factorstochvol-0.10.1/factorstochvol/man/corimageplot.Rd | 1 factorstochvol-0.10.1/factorstochvol/man/corplot.Rd | 1 factorstochvol-0.10.1/factorstochvol/man/cortimeplot.Rd | 1 factorstochvol-0.10.1/factorstochvol/man/evdiag.Rd |only factorstochvol-0.10.1/factorstochvol/man/facloadcredplot.Rd | 1 factorstochvol-0.10.1/factorstochvol/man/facloaddensplot.Rd | 1 factorstochvol-0.10.1/factorstochvol/man/facloadpairplot.Rd | 1 factorstochvol-0.10.1/factorstochvol/man/facloadpointplot.Rd | 1 factorstochvol-0.10.1/factorstochvol/man/facloadtraceplot.Rd | 1 factorstochvol-0.10.1/factorstochvol/man/fsvsample.Rd | 14 factorstochvol-0.10.1/factorstochvol/man/logvartimeplot.Rd | 1 factorstochvol-0.10.1/factorstochvol/man/paratraceplot.Rd | 1 factorstochvol-0.10.1/factorstochvol/man/plot.fsvdraws.Rd | 1 factorstochvol-0.10.1/factorstochvol/man/plotalot.Rd | 1 factorstochvol-0.10.1/factorstochvol/man/voltimeplot.Rd | 1 factorstochvol-0.10.1/factorstochvol/vignettes/paper.Rnw | 215 +++++++---- factorstochvol-0.10.1/factorstochvol/vignettes/ref.bib | 103 +++-- 29 files changed, 668 insertions(+), 256 deletions(-)
More information about factorstochvol at CRAN
Permanent link
Title: Utility Functions for Production R Code
Description: A suite of utility functions providing functionality commonly
needed for production level projects such as logging, error handling,
and cache management.
Author: Jonathan Callahan [aut, cre],
Eli Grosman [aut],
Spencer Pease [aut],
Thomas Bergamaschi [aut]
Maintainer: Jonathan Callahan <jonathan.s.callahan@gmail.com>
Diff between MazamaCoreUtils versions 0.4.4 dated 2020-07-20 and 0.4.6 dated 2020-11-13
DESCRIPTION | 6 MD5 | 26 - NEWS.md | 9 R/devtools_check.R | 57 ++- R/html_getTables.R | 20 - build/vignette.rds |binary inst/doc/cache-management.Rmd | 4 inst/doc/cache-management.html | 584 +++++++++++++------------------- inst/doc/date-parsing.html | 417 ++++++++++------------ inst/doc/error-handling.html | 647 +++++++++++++++-------------------- inst/doc/logging.html | 746 +++++++++++++++++++---------------------- man/html_getTables.Rd | 7 man/packageCheck.Rd | 30 + vignettes/cache-management.Rmd | 4 14 files changed, 1190 insertions(+), 1367 deletions(-)
More information about MazamaCoreUtils at CRAN
Permanent link
Title: Accessing the 'CHILDES' Database
Description: Tools for connecting to 'CHILDES', an open repository for
transcripts of parent-child interaction. For more information on the
underlying data, see <https://childes-db.stanford.edu>.
Author: Mika Braginsky [aut, cre],
Alessandro Sanchez [aut, ctb],
Daniel Yurovsky [aut],
Kyle MacDonald [ctb],
Stephan Meylan [ctb],
Jessica Mankewitz [ctb]
Maintainer: Mika Braginsky <mika.br@gmail.com>
Diff between childesr versions 0.1.2 dated 2019-10-17 and 0.2.1 dated 2020-11-13
childesr-0.1.2/childesr/man/get_database_version.Rd |only childesr-0.2.1/childesr/DESCRIPTION | 27 childesr-0.2.1/childesr/MD5 | 40 - childesr-0.2.1/childesr/NAMESPACE | 2 childesr-0.2.1/childesr/NEWS.md | 6 childesr-0.2.1/childesr/R/childesr.R | 47 - childesr-0.2.1/childesr/build/vignette.rds |binary childesr-0.2.1/childesr/inst/doc/access_childes_db.R | 35 - childesr-0.2.1/childesr/inst/doc/access_childes_db.Rmd | 13 childesr-0.2.1/childesr/inst/doc/access_childes_db.html | 460 +++++++++------- childesr-0.2.1/childesr/man/get_collections.Rd | 3 childesr-0.2.1/childesr/man/get_content.Rd | 26 childesr-0.2.1/childesr/man/get_contexts.Rd | 28 childesr-0.2.1/childesr/man/get_corpora.Rd | 3 childesr-0.2.1/childesr/man/get_participants.Rd | 23 childesr-0.2.1/childesr/man/get_speaker_statistics.Rd | 23 childesr-0.2.1/childesr/man/get_sql_query.Rd |only childesr-0.2.1/childesr/man/get_tokens.Rd | 32 - childesr-0.2.1/childesr/man/get_transcripts.Rd | 11 childesr-0.2.1/childesr/man/get_types.Rd | 25 childesr-0.2.1/childesr/man/get_utterances.Rd | 24 childesr-0.2.1/childesr/vignettes/access_childes_db.Rmd | 13 22 files changed, 538 insertions(+), 303 deletions(-)
Title: Implementations of Semi-Supervised Learning Approaches for
Classification
Description: A collection of implementations of semi-supervised classifiers
and methods to evaluate their performance. The package includes implementations
of, among others, Implicitly Constrained Learning, Moment Constrained Learning,
the Transductive SVM, Manifold regularization, Maximum Contrastive Pessimistic
Likelihood estimation, S4VM and WellSVM.
Author: Jesse Krijthe [aut, cre]
Maintainer: Jesse Krijthe <jkrijthe@gmail.com>
Diff between RSSL versions 0.9.2 dated 2020-09-12 and 0.9.3 dated 2020-11-13
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/LogisticRegression.R | 1 - 3 files changed, 5 insertions(+), 6 deletions(-)
Title: 'Rcpp' Dynamic Programming
Description: Dynamic Programming implemented in 'Rcpp'. Includes example partition and out of sample fitting applications. Also supplies additional custom coders for the 'vtreat' package.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between RcppDynProg versions 0.1.5 dated 2020-10-17 and 0.1.6 dated 2020-11-13
RcppDynProg-0.1.5/RcppDynProg/R/run_package_tests.R |only RcppDynProg-0.1.5/RcppDynProg/man/run_RcppDynProg_tests.Rd |only RcppDynProg-0.1.6/RcppDynProg/DESCRIPTION | 10 RcppDynProg-0.1.6/RcppDynProg/MD5 | 14 RcppDynProg-0.1.6/RcppDynProg/NAMESPACE | 1 RcppDynProg-0.1.6/RcppDynProg/NEWS.md | 4 RcppDynProg-0.1.6/RcppDynProg/inst/doc/RcppDynProg.html | 27 RcppDynProg-0.1.6/RcppDynProg/inst/doc/Segmentation.html | 407 ++++++------- RcppDynProg-0.1.6/RcppDynProg/inst/doc/SegmentationL.html | 267 ++++---- 9 files changed, 359 insertions(+), 371 deletions(-)
Title: NHDPlus Tools
Description: Tools for traversing and working with National Hydrography Dataset Plus (NHDPlus) data. All methods implemented in 'nhdplusTools' are available in the NHDPlus documentation available from the US Environmental Protection Agency <https://www.epa.gov/waterdata/basic-information>.
Author: David Blodgett [aut, cre],
Mike Johnson [ctb]
Maintainer: David Blodgett <dblodgett@usgs.gov>
Diff between nhdplusTools versions 0.3.15 dated 2020-09-15 and 0.3.16 dated 2020-11-13
DESCRIPTION | 8 MD5 | 48 - NEWS.md | 6 R/downloading_tools.R | 9 R/get_nhdplushr.R | 716 ++++++++++---------- R/get_nldi.R | 616 ++++++++--------- R/get_paths.R | 495 +++++++------- R/index_nhdplus.R | 2 R/plot_nhdplus.R | 906 +++++++++++++------------- R/subset_nhdplus.R | 1274 +++++++++++++++++++------------------ README.md | 364 +++++----- inst/doc/nhdplusTools.Rmd | 698 ++++++++++---------- inst/doc/plot_nhdplus.Rmd | 491 +++++++------- inst/doc/plot_nhdplus.html | 1 man/download_nhdplusv2.Rd | 8 man/get_flowline_index.Rd | 2 man/get_nldi_basin.Rd | 84 +- man/plot_nhdplus.Rd | 8 man/subset_nhdplus.Rd | 8 tests/testthat/test_calc_network.R | 419 ++++++------ tests/testthat/test_get_nldi.R | 284 ++++---- tests/testthat/test_plot_nhdplus.R | 619 +++++++++-------- tests/testthat/test_subset.R | 56 + vignettes/nhdplusTools.Rmd | 698 ++++++++++---------- vignettes/plot_nhdplus.Rmd | 491 +++++++------- 25 files changed, 4269 insertions(+), 4042 deletions(-)
Title: Distance Metrics for Image Color Similarity
Description: Loads and displays images, selectively masks specified background
colors, bins pixels by color using either data-dependent or
automatically generated color bins, quantitatively measures color
similarity among images using one of several distance metrics for
comparing pixel color clusters, and clusters images by object color
similarity. Uses CIELAB, RGB, or HSV color spaces. Originally written
for use with organism coloration (reef fish color diversity, butterfly
mimicry, etc), but easily applicable for any image set.
Author: Hannah Weller [aut, cre]
Maintainer: Hannah Weller <hannahiweller@gmail.com>
Diff between colordistance versions 1.1.0 dated 2019-01-12 and 1.1.1 dated 2020-11-13
colordistance-1.1.0/colordistance/vignettes/Heliconius_color_tree.newick |only colordistance-1.1.1/colordistance/DESCRIPTION | 12 colordistance-1.1.1/colordistance/MD5 | 124 - colordistance-1.1.1/colordistance/NAMESPACE | 57 colordistance-1.1.1/colordistance/NEWS.md | 6 colordistance-1.1.1/colordistance/R/01_raw_image_handling.R | 45 colordistance-1.1.1/colordistance/R/01b_remove_background.R |only colordistance-1.1.1/colordistance/R/02_color_space_conversion.R | 5 colordistance-1.1.1/colordistance/R/02a_histogram_color_clustering.R | 13 colordistance-1.1.1/colordistance/R/02b_Lab_color_clustering.R | 47 colordistance-1.1.1/colordistance/R/04_comparison_metrics.R | 8 colordistance-1.1.1/colordistance/R/05_output_visualization.R | 30 colordistance-1.1.1/colordistance/R/07_miscellaneous.R | 4 colordistance-1.1.1/colordistance/README.md | 25 colordistance-1.1.1/colordistance/build/vignette.rds |binary colordistance-1.1.1/colordistance/inst/doc/binning-methods.R | 256 +- colordistance-1.1.1/colordistance/inst/doc/binning-methods.Rmd | 6 colordistance-1.1.1/colordistance/inst/doc/binning-methods.html | 996 ++++++---- colordistance-1.1.1/colordistance/inst/doc/color-metrics.R | 54 colordistance-1.1.1/colordistance/inst/doc/color-metrics.Rmd | 2 colordistance-1.1.1/colordistance/inst/doc/color-metrics.html | 584 ++++- colordistance-1.1.1/colordistance/inst/doc/color-spaces.R | 164 - colordistance-1.1.1/colordistance/inst/doc/color-spaces.Rmd | 3 colordistance-1.1.1/colordistance/inst/doc/color-spaces.html | 655 ++++-- colordistance-1.1.1/colordistance/inst/doc/colordistance-introduction.R | 241 +- colordistance-1.1.1/colordistance/inst/doc/colordistance-introduction.Rmd | 6 colordistance-1.1.1/colordistance/inst/doc/colordistance-introduction.html | 930 +++++---- colordistance-1.1.1/colordistance/inst/doc/lab-analyses.R | 112 - colordistance-1.1.1/colordistance/inst/doc/lab-analyses.html | 694 ++++-- colordistance-1.1.1/colordistance/inst/extdata/chrysochroa_NPL.png |only colordistance-1.1.1/colordistance/man/EMDistance.Rd | 72 colordistance-1.1.1/colordistance/man/chisqDistance.Rd | 50 colordistance-1.1.1/colordistance/man/colorDistance.Rd | 60 colordistance-1.1.1/colordistance/man/combineClusters.Rd | 58 colordistance-1.1.1/colordistance/man/combineList.Rd | 70 colordistance-1.1.1/colordistance/man/convertColorSpace.Rd | 186 - colordistance-1.1.1/colordistance/man/exportTree.Rd | 80 colordistance-1.1.1/colordistance/man/extractClusters.Rd | 81 colordistance-1.1.1/colordistance/man/getColorDistanceMatrix.Rd | 192 - colordistance-1.1.1/colordistance/man/getHistColors.Rd | 52 colordistance-1.1.1/colordistance/man/getHistList.Rd | 207 +- colordistance-1.1.1/colordistance/man/getImageHist.Rd | 210 +- colordistance-1.1.1/colordistance/man/getImagePaths.Rd | 68 colordistance-1.1.1/colordistance/man/getKMeanColors.Rd | 156 - colordistance-1.1.1/colordistance/man/getKMeansList.Rd | 166 - colordistance-1.1.1/colordistance/man/getLabHist.Rd | 235 +- colordistance-1.1.1/colordistance/man/getLabHistList.Rd | 241 +- colordistance-1.1.1/colordistance/man/heatmapColorDistance.Rd | 103 - colordistance-1.1.1/colordistance/man/imageClusterPipeline.Rd | 357 +-- colordistance-1.1.1/colordistance/man/loadImage.Rd | 218 +- colordistance-1.1.1/colordistance/man/normalizeRGB.Rd | 86 colordistance-1.1.1/colordistance/man/orderClusters.Rd | 90 colordistance-1.1.1/colordistance/man/pause.Rd | 42 colordistance-1.1.1/colordistance/man/plotClusters.Rd | 118 - colordistance-1.1.1/colordistance/man/plotClustersMulti.Rd | 134 - colordistance-1.1.1/colordistance/man/plotHist.Rd | 101 - colordistance-1.1.1/colordistance/man/plotImage.Rd | 58 colordistance-1.1.1/colordistance/man/plotPixels.Rd | 171 - colordistance-1.1.1/colordistance/man/removeBackground.Rd |only colordistance-1.1.1/colordistance/man/scatter3dclusters.Rd | 127 - colordistance-1.1.1/colordistance/man/weightedPairsDistance.Rd | 103 - colordistance-1.1.1/colordistance/vignettes/binning-methods.Rmd | 6 colordistance-1.1.1/colordistance/vignettes/color-metrics.Rmd | 2 colordistance-1.1.1/colordistance/vignettes/color-spaces.Rmd | 3 colordistance-1.1.1/colordistance/vignettes/colordistance-introduction.Rmd | 6 65 files changed, 5138 insertions(+), 3850 deletions(-)
Title: DBI Connector to Presto
Description: Implements a 'DBI' compliant interface to Presto. Presto is
an open source distributed SQL query engine for running interactive
analytic queries against data sources of all sizes ranging from
gigabytes to petabytes: <https://prestodb.io/>.
Author: Onur Ismail Filiz [aut, cre],
Sergey Goder [aut],
John Myles White [ctb]
Maintainer: Onur Ismail Filiz <onur@fb.com>
Diff between RPresto versions 1.3.4 dated 2019-10-18 and 1.3.5 dated 2020-11-13
DESCRIPTION | 9 ++--- MD5 | 40 ++++++++++++---------- NAMESPACE | 12 ++++++ NEWS.md | 6 +++ R/PrestoResult.R | 7 ++- R/dbClearResult.R | 6 ++- R/dbGetInfo.R | 1 R/dbSendQuery.R | 3 + R/sql_escape_date.R |only R/sql_escape_datetime.R |only README.md | 8 ++-- man/PrestoResult-class.Rd | 2 + man/dplyr_function_implementations.Rd | 13 ++++++- tests/testthat/test-dbClearResult.R | 13 ++++--- tests/testthat/test-dbFetch.R | 5 +- tests/testthat/test-dbGetInfo.R | 6 ++- tests/testthat/test-dbGetQuery.R | 5 +- tests/testthat/test-dbIsValid.R | 21 ++++++++--- tests/testthat/test-dbListFields.R | 20 ++++++----- tests/testthat/test-db_query_fields.R | 54 ++++++++++++++++++++++++++++-- tests/testthat/test-sql_escape_date.R |only tests/testthat/test-sql_escape_datetime.R |only tests/testthat/utilities.R | 9 +++-- 23 files changed, 179 insertions(+), 61 deletions(-)
Title: Client for 'jq', a 'JSON' Processor
Description: Client for 'jq', a 'JSON' processor (<https://stedolan.github.io/jq/>),
written in C. 'jq' allows the following with 'JSON' data: index into, parse,
do calculations, cut up and filter, change key names and values, perform
conditionals and comparisons, and more.
Author: Rich FitzJohn [aut],
Jeroen Ooms [aut],
Scott Chamberlain [aut, cre],
Stefan Milton Bache [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between jqr versions 1.1.0 dated 2018-10-22 and 1.2.0 dated 2020-11-13
jqr-1.1.0/jqr/README.md |only jqr-1.1.0/jqr/build |only jqr-1.1.0/jqr/inst |only jqr-1.1.0/jqr/vignettes |only jqr-1.2.0/jqr/DESCRIPTION | 15 ++++++----- jqr-1.2.0/jqr/LICENSE | 2 - jqr-1.2.0/jqr/MD5 | 39 ++++++++++--------------------- jqr-1.2.0/jqr/NEWS.md | 8 ++++++ jqr-1.2.0/jqr/R/jqr-package.R | 3 +- jqr-1.2.0/jqr/R/jqr.R | 1 jqr-1.2.0/jqr/R/pipe_helpers.R | 35 +++++++++++++++------------ jqr-1.2.0/jqr/cleanup | 2 - jqr-1.2.0/jqr/configure | 38 +++++++++++++----------------- jqr-1.2.0/jqr/man/commits.Rd | 4 ++- jqr-1.2.0/jqr/man/jq_flags.Rd | 21 +++++++++++++--- jqr-1.2.0/jqr/man/jqr.Rd | 4 +-- jqr-1.2.0/jqr/src/Makevars.win | 2 - jqr-1.2.0/jqr/tests/testthat/test-spec.R | 9 +++++++ 18 files changed, 102 insertions(+), 81 deletions(-)
Title: Nonparametric Analysis of Covariance
Description: A collection of R functions to perform nonparametric
analysis of covariance for regression curves or surfaces.
Testing the equality or parallelism of nonparametric curves
or surfaces is equivalent to analysis of variance (ANOVA) or
analysis of covariance (ANCOVA) for one-sample functional data.
Three different testing methods are available in the package,
including one based on L-2 distance, one based on an ANOVA
statistic, and one based on variance estimators.
Author: Xiaofeng Wang [aut, cre],
Xinge Ji [ctb]
Maintainer: Xiaofeng Wang <wangx6@ccf.org>
Diff between fANCOVA versions 0.5-1 dated 2010-10-20 and 0.6-1 dated 2020-11-13
fANCOVA-0.5-1/fANCOVA/LICENSE |only fANCOVA-0.5-1/fANCOVA/R/fANCOVA_all.R |only fANCOVA-0.5-1/fANCOVA/R/onload.R |only fANCOVA-0.6-1/fANCOVA/DESCRIPTION | 45 ++++++++++++++++++------------ fANCOVA-0.6-1/fANCOVA/MD5 |only fANCOVA-0.6-1/fANCOVA/NAMESPACE | 37 ++++++++++++++++++------ fANCOVA-0.6-1/fANCOVA/NEWS | 8 ++--- fANCOVA-0.6-1/fANCOVA/R/fANOVA_all.R |only fANCOVA-0.6-1/fANCOVA/R/zzz.R |only fANCOVA-0.6-1/fANCOVA/man/T.L2.Rd | 8 ++--- fANCOVA-0.6-1/fANCOVA/man/T.aov.Rd | 12 ++++---- fANCOVA-0.6-1/fANCOVA/man/T.var.Rd | 10 +++--- fANCOVA-0.6-1/fANCOVA/man/USpopu.Rd | 2 - fANCOVA-0.6-1/fANCOVA/man/plot.fANCOVA.Rd | 4 +- 14 files changed, 78 insertions(+), 48 deletions(-)
Title: Make Dealing with Dates a Little Easier
Description: Functions to work with date-times and time-spans:
fast and user friendly parsing of date-time data, extraction and
updating of components of a date-time (years, months, days, hours,
minutes, and seconds), algebraic manipulation on date-time and
time-span objects. The 'lubridate' package has a consistent and
memorable syntax that makes working with dates easy and fun. Parts of
the 'CCTZ' source code, released under the Apache 2.0 License, are
included in this package. See <https://github.com/google/cctz> for
more details.
Author: Vitalie Spinu [aut, cre],
Garrett Grolemund [aut],
Hadley Wickham [aut],
Ian Lyttle [ctb],
Imanuel Costigan [ctb],
Jason Law [ctb],
Doug Mitarotonda [ctb],
Joseph Larmarange [ctb],
Jonathan Boiser [ctb],
Chel Hee Lee [ctb],
Google Inc. [ctb, cph]
Maintainer: Vitalie Spinu <spinuvit@gmail.com>
Diff between lubridate versions 1.7.9 dated 2020-06-08 and 1.7.9.2 dated 2020-11-13
lubridate-1.7.9.2/lubridate/DESCRIPTION | 18 lubridate-1.7.9.2/lubridate/MD5 | 125 +- lubridate-1.7.9.2/lubridate/NAMESPACE | 4 lubridate-1.7.9.2/lubridate/NEWS.md | 17 lubridate-1.7.9.2/lubridate/R/accessors-week.r | 1 lubridate-1.7.9.2/lubridate/R/accessors-year.r | 6 lubridate-1.7.9.2/lubridate/R/coercion.r | 44 lubridate-1.7.9.2/lubridate/R/intervals.r | 15 lubridate-1.7.9.2/lubridate/R/ops-m+.r | 43 lubridate-1.7.9.2/lubridate/R/package.r | 2 lubridate-1.7.9.2/lubridate/R/parse.r | 11 lubridate-1.7.9.2/lubridate/R/round.r | 2 lubridate-1.7.9.2/lubridate/R/stamp.r | 21 lubridate-1.7.9.2/lubridate/R/zzz.R | 49 lubridate-1.7.9.2/lubridate/README.md | 18 lubridate-1.7.9.2/lubridate/inst/CITATION | 4 lubridate-1.7.9.2/lubridate/inst/doc/lubridate.R | 2 lubridate-1.7.9.2/lubridate/inst/doc/lubridate.Rmd | 8 lubridate-1.7.9.2/lubridate/inst/doc/lubridate.html | 565 +++------ lubridate-1.7.9.2/lubridate/man/interval.Rd | 6 lubridate-1.7.9.2/lubridate/man/lubridate-package.Rd | 5 lubridate-1.7.9.2/lubridate/man/make_datetime.Rd | 2 lubridate-1.7.9.2/lubridate/man/parse_date_time.Rd | 2 lubridate-1.7.9.2/lubridate/man/reexports.Rd | 2 lubridate-1.7.9.2/lubridate/man/rollbackward.Rd |only lubridate-1.7.9.2/lubridate/man/round_date.Rd | 4 lubridate-1.7.9.2/lubridate/man/stamp.Rd | 21 lubridate-1.7.9.2/lubridate/man/week.Rd | 1 lubridate-1.7.9.2/lubridate/man/within-interval.Rd | 2 lubridate-1.7.9.2/lubridate/man/year.Rd | 6 lubridate-1.7.9.2/lubridate/man/ymd.Rd | 6 lubridate-1.7.9.2/lubridate/src/Makevars | 16 lubridate-1.7.9.2/lubridate/src/Makevars.win | 15 lubridate-1.7.9.2/lubridate/src/cctz/civil_time.h |only lubridate-1.7.9.2/lubridate/src/cctz/civil_time_detail.h |only lubridate-1.7.9.2/lubridate/src/cctz/src/time_zone_fixed.cc | 99 - lubridate-1.7.9.2/lubridate/src/cctz/src/time_zone_fixed.h | 10 lubridate-1.7.9.2/lubridate/src/cctz/src/time_zone_if.cc | 5 lubridate-1.7.9.2/lubridate/src/cctz/src/time_zone_if.h | 36 lubridate-1.7.9.2/lubridate/src/cctz/src/time_zone_impl.cc | 70 - lubridate-1.7.9.2/lubridate/src/cctz/src/time_zone_impl.h | 49 lubridate-1.7.9.2/lubridate/src/cctz/src/time_zone_info.cc | 591 +++++----- lubridate-1.7.9.2/lubridate/src/cctz/src/time_zone_info.h | 39 lubridate-1.7.9.2/lubridate/src/cctz/src/time_zone_libc.cc | 316 +++-- lubridate-1.7.9.2/lubridate/src/cctz/src/time_zone_libc.h | 11 lubridate-1.7.9.2/lubridate/src/cctz/src/time_zone_lookup.cc | 104 + lubridate-1.7.9.2/lubridate/src/cctz/src/time_zone_lookup_test.cc | 533 ++++++--- lubridate-1.7.9.2/lubridate/src/cctz/src/time_zone_posix.cc | 12 lubridate-1.7.9.2/lubridate/src/cctz/src/time_zone_posix.h | 42 lubridate-1.7.9.2/lubridate/src/cctz/src/tzfile.h | 26 lubridate-1.7.9.2/lubridate/src/cctz/src/zone_info_source.cc |only lubridate-1.7.9.2/lubridate/src/cctz/time_zone.h |only lubridate-1.7.9.2/lubridate/src/cctz/zone_info_source.h |only lubridate-1.7.9.2/lubridate/src/datetime.c | 4 lubridate-1.7.9.2/lubridate/src/update.cpp | 4 lubridate-1.7.9.2/lubridate/src/utils.c | 4 lubridate-1.7.9.2/lubridate/src/utils.h | 2 lubridate-1.7.9.2/lubridate/tests/testthat/test-intervals.R | 17 lubridate-1.7.9.2/lubridate/tests/testthat/test-parsers.R | 20 lubridate-1.7.9.2/lubridate/tests/testthat/test-periods.R | 4 lubridate-1.7.9.2/lubridate/tests/testthat/test-pretty.R | 4 lubridate-1.7.9.2/lubridate/tests/testthat/test-rollback.R | 23 lubridate-1.7.9.2/lubridate/tests/testthat/test-round.R | 2 lubridate-1.7.9.2/lubridate/vignettes/lubridate.Rmd | 8 lubridate-1.7.9/lubridate/man/rollback.Rd |only lubridate-1.7.9/lubridate/src/cctz/include |only 66 files changed, 1781 insertions(+), 1297 deletions(-)
Title: Analyze Experimental High-Throughput (Omics) Data
Description: The efficient treatment and convenient analysis of experimental high-throughput (omics) data gets facilitated through this collection of diverse functions.
Several functions address advanced object-conversions, like manipulating lists of lists or lists of arrays, reorganizing lists to arrays or into separate vectors, merging of multiple entries, etc.
Another set of functions provides speed-optimized calculation of standard deviation (sd), coefficient of variance (CV) or standard error of the mean (SEM) for data in matrixes or means per line with respect to additional grouping (eg n groups of replicates).
Other functions facilitate dealing with non-redundant information, by indexing unique, adding counters to redundant or eliminating lines with respect redundancy in a given reference-column, etc.
Help is provided to identify very closely matching numeric values to generate (partial) distance matrixes for very big data in a memory efficient manner or to reduce the complexity of large data-sets by combining very close values.
Many times large experimental datasets need some additional filtering, adequate functions are provided.
Batch reading (or writing) of sets of files and combining data to arrays is supported, too.
Convenient data normalization is supported in various different modes, parameter estimation via permutations or boot-strap as well as flexible testing of multiple pair-wise combinations using the framework of 'limma' is provided, too.
Author: Wolfgang Raffelsberger [aut, cre]
Maintainer: Wolfgang Raffelsberger <w.raffelsberger@unistra.fr>
Diff between wrMisc versions 1.4.0 dated 2020-10-15 and 1.4.1 dated 2020-11-13
DESCRIPTION | 6 ++-- MD5 | 20 ++++++------- R/correctToUnique.R | 14 ++++----- R/normalizeThis.R | 27 +++++++++--------- R/readXlsxBatch.R | 12 ++++---- inst/doc/wrMiscVignette1.R | 6 +++- inst/doc/wrMiscVignette1.Rmd | 42 ++++++++++++++++++---------- inst/doc/wrMiscVignette1.html | 63 ++++++++++++++++++++++-------------------- man/correctToUnique.Rd | 2 - man/normalizeThis.Rd | 8 ++--- vignettes/wrMiscVignette1.Rmd | 42 ++++++++++++++++++---------- 11 files changed, 139 insertions(+), 103 deletions(-)
Title: Interactive R Unit Tests
Description: Simplifies regression tests by comparing objects produced by test
code with earlier versions of those same objects. If objects are unchanged
the tests pass, otherwise execution stops with error details. If in
interactive mode, tests can be reviewed through the provided interactive
environment.
Author: Brodie Gaslam [aut, cre]
Maintainer: Brodie Gaslam <brodie.gaslam@yahoo.com>
Diff between unitizer versions 1.4.10 dated 2020-05-12 and 1.4.11 dated 2020-11-13
unitizer-1.4.10/unitizer/inst/expkg/flm0/utzflm_Rcheck/00_pkg_src |only unitizer-1.4.10/unitizer/inst/expkg/flm0/utzflm_Rcheck/00check.log |only unitizer-1.4.10/unitizer/inst/expkg/flm0/utzflm_Rcheck/00install.out |only unitizer-1.4.10/unitizer/inst/expkg/flm0/utzflm_Rcheck/Rdlatex.log |only unitizer-1.4.10/unitizer/inst/expkg/flm0/utzflm_Rcheck/tests/extra |only unitizer-1.4.10/unitizer/inst/expkg/flm0/utzflm_Rcheck/tests/startup.Rs |only unitizer-1.4.10/unitizer/inst/expkg/flm0/utzflm_Rcheck/tests/tests.Rout |only unitizer-1.4.10/unitizer/inst/expkg/flm0/utzflm_Rcheck/tests/unitizer |only unitizer-1.4.10/unitizer/inst/expkg/flm0/utzflm_Rcheck/utzflm-manual.log |only unitizer-1.4.10/unitizer/inst/expkg/flm0/utzflm_Rcheck/utzflm-manual.pdf |only unitizer-1.4.10/unitizer/inst/expkg/flm0/utzflm_Rcheck/utzflm/_Meta |only unitizer-1.4.10/unitizer/inst/expkg/flm0/utzflm_Rcheck/utzflm/_R/utzflm |only unitizer-1.4.10/unitizer/inst/expkg/flm0/utzflm_Rcheck/utzflm/_R/utzflm.rdb |only unitizer-1.4.10/unitizer/inst/expkg/flm0/utzflm_Rcheck/utzflm/_R/utzflm.rdx |only unitizer-1.4.10/unitizer/inst/expkg/flm0/utzflm_Rcheck/utzflm/_help |only unitizer-1.4.10/unitizer/inst/expkg/flm0/utzflm_Rcheck/utzflm/_html |only unitizer-1.4.11/unitizer/DESCRIPTION | 8 unitizer-1.4.11/unitizer/MD5 | 185 ++----- unitizer-1.4.11/unitizer/NEWS.md | 28 + unitizer-1.4.11/unitizer/R/browse.R | 9 unitizer-1.4.11/unitizer/R/browse.struct.R | 6 unitizer-1.4.11/unitizer/R/exec.R | 39 + unitizer-1.4.11/unitizer/R/faux_prompt.R | 2 unitizer-1.4.11/unitizer/R/get.R | 2 unitizer-1.4.11/unitizer/R/item.sub.R | 58 -- unitizer-1.4.11/unitizer/R/ls.R | 4 unitizer-1.4.11/unitizer/R/onload.R | 2 unitizer-1.4.11/unitizer/R/parse.R | 256 +++++----- unitizer-1.4.11/unitizer/R/prompt.R | 17 unitizer-1.4.11/unitizer/R/state.R | 60 +- unitizer-1.4.11/unitizer/R/unitize.R | 52 +- unitizer-1.4.11/unitizer/R/unitizer.add.R | 7 unitizer-1.4.11/unitizer/README.md | 210 ++++---- unitizer-1.4.11/unitizer/build/vignette.rds |binary unitizer-1.4.11/unitizer/inst/doc/rmdhunks |only unitizer-1.4.11/unitizer/inst/doc/styles.css |only unitizer-1.4.11/unitizer/inst/doc/u1_intro.R | 14 unitizer-1.4.11/unitizer/inst/doc/u1_intro.Rmd | 121 +--- unitizer-1.4.11/unitizer/inst/doc/u1_intro.html | 91 +-- unitizer-1.4.11/unitizer/inst/doc/u2_tests.Rmd | 109 +++- unitizer-1.4.11/unitizer/inst/doc/u2_tests.html | 82 ++- unitizer-1.4.11/unitizer/inst/doc/u3_interactive-env.Rmd | 72 +- unitizer-1.4.11/unitizer/inst/doc/u3_interactive-env.html | 51 + unitizer-1.4.11/unitizer/inst/doc/u4_reproducible-tests.Rmd | 123 ++-- unitizer-1.4.11/unitizer/inst/doc/u4_reproducible-tests.html | 50 - unitizer-1.4.11/unitizer/inst/doc/u5_miscellaneous.Rmd | 40 - unitizer-1.4.11/unitizer/inst/doc/u5_miscellaneous.html | 26 - unitizer-1.4.11/unitizer/inst/expkg/flm0/utzflm_Rcheck/utzflm/_R/readme.txt |only unitizer-1.4.11/unitizer/man/all.equal.condition.Rd | 1 unitizer-1.4.11/unitizer/man/as.character-unitizerChanges-method.Rd | 4 unitizer-1.4.11/unitizer/man/as.expression-unitizerList-method.Rd | 1 unitizer-1.4.11/unitizer/man/demo.Rd | 2 unitizer-1.4.11/unitizer/man/editCalls.Rd | 4 unitizer-1.4.11/unitizer/man/extract-unitizerItem-method.Rd | 1 unitizer-1.4.11/unitizer/man/extract-unitizerItemTestsErrorsDiffs-method.Rd | 4 unitizer-1.4.11/unitizer/man/healEnvs.Rd | 1 unitizer-1.4.11/unitizer/man/infer_unitizer_location.Rd | 8 unitizer-1.4.11/unitizer/man/length-unitizerChanges-method.Rd | 1 unitizer-1.4.11/unitizer/man/length-unitizerSection-method.Rd | 1 unitizer-1.4.11/unitizer/man/nextItem-unitizerList-method.Rd | 1 unitizer-1.4.11/unitizer/man/options_extra.Rd | 9 unitizer-1.4.11/unitizer/man/show-unitizerChanges-method.Rd | 1 unitizer-1.4.11/unitizer/man/show-unitizerItemTestsErrorsDiff-method.Rd | 1 unitizer-1.4.11/unitizer/man/show-unitizerItemTestsErrorsDiffs-method.Rd | 1 unitizer-1.4.11/unitizer/man/show.conditionList.Rd | 1 unitizer-1.4.11/unitizer/man/testthat_transcribe_file.Rd | 9 unitizer-1.4.11/unitizer/man/testthat_translate_file.Rd | 34 - 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91 files changed, 1538 insertions(+), 1173 deletions(-)
Title: Factorization of Sparse Counts Matrices Through Poisson
Likelihood
Description: Creates a low-rank factorization of a sparse counts matrix by maximizing Poisson likelihood with l1/l2 regularization
with all non-negative latent factors (e.g. for recommender systems or topic modeling) (Cortes, (2018) <arXiv:1811.01908>).
Similar to hierarchical Poisson factorization, but follows an optimization-based approach with regularization instead of a
hierarchical structure, and is fit through gradient-based methods instead of variational inference.
Author: David Cortes [aut, cre, cph], Jean-Sebastien Roy [cph], Stephen Nash [cph]
Maintainer: David Cortes <david.cortes.rivera@gmail.com>
Diff between poismf versions 0.2.5 dated 2020-09-12 and 0.2.6 dated 2020-11-13
DESCRIPTION | 10 +++--- MD5 | 20 ++++++------- R/poismf.R | 82 ++++++++++++++++++++++++++++++++++++++++++------------- configure | 18 ++++++------ configure.ac | 2 - man/factors.Rd | 8 +++-- man/poismf.Rd | 12 ++++++++ src/poismf.c | 23 +++++++++++++-- src/poismf.h | 2 - src/pred.c | 5 +++ src/rwrapper.c | 84 ++++++++++++++++++++++++++++++++++++++++++++++----------- 11 files changed, 198 insertions(+), 68 deletions(-)
Title: Create Validation Tests for Automated Content Analysis
Description: Intended to create standard human-in-the-loop validity tests for typical automated content analysis such as topic modeling and dictionary-based methods. This package offers a standard workflow with functions to prepare, administer and evaluate a human-in-the-loop validity test. This package provides functions for validating topic models using word intrusion and Topic intrusion tests, as described in Chang et al. (2009) <https://papers.nips.cc/paper/3700-reading-tea-leaves-how-humans-interpret-topic-models>. This package also provides functions for generating gold-standard data which are useful for validating dictionary-based methods. The default settings of all generated tests match those suggested in Chang et al. (2009) and Song et al. (2020) <doi:10.1080/10584609.2020.1723752>.
Author: Chung-hong Chan [aut, cre] (<https://orcid.org/0000-0002-6232-7530>),
Marius Sältzer [aut] (<https://orcid.org/0000-0002-8604-4666>)
Maintainer: Chung-hong Chan <chainsawtiney@gmail.com>
Diff between oolong versions 0.3.4 dated 2020-03-21 and 0.3.11 dated 2020-11-13
oolong-0.3.11/oolong/DESCRIPTION | 21 oolong-0.3.11/oolong/MD5 | 59 oolong-0.3.11/oolong/NAMESPACE | 1 oolong-0.3.11/oolong/NEWS.md | 6 oolong-0.3.11/oolong/R/oolong.R | 24 oolong-0.3.11/oolong/R/oolong_btm.R |only oolong-0.3.11/oolong/R/oolong_data_misc.R | 31 oolong-0.3.11/oolong/R/oolong_formats.R |only oolong-0.3.11/oolong/R/oolong_gs.R | 23 oolong-0.3.11/oolong/R/oolong_keyatm.R |only oolong-0.3.11/oolong/R/oolong_stm.R |only oolong-0.3.11/oolong/R/oolong_summary.R | 16 oolong-0.3.11/oolong/R/oolong_summary_tm.R | 2 oolong-0.3.11/oolong/R/oolong_tm.R | 194 +-- oolong-0.3.11/oolong/R/oolong_topicmodels.R |only oolong-0.3.11/oolong/R/oolong_warplda.R |only oolong-0.3.11/oolong/build/vignette.rds |binary oolong-0.3.11/oolong/data/abstracts_btm.rda |only oolong-0.3.11/oolong/data/abstracts_dictionary.rda |only oolong-0.3.11/oolong/data/abstracts_keyatm.rda |only oolong-0.3.11/oolong/inst/CITATION |only oolong-0.3.11/oolong/inst/doc/btm.R |only oolong-0.3.11/oolong/inst/doc/btm.Rmd |only oolong-0.3.11/oolong/inst/doc/btm.html |only oolong-0.3.11/oolong/inst/doc/overview.R | 77 - oolong-0.3.11/oolong/inst/doc/overview.Rmd | 31 oolong-0.3.11/oolong/inst/doc/overview.html | 616 +++++----- oolong-0.3.11/oolong/man/abstracts.Rd | 16 oolong-0.3.11/oolong/man/abstracts_stm.Rd | 16 oolong-0.3.11/oolong/man/afinn.Rd | 4 oolong-0.3.11/oolong/man/create_oolong.Rd | 11 oolong-0.3.11/oolong/man/figures/README-diagnosis-1.png |binary oolong-0.3.11/oolong/man/trump2k.Rd | 4 oolong-0.3.11/oolong/tests/testthat/test-btm.R |only oolong-0.3.11/oolong/tests/testthat/test-generate_test_content.R | 9 oolong-0.3.11/oolong/tests/testthat/test-keyatm.R |only oolong-0.3.11/oolong/vignettes/btm.Rmd |only oolong-0.3.11/oolong/vignettes/overview.Rmd | 31 oolong-0.3.4/oolong/data/datalist |only 39 files changed, 658 insertions(+), 534 deletions(-)
Title: Interface to 'X12-ARIMA'/'X13-ARIMA-SEATS' and Structure for
Batch Processing of Seasonal Adjustment
Description: The 'X13-ARIMA-SEATS' <https://www.census.gov/srd/www/x13as/> methodology and software is a widely used software and developed by the US Census Bureau. It can be accessed from 'R' with this package and 'X13-ARIMA-SEATS' binaries are provided by the 'R' package 'x13binary'.
Author: Alexander Kowarik <alexander.kowarik@statistik.gv.at>, Angelika Meraner
Maintainer: Alexander Kowarik <alexander.kowarik@statistik.gv.at>
Diff between x12 versions 1.9.0 dated 2017-12-05 and 1.9.3 dated 2020-11-13
DESCRIPTION | 8 MD5 | 38 R/class.R | 2 R/env_functions.R | 81 - R/parameter-methods.R | 2 R/readSpc.R | 736 ++++++------- R/readx12Out.R | 1956 ++++++++++++++++++------------------ R/x12work.R | 3 R/zzz.R | 24 README.md | 1 inst/CITATION | 44 man/plotRsdAcf-methods.Rd | 209 +-- man/plotSeasFac-methods.Rd | 229 ++-- man/plotSpec-methods.Rd | 225 ++-- man/prev-methods.Rd | 113 +- man/x12-methods.Rd | 243 ++-- man/x12Parameter-class.Rd | 303 ++--- man/x12work.Rd | 448 ++++---- tests/testthat.R | 5 tests/testthat/test_AirPassengers.R | 1 20 files changed, 2343 insertions(+), 2328 deletions(-)
Title: "Eating the Liver of Data Science"
Description: Provides a collection of helper functions that make various techniques from data science more user-friendly for non-experts. In this way, our aim is to allow non-experts to become familiar with the techniques with only a minimal level of coding knowledge. Indeed, following an ancient Persian idiom, we refer to this as "eating the liver of data science" which could be interpreted as "getting intimately close with data science". Examples of procedures we include are: data partitioning for out-of-sample testing, computing Mean Squared Error (MSE) for quantifying prediction accuracy, and data transformation (z-score and min-max). Besides such helper functions, the package also includes several interesting datasets that are useful for multivariate analysis.
Author: Reza Mohammadi [aut, cre] (<https://orcid.org/0000-0001-9538-0648>),
Kevin Burke [aut]
Maintainer: Reza Mohammadi <a.mohammadi@uva.nl>
Diff between liver versions 1.2 dated 2020-09-25 and 1.3 dated 2020-11-13
DESCRIPTION | 9 ++-- MD5 | 44 ++++++++++++-------- NAMESPACE | 3 - NEWS.md | 12 +++++ R/find.na.R | 2 R/kNN.R | 3 - R/minmax.R | 27 ++++++++---- R/mse.R | 12 ++--- R/zscore.R | 13 +++++- README.md | 2 data/advertising.RData |only data/cereal.RData |only data/house.RData |only data/insurance.RData |only data/marketing.RData |only man/adult.Rd | 8 +-- man/advertising.Rd |only man/bank.Rd | 4 - man/cereal.Rd |only man/churn.Rd | 106 ++++++++++++++++++++++++------------------------- man/churnTel.Rd | 4 - man/classifyRisk.Rd | 2 man/house.Rd |only man/housePrice.Rd | 8 +-- man/insurance.Rd |only man/kNN.Rd | 12 +++-- man/marketing.Rd |only man/mse.Rd | 10 ++-- 28 files changed, 164 insertions(+), 117 deletions(-)
Title: Simulation of Chromosomal Regions Shared by Family Members
Description: Simulation of segments shared identical-by-descent (IBD) by
pedigree members. Using sex specific recombination rates along the human
genome (Halldorsson et al. (2019) <doi:10.1126/science.aau1043>), phased chromosomes
are simulated for all pedigree members. Additional features include calculation
of realised IBD coefficients and plots of IBD segment distributions.
Author: Magnus Dehli Vigeland [aut, cre]
(<https://orcid.org/0000-0002-9134-4962>)
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between ibdsim2 versions 1.2 dated 2020-07-11 and 1.3.0 dated 2020-11-13
DESCRIPTION | 10 MD5 | 64 +- NAMESPACE | 8 NEWS.md | 24 + R/estimateCoeffs.R | 8 R/findPattern.R |only R/genedrop.R | 7 R/haploDraw.R | 14 R/ibdsim.R | 15 R/map_constructors.R |only R/map_utils.R | 510 ++++++---------------- R/meiosis.R | 2 R/plotSegmentDistribution.R | 8 R/profileSimIBD.R | 10 R/sysdata.rda |binary README.md | 123 ++++- build/partial.rdb |binary man/convertPos.Rd |only man/customMap.Rd | 2 man/estimateCoeffs.Rd | 6 man/figures/README-ibdsim2-example-distplot-1.png |binary man/figures/README-ibdsim2-example-ped-1.png |binary man/figures/README-quartet-haplo-1.png |only man/findPattern.Rd |only man/haploDraw.Rd | 14 man/loadMap.Rd | 2 man/maplengths.Rd |only man/profileSimIBD.Rd | 2 man/uniformMap.Rd | 2 tests/testthat/test-ibdsim.R | 1 tests/testthat/test-inbred-founders.R | 1 tests/testthat/test-maps.R | 32 - tests/testthat/test-meisosis.R | 1 tests/testthat/test-plotSegmentDistribution.R | 1 tests/testthat/test-recombine.R | 3 tests/testthat/test-segments.R | 1 36 files changed, 382 insertions(+), 489 deletions(-)
Title: Species Distribution Modeling
Description: Functions for species distribution modeling, that is, predicting the environmental similarity of any site to that of the locations of known occurrences of a species.
Author: Robert J. Hijmans, Steven Phillips, John Leathwick and Jane Elith
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between dismo versions 1.1-4 dated 2017-01-09 and 1.3-2 dated 2020-11-13
dismo-1.1-4/dismo/inst/doc/brt.R |only dismo-1.1-4/dismo/inst/doc/sdm.R |only dismo-1.1-4/dismo/man/convexHull.Rd |only dismo-1.3-2/dismo/DESCRIPTION | 17 dismo-1.3-2/dismo/MD5 | 88 +- dismo-1.3-2/dismo/NAMESPACE | 4 dismo-1.3-2/dismo/R/bioclim.predict.R | 4 dismo-1.3-2/dismo/R/circles.R | 2 dismo-1.3-2/dismo/R/convHull.R | 2 dismo-1.3-2/dismo/R/ecocrop.R | 125 ++- dismo-1.3-2/dismo/R/gbif.R | 5 dismo-1.3-2/dismo/R/gbm.plot.fits.R | 11 dismo-1.3-2/dismo/R/geoDist.predict.R | 2 dismo-1.3-2/dismo/R/geocode.R | 110 +- dismo-1.3-2/dismo/R/gmap.R | 12 dismo-1.3-2/dismo/R/maxent.R | 39 dismo-1.3-2/dismo/R/maxent.predict.R | 83 + dismo-1.3-2/dismo/R/voronoi.R | 5 dismo-1.3-2/dismo/build/vignette.rds |binary dismo-1.3-2/dismo/inst/doc/brt.Rnw | 357 -------- dismo-1.3-2/dismo/inst/doc/brt.pdf |binary dismo-1.3-2/dismo/inst/doc/sdm.Rnw | 1372 --------------------------------- dismo-1.3-2/dismo/inst/doc/sdm.pdf |binary dismo-1.3-2/dismo/inst/java/maxent.jar |only dismo-1.3-2/dismo/java/maxent.jar |only dismo-1.3-2/dismo/java/readme.txt |only dismo-1.3-2/dismo/man/acaule.Rd | 2 dismo-1.3-2/dismo/man/bioclim.Rd | 4 dismo-1.3-2/dismo/man/circleHull.Rd | 2 dismo-1.3-2/dismo/man/circles.Rd | 2 dismo-1.3-2/dismo/man/convHull.Rd |only dismo-1.3-2/dismo/man/domain.Rd | 4 dismo-1.3-2/dismo/man/ecocrop.Rd | 8 dismo-1.3-2/dismo/man/evaluate.Rd | 4 dismo-1.3-2/dismo/man/evaluateROCR.Rd | 3 dismo-1.3-2/dismo/man/gbif.Rd | 8 dismo-1.3-2/dismo/man/geocode.Rd | 4 dismo-1.3-2/dismo/man/gmap.Rd | 54 - dismo-1.3-2/dismo/man/maxent.Rd | 37 dismo-1.3-2/dismo/man/mess.Rd | 2 dismo-1.3-2/dismo/man/plot.Rd | 4 dismo-1.3-2/dismo/man/plotEval.Rd | 4 dismo-1.3-2/dismo/man/randomPoints.Rd | 2 dismo-1.3-2/dismo/man/voronoi.Rd | 2 dismo-1.3-2/dismo/man/voronoiHulll.Rd | 2 dismo-1.3-2/dismo/src/dismo_init.c |only dismo-1.3-2/dismo/src/percRank.c | 2 dismo-1.3-2/dismo/vignettes/brt.Rnw | 357 -------- dismo-1.3-2/dismo/vignettes/sdm.Rnw | 1372 --------------------------------- 49 files changed, 436 insertions(+), 3681 deletions(-)
Title: Automated Data Preparation
Description: Do most of the painful data preparation for a data science project with a minimum amount of code; Take advantages of 'data.table' efficiency and use some algorithmic trick in order to perform data preparation in a time and RAM efficient way.
Author: Emmanuel-Lin Toulemonde [aut, cre]
Maintainer: Emmanuel-Lin Toulemonde <el.toulemonde@protonmail.com>
Diff between dataPreparation versions 0.4.3 dated 2020-02-12 and 1.0.0 dated 2020-11-13
dataPreparation-0.4.3/dataPreparation/R/dataSet.R |only dataPreparation-0.4.3/dataPreparation/R/datesManipulations.R |only dataPreparation-0.4.3/dataPreparation/R/factorManipulation.R |only dataPreparation-0.4.3/dataPreparation/R/fastFunctions.r |only dataPreparation-0.4.3/dataPreparation/R/generateFromCharacter.R |only dataPreparation-0.4.3/dataPreparation/R/generateFromDate.R |only dataPreparation-0.4.3/dataPreparation/R/generateFromFactor.R |only dataPreparation-0.4.3/dataPreparation/R/genericFunctions.R |only dataPreparation-0.4.3/dataPreparation/R/numericsManipulations.R |only dataPreparation-0.4.3/dataPreparation/R/onLoad.R |only dataPreparation-0.4.3/dataPreparation/R/prepareSet.R |only dataPreparation-0.4.3/dataPreparation/R/rowFiltering.R |only dataPreparation-0.4.3/dataPreparation/R/sameShape.R |only dataPreparation-0.4.3/dataPreparation/R/setColAs.R |only dataPreparation-0.4.3/dataPreparation/R/shapeSet.R |only dataPreparation-0.4.3/dataPreparation/R/whichFunctions.R |only dataPreparation-0.4.3/dataPreparation/data/datalist |only dataPreparation-0.4.3/dataPreparation/man/aggregateByKey.Rd |only dataPreparation-0.4.3/dataPreparation/man/dataPrepNews.Rd |only dataPreparation-0.4.3/dataPreparation/man/dateFormatUnifier.Rd |only dataPreparation-0.4.3/dataPreparation/man/fastDiscretization.Rd |only dataPreparation-0.4.3/dataPreparation/man/fastFilterVariables.Rd |only dataPreparation-0.4.3/dataPreparation/man/fastHandleNa.Rd |only dataPreparation-0.4.3/dataPreparation/man/fastIsEqual.Rd |only dataPreparation-0.4.3/dataPreparation/man/fastRound.Rd |only dataPreparation-0.4.3/dataPreparation/man/fastScale.Rd |only dataPreparation-0.4.3/dataPreparation/man/findAndTransformDates.Rd |only dataPreparation-0.4.3/dataPreparation/man/findAndTransformNumerics.Rd |only dataPreparation-0.4.3/dataPreparation/man/generateDateDiffs.Rd |only dataPreparation-0.4.3/dataPreparation/man/generateFactorFromDate.Rd |only dataPreparation-0.4.3/dataPreparation/man/generateFromCharacter.Rd |only dataPreparation-0.4.3/dataPreparation/man/generateFromFactor.Rd |only dataPreparation-0.4.3/dataPreparation/man/identifyDates.Rd |only dataPreparation-0.4.3/dataPreparation/man/prepareSet.Rd |only dataPreparation-0.4.3/dataPreparation/man/sameShape.Rd |only dataPreparation-0.4.3/dataPreparation/man/setAsNumericMatrix.Rd |only dataPreparation-0.4.3/dataPreparation/man/setColAsCharacter.Rd |only dataPreparation-0.4.3/dataPreparation/man/setColAsDate.Rd |only dataPreparation-0.4.3/dataPreparation/man/setColAsFactor.Rd |only dataPreparation-0.4.3/dataPreparation/man/setColAsNumeric.Rd |only dataPreparation-0.4.3/dataPreparation/man/shapeSet.Rd |only dataPreparation-0.4.3/dataPreparation/man/unFactor.Rd |only dataPreparation-0.4.3/dataPreparation/man/whichAreBijection.Rd |only dataPreparation-0.4.3/dataPreparation/man/whichAreConstant.Rd |only dataPreparation-0.4.3/dataPreparation/man/whichAreInDouble.Rd |only dataPreparation-0.4.3/dataPreparation/man/whichAreIncluded.Rd |only dataPreparation-0.4.3/dataPreparation/tests/testthat/test_datesManipulation.R |only dataPreparation-0.4.3/dataPreparation/tests/testthat/test_factorManipulation.R |only dataPreparation-0.4.3/dataPreparation/tests/testthat/test_fastFunctions.R |only dataPreparation-0.4.3/dataPreparation/tests/testthat/test_generateFromCharacter.R |only dataPreparation-0.4.3/dataPreparation/tests/testthat/test_generateFromDate.R |only dataPreparation-0.4.3/dataPreparation/tests/testthat/test_generateFromFactor.R |only dataPreparation-0.4.3/dataPreparation/tests/testthat/test_genericFunctions.R |only dataPreparation-0.4.3/dataPreparation/tests/testthat/test_numericsManipulations.R |only dataPreparation-0.4.3/dataPreparation/tests/testthat/test_onLoad.R |only dataPreparation-0.4.3/dataPreparation/tests/testthat/test_prepareSet.R |only dataPreparation-0.4.3/dataPreparation/tests/testthat/test_rowFiltering.R |only dataPreparation-0.4.3/dataPreparation/tests/testthat/test_sameShape.R |only dataPreparation-0.4.3/dataPreparation/tests/testthat/test_setColAs.R |only dataPreparation-0.4.3/dataPreparation/tests/testthat/test_shapeSet.R |only dataPreparation-0.4.3/dataPreparation/tests/testthat/test_whichFunctions.R |only dataPreparation-1.0.0/dataPreparation/DESCRIPTION | 10 dataPreparation-1.0.0/dataPreparation/LICENSE | 8 dataPreparation-1.0.0/dataPreparation/MD5 | 198 dataPreparation-1.0.0/dataPreparation/NAMESPACE | 113 dataPreparation-1.0.0/dataPreparation/NEWS | 422 dataPreparation-1.0.0/dataPreparation/NEWS.md | 422 dataPreparation-1.0.0/dataPreparation/R/aggregate.R | 376 dataPreparation-1.0.0/dataPreparation/R/data_set.R |only dataPreparation-1.0.0/dataPreparation/R/dates_manipulations.R |only dataPreparation-1.0.0/dataPreparation/R/description.R | 156 dataPreparation-1.0.0/dataPreparation/R/discretization.R | 475 - 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More information about dataPreparation at CRAN
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Title: Probability Computations on Pedigrees
Description: An implementation of the Elston-Stewart algorithm for calculating
pedigree likelihoods given genetic marker data (Elston and Stewart (1971)
<doi:10.1159/000152448>). The standard algorithm is extended to allow inbred
founders. Mutation modelling is supported by the 'pedmut' package. 'pedprobr'
is part of the ped suite, a collection of packages for pedigree analysis in R,
based on 'pedtools' for handling pedigrees and markers.
Author: Magnus Dehli Vigeland [aut, cre]
(<https://orcid.org/0000-0002-9134-4962>)
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between pedprobr versions 0.3 dated 2020-07-05 and 0.4.0 dated 2020-11-13
DESCRIPTION | 8 MD5 | 55 +-- NAMESPACE | 7 NEWS.md | 34 +- R/buildGenolist.R |only R/informative.R | 65 ++- R/likelihood-startdata.R | 507 ++++++------------------------ R/likelihood.R | 282 ++++++++-------- R/likelihood2.R |only R/merlin.R | 145 ++++++-- R/oneMarkerDistribution.R | 31 - R/reduceAlleles.R | 56 ++- R/setMutationModel.R |only R/thetaCorrection.R |only R/twoMarkerDistribution.R | 35 +- R/utils.R | 41 +- build/partial.rdb |binary man/likelihood.Rd | 71 ++-- man/lumpAlleles.Rd |only man/merlin.Rd | 71 +++- man/oneMarkerDistribution.Rd | 4 man/setMutationModel.Rd |only man/twoMarkerDistribution.Rd | 3 tests/testthat/test-X-linked-likelihood.R | 1 tests/testthat/test-inbred-founders.R | 21 + tests/testthat/test-likelihood-linked.R | 27 + tests/testthat/test-likelihood-list.R | 1 tests/testthat/test-likelihood.R | 31 + tests/testthat/test-merlin.R |only tests/testthat/test-mutations.R | 1 tests/testthat/test-oneMarkerDist.R | 1 tests/testthat/test-twoMarkerDist.R | 31 - 32 files changed, 777 insertions(+), 752 deletions(-)
Title: A Modified Sequential Probability Ratio Test (MSPRT)
Description: Given the maximum available sample size (N) for an experiment, and the target levels of Type I
and II error probabilities, this package designs a modified SPRT (MSPRT). For any designed MSPRT
the package can also obtain its operating characteristics and implement the test for a given
sequentially observed data. The MSPRT is defined in a manner very similar to Wald's initial proposal.
The proposed test has shown evidence of reducing the average sample size required to perform
statistical hypothesis tests at specified levels of significance and power. Currently, the package
implements one-sample proportion tests, one and two-sample z tests, and one and two-sample
t tests. A brief user guidance for this package is provided below. One can also refer to the
supplemental information for the same.
Author: Sandipan Pramanik [aut, cre],
Valen E. Johnson [aut],
Anirban Bhattacharya [aut]
Maintainer: Sandipan Pramanik <sandy.pramanik@gmail.com>
Diff between MSPRT versions 2.1 dated 2019-08-19 and 3.0 dated 2020-11-13
MSPRT-2.1/MSPRT/man/LR.oneProp.Rd |only MSPRT-2.1/MSPRT/man/LR.oneT.Rd |only MSPRT-2.1/MSPRT/man/LR.oneZ.Rd |only MSPRT-2.1/MSPRT/man/LR.twoT.Rd |only MSPRT-2.1/MSPRT/man/LR.twoZ.Rd |only MSPRT-2.1/MSPRT/man/OC.MSPRT.Rd |only MSPRT-2.1/MSPRT/man/check.Rd |only MSPRT-2.1/MSPRT/man/compmerge.list.Rd |only MSPRT-2.1/MSPRT/man/effective.N.Rd |only MSPRT-2.1/MSPRT/man/error.summary.Rd |only MSPRT-2.1/MSPRT/man/find.alt.Rd |only MSPRT-2.1/MSPRT/man/find.samplesize.Rd |only MSPRT-2.1/MSPRT/man/find.threshold.oneProp.Rd |only MSPRT-2.1/MSPRT/man/objfunc.oneProp.Rd |only MSPRT-2.1/MSPRT/man/overshoot.oneProp.Rd |only MSPRT-2.1/MSPRT/man/overshoot.oneT.Rd |only MSPRT-2.1/MSPRT/man/overshoot.oneZ.Rd |only MSPRT-2.1/MSPRT/man/overshoot.twoT.Rd |only MSPRT-2.1/MSPRT/man/overshoot.twoZ.Rd |only MSPRT-2.1/MSPRT/man/ovr.repl.oneProp.Rd |only MSPRT-2.1/MSPRT/man/ovr.repl.oneT.Rd |only MSPRT-2.1/MSPRT/man/ovr.repl.oneZ.Rd |only MSPRT-2.1/MSPRT/man/ovr.repl.twoT.Rd |only MSPRT-2.1/MSPRT/man/ovr.repl.twoZ.Rd |only MSPRT-2.1/MSPRT/man/point.umpbt.oneProp.Rd |only MSPRT-2.1/MSPRT/man/type2.error.oneProp.Rd |only MSPRT-2.1/MSPRT/man/type2.error.oneT.Rd |only MSPRT-2.1/MSPRT/man/type2.error.oneZ.Rd |only MSPRT-2.1/MSPRT/man/type2.error.twoT.Rd |only MSPRT-2.1/MSPRT/man/type2.error.twoZ.Rd |only MSPRT-2.1/MSPRT/man/ump.match.oneProp.Rd |only MSPRT-2.1/MSPRT/man/umpbt.oneProp.Rd |only MSPRT-2.1/MSPRT/man/umpbt.oneT.Rd |only MSPRT-2.1/MSPRT/man/umpbt.oneZ.Rd |only MSPRT-2.1/MSPRT/man/umpbt.twoT.Rd |only MSPRT-2.1/MSPRT/man/umpbt.twoZ.Rd |only MSPRT-3.0/MSPRT/DESCRIPTION | 36 MSPRT-3.0/MSPRT/MD5 | 71 MSPRT-3.0/MSPRT/NAMESPACE | 66 MSPRT-3.0/MSPRT/R/MSPRT.R |26550 +++++++++++++++++++------ MSPRT-3.0/MSPRT/build/partial.rdb |binary MSPRT-3.0/MSPRT/man/MSPRT-package.Rd | 8 MSPRT-3.0/MSPRT/man/Nstar.Rd |only MSPRT-3.0/MSPRT/man/OCandASN.MSPRT.Rd |only MSPRT-3.0/MSPRT/man/OCandASN.MSPRT_oneProp.Rd |only MSPRT-3.0/MSPRT/man/OCandASN.MSPRT_oneT.Rd |only MSPRT-3.0/MSPRT/man/OCandASN.MSPRT_oneZ.Rd |only MSPRT-3.0/MSPRT/man/OCandASN.MSPRT_twoT.Rd |only MSPRT-3.0/MSPRT/man/OCandASN.MSPRT_twoZ.Rd |only MSPRT-3.0/MSPRT/man/Type2.fixed_design.Rd |only MSPRT-3.0/MSPRT/man/UMPBT.alt.Rd |only MSPRT-3.0/MSPRT/man/design.MSPRT.Rd | 406 MSPRT-3.0/MSPRT/man/design.MSPRT_oneProp.Rd |only MSPRT-3.0/MSPRT/man/design.MSPRT_oneT.Rd |only MSPRT-3.0/MSPRT/man/design.MSPRT_oneZ.Rd |only MSPRT-3.0/MSPRT/man/design.MSPRT_twoT.Rd |only MSPRT-3.0/MSPRT/man/design.MSPRT_twoZ.Rd |only MSPRT-3.0/MSPRT/man/effectiveN.oneProp.Rd |only MSPRT-3.0/MSPRT/man/fixed_design.alt.Rd |only MSPRT-3.0/MSPRT/man/implement.MSPRT.Rd | 480 MSPRT-3.0/MSPRT/man/implement.MSPRT_oneProp.Rd |only MSPRT-3.0/MSPRT/man/implement.MSPRT_oneT.Rd |only MSPRT-3.0/MSPRT/man/implement.MSPRT_oneZ.Rd |only MSPRT-3.0/MSPRT/man/implement.MSPRT_twoT.Rd |only MSPRT-3.0/MSPRT/man/implement.MSPRT_twoZ.Rd |only 65 files changed, 21305 insertions(+), 6312 deletions(-)
Title: Generalized Fiducial Inference for Normal Linear Mixed Models
Description: Simulation of the generalized fiducial distribution for normal linear mixed models with interval data. Fiducial inference is somehow similar to Bayesian inference, in the sense that it is based on a distribution that represents the uncertainty about the parameters, like the posterior distribution in Bayesian statistics. It does not require a prior distribution, and it yields results close to frequentist results. Reference: Cisewski and Hannig (2012) <doi:10.1214/12-AOS1030>.
Author: Stéphane Laurent [aut, cre],
Jessi Cisewski [aut, ctb] (author of the original Matlab code,
<https://orcid.org/0000-0002-9656-2272>)
Maintainer: Stéphane Laurent <laurent_step@outlook.fr>
Diff between gfilmm versions 1.0.0 dated 2020-11-12 and 1.0.1 dated 2020-11-13
DESCRIPTION | 8 - MD5 | 21 ++-- NEWS.md | 16 ++- R/RcppExports.R | 4 R/gfilmm.R | 22 +--- README.md |only inst/doc/the-gfilmm-package.html | 14 +- man/gfilmm.Rd | 15 --- src/Makevars | 2 src/Makevars.win | 2 src/RcppExports.cpp | 20 ---- src/gfilmm.cpp | 189 +++++++++++---------------------------- 12 files changed, 101 insertions(+), 212 deletions(-)
Title: A User-Friendly Pipeline for Biomarker Discovery in Single-Cell
Transcriptomics
Description: An open, multi-algorithmic pipeline for easy, fast and efficient
analysis of cellular sub-populations and the molecular signatures that
characterize them. The pipeline consists of four successive steps: data
pre-processing, cellular clustering with pseudo-temporal ordering, defining
differential expressed genes and biomarker identification. This package
implements extensions of the work published by Ghannoum et. al. (2019)
<doi:10.1101/700989>.
Author: Salim Ghannoum [aut, cph],
Alvaro Köhn-Luque [aut, ths],
Waldir Leoncio [cre, aut],
Damiano Fantini [ctb]
Maintainer: Waldir Leoncio <w.l.netto@medisin.uio.no>
Diff between DIscBIO versions 1.0.1 dated 2020-10-06 and 1.1.0 dated 2020-11-13
DIscBIO-1.0.1/DIscBIO/R/prepExampleDataset.R |only DIscBIO-1.0.1/DIscBIO/R/reformatSiggenes.R |only DIscBIO-1.0.1/DIscBIO/R/replaceDecimals.R |only DIscBIO-1.0.1/DIscBIO/R/samr-adapted.R |only DIscBIO-1.1.0/DIscBIO/DESCRIPTION | 13 DIscBIO-1.1.0/DIscBIO/MD5 | 59 - DIscBIO-1.1.0/DIscBIO/NAMESPACE | 2 DIscBIO-1.1.0/DIscBIO/R/DIscBIO-classes.R | 4 DIscBIO-1.1.0/DIscBIO/R/DIscBIO-generic-ClustDiffGenes.R | 432 +++++----- DIscBIO-1.1.0/DIscBIO/R/DIscBIO-generic-clusteringOrder.R | 1 DIscBIO-1.1.0/DIscBIO/R/DIscBIO-generic-comptSNE.R | 92 +- DIscBIO-1.1.0/DIscBIO/R/DIscBIO-generic-plotExptSNE.R | 164 +-- DIscBIO-1.1.0/DIscBIO/R/DIscBIO-generic-plotLabelstSNE.R | 98 +- DIscBIO-1.1.0/DIscBIO/R/DIscBIO-generic-plotOrderTsne.R | 122 +- DIscBIO-1.1.0/DIscBIO/R/DIscBIO-generic-plotSilhouette.R | 68 - DIscBIO-1.1.0/DIscBIO/R/DIscBIO-generic-plottSNE.R | 86 - DIscBIO-1.1.0/DIscBIO/R/DIscBIO-generic-pseudoTimeOrdering.R | 72 - DIscBIO-1.1.0/DIscBIO/R/Jaccard.R | 1 DIscBIO-1.1.0/DIscBIO/R/Networking.R | 14 DIscBIO-1.1.0/DIscBIO/R/PPI.R | 7 DIscBIO-1.1.0/DIscBIO/R/internal-functions-samr-adapted.R |only DIscBIO-1.1.0/DIscBIO/R/internal-functions.R | 97 ++ DIscBIO-1.1.0/DIscBIO/man/KmeanOrder.Rd | 5 DIscBIO-1.1.0/DIscBIO/man/check.format.Rd | 2 DIscBIO-1.1.0/DIscBIO/man/foldchange.seq.twoclass.unpaired.Rd | 2 DIscBIO-1.1.0/DIscBIO/man/prepExampleDataset.Rd | 2 DIscBIO-1.1.0/DIscBIO/man/rankcols.Rd | 2 DIscBIO-1.1.0/DIscBIO/man/reformatSiggenes.Rd | 5 DIscBIO-1.1.0/DIscBIO/man/replaceDecimals.Rd | 2 DIscBIO-1.1.0/DIscBIO/man/resa.Rd | 2 DIscBIO-1.1.0/DIscBIO/man/sammy.Rd | 2 DIscBIO-1.1.0/DIscBIO/man/samr.estimate.depth.Rd | 2 DIscBIO-1.1.0/DIscBIO/man/wilcoxon.unpaired.seq.func.Rd | 2 33 files changed, 732 insertions(+), 628 deletions(-)
Title: A 'Shiny' App for Exploration of Text Collections
Description: Facilitates dynamic exploration of text collections through an
intuitive graphical user interface and the power of regular expressions.
The package contains 1) a helper function to convert a data frame to a
'corporaexplorerobject', 2) a 'Shiny' app for fast and flexible exploration
of a 'corporaexplorerobject', and 3) a 'Shiny' app for simple
retrieval/extraction of documents from a 'corporaexplorerobject' in a
reading-friendly format. The package also includes demo apps with which
one can explore Jane Austen's novels and the State of the Union Addresses
(data from the 'janeaustenr' and 'sotu' packages respectively).
Author: Kristian Lundby Gjerde [aut, cre]
Maintainer: Kristian Lundby Gjerde <kristian.gjerde@gmail.com>
Diff between corporaexplorer versions 0.8.2 dated 2020-03-07 and 0.8.3 dated 2020-11-13
corporaexplorer-0.8.2/corporaexplorer/inst/download/tests/search_test.R |only corporaexplorer-0.8.2/corporaexplorer/inst/explorer/tests/corpus_info_test.R |only corporaexplorer-0.8.2/corporaexplorer/inst/explorer/tests/date_test.R |only corporaexplorer-0.8.3/corporaexplorer/DESCRIPTION | 10 +- corporaexplorer-0.8.3/corporaexplorer/MD5 | 38 +++++---- corporaexplorer-0.8.3/corporaexplorer/NEWS.md | 6 + corporaexplorer-0.8.3/corporaexplorer/R/demo_janeausten.R | 2 corporaexplorer-0.8.3/corporaexplorer/README.md | 40 +++------- corporaexplorer-0.8.3/corporaexplorer/data/test_data.rda |binary corporaexplorer-0.8.3/corporaexplorer/inst/download/tests/shinytest |only corporaexplorer-0.8.3/corporaexplorer/inst/download/tests/shinytest.R |only corporaexplorer-0.8.3/corporaexplorer/inst/explorer/global/corpus_plot_functions/colours_to_plot_and_legend.R | 2 corporaexplorer-0.8.3/corporaexplorer/inst/explorer/global/corpus_plot_functions/label_axes.R | 8 +- corporaexplorer-0.8.3/corporaexplorer/inst/explorer/global/function_filter_corpus.R | 2 corporaexplorer-0.8.3/corporaexplorer/inst/explorer/global/function_plot_size.R | 4 - corporaexplorer-0.8.3/corporaexplorer/inst/explorer/global/function_visualise_document.R | 39 +++++---- corporaexplorer-0.8.3/corporaexplorer/inst/explorer/global/functions_info.R | 5 - corporaexplorer-0.8.3/corporaexplorer/inst/explorer/global/functions_main_search_engine.R | 4 - corporaexplorer-0.8.3/corporaexplorer/inst/explorer/server/2_event_search_button/subsetting.R | 6 + corporaexplorer-0.8.3/corporaexplorer/inst/explorer/server/2_event_search_button/update_session_variables.R | 7 + corporaexplorer-0.8.3/corporaexplorer/inst/explorer/tests/shinytest |only corporaexplorer-0.8.3/corporaexplorer/inst/explorer/tests/shinytest.R |only corporaexplorer-0.8.3/corporaexplorer/man/test_data.Rd | 4 - 23 files changed, 98 insertions(+), 79 deletions(-)
More information about corporaexplorer at CRAN
Permanent link
Title: Antares Visualizations
Description: Visualize results generated by Antares, a powerful open source software
developed by RTE to simulate and study electric power systems
(more information about 'Antares' here: <https://github.com/AntaresSimulatorTeam/Antares_Simulator>).
This package provides functions that create interactive charts to help
'Antares' users visually explore the results of their simulations.
Author: Veronique Bachelier [aut, cre],
Jalal-Edine Zawam [aut],
Francois Guillem [aut],
Benoit Thieurmel [aut],
Titouan Robert [aut],
Paul Plessiez [aut],
Baptiste Seguinot [ctb],
RTE [cph]
Maintainer: Veronique Bachelier <veronique.bachelier@rte-france.com>
Diff between antaresViz versions 0.15.2 dated 2020-05-26 and 0.15.3 dated 2020-11-13
DESCRIPTION | 17 - MD5 | 42 +- NEWS.md | 4 R/map.R | 4 R/plot_ts.R | 10 README.md | 3 inst/GraphicalCharter.csv | 2 inst/doc/antaresViz.Rmd | 2 inst/doc/antaresViz.html | 358 +++++++++++++---------- tests/testthat/test-catColorPal.R | 77 ++-- tests/testthat/test-continuousColorPal.R | 130 ++++---- tests/testthat/test-exchangesStack.R | 37 +- tests/testthat/test-getTSData.R | 106 +++--- tests/testthat/test-get_data_for_comp.R | 24 - tests/testthat/test-graphUtils.R | 6 tests/testthat/test-h5Request.R | 4 tests/testthat/test-plotMap.R | 22 - tests/testthat/test-plotThermalGroupCapacities.R | 2 tests/testthat/test-plotXY.R | 2 tests/testthat/test-prodStack.R | 34 +- tests/testthat/test-ts_plot.R | 16 - vignettes/antaresViz.Rmd | 2 22 files changed, 476 insertions(+), 428 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-04 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-11-11 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-07-29 0.0.2
2020-03-24 0.0.1
Title: Download Data from the FAOSTAT Database
Description: Download Data from the FAOSTAT Database of the Food and Agricultural Organization (FAO) of the United Nations.
A list of functions to download statistics from FAOSTAT (database of the FAO <http://www.fao.org/faostat/en/#data>)
and WDI (database of the World Bank <https://data.worldbank.org/>), and to perform some harmonization operations.
Author: Michael C. J. Kao <michael.kao@fao.org>, Markus Gesmann, Filippo Gheri
Maintainer: Paul Rougieux <paul.rougieux@gmail.com>
Diff between FAOSTAT versions 2.1.2 dated 2020-04-06 and 2.2.1 dated 2020-11-13
DESCRIPTION | 11 +-- MD5 | 28 ++++---- NAMESPACE | 1 R/FAOsearch.R | 146 ++++++++++++------------------------------- R/faostat_bulk_download.R | 63 +++++++++++++----- R/getWDI.R | 106 ++++++++++++++++--------------- build/vignette.rds |binary demo/FAOSTATdemo.R | 137 +++++++++------------------------------- inst/doc/FAOSTAT.R | 50 ++++---------- inst/doc/FAOSTAT.Rnw | 93 +++++++++++---------------- inst/doc/FAOSTAT.pdf |binary man/FAOsearch.Rd | 35 ++++++++-- man/download_faostat_bulk.Rd | 54 ++++++++++----- man/getWDI.Rd | 22 ++++-- vignettes/FAOSTAT.Rnw | 93 +++++++++++---------------- 15 files changed, 369 insertions(+), 470 deletions(-)
Title: Data Management and Analysis of Tests
Description: A system for the management, assessment, and psychometric analysis of data from educational and psychological tests.
Author: Gunter Maris, Timo Bechger, Jesse Koops, Ivailo Partchev
Maintainer: Jesse Koops <jesse.koops@cito.nl>
Diff between dexter versions 1.0.8 dated 2020-06-15 and 1.1.1 dated 2020-11-13
dexter-1.0.8/dexter/inst/doc/Dexter.R |only dexter-1.0.8/dexter/inst/doc/Dexter.Rmd |only dexter-1.0.8/dexter/inst/doc/Dexter.html |only dexter-1.0.8/dexter/vignettes/Dexter.Rmd |only dexter-1.1.1/dexter/DESCRIPTION | 10 dexter-1.1.1/dexter/MD5 | 102 ++--- dexter-1.1.1/dexter/NAMESPACE | 1 dexter-1.1.1/dexter/NEWS | 8 dexter-1.1.1/dexter/R/ability.R | 8 dexter-1.1.1/dexter/R/anon.R | 6 dexter-1.1.1/dexter/R/anon_calibration.R | 44 +- dexter-1.1.1/dexter/R/database.R | 3 dexter-1.1.1/dexter/R/dexter.R | 8 dexter-1.1.1/dexter/R/dif.R | 5 dexter-1.1.1/dexter/R/enorm.R | 126 +----- dexter-1.1.1/dexter/R/equating.R | 22 - dexter-1.1.1/dexter/R/interaction_model.R | 15 dexter-1.1.1/dexter/R/misc.R | 20 - dexter-1.1.1/dexter/R/plausible_scores.R | 2 dexter-1.1.1/dexter/R/plausible_values.R | 4 dexter-1.1.1/dexter/R/profile_analysis.R | 193 ++++------ dexter-1.1.1/dexter/R/reparam.R | 22 - dexter-1.1.1/dexter/R/resp_data.R | 17 dexter-1.1.1/dexter/R/standards.R | 5 dexter-1.1.1/dexter/R/suf_stats.R | 66 +++ dexter-1.1.1/dexter/README.md | 14 dexter-1.1.1/dexter/build/vignette.rds |binary dexter-1.1.1/dexter/inst/doc/DIF_vignette.html | 92 ++++ dexter-1.1.1/dexter/inst/doc/Equating.R | 4 dexter-1.1.1/dexter/inst/doc/Equating.Rmd | 4 dexter-1.1.1/dexter/inst/doc/Equating.html | 100 ++++- dexter-1.1.1/dexter/inst/doc/Plausible_Values.R | 2 dexter-1.1.1/dexter/inst/doc/Plausible_Values.Rmd | 2 dexter-1.1.1/dexter/inst/doc/Plausible_Values.html | 104 ++++- dexter-1.1.1/dexter/inst/doc/Profile-plots.html | 37 + dexter-1.1.1/dexter/inst/doc/Test_Individual_differences.html | 102 ++++- dexter-1.1.1/dexter/inst/doc/dexter.R |only dexter-1.1.1/dexter/inst/doc/dexter.Rmd |only dexter-1.1.1/dexter/inst/doc/dexter.html |only dexter-1.1.1/dexter/man/ability.Rd | 10 dexter-1.1.1/dexter/man/add_booklet.Rd | 4 dexter-1.1.1/dexter/man/dexter-package.Rd | 2 dexter-1.1.1/dexter/man/fit_enorm.Rd | 16 dexter-1.1.1/dexter/man/get_resp_data.Rd | 2 dexter-1.1.1/dexter/man/plot.DIF_stats.Rd | 4 dexter-1.1.1/dexter/man/plot.prms.Rd | 2 dexter-1.1.1/dexter/man/probability_to_pass.Rd | 6 dexter-1.1.1/dexter/man/profiles.Rd | 22 - dexter-1.1.1/dexter/man/standards_3dc.Rd | 2 dexter-1.1.1/dexter/man/standards_db.Rd | 2 dexter-1.1.1/dexter/src/data.cpp | 1 dexter-1.1.1/dexter/src/elsym.cpp | 3 dexter-1.1.1/dexter/vignettes/Equating.Rmd | 4 dexter-1.1.1/dexter/vignettes/Plausible_Values.Rmd | 2 dexter-1.1.1/dexter/vignettes/dexter.Rmd |only dexter-1.1.1/dexter/vignettes/dexter.bib | 42 ++ 56 files changed, 880 insertions(+), 392 deletions(-)
Title: Forensic Pedigree Analysis and Relatedness Inference
Description: Forensic applications of pedigree analysis, including likelihood ratios
for relationship testing, general relatedness inference, marker simulation, and
power analysis. General computation of exclusion powers is based on Egeland et
al. (2014) <doi:10.1016/j.fsigen.2013.05.001>. Several functions deal
specifically with family reunion cases, implementing and developing ideas from
Kling et al. (2017) <doi:10.1016/j.fsigen.2017.08.006>. A novelty of 'forrel'
is the ability to model background inbreeding in forensic pedigree computations.
This can have significant impact in applications, as exemplified in Vigeland
and Egeland (2019) <doi:10.1016/j.fsigss.2019.10.175>. 'forrel' is part of the
ped suite, a collection of packages for pedigree analysis. In particular,
'forrel' imports 'pedtools' for creating and manipulating pedigrees and markers,
'pedprobr' for likelihood computations, and 'pedmut' for mutation modelling.
Pedigree data may be created from scratch, or loaded from text files. Data
import from the 'Familias' software (Egeland et al. (2000)
<doi:10.1016/S0379-0738(00)00147-X>) is supported.
Author: Magnus Dehli Vigeland [aut, cre]
(<https://orcid.org/0000-0002-9134-4962>),
Egeland Thore [ctb]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between forrel versions 1.0.1 dated 2020-03-22 and 1.1.0 dated 2020-11-13
DESCRIPTION | 10 - MD5 | 90 ++++++----- NAMESPACE | 12 + NEWS.md | 21 ++ R/IBDestimate.R | 264 ++++++++++++++++++++------------- R/IBDtriangle.R | 175 +++++++-------------- R/LRpower.R | 102 ++++++++---- R/MPPsims.R | 38 +--- R/checkPairwise.R |only R/data.R |only R/exclusionPower.R | 160 ++++++++++++-------- R/familias2ped.R | 2 R/ibdEstim.R |only R/kinshipLR.R | 223 ++++++++++++++++++++------- R/markerSim.R | 131 ++++++++++------ R/missingPersonEP.R | 4 R/missingPersonIP.R | 20 -- R/missingPersonLR.R |only R/missingPersonPlot.R | 103 +++++++----- R/pairwiseSim.R |only R/powerPlot.R | 48 ++++-- R/profileSim.R | 53 +++++- R/readFam.R | 2 R/utils.R | 71 +++++++- README.md | 30 +-- build/partial.rdb |binary data |only man/Familias2ped.Rd | 2 man/IBDestimate.Rd | 75 ++++++--- man/IBDtriangle.Rd | 9 - man/LRpower.Rd | 14 + man/MPPsims.Rd | 30 +-- man/NorwegianFrequencies.Rd |only man/checkPairwise.Rd |only man/exclusionPower.Rd | 15 - man/figures/README-triangle-1.png |binary man/ibdEstim.Rd |only man/kinshipLR.Rd | 86 +++++++--- man/markerSim.Rd | 17 +- man/markerSimParametric.Rd |only man/missingPersonEP.Rd | 4 man/missingPersonLR.Rd |only man/missingPersonPlot.Rd | 43 +++-- man/powerPlot.Rd | 9 - man/profileSim.Rd | 24 ++- man/profileSimParametric.Rd |only man/readFam.Rd | 76 ++++----- man/showInTriangle.Rd | 52 ------ man/simpleSim.Rd | 12 - tests/testthat/test-inbred-founders.R | 2 tests/testthat/test-kinshipLR-merlin.R |only tests/testthat/test-kinshipLR.R |only tests/testthat/test-sims.R | 47 +++-- 53 files changed, 1238 insertions(+), 838 deletions(-)
Title: Bindings to the 'HarfBuzz' and 'Fribidi' Libraries for Text
Shaping
Description: Provides access to the text shaping functionality in the 'HarfBuzz'
library and the bidirectional algorithm in the 'Fribidi' library.
'textshaping' is a low-level utility package mainly for graphic devices that
expands upon the font tool-set provided by the 'systemfonts' package.
Author: Thomas Lin Pedersen [cre, aut]
(<https://orcid.org/0000-0002-5147-4711>),
RStudio [cph]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@rstudio.com>
Diff between textshaping versions 0.2.0 dated 2020-11-12 and 0.2.1 dated 2020-11-13
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 2 ++ src/string_metrics.cpp | 8 ++++++++ 4 files changed, 16 insertions(+), 6 deletions(-)
Title: Spatial Data Analysis
Description: Methods for spatial data analysis, especially raster data. Methods allow for low-level data manipulation as well as high-level global, local, zonal, and focal computation. The predict and interpolate methods facilitate the use of regression type (interpolation, machine learning) models for spatial prediction. Processing of very large files is supported. See the manual and tutorials on <https://rspatial.org/terra/> to get started. The package is very similar to the 'raster' package; but 'terra' is simpler and faster.
Author: Robert J. Hijmans [cre, aut] (<https://orcid.org/0000-0001-5872-2872>),
Roger Bivand [ctb] (<https://orcid.org/0000-0003-2392-6140>),
Karl Forner [ctb],
Jeroen Ooms [ctb] (<https://orcid.org/0000-0002-4035-0289>),
Edzer Pebesma [ctb] (<https://orcid.org/0000-0001-8049-7069>)
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between terra versions 0.8-6 dated 2020-07-31 and 0.9-8 dated 2020-11-13
terra-0.8-6/terra/inst/tests |only terra-0.8-6/terra/man/local.Rd |only terra-0.9-8/terra/DESCRIPTION | 10 terra-0.9-8/terra/MD5 | 203 ++++++------ terra-0.9-8/terra/NAMESPACE | 2 terra-0.9-8/terra/R/Agenerics.R | 15 terra-0.9-8/terra/R/Arith_generics.R |only terra-0.9-8/terra/R/SpatDataSet.R | 34 +- terra-0.9-8/terra/R/aggregate.R | 9 terra-0.9-8/terra/R/animate.R |only terra-0.9-8/terra/R/app.R | 65 +++- terra-0.9-8/terra/R/arith.R | 301 +------------------ terra-0.9-8/terra/R/click.R | 6 terra-0.9-8/terra/R/coerce.R | 2 terra-0.9-8/terra/R/colors.R |only terra-0.9-8/terra/R/extract.R | 7 terra-0.9-8/terra/R/focal.R | 2 terra-0.9-8/terra/R/generics.R | 108 +++++- terra-0.9-8/terra/R/interpolate.R | 2 terra-0.9-8/terra/R/lapp.R | 4 terra-0.9-8/terra/R/match.R |only terra-0.9-8/terra/R/messages.R | 32 +- terra-0.9-8/terra/R/names.R | 4 terra-0.9-8/terra/R/plotRGB.R | 28 + terra-0.9-8/terra/R/plotVector.R | 8 terra-0.9-8/terra/R/plot_legend.R | 17 - terra-0.9-8/terra/R/plot_raster.R | 190 ++++++++---- terra-0.9-8/terra/R/predict.R | 2 terra-0.9-8/terra/R/rast.R | 4 terra-0.9-8/terra/R/replace.R | 17 - terra-0.9-8/terra/R/show.R | 40 ++ terra-0.9-8/terra/R/tapp.R | 2 terra-0.9-8/terra/R/values.R | 7 terra-0.9-8/terra/R/vect.R | 4 terra-0.9-8/terra/R/window.R |only terra-0.9-8/terra/R/zonal.R | 4 terra-0.9-8/terra/R/zzz.R | 3 terra-0.9-8/terra/inst/tinytest |only terra-0.9-8/terra/man/aggregate.Rd | 4 terra-0.9-8/terra/man/align.Rd | 15 terra-0.9-8/terra/man/animate.Rd |only terra-0.9-8/terra/man/app.Rd | 14 terra-0.9-8/terra/man/arith.Rd |only terra-0.9-8/terra/man/c.Rd | 19 + terra-0.9-8/terra/man/classify.Rd | 20 - terra-0.9-8/terra/man/colors.Rd |only terra-0.9-8/terra/man/compareGeom.Rd | 8 terra-0.9-8/terra/man/dimensions.Rd | 1 terra-0.9-8/terra/man/expand.Rd | 2 terra-0.9-8/terra/man/ext.Rd | 2 terra-0.9-8/terra/man/extract.Rd | 1 terra-0.9-8/terra/man/ifelse.Rd | 16 - terra-0.9-8/terra/man/init.Rd | 2 terra-0.9-8/terra/man/interpolate.Rd | 2 terra-0.9-8/terra/man/lapp.Rd | 2 terra-0.9-8/terra/man/mask.Rd | 2 terra-0.9-8/terra/man/match.Rd |only terra-0.9-8/terra/man/math.Rd | 25 + terra-0.9-8/terra/man/plot.Rd | 12 terra-0.9-8/terra/man/plotRGB.Rd | 3 terra-0.9-8/terra/man/project.Rd | 22 + terra-0.9-8/terra/man/quantile.Rd | 4 terra-0.9-8/terra/man/rectify.Rd | 7 terra-0.9-8/terra/man/rotate.Rd | 2 terra-0.9-8/terra/man/sds.Rd | 5 terra-0.9-8/terra/man/shift.Rd | 15 terra-0.9-8/terra/man/summarize-generics.Rd |only terra-0.9-8/terra/man/summary.Rd | 12 terra-0.9-8/terra/man/terra-package.Rd | 23 - terra-0.9-8/terra/man/window.Rd |only terra-0.9-8/terra/src/RcppModule.cpp | 54 ++- terra-0.9-8/terra/src/aggregate.cpp | 5 terra-0.9-8/terra/src/area.cpp | 4 terra-0.9-8/terra/src/arith.cpp | 130 ++++++-- terra-0.9-8/terra/src/categories.cpp | 21 + terra-0.9-8/terra/src/distRaster.cpp | 23 + terra-0.9-8/terra/src/extent.cpp | 34 ++ terra-0.9-8/terra/src/extract.cpp | 35 ++ terra-0.9-8/terra/src/focal.cpp | 6 terra-0.9-8/terra/src/gdal_info.cpp | 2 terra-0.9-8/terra/src/gdalio.cpp | 24 + terra-0.9-8/terra/src/memory.cpp | 18 - terra-0.9-8/terra/src/mosaic.cpp | 6 terra-0.9-8/terra/src/ram.cpp | 12 terra-0.9-8/terra/src/raster_coerce.cpp | 9 terra-0.9-8/terra/src/raster_methods.cpp | 439 +++++++++++++++++----------- terra-0.9-8/terra/src/raster_stats.cpp | 32 +- terra-0.9-8/terra/src/rasterize.cpp | 4 terra-0.9-8/terra/src/read.cpp | 166 ++++++++-- terra-0.9-8/terra/src/read_gdal.cpp | 149 ++++++--- terra-0.9-8/terra/src/read_ogr.cpp | 34 +- terra-0.9-8/terra/src/reclassify.cpp | 12 terra-0.9-8/terra/src/rectify.cpp | 21 + terra-0.9-8/terra/src/sample.cpp | 4 terra-0.9-8/terra/src/sources.cpp | 5 terra-0.9-8/terra/src/spatBase.h | 3 terra-0.9-8/terra/src/spatRaster.cpp | 146 ++++++++- terra-0.9-8/terra/src/spatRaster.h | 56 ++- terra-0.9-8/terra/src/spatRasterMultiple.h | 7 terra-0.9-8/terra/src/spatVector.cpp | 43 ++ terra-0.9-8/terra/src/spatVector.h | 2 terra-0.9-8/terra/src/warp.cpp | 36 +- terra-0.9-8/terra/src/write.cpp | 77 ++++ terra-0.9-8/terra/src/write_gdal.cpp | 63 +++- terra-0.9-8/terra/tests |only 105 files changed, 2060 insertions(+), 994 deletions(-)
Title: Utility Functions for 'MixtComp' Outputs
Description: Mixture Composer <https://github.com/modal-inria/MixtComp> is a project to build mixture models with
heterogeneous data sets and partially missing data management. This package contains graphical, getter and some utility
functions to facilitate the analysis of 'MixtComp' output.
Author: Vincent Kubicki [aut],
Christophe Biernacki [aut],
Quentin Grimonprez [aut],
Matthieu Marbac-Lourdelle [aut],
Étienne Goffinet [ctb],
Serge Iovleff [ctb],
Julien Vandaele [ctb, cre]
Maintainer: Julien Vandaele <julien.vandaele@inria.fr>
Diff between RMixtCompUtilities versions 4.1.3 dated 2020-10-02 and 4.1.4 dated 2020-11-13
DESCRIPTION | 8 ++--- MD5 | 36 ++++++++++++++------------ NAMESPACE | 4 ++ NEWS | 8 +++++ R/MIXTCOMP_formatParameter.R | 43 +++++++++++++++++++++++++------ R/MIXTCOMP_getter.R | 54 +++++++++++++++++++++++++++++++++++++--- R/MIXTCOMP_misc.R | 6 ++-- R/PLOT_histAndLine.R | 2 - R/PLOT_plotUnivariateBoxplots.R | 4 +- man/completeAlgo.Rd |only man/createAlgo.Rd | 4 +- man/formatData.Rd |only man/formatModel.Rd |only man/getBIC.Rd | 1 man/getCompletedData.Rd | 1 man/getEmpiricTik.Rd | 3 +- man/getMixtureDensity.Rd |only man/getParam.Rd | 1 man/getPartition.Rd | 3 +- man/getType.Rd | 1 man/histMisclassif.Rd | 2 - 21 files changed, 139 insertions(+), 42 deletions(-)
More information about RMixtCompUtilities at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-06-15 0.1.4
2011-05-23 0.1.3
2011-04-23 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-20 0.3.0
2019-03-26 0.2.0
2019-02-27 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-11-10 2.2-1
2020-10-30 2.2-0
2020-05-09 2.1-4
2019-07-15 2.1-3
2019-07-08 2.1-2
2019-07-03 2.1-1
2019-04-29 2.0-9
2019-02-15 2.0-8
2019-02-02 2.0-7
2018-08-20 2.0-6
2017-12-19 2.0-5
2017-05-21 2.0-4
2017-03-28 2.0-3
2017-03-16 2.0-2
2016-11-30 2.0-1
2015-02-01 1.2-5
2014-05-12 1.2-3
2013-12-16 1.2-2
2013-08-15 1.2-1
2013-06-02 1.1-9