Title: Cluster Extension for 'mlr3'
Description: Extends the 'mlr3' package with cluster analysis.
Author: Damir Pulatov [cre, aut],
Michel Lang [aut] (<https://orcid.org/0000-0001-9754-0393>)
Maintainer: Damir Pulatov <damirpolat@protonmail.com>
Diff between mlr3cluster versions 0.1.0 dated 2020-10-01 and 0.1.1 dated 2020-11-15
DESCRIPTION | 25 +++-- MD5 | 80 +++++++++++------- NAMESPACE | 8 + NEWS.md | 6 + R/LearnerClust.R | 19 ++++ R/LearnerClustAffinityPropagation.R |only R/LearnerClustAgnes.R | 10 +- R/LearnerClustCMeans.R | 13 +- R/LearnerClustCobweb.R |only R/LearnerClustDBSCAN.R | 7 + R/LearnerClustDiana.R | 10 +- R/LearnerClustEM.R |only R/LearnerClustFanny.R | 7 + R/LearnerClustFarthestFirst.R |only R/LearnerClustFeatureless.R | 7 + R/LearnerClustKKMeans.R |only R/LearnerClustKMeans.R | 13 +- R/LearnerClustMeanShift.R |only R/LearnerClustMiniBatchKMeans.R |only R/LearnerClustPAM.R | 7 + R/LearnerClustSimpleKMeans.R |only R/LearnerClustXMeans.R | 7 + R/helper.R | 8 + R/zzz.R | 8 + README.md | 34 +++++-- man/LearnerClust.Rd | 24 +++++ man/mlr3cluster-package.Rd | 2 man/mlr_learners_clust.FF.Rd |only man/mlr_learners_clust.MiniBatchKMeans.Rd |only man/mlr_learners_clust.SimpleKMeans.Rd |only man/mlr_learners_clust.agnes.Rd | 2 man/mlr_learners_clust.ap.Rd |only man/mlr_learners_clust.cmeans.Rd | 2 man/mlr_learners_clust.cobweb.Rd |only man/mlr_learners_clust.dbscan.Rd | 2 man/mlr_learners_clust.diana.Rd | 2 man/mlr_learners_clust.em.Rd |only man/mlr_learners_clust.fanny.Rd | 2 man/mlr_learners_clust.featureless.Rd | 2 man/mlr_learners_clust.kkmeans.Rd |only man/mlr_learners_clust.kmeans.Rd | 2 man/mlr_learners_clust.meanshift.Rd |only man/mlr_learners_clust.pam.Rd | 2 man/mlr_learners_clust.xmeans.Rd | 2 tests/testthat/test_LearnerClust.R | 16 +++ tests/testthat/test_mlr_learners_clust_ap.R |only tests/testthat/test_mlr_learners_clust_cobweb.R |only tests/testthat/test_mlr_learners_clust_em.R |only tests/testthat/test_mlr_learners_clust_ff.R |only tests/testthat/test_mlr_learners_clust_kkmeans.R |only tests/testthat/test_mlr_learners_clust_mbatchkmeans.R |only tests/testthat/test_mlr_learners_clust_meanshift.R |only tests/testthat/test_mlr_learners_clust_simplekmeans.R |only 53 files changed, 245 insertions(+), 84 deletions(-)
Title: Bioacoustic Analysis and Publication Tools
Description: Provides basic tools for manipulating sound files for bioacoustic analysis, and preparing analyses these for publication. The package validates that values are physically possible wherever feasible.
Author: Baker Ed [aut, cre],
Geissman Quentin [ctb]
Maintainer: Baker Ed <ed@ebaker.me.uk>
Diff between sonicscrewdriver versions 0.0.1 dated 2019-11-19 and 0.0.3 dated 2020-11-15
sonicscrewdriver-0.0.1/sonicscrewdriver/README.md |only sonicscrewdriver-0.0.3/sonicscrewdriver/DESCRIPTION | 10 sonicscrewdriver-0.0.3/sonicscrewdriver/MD5 | 104 ++++++---- sonicscrewdriver-0.0.3/sonicscrewdriver/NAMESPACE | 24 ++ sonicscrewdriver-0.0.3/sonicscrewdriver/NEWS.md |only sonicscrewdriver-0.0.3/sonicscrewdriver/R/abAnnotations.R |only sonicscrewdriver-0.0.3/sonicscrewdriver/R/audio_filesize.R |only sonicscrewdriver-0.0.3/sonicscrewdriver/R/convertFileSizes.R |only sonicscrewdriver-0.0.3/sonicscrewdriver/R/convertPressures.R | 36 +++ sonicscrewdriver-0.0.3/sonicscrewdriver/R/convertTemperatures.R | 2 sonicscrewdriver-0.0.3/sonicscrewdriver/R/convertTime.R |only sonicscrewdriver-0.0.3/sonicscrewdriver/R/data2Wave.R | 14 - sonicscrewdriver-0.0.3/sonicscrewdriver/R/dutyCycle.R | 8 sonicscrewdriver-0.0.3/sonicscrewdriver/R/echolocation.R |only sonicscrewdriver-0.0.3/sonicscrewdriver/R/frequency.R | 50 ++++ sonicscrewdriver-0.0.3/sonicscrewdriver/R/googleSpeech.R | 24 +- sonicscrewdriver-0.0.3/sonicscrewdriver/R/indexSpec.R |only sonicscrewdriver-0.0.3/sonicscrewdriver/R/jitter.R |only sonicscrewdriver-0.0.3/sonicscrewdriver/R/parseFilename.R | 2 sonicscrewdriver-0.0.3/sonicscrewdriver/R/rainfallDetection.R | 4 sonicscrewdriver-0.0.3/sonicscrewdriver/R/referenceLevels.R |only sonicscrewdriver-0.0.3/sonicscrewdriver/R/sDuration.R | 2 sonicscrewdriver-0.0.3/sonicscrewdriver/R/shimmer.R |only sonicscrewdriver-0.0.3/sonicscrewdriver/R/soundSpeed.R | 21 ++ sonicscrewdriver-0.0.3/sonicscrewdriver/R/sweptsine.R |only sonicscrewdriver-0.0.3/sonicscrewdriver/R/time.R |only sonicscrewdriver-0.0.3/sonicscrewdriver/R/wavelength.R | 6 sonicscrewdriver-0.0.3/sonicscrewdriver/R/windowing.R | 31 +- sonicscrewdriver-0.0.3/sonicscrewdriver/R/zerocrossing.R |only sonicscrewdriver-0.0.3/sonicscrewdriver/inst |only sonicscrewdriver-0.0.3/sonicscrewdriver/man/P_r.Rd |only sonicscrewdriver-0.0.3/sonicscrewdriver/man/STP.Rd | 4 sonicscrewdriver-0.0.3/sonicscrewdriver/man/ab_annotations.Rd |only sonicscrewdriver-0.0.3/sonicscrewdriver/man/audio_filesize.Rd |only sonicscrewdriver-0.0.3/sonicscrewdriver/man/beatSpectrum.Rd | 3 sonicscrewdriver-0.0.3/sonicscrewdriver/man/convert2Kelvin.Rd | 2 sonicscrewdriver-0.0.3/sonicscrewdriver/man/convert2Pascals.Rd | 5 sonicscrewdriver-0.0.3/sonicscrewdriver/man/convert2bytes.Rd |only sonicscrewdriver-0.0.3/sonicscrewdriver/man/convert2dyne_cm2.Rd |only sonicscrewdriver-0.0.3/sonicscrewdriver/man/convert2seconds.Rd |only sonicscrewdriver-0.0.3/sonicscrewdriver/man/data2Wave.Rd | 12 + sonicscrewdriver-0.0.3/sonicscrewdriver/man/dutyCycle.Rd | 4 sonicscrewdriver-0.0.3/sonicscrewdriver/man/frequencySound.Rd | 4 sonicscrewdriver-0.0.3/sonicscrewdriver/man/frequencyStats.Rd | 3 sonicscrewdriver-0.0.3/sonicscrewdriver/man/generateNoise.Rd | 10 sonicscrewdriver-0.0.3/sonicscrewdriver/man/jitter.Rd |only sonicscrewdriver-0.0.3/sonicscrewdriver/man/naturalFrequency.Rd |only sonicscrewdriver-0.0.3/sonicscrewdriver/man/parseFilename.Rd | 4 sonicscrewdriver-0.0.3/sonicscrewdriver/man/pd_dietrich2004.Rd | 11 - sonicscrewdriver-0.0.3/sonicscrewdriver/man/pd_simple.Rd | 11 - sonicscrewdriver-0.0.3/sonicscrewdriver/man/radar.range.Rd |only sonicscrewdriver-0.0.3/sonicscrewdriver/man/rainfallDetection.Rd | 4 sonicscrewdriver-0.0.3/sonicscrewdriver/man/referenceIntensity.Rd |only sonicscrewdriver-0.0.3/sonicscrewdriver/man/referencePressure.Rd |only sonicscrewdriver-0.0.3/sonicscrewdriver/man/resonantFrequency.Rd |only sonicscrewdriver-0.0.3/sonicscrewdriver/man/sDuration.Rd | 2 sonicscrewdriver-0.0.3/sonicscrewdriver/man/sheepFrequencyStats.Rd | 4 sonicscrewdriver-0.0.3/sonicscrewdriver/man/shimmer.Rd |only sonicscrewdriver-0.0.3/sonicscrewdriver/man/soundSpeed_cramer1993.Rd | 10 sonicscrewdriver-0.0.3/sonicscrewdriver/man/specStats.Rd | 3 sonicscrewdriver-0.0.3/sonicscrewdriver/man/sweptsine.Rd |only sonicscrewdriver-0.0.3/sonicscrewdriver/man/windowing.Rd | 11 - sonicscrewdriver-0.0.3/sonicscrewdriver/man/windowing.functions.Rd |only sonicscrewdriver-0.0.3/sonicscrewdriver/man/zerocross.Rd |only sonicscrewdriver-0.0.3/sonicscrewdriver/tests/testthat/test-data2Wave.R | 8 sonicscrewdriver-0.0.3/sonicscrewdriver/tests/testthat/test-dutyCycle.R |only sonicscrewdriver-0.0.3/sonicscrewdriver/tests/testthat/test-frequency.R |only sonicscrewdriver-0.0.3/sonicscrewdriver/tests/testthat/test-pressureconvert.R | 21 +- sonicscrewdriver-0.0.3/sonicscrewdriver/tests/testthat/test-referenceLevels.R |only sonicscrewdriver-0.0.3/sonicscrewdriver/tests/testthat/test-wavelength.R | 6 70 files changed, 359 insertions(+), 121 deletions(-)
More information about sonicscrewdriver at CRAN
Permanent link
Title: Sites, Population, and Records Cleaning Skills
Description: Data cleaning including 1) generating datasets for time-series and case-crossover analyses based on raw hospital records, 2)linking individuals to a areal map, 3)picking out cases living within a certain distance from a site, etc. For more information, please refer to Zhang W,etc. (2018) <doi: 10.1016/j.envpol.2018.08.030>.
Author: Wangjian Zhang, Bo Ye, Zhicheng Du, Ziqiang Lin, Jijin Yao, Yanan Jin, Wayne R. Lawrence
Maintainer: Wangjian Zhang <wzhang27@albany.edu>
Diff between rSPARCS versions 0.0.9 dated 2020-07-15 and 0.1.0 dated 2020-11-15
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/CXover.data.R | 3 ++- R/FIPS.name.R | 6 ++++-- man/CXover.data.Rd | 5 +++-- 5 files changed, 16 insertions(+), 12 deletions(-)
Title: Interpretive Clustering for Repertory Grids
Description: Shiny UI to identify cliques of related constructs in repertory grid data.
See Burr, King, & Heckmann (2020) <doi:10.1080/14780887.2020.1794088> for a description
of the interpretive clustering (IC) method.
Author: Mark Heckmann [aut, cre, cph] (<https://orcid.org/0000-0002-0736-7417>),
Viv Burr [aut],
Nigel King [aut]
Maintainer: Mark Heckmann <heckmann.mark@gmail.com>
Diff between OpenRepGrid.ic versions 0.3.1 dated 2020-09-07 and 0.4.0 dated 2020-11-15
DESCRIPTION | 10 MD5 | 31 + NAMESPACE | 4 R/02-calculate.R | 568 ++++++++++++++++++++++++++-------- R/03-excel.R | 80 ++++ R/OpenRepGrid.ic.R | 4 R/zzz.R | 2 inst/CITATION | 4 inst/examples/01-process-excel-file.R | 9 inst/extdata/incorrect_formats.xlsx |binary inst/shiny/server.R | 239 ++------------ inst/shiny/ui.R | 95 +++-- man/OpenRepGrid.ic.Rd | 9 man/add_image_border.Rd |only man/check_excel_input_test.Rd |only man/clique_color_pals.Rd |only man/network_graph_images.Rd | 25 + tests/testthat/test-file-format.R | 26 + 18 files changed, 704 insertions(+), 402 deletions(-)
More information about OpenRepGrid.ic at CRAN
Permanent link
Title: Data Package for the 2016 United States Federal Elections
Description: Easily analyze relational data from the United States 2016 federal
election cycle as reported by the Federal Election Commission.
This package contains data about candidates, committees, and a
variety of different financial expenditures. Data is from <https://www.fec.gov/data/browse-data/?tab=bulk-data>.
Author: Marium Tapal [aut, cre] (<https://orcid.org/0000-0001-5093-6462>),
Rana Gahwagy [aut],
Irene Ryan [aut],
Benjamin S. Baumer [aut] (<https://orcid.org/0000-0002-3279-0516>)
Maintainer: Marium Tapal <mariumtapal@gmail.com>
Diff between fec16 versions 0.1.2 dated 2020-10-18 and 0.1.3 dated 2020-11-15
DESCRIPTION | 6 +-- MD5 | 30 ++++++++++------- NEWS.md | 7 ++++ R/data.R | 12 +++++++ R/fec16-package.R | 2 + README.md | 28 ++++++++++++++-- build/vignette.rds |binary data/results_house.rda |binary data/results_senate.rda |binary data/states.rda |only inst/doc/fec_vignette.Rmd | 1 inst/doc/fec_vignette.html | 61 ++++++++++++++++++++++++++++++++---- inst/fec16-dm.jpeg |only inst/fec16-dm_files |only man/fec16.Rd | 2 + man/figures/README-party-plot-1.png |binary man/states.Rd |only vignettes/fec_vignette.Rmd | 1 18 files changed, 124 insertions(+), 26 deletions(-)
Title: Tables, Labels and Some Useful Functions from Spreadsheets and
'SPSS' Statistics
Description: Package computes and displays tables with support for 'SPSS'-style
labels, multiple and nested banners, weights, multiple-response variables
and significance testing. There are facilities for nice output of tables
in 'knitr', 'Shiny', '*.xlsx' files, R and 'Jupyter' notebooks. Methods
for labelled variables add value labels support to base R functions and to
some functions from other packages. Additionally, the package brings
popular data transformation functions from 'SPSS' Statistics and 'Excel':
'RECODE', 'COUNT', 'COMPUTE', 'DO IF', 'COUNTIF', 'VLOOKUP' and etc.
These functions are very useful for data processing in marketing research
surveys. Package intended to help people to move data
processing from 'Excel' and 'SPSS' to R.
Author: Gregory Demin [aut, cre],
Sebastian Jeworutzki [ctb] (<https://orcid.org/0000-0002-2671-5253>)
Maintainer: Gregory Demin <gdemin@gmail.com>
Diff between expss versions 0.10.6 dated 2020-07-26 and 0.10.7 dated 2020-11-15
expss-0.10.6/expss/tests/testthat/test_default_dataset.R |only expss-0.10.6/expss/tests/testthat/test_experimental.R |only expss-0.10.7/expss/DESCRIPTION | 6 expss-0.10.7/expss/MD5 | 216 +-- expss-0.10.7/expss/NAMESPACE | 2 expss-0.10.7/expss/NEWS | 8 expss-0.10.7/expss/R/apply_labels.R | 23 expss-0.10.7/expss/R/criteria_functions.R | 57 expss-0.10.7/expss/R/default_dataset.R | 3 expss-0.10.7/expss/R/recode.R | 4 expss-0.10.7/expss/R/weighted_stats.R | 2 expss-0.10.7/expss/build/vignette.rds |binary expss-0.10.7/expss/inst/doc/examples.html | 668 +++++----- expss-0.10.7/expss/inst/doc/labels-support.html | 54 expss-0.10.7/expss/inst/doc/tables-with-labels.html | 404 +++--- expss-0.10.7/expss/inst/doc/xlsx-export.html | 72 - expss-0.10.7/expss/man/criteria.Rd | 10 expss-0.10.7/expss/tests/testthat/rds/ctable0.rds |binary expss-0.10.7/expss/tests/testthat/rds/ctable1.rds |binary expss-0.10.7/expss/tests/testthat/rds/ctable10.rds |binary expss-0.10.7/expss/tests/testthat/rds/ctable11.rds 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expss-0.10.7/expss/tests/testthat/test_custom_tables.R | 2 expss-0.10.7/expss/tests/testthat/test_do_repeat.R | 52 expss-0.10.7/expss/tests/testthat/test_keep.R | 29 expss-0.10.7/expss/tests/testthat/test_recode_with_labels.R | 25 expss-0.10.7/expss/tests/testthat/test_sheet.R | 7 expss-0.10.7/expss/tests/testthat/test_sort.R | 16 expss-0.10.7/expss/tests/testthat/test_subtotal.R | 5 expss-0.10.7/expss/tests/testthat/test_text_expand.R | 6 expss-0.10.7/expss/tests/testthat/test_vlookup.R | 4 expss-0.10.7/expss/tests/testthat/test_weighted_stats.R | 16 expss-0.10.7/expss/tests/testthat/test_where.R | 15 110 files changed, 970 insertions(+), 1118 deletions(-)
Title: Composable Preprocessing Operators and Pipelines for Machine
Learning
Description: Toolset that enriches 'mlr' with a diverse set of preprocessing
operators. Composable Preprocessing Operators ("CPO"s) are first-class
R objects that can be applied to data.frames and 'mlr' "Task"s to modify
data, can be attached to 'mlr' "Learner"s to add preprocessing to machine
learning algorithms, and can be composed to form preprocessing pipelines.
Author: Martin Binder [aut, cre],
Bernd Bischl [ctb],
Michel Lang [ctb],
Lars Kotthoff [ctb]
Maintainer: Martin Binder <developer.mb706@doublecaret.com>
Diff between mlrCPO versions 0.3.6 dated 2020-04-06 and 0.3.7 dated 2020-11-15
DESCRIPTION | 15 MD5 | 214 ++-- NAMESPACE | 1 NEWS | 6 R/CPO_applyFun.R | 4 R/CPO_dropMostlyConstants.R |only R/CPO_ica.R | 2 R/CPO_pca.R | 4 R/CPO_select.R | 2 R/FormatCheck.R | 17 R/learner.R | 1 R/listCPO.R | 2 R/zzz.R | 2 README.md | 4 build/vignette.rds |binary inst/doc/a_1_getting_started.R | 6 inst/doc/a_1_getting_started.Rmd | 2 inst/doc/a_1_getting_started.html | 1191 +++++++++++++------------ inst/doc/a_2_mlrCPO_core.R | 6 inst/doc/a_2_mlrCPO_core.html | 1357 +++++++++++++++-------------- inst/doc/a_3_all_CPOs.R | 6 inst/doc/a_3_all_CPOs.html | 1301 ++++++++++++++-------------- inst/doc/a_4_custom_CPOs.R | 6 inst/doc/a_4_custom_CPOs.html | 1473 ++++++++++++++++---------------- inst/doc/toc/vignettetoc.Rmd | 6 inst/doc/z_1_getting_started_terse.R | 6 inst/doc/z_1_getting_started_terse.html | 369 ++++---- inst/doc/z_2_mlrCPO_core_terse.R | 6 inst/doc/z_2_mlrCPO_core_terse.html | 449 +++++---- inst/doc/z_3_all_CPOs_terse.R | 6 inst/doc/z_3_all_CPOs_terse.html | 315 ++++-- inst/doc/z_4_custom_CPOs_terse.R | 6 inst/doc/z_4_custom_CPOs_terse.html | 775 +++++++++------- man/NULLCPO.Rd | 4 man/cpoApplyFun.Rd | 1 man/cpoApplyFunRegrTarget.Rd | 1 man/cpoAsNumeric.Rd | 1 man/cpoCache.Rd | 1 man/cpoCbind.Rd | 1 man/cpoCollapseFact.Rd | 1 man/cpoDropConstants.Rd | 1 man/cpoDropMostlyConstants.Rd |only man/cpoDummyEncode.Rd | 1 man/cpoFilterAnova.Rd | 1 man/cpoFilterCarscore.Rd | 1 man/cpoFilterChiSquared.Rd | 1 man/cpoFilterFeatures.Rd | 1 man/cpoFilterGainRatio.Rd | 1 man/cpoFilterInformationGain.Rd | 1 man/cpoFilterKruskal.Rd | 1 man/cpoFilterLinearCorrelation.Rd | 1 man/cpoFilterMrmr.Rd | 1 man/cpoFilterOneR.Rd | 1 man/cpoFilterPermutationImportance.Rd | 1 man/cpoFilterRankCorrelation.Rd | 1 man/cpoFilterRelief.Rd | 1 man/cpoFilterRfCImportance.Rd | 1 man/cpoFilterRfImportance.Rd | 1 man/cpoFilterRfSRCImportance.Rd | 1 man/cpoFilterRfSRCMinDepth.Rd | 1 man/cpoFilterSymmetricalUncertainty.Rd | 1 man/cpoFilterUnivariate.Rd | 1 man/cpoFilterVariance.Rd | 1 man/cpoFixFactors.Rd | 1 man/cpoIca.Rd | 1 man/cpoImpactEncodeClassif.Rd | 1 man/cpoImpactEncodeRegr.Rd | 1 man/cpoImpute.Rd | 1 man/cpoImputeConstant.Rd | 1 man/cpoImputeHist.Rd | 1 man/cpoImputeLearner.Rd | 1 man/cpoImputeMax.Rd | 1 man/cpoImputeMean.Rd | 1 man/cpoImputeMedian.Rd | 1 man/cpoImputeMin.Rd | 1 man/cpoImputeMode.Rd | 1 man/cpoImputeNormal.Rd | 1 man/cpoImputeUniform.Rd | 1 man/cpoLogTrafoRegr.Rd | 1 man/cpoMakeCols.Rd | 1 man/cpoMissingIndicators.Rd | 1 man/cpoModelMatrix.Rd | 1 man/cpoOversample.Rd | 1 man/cpoPca.Rd | 1 man/cpoProbEncode.Rd | 1 man/cpoQuantileBinNumerics.Rd | 1 man/cpoRegrResiduals.Rd | 1 man/cpoResponseFromSE.Rd | 1 man/cpoSample.Rd | 1 man/cpoScale.Rd | 1 man/cpoScaleMaxAbs.Rd | 1 man/cpoScaleRange.Rd | 1 man/cpoSelect.Rd | 1 man/cpoSmote.Rd | 1 man/cpoSpatialSign.Rd | 1 man/cpoTransformParams.Rd | 1 man/cpoWrap.Rd | 1 man/makeCPOCase.Rd | 1 man/makeCPOMultiplex.Rd | 1 tests/run-core.R | 2 tests/run-cpo.R | 2 tests/run-meta.R | 2 tests/run-zzzlint.R | 2 tests/testthat/helper_cpo.R | 11 tests/testthat/test_core_auxiliary.R | 2 tests/testthat/test_core_basic.R | 12 tests/testthat/test_core_targetop.R | 15 vignettes/a_1_getting_started.Rmd | 2 vignettes/toc/vignettetoc.Rmd | 6 109 files changed, 4160 insertions(+), 3524 deletions(-)
Title: The Uniform Manifold Approximation and Projection (UMAP) Method
for Dimensionality Reduction
Description: An implementation of the Uniform Manifold Approximation and
Projection dimensionality reduction by McInnes et al. (2018)
<arXiv:1802.03426>. It also provides means to transform new data and to
carry out supervised dimensionality reduction. An implementation of the
related LargeVis method of Tang et al. (2016) <arXiv:1602.00370> is also
provided. This is a complete re-implementation in R (and C++, via the 'Rcpp'
package): no Python installation is required. See the uwot website
(<https://github.com/jlmelville/uwot>) for more documentation and examples.
Author: James Melville [aut, cre],
Aaron Lun [ctb],
Mohamed Nadhir Djekidel [ctb],
Yuhan Hao [ctb]
Maintainer: James Melville <jlmelville@gmail.com>
Diff between uwot versions 0.1.8 dated 2020-03-16 and 0.1.9 dated 2020-11-15
uwot-0.1.8/uwot/R/progress.R |only uwot-0.1.9/uwot/DESCRIPTION | 16 uwot-0.1.9/uwot/MD5 | 39 uwot-0.1.9/uwot/NEWS.md | 798 +-- uwot-0.1.9/uwot/R/init.R | 868 +-- uwot-0.1.9/uwot/R/neighbors.R | 762 ++- uwot-0.1.9/uwot/R/transform.R | 834 ++- uwot-0.1.9/uwot/R/util.R | 233 - uwot-0.1.9/uwot/R/uwot.R | 5235 +++++++++++------------ uwot-0.1.9/uwot/inst/include/RcppPerpendicular.h | 96 uwot-0.1.9/uwot/man/lvish.Rd | 23 uwot-0.1.9/uwot/man/tumap.Rd | 29 uwot-0.1.9/uwot/man/umap.Rd | 25 uwot-0.1.9/uwot/man/umap_transform.Rd | 44 uwot-0.1.9/uwot/src/Makevars | 2 uwot-0.1.9/uwot/src/nn_parallel.h | 12 uwot-0.1.9/uwot/tests/testthat/helper_data.R | 130 uwot-0.1.9/uwot/tests/testthat/test_errors.R | 97 uwot-0.1.9/uwot/tests/testthat/test_neighbors.R | 450 + uwot-0.1.9/uwot/tests/testthat/test_output.R | 933 ++-- uwot-0.1.9/uwot/tests/testthat/test_transform.R | 247 - 21 files changed, 5738 insertions(+), 5135 deletions(-)
Title: Obtaining a Flat Table from Pivot Tables
Description: Transformations that allow obtaining a flat table from
reports in text or Excel format that contain data in the form of
pivot tables. They can be defined for a single report and applied
to a set of reports.
Author: Jose Samos [aut, cre, cph] (<https://orcid.org/0000-0002-4457-3439>)
Maintainer: Jose Samos <jsamos@ugr.es>
Diff between flattabler versions 1.1.0 dated 2020-08-10 and 1.2.0 dated 2020-11-15
DESCRIPTION | 8 MD5 | 27 +- NEWS.md |only R/read_excel_file.R | 60 ++---- R/read_excel_folder.R | 44 ++-- R/read_excel_sheet.R | 34 +-- build/vignette.rds |binary inst/CITATION | 2 inst/doc/flattabler.html | 312 ++++++++++++++++++-------------- man/read_excel_file.Rd | 18 - man/read_excel_folder.Rd | 26 +- man/read_excel_sheet.Rd | 16 - tests/testthat/test-read_excel_file.R | 13 - tests/testthat/test-read_excel_folder.R | 7 tests/testthat/test-read_excel_sheet.R | 37 +++ 15 files changed, 326 insertions(+), 278 deletions(-)
Title: R Interface to the 'Yacas' Computer Algebra System
Description: Interface to the 'yacas' computer algebra system (<http://www.yacas.org/>).
Author: Mikkel Meyer Andersen [aut, cre, cph],
Rob Goedman [aut, cph],
Gabor Grothendieck [aut, cph],
Søren Højsgaard [aut, cph],
Grzegorz Mazur [aut, cph],
Ayal Pinkus [aut, cph],
Nemanja Trifunovic [cph] (UTF-8 part of yacas
(src/yacas/include/yacas/utf8*))
Maintainer: Mikkel Meyer Andersen <mikl@math.aau.dk>
Diff between Ryacas versions 1.1.3 dated 2020-04-15 and 1.1.3.1 dated 2020-11-15
DESCRIPTION | 8 - MD5 | 26 +-- build/vignette.rds |binary inst/NEWS | 4 inst/doc/arbitrary-precision.html | 138 ++++++++++---------- inst/doc/getting-started.html | 198 ++++++++++++++--------------- inst/doc/high-level.html | 222 ++++++++++++++++----------------- inst/doc/latent-variable-model.html | 66 ++++----- inst/doc/low-level.html | 242 ++++++++++++++++++------------------ inst/doc/ssm-matrix.R | 6 inst/doc/ssm-matrix.Rmd | 6 inst/doc/ssm-matrix.html | 126 +++++++++--------- inst/doc/yacas-rules.html | 24 +-- vignettes/ssm-matrix.Rmd | 6 14 files changed, 546 insertions(+), 526 deletions(-)
Title: A Simpler Way to Find Your Files
Description: Constructs paths to your project's files.
Declare the relative path of a file within your project with 'i_am()'.
Use the 'here()' function as a drop-in replacement for 'file.path()',
it will always locate the files relative to your project root.
Author: Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>),
Jennifer Bryan [ctb] (<https://orcid.org/0000-0002-6983-2759>)
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between here versions 0.1 dated 2017-05-28 and 1.0.0 dated 2020-11-15
DESCRIPTION | 44 ++++++++++++++------- LICENSE |only MD5 | 53 +++++++++++++++++++++++--- NAMESPACE | 1 NEWS.md | 24 +++++++++++ R/aaa.R |only R/dr_here.R |only R/here.R | 113 +++++++++++++------------------------------------------- R/i_am.R |only R/set_here.R |only R/zzz.R |only README.md | 67 ++++++++++++++++++++------------- build |only inst |only man/dr_here.Rd |only man/figures |only man/here.Rd | 60 +++++++++++++---------------- man/i_am.Rd |only man/set_here.Rd |only tests |only vignettes |only 21 files changed, 197 insertions(+), 165 deletions(-)
Title: Bayesian Global Vector Autoregressions
Description: Estimation of Bayesian Global Vector Autoregressions (BGVAR) with different prior setups and the possibility to introduce stochastic volatility. Built-in priors include the Minnesota, the stochastic search variable selection and Normal-Gamma (NG) prior. For a reference see also Crespo Cuaresma, J., Feldkircher, M. and F. Huber (2016) "Forecasting with Global Vector Autoregressive Models: a Bayesian Approach", Journal of Applied Econometrics, Vol. 31(7), pp. 1371-1391 <doi:10.1002/jae.2504>. Post-processing functions allow for doing predictions, structurally identify the model with short-run or sign-restrictions and compute impulse response functions, historical decompositions and forecast error variance decompositions. Plotting functions are also available.
Author: Maximilian Boeck [aut, cre] (<https://orcid.org/0000-0001-6024-8305>),
Martin Feldkircher [aut] (<https://orcid.org/0000-0002-5511-9215>),
Florian Huber [aut] (<https://orcid.org/0000-0002-2896-7921>),
Christopher Sims [ctb]
Maintainer: Maximilian Boeck <maximilian.boeck@wu.ac.at>
Diff between BGVAR versions 2.1.4 dated 2020-11-14 and 2.1.5 dated 2020-11-15
DESCRIPTION | 12 ++++++------ MD5 | 4 ++-- inst/doc/examples.html | 4 ++-- 3 files changed, 10 insertions(+), 10 deletions(-)
Title: Parsing Expression Grammars in Rcpp
Description: A wrapper around the 'Parsing Expression Grammar Template Library', a C++11 library for generating
Parsing Expression Grammars, that makes it accessible within Rcpp. With this, developers can implement
their own grammars and easily expose them in R packages.
Author: Os Keyes [aut, cre], Duncan Garmonsway [ctb], Colin Hirsch [cph], Daniel Frey [cph]
Maintainer: Os Keyes <ironholds@gmail.com>
Diff between piton versions 0.1.1 dated 2017-06-06 and 1.0.0 dated 2020-11-15
piton-0.1.1/piton/inst/include/pegtl/analysis/insert_rules.hpp |only piton-0.1.1/piton/inst/include/pegtl/internal/bump_impl.hpp |only piton-0.1.1/piton/inst/include/pegtl/internal/file_mapper.hpp |only piton-0.1.1/piton/inst/include/pegtl/internal/minus.hpp |only piton-0.1.1/piton/inst/include/pegtl/internal/rule_conjunction.hpp |only piton-0.1.1/piton/src/init.c |only piton-1.0.0/piton/DESCRIPTION | 18 piton-1.0.0/piton/MD5 | 325 +++++----- piton-1.0.0/piton/R/RcppExports.R | 2 piton-1.0.0/piton/README.md | 4 piton-1.0.0/piton/inst/include/pegtl.hpp | 32 piton-1.0.0/piton/inst/include/pegtl/analysis/analyze_cycles.hpp | 25 piton-1.0.0/piton/inst/include/pegtl/analysis/counted.hpp | 16 piton-1.0.0/piton/inst/include/pegtl/analysis/generic.hpp | 18 piton-1.0.0/piton/inst/include/pegtl/analysis/grammar_info.hpp | 10 piton-1.0.0/piton/inst/include/pegtl/analysis/insert_guard.hpp | 26 piton-1.0.0/piton/inst/include/pegtl/analysis/rule_info.hpp | 12 piton-1.0.0/piton/inst/include/pegtl/analysis/rule_type.hpp | 24 piton-1.0.0/piton/inst/include/pegtl/analyze.hpp | 10 piton-1.0.0/piton/inst/include/pegtl/apply_mode.hpp | 18 piton-1.0.0/piton/inst/include/pegtl/argv_input.hpp | 17 piton-1.0.0/piton/inst/include/pegtl/ascii.hpp | 53 + piton-1.0.0/piton/inst/include/pegtl/buffer_input.hpp | 105 ++- piton-1.0.0/piton/inst/include/pegtl/change_action.hpp |only piton-1.0.0/piton/inst/include/pegtl/change_action_and_state.hpp |only piton-1.0.0/piton/inst/include/pegtl/change_action_and_states.hpp |only piton-1.0.0/piton/inst/include/pegtl/change_control.hpp |only piton-1.0.0/piton/inst/include/pegtl/change_state.hpp |only piton-1.0.0/piton/inst/include/pegtl/change_states.hpp |only piton-1.0.0/piton/inst/include/pegtl/config.hpp | 17 piton-1.0.0/piton/inst/include/pegtl/contrib/abnf.hpp | 32 piton-1.0.0/piton/inst/include/pegtl/contrib/alphabet.hpp | 118 +-- piton-1.0.0/piton/inst/include/pegtl/contrib/changes.hpp | 44 - piton-1.0.0/piton/inst/include/pegtl/contrib/counter.hpp | 20 piton-1.0.0/piton/inst/include/pegtl/contrib/http.hpp | 216 +++++- piton-1.0.0/piton/inst/include/pegtl/contrib/icu |only piton-1.0.0/piton/inst/include/pegtl/contrib/if_then.hpp |only piton-1.0.0/piton/inst/include/pegtl/contrib/integer.hpp |only piton-1.0.0/piton/inst/include/pegtl/contrib/json.hpp | 22 piton-1.0.0/piton/inst/include/pegtl/contrib/json_pointer.hpp |only piton-1.0.0/piton/inst/include/pegtl/contrib/parse_tree.hpp |only piton-1.0.0/piton/inst/include/pegtl/contrib/parse_tree_to_dot.hpp |only piton-1.0.0/piton/inst/include/pegtl/contrib/raw_string.hpp | 232 +++---- piton-1.0.0/piton/inst/include/pegtl/contrib/remove_first_state.hpp |only piton-1.0.0/piton/inst/include/pegtl/contrib/remove_last_states.hpp |only piton-1.0.0/piton/inst/include/pegtl/contrib/rep_one_min_max.hpp |only piton-1.0.0/piton/inst/include/pegtl/contrib/rep_string.hpp |only piton-1.0.0/piton/inst/include/pegtl/contrib/shuffle_states.hpp |only piton-1.0.0/piton/inst/include/pegtl/contrib/to_string.hpp | 10 piton-1.0.0/piton/inst/include/pegtl/contrib/tracer.hpp | 220 +++++- piton-1.0.0/piton/inst/include/pegtl/contrib/unescape.hpp | 82 +- piton-1.0.0/piton/inst/include/pegtl/contrib/uri.hpp | 37 - piton-1.0.0/piton/inst/include/pegtl/cstream_input.hpp | 21 piton-1.0.0/piton/inst/include/pegtl/disable_action.hpp |only piton-1.0.0/piton/inst/include/pegtl/discard_input.hpp |only piton-1.0.0/piton/inst/include/pegtl/discard_input_on_failure.hpp |only piton-1.0.0/piton/inst/include/pegtl/discard_input_on_success.hpp |only piton-1.0.0/piton/inst/include/pegtl/enable_action.hpp |only piton-1.0.0/piton/inst/include/pegtl/eol.hpp | 25 piton-1.0.0/piton/inst/include/pegtl/eol_pair.hpp |only piton-1.0.0/piton/inst/include/pegtl/file_input.hpp | 35 - piton-1.0.0/piton/inst/include/pegtl/input_error.hpp | 32 piton-1.0.0/piton/inst/include/pegtl/internal/action.hpp | 27 piton-1.0.0/piton/inst/include/pegtl/internal/action_input.hpp | 30 piton-1.0.0/piton/inst/include/pegtl/internal/alnum.hpp | 10 piton-1.0.0/piton/inst/include/pegtl/internal/alpha.hpp | 10 piton-1.0.0/piton/inst/include/pegtl/internal/always_false.hpp |only piton-1.0.0/piton/inst/include/pegtl/internal/any.hpp | 26 piton-1.0.0/piton/inst/include/pegtl/internal/apply.hpp | 45 - piton-1.0.0/piton/inst/include/pegtl/internal/apply0.hpp | 47 - piton-1.0.0/piton/inst/include/pegtl/internal/apply0_single.hpp |only piton-1.0.0/piton/inst/include/pegtl/internal/apply_single.hpp |only piton-1.0.0/piton/inst/include/pegtl/internal/at.hpp | 33 - piton-1.0.0/piton/inst/include/pegtl/internal/bof.hpp | 12 piton-1.0.0/piton/inst/include/pegtl/internal/bol.hpp | 12 piton-1.0.0/piton/inst/include/pegtl/internal/bump.hpp |only piton-1.0.0/piton/inst/include/pegtl/internal/bump_help.hpp | 13 piton-1.0.0/piton/inst/include/pegtl/internal/bytes.hpp | 14 piton-1.0.0/piton/inst/include/pegtl/internal/control.hpp | 27 piton-1.0.0/piton/inst/include/pegtl/internal/cr_crlf_eol.hpp | 13 piton-1.0.0/piton/inst/include/pegtl/internal/cr_eol.hpp | 13 piton-1.0.0/piton/inst/include/pegtl/internal/crlf_eol.hpp | 13 piton-1.0.0/piton/inst/include/pegtl/internal/cstream_reader.hpp | 16 piton-1.0.0/piton/inst/include/pegtl/internal/cstring_reader.hpp | 12 piton-1.0.0/piton/inst/include/pegtl/internal/demangle.hpp | 63 + piton-1.0.0/piton/inst/include/pegtl/internal/demangle_cxxabi.hpp | 14 piton-1.0.0/piton/inst/include/pegtl/internal/demangle_nop.hpp | 10 piton-1.0.0/piton/inst/include/pegtl/internal/demangle_sanitise.hpp | 10 piton-1.0.0/piton/inst/include/pegtl/internal/disable.hpp | 27 piton-1.0.0/piton/inst/include/pegtl/internal/discard.hpp | 15 piton-1.0.0/piton/inst/include/pegtl/internal/dusel_mode.hpp | 28 piton-1.0.0/piton/inst/include/pegtl/internal/duseltronik.hpp | 136 +++- piton-1.0.0/piton/inst/include/pegtl/internal/enable.hpp | 27 piton-1.0.0/piton/inst/include/pegtl/internal/endian.hpp |only piton-1.0.0/piton/inst/include/pegtl/internal/endian_gcc.hpp |only piton-1.0.0/piton/inst/include/pegtl/internal/endian_win.hpp |only piton-1.0.0/piton/inst/include/pegtl/internal/eof.hpp | 14 piton-1.0.0/piton/inst/include/pegtl/internal/eol.hpp | 17 piton-1.0.0/piton/inst/include/pegtl/internal/eolf.hpp | 17 piton-1.0.0/piton/inst/include/pegtl/internal/file_mapper_posix.hpp |only piton-1.0.0/piton/inst/include/pegtl/internal/file_mapper_win32.hpp |only piton-1.0.0/piton/inst/include/pegtl/internal/file_opener.hpp | 30 piton-1.0.0/piton/inst/include/pegtl/internal/file_reader.hpp | 75 +- piton-1.0.0/piton/inst/include/pegtl/internal/has_apply.hpp |only piton-1.0.0/piton/inst/include/pegtl/internal/has_apply0.hpp | 33 - piton-1.0.0/piton/inst/include/pegtl/internal/has_match.hpp |only piton-1.0.0/piton/inst/include/pegtl/internal/identifier.hpp | 10 piton-1.0.0/piton/inst/include/pegtl/internal/if_apply.hpp | 66 +- piton-1.0.0/piton/inst/include/pegtl/internal/if_missing.hpp |only piton-1.0.0/piton/inst/include/pegtl/internal/if_must.hpp | 47 + piton-1.0.0/piton/inst/include/pegtl/internal/if_must_else.hpp | 10 piton-1.0.0/piton/inst/include/pegtl/internal/if_then_else.hpp | 20 piton-1.0.0/piton/inst/include/pegtl/internal/input_pair.hpp | 14 piton-1.0.0/piton/inst/include/pegtl/internal/integer_sequence.hpp | 57 - piton-1.0.0/piton/inst/include/pegtl/internal/istream_reader.hpp | 12 piton-1.0.0/piton/inst/include/pegtl/internal/istring.hpp | 18 piton-1.0.0/piton/inst/include/pegtl/internal/iterator.hpp | 33 - piton-1.0.0/piton/inst/include/pegtl/internal/lf_crlf_eol.hpp | 13 piton-1.0.0/piton/inst/include/pegtl/internal/lf_eol.hpp | 13 piton-1.0.0/piton/inst/include/pegtl/internal/list.hpp | 10 piton-1.0.0/piton/inst/include/pegtl/internal/list_must.hpp | 10 piton-1.0.0/piton/inst/include/pegtl/internal/list_tail.hpp | 10 piton-1.0.0/piton/inst/include/pegtl/internal/list_tail_pad.hpp | 10 piton-1.0.0/piton/inst/include/pegtl/internal/marker.hpp | 28 piton-1.0.0/piton/inst/include/pegtl/internal/must.hpp | 35 - piton-1.0.0/piton/inst/include/pegtl/internal/not_at.hpp | 33 - piton-1.0.0/piton/inst/include/pegtl/internal/one.hpp | 38 - piton-1.0.0/piton/inst/include/pegtl/internal/opt.hpp | 32 piton-1.0.0/piton/inst/include/pegtl/internal/pad.hpp | 10 piton-1.0.0/piton/inst/include/pegtl/internal/pad_opt.hpp | 10 piton-1.0.0/piton/inst/include/pegtl/internal/peek_char.hpp | 19 piton-1.0.0/piton/inst/include/pegtl/internal/peek_mask_uint.hpp |only piton-1.0.0/piton/inst/include/pegtl/internal/peek_mask_uint8.hpp |only piton-1.0.0/piton/inst/include/pegtl/internal/peek_uint.hpp |only piton-1.0.0/piton/inst/include/pegtl/internal/peek_uint8.hpp |only piton-1.0.0/piton/inst/include/pegtl/internal/peek_utf16.hpp | 44 - piton-1.0.0/piton/inst/include/pegtl/internal/peek_utf32.hpp | 31 piton-1.0.0/piton/inst/include/pegtl/internal/peek_utf8.hpp | 39 - piton-1.0.0/piton/inst/include/pegtl/internal/pegtl_string.hpp | 95 +- piton-1.0.0/piton/inst/include/pegtl/internal/plus.hpp | 27 piton-1.0.0/piton/inst/include/pegtl/internal/raise.hpp | 32 piton-1.0.0/piton/inst/include/pegtl/internal/range.hpp | 28 piton-1.0.0/piton/inst/include/pegtl/internal/ranges.hpp | 32 piton-1.0.0/piton/inst/include/pegtl/internal/read_uint.hpp |only piton-1.0.0/piton/inst/include/pegtl/internal/rematch.hpp |only piton-1.0.0/piton/inst/include/pegtl/internal/rep.hpp | 35 - piton-1.0.0/piton/inst/include/pegtl/internal/rep_min.hpp | 10 piton-1.0.0/piton/inst/include/pegtl/internal/rep_min_max.hpp | 41 - piton-1.0.0/piton/inst/include/pegtl/internal/rep_opt.hpp | 27 piton-1.0.0/piton/inst/include/pegtl/internal/require.hpp | 14 piton-1.0.0/piton/inst/include/pegtl/internal/result_on_found.hpp | 14 piton-1.0.0/piton/inst/include/pegtl/internal/rules.hpp | 8 piton-1.0.0/piton/inst/include/pegtl/internal/seq.hpp | 37 - piton-1.0.0/piton/inst/include/pegtl/internal/skip_control.hpp | 10 piton-1.0.0/piton/inst/include/pegtl/internal/sor.hpp | 26 piton-1.0.0/piton/inst/include/pegtl/internal/star.hpp | 26 piton-1.0.0/piton/inst/include/pegtl/internal/star_must.hpp | 12 piton-1.0.0/piton/inst/include/pegtl/internal/state.hpp | 47 - piton-1.0.0/piton/inst/include/pegtl/internal/string.hpp | 16 piton-1.0.0/piton/inst/include/pegtl/internal/trivial.hpp | 14 piton-1.0.0/piton/inst/include/pegtl/internal/try_catch_type.hpp | 30 piton-1.0.0/piton/inst/include/pegtl/internal/until.hpp | 43 - piton-1.0.0/piton/inst/include/pegtl/istream_input.hpp | 21 piton-1.0.0/piton/inst/include/pegtl/match.hpp |only piton-1.0.0/piton/inst/include/pegtl/memory_input.hpp | 137 +++- piton-1.0.0/piton/inst/include/pegtl/mmap_input.hpp | 46 + piton-1.0.0/piton/inst/include/pegtl/normal.hpp | 71 +- piton-1.0.0/piton/inst/include/pegtl/nothing.hpp | 15 piton-1.0.0/piton/inst/include/pegtl/parse.hpp | 22 piton-1.0.0/piton/inst/include/pegtl/parse_error.hpp | 16 piton-1.0.0/piton/inst/include/pegtl/position.hpp | 10 piton-1.0.0/piton/inst/include/pegtl/read_input.hpp | 40 + piton-1.0.0/piton/inst/include/pegtl/require_apply.hpp |only piton-1.0.0/piton/inst/include/pegtl/require_apply0.hpp |only piton-1.0.0/piton/inst/include/pegtl/rewind_mode.hpp | 21 piton-1.0.0/piton/inst/include/pegtl/rules.hpp | 20 piton-1.0.0/piton/inst/include/pegtl/string_input.hpp | 41 - piton-1.0.0/piton/inst/include/pegtl/tracking_mode.hpp | 18 piton-1.0.0/piton/inst/include/pegtl/uint16.hpp |only piton-1.0.0/piton/inst/include/pegtl/uint32.hpp |only piton-1.0.0/piton/inst/include/pegtl/uint64.hpp |only piton-1.0.0/piton/inst/include/pegtl/uint8.hpp |only piton-1.0.0/piton/inst/include/pegtl/utf16.hpp | 46 - piton-1.0.0/piton/inst/include/pegtl/utf32.hpp | 46 - piton-1.0.0/piton/inst/include/pegtl/utf8.hpp | 21 piton-1.0.0/piton/inst/include/pegtl/version.hpp | 20 piton-1.0.0/piton/man/piton.Rd | 1 piton-1.0.0/piton/src/RcppExports.cpp | 12 piton-1.0.0/piton/src/peg_test.cpp | 2 189 files changed, 2887 insertions(+), 1802 deletions(-)
Title: Microbial Community Ecology Data Analysis
Description: A series of statistical and plotting approaches in microbial community ecology based on the R6 class. The classes are designed for data preprocessing, taxa abundance plotting, alpha diversity statistics, beta diversity statistics, differential abundance test and indicator taxon analysis, environmental data analysis, null model analysis, network analysis and functional analysis.
Author: Chi Liu [aut, cre],
Minjie Yao [aut],
Xiangzhen Li [aut],
Paul J. McMurdie [ctb],
Yang Cao [ctb],
James Robert White [ctb],
Stilianos Louca [cph],
Nhu H. Nguyen [cph]
Maintainer: Chi Liu <liuchi0426@126.com>
Diff between microeco versions 0.2.1 dated 2020-11-12 and 0.3.0 dated 2020-11-15
microeco-0.2.1/microeco/R/RcppExports.R |only microeco-0.2.1/microeco/inst/extdata/FAPROTAX_1.2.1 |only microeco-0.2.1/microeco/man/clr_matrix.Rd |only microeco-0.2.1/microeco/man/cor2cov.Rd |only microeco-0.2.1/microeco/man/pval.sparccboot.Rd |only microeco-0.2.1/microeco/man/sparcc.Rd |only microeco-0.2.1/microeco/man/sparccboot.Rd |only microeco-0.2.1/microeco/src |only microeco-0.3.0/microeco/DESCRIPTION | 17 - microeco-0.3.0/microeco/MD5 | 45 +- microeco-0.3.0/microeco/NAMESPACE | 7 microeco-0.3.0/microeco/R/import.R | 1 microeco-0.3.0/microeco/R/trans_diff.R | 2 microeco-0.3.0/microeco/R/trans_func.R | 7 microeco-0.3.0/microeco/R/trans_network.R | 79 +++- microeco-0.3.0/microeco/R/trans_nullmodel.R | 34 -- microeco-0.3.0/microeco/R/utility.R | 300 +++--------------- microeco-0.3.0/microeco/data/fungi_func.RData |binary microeco-0.3.0/microeco/data/otu_table_16S.RData |binary microeco-0.3.0/microeco/data/taxonomy_table_16S.RData |binary microeco-0.3.0/microeco/inst/CITATION | 2 microeco-0.3.0/microeco/man/meco2phyloseq.Rd |only microeco-0.3.0/microeco/man/phyloseq2meco.Rd |only microeco-0.3.0/microeco/man/trans_diff.Rd | 2 microeco-0.3.0/microeco/man/trans_func.Rd | 8 microeco-0.3.0/microeco/man/trans_network.Rd | 37 +- microeco-0.3.0/microeco/man/trans_nullmodel.Rd | 15 27 files changed, 207 insertions(+), 349 deletions(-)
Title: Finding Files in Project Subdirectories
Description: Robust, reliable and flexible paths to files below
a project root. The 'root' of a project is defined as a directory that
matches a certain criterion, e.g., it contains a certain regular file.
Author: Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>)
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between rprojroot versions 1.3-2 dated 2018-01-03 and 2.0.2 dated 2020-11-15
rprojroot-1.3-2/rprojroot/R/has-file.R |only rprojroot-1.3-2/rprojroot/R/rrmake.R |only rprojroot-1.3-2/rprojroot/tests/testthat/test-make.R |only rprojroot-1.3-2/rprojroot/tests/testthat/test-thisfile.R |only rprojroot-2.0.2/rprojroot/DESCRIPTION | 41 rprojroot-2.0.2/rprojroot/LICENSE |only rprojroot-2.0.2/rprojroot/MD5 | 79 - rprojroot-2.0.2/rprojroot/NAMESPACE | 12 rprojroot-2.0.2/rprojroot/NEWS.md | 33 rprojroot-2.0.2/rprojroot/R/absolute.R |only rprojroot-2.0.2/rprojroot/R/criterion.R | 128 - rprojroot-2.0.2/rprojroot/R/deprecated.R |only rprojroot-2.0.2/rprojroot/R/file.R | 39 rprojroot-2.0.2/rprojroot/R/path.R |only rprojroot-2.0.2/rprojroot/R/root.R | 374 ++++- rprojroot-2.0.2/rprojroot/R/rprojroot-package.R | 4 rprojroot-2.0.2/rprojroot/R/thisfile.R | 97 + rprojroot-2.0.2/rprojroot/R/utils.R |only rprojroot-2.0.2/rprojroot/README.md |only rprojroot-2.0.2/rprojroot/build/vignette.rds |binary rprojroot-2.0.2/rprojroot/inst/WORDLIST |only rprojroot-2.0.2/rprojroot/inst/doc/rprojroot.R | 69 rprojroot-2.0.2/rprojroot/inst/doc/rprojroot.Rmd | 18 rprojroot-2.0.2/rprojroot/inst/doc/rprojroot.html | 746 +++++++--- rprojroot-2.0.2/rprojroot/man/criteria.Rd | 14 rprojroot-2.0.2/rprojroot/man/deprecated.Rd |only rprojroot-2.0.2/rprojroot/man/figures |only rprojroot-2.0.2/rprojroot/man/find_root.Rd | 9 rprojroot-2.0.2/rprojroot/man/find_root_file.Rd | 27 rprojroot-2.0.2/rprojroot/man/root_criterion.Rd | 80 - rprojroot-2.0.2/rprojroot/man/rprojroot-package.Rd | 17 rprojroot-2.0.2/rprojroot/man/thisfile.Rd | 15 rprojroot-2.0.2/rprojroot/tests/testthat/_snaps |only rprojroot-2.0.2/rprojroot/tests/testthat/hierarchy/DESCRIPTION | 2 rprojroot-2.0.2/rprojroot/tests/testthat/hierarchy/a/b/d |only rprojroot-2.0.2/rprojroot/tests/testthat/package/tests/testthat.R | 1 rprojroot-2.0.2/rprojroot/tests/testthat/package/tests/testthat/test-something.R | 1 rprojroot-2.0.2/rprojroot/tests/testthat/scripts/thisfile-cat.R | 2 rprojroot-2.0.2/rprojroot/tests/testthat/test-absolute.R |only rprojroot-2.0.2/rprojroot/tests/testthat/test-criterion.R | 63 rprojroot-2.0.2/rprojroot/tests/testthat/test-file.R |only rprojroot-2.0.2/rprojroot/tests/testthat/test-path.R |only rprojroot-2.0.2/rprojroot/tests/testthat/test-root.R | 196 +- rprojroot-2.0.2/rprojroot/tests/testthat/test-testthat.R | 7 rprojroot-2.0.2/rprojroot/vignettes/rprojroot.Rmd | 18 45 files changed, 1502 insertions(+), 590 deletions(-)
Title: Functions to Analyze Single System Data
Description: Functions to visually and statistically analyze single system data.
Author: Charles Auerbach [aut, cre],
Wendy Zeitlin [aut]
Maintainer: Charles Auerbach <auerbach@yu.edu>
Diff between SSDforR versions 1.5.19 dated 2020-10-20 and 1.5.20 dated 2020-11-15
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/Gindex.R | 4 ++-- R/Rchartsd.R | 1 + R/plotnum.R | 8 ++++++-- 5 files changed, 17 insertions(+), 12 deletions(-)
Title: Australian Government Bureau of Meteorology ('BOM') Data Client
Description: Provides functions to interface with Australian Government Bureau
of Meteorology ('BOM') data, fetching data and returning a data frame of
precis forecasts, historical and current weather data from stations,
agriculture bulletin data, 'BOM' 0900 or 1500 weather bulletins and
downloading and importing radar and satellite imagery files. Data (c)
Australian Government Bureau of Meteorology Creative Commons (CC)
Attribution 3.0 licence or Public Access Licence (PAL) as appropriate. See
<http://www.bom.gov.au/other/copyright.shtml> for further details.
Author: Adam H. Sparks [aut, cre] (<https://orcid.org/0000-0002-0061-8359>),
Jonathan Carroll [aut] (<https://orcid.org/0000-0002-1404-5264>),
James Goldie [aut] (<https://orcid.org/0000-0002-5024-6207>),
Dean Marchiori [aut],
Paul Melloy [aut] (<https://orcid.org/0000-0003-4253-7167>),
Mark Padgham [aut, rev] (<https://orcid.org/0000-0003-2172-5265>),
Hugh Parsonage [aut] (<https://orcid.org/0000-0003-4055-0835>),
Keith Pembleton [aut] (<https://orcid.org/0000-0002-1896-4516>),
James Balamuta [ctb] (<https://orcid.org/0000-0003-2826-8458>),
Brooke Anderson [rev] (<https://orcid.org/0000-0002-5012-9035>)
Maintainer: Adam H. Sparks <adamhsparks@gmail.com>
Diff between bomrang versions 0.7.1 dated 2020-09-28 and 0.7.2 dated 2020-11-15
DESCRIPTION | 6 MD5 | 10 NEWS.md | 4 build/vignette.rds |binary inst/doc/bomrang.html | 2700 ++++++++++++++++++++++++------------------------- inst/doc/use_case.html | 176 ++- 6 files changed, 1498 insertions(+), 1398 deletions(-)
Title: Multidimensional Queries Enriched with Geographic Data
Description: Multidimensional systems allow complex queries to be
carried out in an easy way. The geographical dimension,
together with the temporal dimension, plays a fundamental
role in multidimensional systems. Through this package, vector
layers can be associated to the attributes of geographic
dimensions, so that the results of multidimensional queries
can be obtained directly as vector layers. The multidimensional
structures on which we can define the queries can be created
from a flat table or imported directly using functions from
this package.
Author: Jose Samos [aut, cre, cph] (<https://orcid.org/0000-0002-4457-3439>)
Maintainer: Jose Samos <jsamos@ugr.es>
Diff between geomultistar versions 1.0.0 dated 2020-09-30 and 1.1.0 dated 2020-11-15
geomultistar-1.0.0/geomultistar/man/filter_geodimension.Rd |only geomultistar-1.0.0/geomultistar/man/specify_geodimension.Rd |only geomultistar-1.1.0/geomultistar/DESCRIPTION | 10 geomultistar-1.1.0/geomultistar/MD5 | 45 - geomultistar-1.1.0/geomultistar/NAMESPACE | 1 geomultistar-1.1.0/geomultistar/NEWS.md | 5 geomultistar-1.1.0/geomultistar/R/dimensional_query_run_geoquery.R | 243 +++-- geomultistar-1.1.0/geomultistar/R/dimensional_query_save.R |only geomultistar-1.1.0/geomultistar/R/geomultistar_define_geoattribute.R | 67 - geomultistar-1.1.0/geomultistar/README.md | 32 geomultistar-1.1.0/geomultistar/build/vignette.rds |binary geomultistar-1.1.0/geomultistar/inst/CITATION | 2 geomultistar-1.1.0/geomultistar/inst/doc/geomultistar.R | 15 geomultistar-1.1.0/geomultistar/inst/doc/geomultistar.Rmd | 39 geomultistar-1.1.0/geomultistar/inst/doc/geomultistar.html | 433 +++++++++- geomultistar-1.1.0/geomultistar/man/add_geodimension_additional_attributes.Rd |only geomultistar-1.1.0/geomultistar/man/define_geoattribute.Rd | 4 geomultistar-1.1.0/geomultistar/man/figures/README-example4-1.png |binary geomultistar-1.1.0/geomultistar/man/get_selected_measure_names.Rd |only geomultistar-1.1.0/geomultistar/man/grapes-greater-than-grapes.Rd | 5 geomultistar-1.1.0/geomultistar/man/run_geoquery.Rd | 16 geomultistar-1.1.0/geomultistar/man/save_as_geopackage.Rd |only geomultistar-1.1.0/geomultistar/man/widen_flat_table.Rd |only geomultistar-1.1.0/geomultistar/tests/testthat/test-define_geoattribute.R | 64 - geomultistar-1.1.0/geomultistar/tests/testthat/test-get_empty_geoinstances.R | 10 geomultistar-1.1.0/geomultistar/tests/testthat/test-run_geoquery.R | 224 +++++ geomultistar-1.1.0/geomultistar/vignettes/geomultistar.Rmd | 39 27 files changed, 994 insertions(+), 260 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-02-26 0.7.4
2014-02-21 0.7.2
2010-07-24 0.5.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-11-01 2.7-3
2020-10-31 2.7-2
Title: Computing Envelope Estimators
Description: Provides a general routine, envMU, which allows estimation of the M envelope of span(U) given root n consistent estimators of M and U. The routine envMU does not presume a model. This package implements response envelopes, partial response envelopes, envelopes in the predictor space, heteroscedastic envelopes, simultaneous envelopes, scaled response envelopes, scaled envelopes in the predictor space, groupwise envelopes, weighted envelopes, envelopes in logistic regression and envelopes in Poisson regression. For each of these model-based routines the package provides inference tools including bootstrap, cross validation, estimation and prediction, hypothesis testing on coefficients are included except for weighted envelopes. Tools for selection of dimension include AIC, BIC and likelihood ratio testing. Background is available at Cook, R. D., Forzani, L. and Su, Z. (2016) <doi:10.1016/j.jmva.2016.05.006>. Optimization is based on a clockwise coordinate descent algorithm.
Author: Minji Lee, Zhihua Su
Maintainer: Minji Lee <mlee9@ufl.edu>
Diff between Renvlp versions 2.8 dated 2020-03-16 and 2.9 dated 2020-11-15
Renvlp-2.8/Renvlp/man/GE.Rd |only Renvlp-2.8/Renvlp/man/contr.Rd |only Renvlp-2.8/Renvlp/man/envMU.Rd |only Renvlp-2.8/Renvlp/man/expan.Rd |only Renvlp-2.8/Renvlp/man/genvMU.Rd |only Renvlp-2.8/Renvlp/man/ginv.Rd |only Renvlp-2.8/Renvlp/man/henvMU.Rd |only Renvlp-2.8/Renvlp/man/logit.envMU.Rd |only Renvlp-2.8/Renvlp/man/pois.envMU.Rd |only Renvlp-2.8/Renvlp/man/senvMU.Rd |only Renvlp-2.8/Renvlp/man/stenvMU.Rd |only Renvlp-2.8/Renvlp/man/sxenvMU.Rd |only Renvlp-2.9/Renvlp/DESCRIPTION | 8 Renvlp-2.9/Renvlp/MD5 | 82 ++--- Renvlp-2.9/Renvlp/NAMESPACE | 67 ++++ Renvlp-2.9/Renvlp/R/henv.R | 450 ++++++++++++++++---------------- Renvlp-2.9/Renvlp/R/henvMU.R | 71 ----- Renvlp-2.9/Renvlp/R/logit.envMU.R | 47 +-- Renvlp-2.9/Renvlp/R/pois.envMU.R | 25 - Renvlp-2.9/Renvlp/man/Renvlp.Rd | 4 Renvlp-2.9/Renvlp/man/boot.env.Rd | 2 Renvlp-2.9/Renvlp/man/boot.senv.Rd | 2 Renvlp-2.9/Renvlp/man/boot.sxenv.Rd | 2 Renvlp-2.9/Renvlp/man/boot.xenv.Rd | 2 Renvlp-2.9/Renvlp/man/cv.env.Rd | 2 Renvlp-2.9/Renvlp/man/cv.senv.Rd | 2 Renvlp-2.9/Renvlp/man/cv.sxenv.Rd | 2 Renvlp-2.9/Renvlp/man/cv.xenv.Rd | 2 Renvlp-2.9/Renvlp/man/env.Rd | 4 Renvlp-2.9/Renvlp/man/genv.Rd | 104 +++---- Renvlp-2.9/Renvlp/man/henv.Rd | 98 +++--- Renvlp-2.9/Renvlp/man/penv.Rd | 2 Renvlp-2.9/Renvlp/man/pred.env.Rd | 2 Renvlp-2.9/Renvlp/man/pred.senv.Rd | 2 Renvlp-2.9/Renvlp/man/pred.sxenv.Rd | 2 Renvlp-2.9/Renvlp/man/pred.xenv.Rd | 2 Renvlp-2.9/Renvlp/man/senv.Rd | 4 Renvlp-2.9/Renvlp/man/sxenv.Rd | 4 Renvlp-2.9/Renvlp/man/testcoef.env.Rd | 4 Renvlp-2.9/Renvlp/man/testcoef.senv.Rd | 4 Renvlp-2.9/Renvlp/man/testcoef.sxenv.Rd | 4 Renvlp-2.9/Renvlp/man/testcoef.xenv.Rd | 4 Renvlp-2.9/Renvlp/man/u.env.Rd | 2 Renvlp-2.9/Renvlp/man/u.senv.Rd | 2 Renvlp-2.9/Renvlp/man/u.sxenv.Rd | 2 Renvlp-2.9/Renvlp/man/u.xenv.Rd | 2 Renvlp-2.9/Renvlp/man/weighted.env.Rd | 4 Renvlp-2.9/Renvlp/man/xenv.Rd | 4 48 files changed, 503 insertions(+), 523 deletions(-)