Title: Generalized Correlations and Various Causal Paths
Description: Since causal paths from data are important for all sciences, the
package provides many sophisticated functions. causeSummBlk()
gives easy-to-interpret causal paths. Let Z denote control variables and compare
two flipped kernel regressions: X=f(Y, Z)+e1 and Y=g(X,Z)+e2. Our criterion Cr1
says that if |e1*Y|>|e2*X| then variation in X is more "exogenous or independent"
than in Y and causal path is X to Y. Criterion Cr2 requires |e2|<|e1|. These
inequalities between many absolute values are quantified by four orders of
stochastic dominance. Our third criterion Cr3 for the causal path X to Y
requires new generalized partial correlations to satisfy |r*(x|y,z)|< |r*(y|x,z)|.
The function parcorBMany() reports generalized partials between the first
variable and all others. The package provides several R functions including
get0outliers() for outlier detection, bigfp() for numerical integration by the
trapezoidal rule, stochdom2() for stochastic dominance, pillar3D() for 3D charts,
canonRho() for generalized canonical correlations, depMeas() measures nonlinear
dependence, and causeSummary(mtx) reports summary of causal paths among matrix columns
is easiest to use. Several functions whose names begin with 'boot' provide bootstrap
statistical inference including a new bootGcRsq() test for "Granger-causality"
allowing nonlinear relations. See Vinod (2019) <doi:10.1080/03610918.2015.1122048>.
Author: Prof. H. D. Vinod, Fordham University, NY.
Maintainer: H. D. Vinod <vinod@fordham.edu>
Diff between generalCorr versions 1.1.5 dated 2019-10-30 and 1.1.6 dated 2020-11-20
DESCRIPTION | 27 ++- MD5 | 246 +++++++++++++++++---------------- NAMESPACE | 11 + NEWS | 5 R/GcRsqX12.R |only R/GcRsqX12c.R |only R/GcRsqYX.R |only R/GcRsqYXc.R |only R/absBstdresC.R | 2 R/absBstdrhserC.R | 2 R/allPairs.R | 2 R/bootGcLC.R |only R/bootGcRsq.R |only R/bootPairs.R | 4 R/bootPairs0.R | 4 R/bootQuantile.R | 4 R/bootSign.R | 4 R/bootSignPcent.R | 4 R/bootSummary.R | 4 R/canonRho.R |only R/causeSummBlk.R | 4 R/causeSummary.R | 4 R/causeSummary0.R | 4 R/depMeas.R | 11 + R/generalCorrInfo.R | 20 +- R/gmcmtx0.R | 2 R/gmcmtxBlk.R | 2 R/gmcmtxZ.R | 2 R/gmcxy_np.R | 2 R/kern2.R |only R/kern2ctrl.R |only R/mag.R | 2 R/mag_ctrl.R | 2 R/parcorBMany.R | 2 R/parcorBijk.R | 2 R/parcorMany.R | 2 R/parcorMtx.R | 4 R/parcorSilent.R | 2 R/parcor_ridg.R | 2 R/probSign.R | 2 R/rstar.R | 2 R/siPairsBlk.R | 2 R/silentMtx.R | 2 R/silentMtx0.R | 4 R/silentPairs.R | 2 R/silentPairs0.R | 2 R/symmze.R |only build/vignette.rds |binary inst/doc/generalCorr-vignette.pdf |binary inst/doc/generalCorr-vignette2.pdf |binary inst/doc/generalCorr-vignette3.pdf |binary man/EuroCrime.Rd | 44 ++--- man/GcRsqX12.Rd |only man/GcRsqX12c.Rd |only man/GcRsqYX.Rd |only man/GcRsqYXc.Rd |only man/NLhat.Rd | 78 +++++----- man/Panel2Lag.Rd | 64 ++++---- man/PanelLag.Rd | 94 ++++++------ man/absBstdres.Rd | 108 +++++++------- man/absBstdresC.Rd | 122 ++++++++-------- man/absBstdrhserC.Rd | 130 ++++++++--------- man/abs_res.Rd | 80 +++++----- man/abs_stdapd.Rd | 88 +++++------ man/abs_stdapdC.Rd | 102 ++++++------- man/abs_stdres.Rd | 102 ++++++------- man/abs_stdresC.Rd | 116 +++++++-------- man/abs_stdrhserC.Rd | 124 ++++++++-------- man/abs_stdrhserr.Rd | 92 ++++++------ man/allPairs.Rd | 164 +++++++++++----------- man/bigfp.Rd | 92 ++++++------ man/bootGcLC.Rd |only man/bootGcRsq.Rd |only man/bootPairs.Rd | 166 +++++++++++----------- man/bootPairs0.Rd | 166 +++++++++++----------- man/bootQuantile.Rd | 152 ++++++++++---------- man/bootSign.Rd | 158 ++++++++++----------- man/bootSignPcent.Rd | 158 ++++++++++----------- man/bootSummary.Rd | 138 +++++++++--------- man/canonRho.Rd |only man/causeSummBlk.Rd | 275 ++++++++++++++++++------------------- man/causeSummary.Rd | 268 ++++++++++++++++++------------------ man/causeSummary0.Rd | 260 +++++++++++++++++----------------- man/cofactor.Rd | 80 +++++----- man/comp_portfo2.Rd | 110 +++++++------- man/depMeas.Rd | 114 +++++++-------- man/generalCorrInfo.Rd | 179 ++++++++++++------------ man/get0outliers.Rd | 86 +++++------ man/getSeq.Rd | 62 ++++---- man/gmcmtx0.Rd | 146 +++++++++---------- man/gmcmtxBlk.Rd | 197 +++++++++++++------------- man/gmcmtxZ.Rd | 96 ++++++------ man/gmcxy_np.Rd | 92 ++++++------ man/heurist.Rd | 82 +++++------ man/kern.Rd | 121 ++++++++-------- man/kern2.Rd |only man/kern2ctrl.Rd |only man/kern_ctrl.Rd | 141 +++++++++--------- man/mag.Rd | 114 +++++++-------- man/mag_ctrl.Rd | 144 +++++++++---------- man/minor.Rd | 70 ++++----- man/naTriplet.Rd | 76 +++++----- man/napair.Rd | 62 ++++---- man/parcorBMany.Rd | 157 ++++++++++----------- man/parcorBijk.Rd | 100 ++++++------- man/parcorMany.Rd | 150 ++++++++++---------- man/parcorMtx.Rd | 150 ++++++++++---------- man/parcorSilent.Rd | 174 +++++++++++------------ man/parcor_ijk.Rd | 92 ++++++------ man/parcor_ijkOLD.Rd | 84 +++++------ man/parcor_linear.Rd | 98 ++++++------- man/parcor_ridg.Rd | 174 +++++++++++------------ man/pcause.Rd | 120 ++++++++-------- man/pillar3D.Rd | 111 +++++++------- man/prelec2.Rd | 74 ++++----- man/probSign.Rd | 152 ++++++++++---------- man/rstar.Rd | 102 ++++++------- man/siPairsBlk.Rd | 232 ++++++++++++++++--------------- man/silentMtx.Rd | 245 ++++++++++++++++---------------- man/silentMtx0.Rd | 245 ++++++++++++++++---------------- man/silentPairs.Rd | 219 ++++++++++++++--------------- man/silentPairs0.Rd | 235 +++++++++++++++---------------- man/some0Pairs.Rd | 214 ++++++++++++++-------------- man/someCPairs.Rd | 229 ++++++++++++++++-------------- man/someCPairs2.Rd | 239 ++++++++++++++++---------------- man/someMagPairs.Rd | 178 +++++++++++------------ man/somePairs.Rd | 146 +++++++++---------- man/somePairs2.Rd | 162 ++++++++++----------- man/sort_matrix.Rd | 52 +++--- man/stdres.Rd | 102 ++++++------- man/stdz_xy.Rd | 70 ++++----- man/stochdom2.Rd | 116 +++++++-------- man/symmze.Rd |only man/wtdpapb.Rd | 128 ++++++++--------- 134 files changed, 5193 insertions(+), 5074 deletions(-)
Title: Elimination-by-Aspects Models
Description: Fitting and testing multi-attribute probabilistic choice
models, especially the Bradley-Terry-Luce (BTL) model (Bradley &
Terry, 1952 <doi:10.1093/biomet/39.3-4.324>; Luce, 1959),
elimination-by-aspects (EBA) models (Tversky, 1972 <doi:10.1037/h0032955>),
and preference tree (Pretree) models (Tversky & Sattath, 1979
<doi:10.1037/0033-295X.86.6.542>).
Author: Florian Wickelmaier [aut, cre]
Maintainer: Florian Wickelmaier <wickelmaier@web.de>
Diff between eba versions 1.9-0 dated 2019-04-02 and 1.10-0 dated 2020-11-20
ChangeLog | 9 +++++++++ DESCRIPTION | 10 +++++----- MD5 | 32 ++++++++++++++++++-------------- R/boot.R | 17 ++++++++++++----- build/partial.rdb |binary data/celebrities.rda |binary data/drugrisk.rda |binary data/envirosound.rda |only data/heaviness.rda |binary data/pork.rda |binary data/schoolsubjects.rda |binary data/tartness.rda |binary data/winetaste.rda |only man/boot.Rd | 12 ++++++------ man/drugrisk.Rd | 12 ++++++------ man/envirosound.Rd |only man/schoolsubjects.Rd | 4 ++-- man/soundquality.Rd | 9 +++++---- man/winetaste.Rd |only 19 files changed, 63 insertions(+), 42 deletions(-)
Title: Create Area-Proportional Venn Diagrams from Biological Lists
Description: Creates an area-proportional Venn diagram of 2 or 3 circles. 'BioVenn' is the only R package that can automatically generate an accurate area-proportional Venn diagram by having only lists of (biological) identifiers as input. Also offers the option to map Entrez and/or Affymetrix IDs to Ensembl IDs. In SVG mode, text and numbers can be dragged and dropped. Based on the BioVenn web interface available at <https://www.biovenn.nl>. Hulsen et al. (2008) <doi:10.1186/1471-2164-9-488>.
Author: Tim Hulsen [aut, cre] (<https://orcid.org/0000-0002-0208-8443>)
Maintainer: Tim Hulsen <thulsen@gmail.com>
Diff between BioVenn versions 1.0.5 dated 2020-11-10 and 1.1.0 dated 2020-11-20
DESCRIPTION | 6 MD5 | 7 R/draw.venn.R | 1510 +++++++++++++++++++++++++------------------------- inst/CITATION |only inst/doc/BioVenn.html | 6 5 files changed, 786 insertions(+), 743 deletions(-)
Title: Statistics of Extremes
Description: Conducts inference in statistical models for extreme values (de Carvalho et al (2012), <doi:10.1080/03610926.2012.709905>; de Carvalho and Davison (2014), <10.1080/01621459.2013.872651>; Einmahl et al (2016), <doi:10.1111/rssb.12099>).
Author: Miguel de Carvalho [aut, cre],
Rodrigo Rubio [aut],
Vianey Palacios [aut],
Alejandro Jara [ctb],
Tim Hanson [ctb]
Maintainer: Miguel de Carvalho <miguel.decarvalho@ed.ac.uk>
Diff between extremis versions 0.90 dated 2018-10-28 and 1.0 dated 2020-11-20
DESCRIPTION | 21 +++++++++++----- MD5 | 19 +++++++++++---- NAMESPACE | 10 +++++-- R/cPTdensity.R |only R/cdensity.R | 35 +++++++++++++++++++++++---- man/cPTdensity.Rd |only man/cdensity.Rd | 59 ++++++++++++++++++++++++++++++++--------------- src/PTudensitybetapmh.f |only src/ToolsCDF.f |only src/ToolsCdflib.f |only src/ToolsDistributions.f |only src/ToolsRandlib.f |only src/ToolsRfun.c |only src/ToolsRnumbers.f |only src/ToolsStat.f |only src/init.c |only 16 files changed, 106 insertions(+), 38 deletions(-)
Title: Functions to Efficiently Access NFL Play by Play Data
Description: A set of functions to access National Football League play-by-play
data from <https://www.nfl.com/>.
Author: Sebastian Carl [aut],
Ben Baldwin [cre, aut],
Lee Sharpe [ctb],
Maksim Horowitz [ctb],
Ron Yurko [ctb],
Samuel Ventura [ctb]
Maintainer: Ben Baldwin <bbaldwin206@gmail.com>
Diff between nflfastR versions 3.1.1 dated 2020-10-22 and 3.2.0 dated 2020-11-20
DESCRIPTION | 6 +- MD5 | 22 +++++----- NEWS.md | 13 ++++++ R/data_documentation.R | 2 R/ep_wp_calculators.R | 6 +- R/helper_add_ep_wp.R | 7 +-- R/helper_add_series_data.R | 7 ++- R/helper_scrape_nfl.R | 82 ++++++++++++++++++++++++++++++++++++++- R/sysdata.rda |binary data/teams_colors_logos.rda |binary man/calculate_win_probability.Rd | 3 - man/teams_colors_logos.Rd | 2 12 files changed, 126 insertions(+), 24 deletions(-)
Title: Designing Multi-Arm Multi-Stage Studies
Description: Designing multi-arm multi-stage studies with (asymptotically) normal endpoints and known variance.
Author: Thomas Jaki <jaki.thomas@gmail.com>, Dominic Magirr <d.magirr@gmail.com>, Philip Pallmann <p.pallmann@lancaster.ac.uk>
Maintainer: Thomas Jaki <jaki.thomas@gmail.com>
Diff between MAMS versions 1.4 dated 2020-11-17 and 1.4.1 dated 2020-11-20
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/mams.R | 6 +++++- inst/NEWS | 5 +++++ 4 files changed, 16 insertions(+), 7 deletions(-)
Title: Analysis of Niche Evolution using Niche and Distribution Models
Description: Description: Tools for constructing niche models and analyzing patterns of niche evolution. Acts as an interface for many popular modeling algorithms, and allows users to conduct Monte Carlo tests to address basic questions in evolutionary ecology and biogeography. Warren, D.L., R.E. Glor, and M. Turelli (2008) <doi:10.1111/j.1558-5646.2008.00482.x> Glor, R.E., and D.L. Warren (2011) <doi:10.1111/j.1558-5646.2010.01177.x> Warren, D.L., R.E. Glor, and M. Turelli (2010) <doi:10.1111/j.1600-0587.2009.06142.x> Cardillo, M., and D.L. Warren (2016) <doi:10.1111/geb.12455> D.L. Warren, L.J. Beaumont, R. Dinnage, and J.B. Baumgartner (2019) <doi:10.1111/ecog.03900>.
Author: Dan Warren [aut, cre] (<https://orcid.org/0000-0002-8747-2451>),
Nick Matzke [ctb],
Marcel Cardillo [ctb],
John Baumgartner [ctb],
Linda Beaumont [ctb],
Nicholas Huron [ctb],
Marianna Simoes [ctb],
Teresa Iglesias [ctb],
Russell Dinnage [aut] (<https://orcid.org/0000-0003-0846-2819>)
Maintainer: Dan Warren <dan.l.warren@gmail.com>
Diff between ENMTools versions 1.0.1 dated 2020-08-28 and 1.0.2 dated 2020-11-20
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NAMESPACE | 1 + NEWS.md | 11 +++++++---- R/visualize.overlap.R | 6 +++--- man/visualize.overlap.Rd | 6 +++--- 6 files changed, 24 insertions(+), 20 deletions(-)
Title: 'd3.js' Utilities for R
Description: Provides a suite of functions to help ease the use of 'd3.js' in R.
These helpers include 'htmltools::htmlDependency' functions, hierarchy
builders, and conversion tools for 'partykit', 'igraph,' 'table',
and 'data.frame' R objects into the 'JSON' that 'd3.js' expects.
Author: Mike Bostock [aut, cph] (d3.js library in htmlwidgets/lib,
http://d3js.org),
Kent Russell [aut, cre, cph] (R interface),
Gregor Aisch [aut, cph] (d3-jetpack creator,
https://github.com/gka/d3-jetpack),
Adam Pearce [aut] (core contributor to d3-jetpack),
Ben Ortiz [ctb]
Maintainer: Kent Russell <kent.russell@timelyportfolio.com>
Diff between d3r versions 0.9.0 dated 2020-05-25 and 0.9.1 dated 2020-11-20
DESCRIPTION | 10 +++++----- MD5 | 38 ++++++++++++++++++++++---------------- NAMESPACE | 3 ++- NEWS.md | 4 ++++ R/dependencies.R | 30 ++++++++++++++++++++++++++++++ R/v8.R | 2 +- README.md | 12 ++++++------ inst/www/d3/v6 |only man/change_to_name.Rd | 38 +++++++++++++++++++------------------- man/d3_dep_jetpack.Rd | 3 ++- man/d3_dep_v3.Rd | 3 ++- man/d3_dep_v4.Rd | 3 ++- man/d3_dep_v5.Rd | 3 ++- man/d3_dep_v6.Rd |only man/d3_json.Rd | 38 +++++++++++++++++++------------------- man/promote_na.Rd | 32 ++++++++++++++++---------------- man/promote_na_one.Rd | 32 ++++++++++++++++---------------- tests/testthat/test_deps.R | 10 ++++++++-- tests/testthat/test_v8.R | 2 +- 19 files changed, 157 insertions(+), 106 deletions(-)
Title: An Interface to the 'AutoNavi Maps' API Geocoding Services
Description: Getting and parsing data of location geocode/reverse-geocode and administrative regions from 'AutoNavi Maps'<https://lbs.amap.com/api/webservice/summary> API.
Author: Han Chen [aut, cre],
Wanyanhan Jiang [ctb]
Maintainer: Han Chen <chenhan28@gmail.com>
Diff between amapGeocode versions 0.4.0 dated 2020-10-17 and 0.5.0 dated 2020-11-20
DESCRIPTION | 8 - MD5 | 43 +++---- NEWS.md | 3 R/convertCoord.R | 24 +++- R/getAdmin.R | 22 ++- R/getCoord.R | 23 +++ R/getLocation.R | 21 ++- R/helpers.R | 25 ++++ README.md | 173 ++++++++++++++++++------------ build/amapGeocode.pdf |binary build/vignette.rds |binary inst/WORDLIST | 3 inst/doc/Introduction_to_amapGeocode.R | 1 inst/doc/Introduction_to_amapGeocode.Rmd | 32 +---- inst/doc/Introduction_to_amapGeocode.html | 132 +++++++++------------- man/convertCoord.Rd | 8 + man/getAdmin.Rd | 8 + man/getCoord.Rd | 8 + man/getLocation.Rd | 8 + man/parallel_cluster_maker.Rd |only tests/testthat/test_getCoord.R | 10 + tests/testthat/test_getLocation.R | 10 + vignettes/Introduction_to_amapGeocode.Rmd | 32 +---- 23 files changed, 358 insertions(+), 236 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-12-06 0.1.0
Title: Analyze Experimental High-Throughput (Omics) Data
Description: The efficient treatment and convenient analysis of experimental high-throughput (omics) data gets facilitated through this collection of diverse functions.
Several functions address advanced object-conversions, like manipulating lists of lists or lists of arrays, reorganizing lists to arrays or into separate vectors, merging of multiple entries, etc.
Another set of functions provides speed-optimized calculation of standard deviation (sd), coefficient of variance (CV) or standard error of the mean (SEM) for data in matrixes or means per line with respect to additional grouping (eg n groups of replicates).
Other functions facilitate dealing with non-redundant information, by indexing unique, adding counters to redundant or eliminating lines with respect redundancy in a given reference-column, etc.
Help is provided to identify very closely matching numeric values to generate (partial) distance matrixes for very big data in a memory efficient manner or to reduce the complexity of large data-sets by combining very close values.
Many times large experimental datasets need some additional filtering, adequate functions are provided.
Batch reading (or writing) of sets of files and combining data to arrays is supported, too.
Convenient data normalization is supported in various different modes, parameter estimation via permutations or boot-strap as well as flexible testing of multiple pair-wise combinations using the framework of 'limma' is provided, too.
Author: Wolfgang Raffelsberger [aut, cre]
Maintainer: Wolfgang Raffelsberger <w.raffelsberger@unistra.fr>
Diff between wrMisc versions 1.4.1 dated 2020-11-13 and 1.4.2 dated 2020-11-20
DESCRIPTION | 6 +- MD5 | 14 ++--- R/linModelSelect.R | 32 ++++-------- inst/doc/wrMiscVignette1.R | 20 +++---- inst/doc/wrMiscVignette1.Rmd | 111 ++++++++++++++++++++---------------------- inst/doc/wrMiscVignette1.html | 101 +++++++++++++++++++------------------- man/linModelSelect.Rd | 5 + vignettes/wrMiscVignette1.Rmd | 111 ++++++++++++++++++++---------------------- 8 files changed, 196 insertions(+), 204 deletions(-)
Title: Decision Analysis Modelling Package with Parameters Estimation
Ability from Individual Patient Level Data
Description: A collection of functions to construct Markov model for model-based cost-effectiveness analysis.
This includes creating Markov model (both time homogenous and time dependent models), decision analysis,
sensitivity analysis (deterministic and probabilistic). The package allows estimation of parameters for
the Markov model from a given individual patient level data, provided the data file follows some standard
data entry rules.
Author: Sheeja Manchira Krishnan [aut, cre]
Maintainer: Sheeja Manchira Krishnan <sheejamk@gmail.com>
Diff between packDAMipd versions 0.1.0 dated 2020-11-09 and 0.1.2 dated 2020-11-20
packDAMipd-0.1.0/packDAMipd/man/form_expression_mixed_model.Rd |only packDAMipd-0.1.2/packDAMipd/DESCRIPTION | 12 packDAMipd-0.1.2/packDAMipd/MD5 | 76 ++-- packDAMipd-0.1.2/packDAMipd/NAMESPACE | 5 packDAMipd-0.1.2/packDAMipd/R/1_model_functions.R | 9 packDAMipd-0.1.2/packDAMipd/R/2a_parameter_estimation_functions.R | 183 +++++++--- packDAMipd-0.1.2/packDAMipd/R/2b_parameter_estimation_survival_functions.R | 63 ++- packDAMipd-0.1.2/packDAMipd/R/3a_trialdata_analysis_input_functions.R | 20 - packDAMipd-0.1.2/packDAMipd/R/3b_outcome_analysis_functions.R | 60 +++ packDAMipd-0.1.2/packDAMipd/R/3c_cost_analysis_functions.R | 100 +++-- packDAMipd-0.1.2/packDAMipd/R/4a_deterministic_sensitivity_analysis_functions.R | 90 ++-- packDAMipd-0.1.2/packDAMipd/R/4b_probabilistic_sensitivity_analysis_functions.R | 12 packDAMipd-0.1.2/packDAMipd/R/help_parameter_estimation_functions.R | 40 -- packDAMipd-0.1.2/packDAMipd/R/help_parameter_estimation_survival.R | 48 +- packDAMipd-0.1.2/packDAMipd/README.md | 8 packDAMipd-0.1.2/packDAMipd/inst/doc/Deterministic_sensitivity_analysis.html | 4 packDAMipd-0.1.2/packDAMipd/inst/doc/Probabilstic_sensitivity_analysis.html | 40 +- packDAMipd-0.1.2/packDAMipd/inst/doc/Sick_sicker_age_dependent.html | 4 packDAMipd-0.1.2/packDAMipd/inst/doc/Simple_sick_sicker.html | 4 packDAMipd-0.1.2/packDAMipd/inst/doc/cycle_dependent.html | 4 packDAMipd-0.1.2/packDAMipd/inst/extdata/table_param_distrb_no.csv | 2 packDAMipd-0.1.2/packDAMipd/inst/extdata/trial_data_sampleEq5d3l.csv |only packDAMipd-0.1.2/packDAMipd/man/do_diagnostic_glm.Rd | 3 packDAMipd-0.1.2/packDAMipd/man/do_diagnostic_linear_regression.Rd | 3 packDAMipd-0.1.2/packDAMipd/man/form_expression_mixed_model_lme4.Rd |only packDAMipd-0.1.2/packDAMipd/man/get_parameter_estimated_regression.Rd | 13 packDAMipd-0.1.2/packDAMipd/man/plot_prediction_parametric_survival.Rd | 3 packDAMipd-0.1.2/packDAMipd/man/plot_return_residual_survival.Rd | 3 packDAMipd-0.1.2/packDAMipd/man/use_fh2_survival.Rd | 2 packDAMipd-0.1.2/packDAMipd/man/use_fh_survival.Rd | 2 packDAMipd-0.1.2/packDAMipd/man/use_generalised_linear_mixed_model.Rd | 7 packDAMipd-0.1.2/packDAMipd/man/use_linear_mixed_model.Rd | 7 packDAMipd-0.1.2/packDAMipd/man/use_parametric_survival.Rd | 5 packDAMipd-0.1.2/packDAMipd/man/use_survival_analysis.Rd | 5 packDAMipd-0.1.2/packDAMipd/man/value_eq5d3L_IPD.Rd |only packDAMipd-0.1.2/packDAMipd/tests/testthat/test-2a_parameter_estimation_functions.R | 111 +++++- packDAMipd-0.1.2/packDAMipd/tests/testthat/test-2b_parameter_estimation_survival_functions.R | 46 +- packDAMipd-0.1.2/packDAMipd/tests/testthat/test-3b_outcome_analysis_functions.R | 27 + packDAMipd-0.1.2/packDAMipd/tests/testthat/test-3c_cost_analysis_functions.R | 2 packDAMipd-0.1.2/packDAMipd/tests/testthat/test-help_parameter_estimation_functions.R | 56 +-- packDAMipd-0.1.2/packDAMipd/tests/testthat/test-help_parameter_estimation_survival.R | 26 + 41 files changed, 750 insertions(+), 355 deletions(-)
Title: Download and Display Map Tiles
Description: To create maps from tiles, 'maptiles' downloads, composes and
displays tiles from a large number of providers (e.g. 'OpenStreetMap',
'Stamen', 'Esri', 'CARTO', or 'Thunderforest').
Author: Timothée Giraud [cre, aut] (<https://orcid.org/0000-0002-1932-3323>)
Maintainer: Timothée Giraud <timothee.giraud@cnrs.fr>
Diff between maptiles versions 0.1.0 dated 2020-11-10 and 0.1.1 dated 2020-11-20
DESCRIPTION | 8 +-- MD5 | 15 +++---- NAMESPACE | 1 R/get_tiles.R | 81 +++++++++++++++++++++++--------------- R/tiles.R | 7 +++ R/zzz.R |only README.md | 86 ++++++++++++++++++++++++++--------------- inst/tinytest/test_get_tiles.R | 63 ++++++++++++++++-------------- man/get_tiles.Rd | 20 +++------ 9 files changed, 165 insertions(+), 116 deletions(-)
Title: Fast Extraction from Raster Datasets using Polygons
Description: Provides a replacement for the 'extract' function from the 'raster' package
that is suitable for extracting raster values using 'sf' polygons.
Author: Daniel Baston [aut, cre],
ISciences, LLC [cph]
Maintainer: Daniel Baston <dbaston@isciences.com>
Diff between exactextractr versions 0.5.0 dated 2020-10-26 and 0.5.1 dated 2020-11-20
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 6 ++++++ R/exact_extract.R | 12 ++++++------ configure | 18 +++++++++--------- tests/testthat/test_exact_extract.R | 29 +++++++++++++++++++++++++++++ 6 files changed, 58 insertions(+), 23 deletions(-)
Title: Data Package for 'pathfindR'
Description: This is a data-only package, containing data needed to run the CRAN
package 'pathfindR', a package for enrichment analysis utilizing active
subnetworks. This package contains protein-protein interaction network data,
data related to gene sets and example input/output data.
Author: Ege Ulgen [cre, cph] (<https://orcid.org/0000-0003-2090-3621>),
Ozan Ozisik [aut] (<https://orcid.org/0000-0001-5980-8002>)
Maintainer: Ege Ulgen <egeulgen@gmail.com>
Diff between pathfindR.data versions 1.1.0 dated 2020-09-21 and 1.1.1 dated 2020-11-20
DESCRIPTION | 6 +++--- MD5 | 30 ++++++++++++++++-------------- NEWS.md | 11 +++++++++++ R/data.R | 40 +++++++++++++++++++++++++++++----------- R/sysdata.rda |binary data/RA_clustered.rda |binary data/RA_comparison_output.rda |binary data/RA_output.rda |binary data/myeloma_output.rda |binary data/pathfindR.data_updates.rda |only man/RA_clustered.Rd | 5 +++-- man/RA_comparison_output.Rd | 5 +++-- man/RA_output.Rd | 7 ++++--- man/biogrid_adj_list.Rd | 2 +- man/intact_adj_list.Rd | 2 +- man/myeloma_output.Rd | 5 +++-- man/pathfindR.data_updates.Rd |only 17 files changed, 74 insertions(+), 39 deletions(-)
More information about pathfindR.data at CRAN
Permanent link
Title: Lipid Annotation for LC-MS/MS DIA Data
Description: Lipid annotation in untargeted liquid chromatography-data independent acquisition mass spectrometry lipidomics based on fragmentation rules. Alcoriza-Balaguer MI, Garcia-Canaveras JC, Lopez A, Conde I, Juan O, Carretero J, Lahoz A (2019) <doi:10.1021/acs.analchem.8b03409>.
Author: M Isabel Alcoriza-Balaguer, J Carlos Garcia-Canaveras
Maintainer: M Isabel Alcoriza-Balaguer <maribel_alcoriza@iislafe.es>
Diff between LipidMS versions 1.1.0 dated 2019-10-21 and 1.2.0 dated 2020-11-20
DESCRIPTION | 14 - MD5 | 189 +++++++++++++------------- R/assignDB.R | 2 R/chainFrags.R | 11 - R/checkClass.R | 26 --- R/checkIntensityRules.R | 11 - R/coelutingFrags.R | 4 R/combineChains.R | 14 + R/createLipidDB.R | 327 +++++++++++++++++++++++++++++---------------- R/crossTables.R | 32 ++-- R/dataProcessing.R | 10 - R/findCandidates.R | 16 +- R/getInclusionList.R | 2 R/idBAneg.R | 12 - R/idCEpos.R | 4 R/idCLneg.R | 6 R/idCarpos.R | 4 R/idCerneg.R | 4 R/idCerpos.R | 4 R/idDGpos.R | 4 R/idFAHFAneg.R | 4 R/idFAneg.R | 6 R/idLPCneg.R | 4 R/idLPCpos.R | 4 R/idLPEneg.R | 4 R/idLPEpos.R | 4 R/idLPGneg.R | 4 R/idLPIneg.R | 4 R/idLPSneg.R | 4 R/idMGpos.R | 4 R/idNEG.R | 54 ++++--- R/idPCneg.R | 4 R/idPCpos.R | 4 R/idPEneg.R | 4 R/idPEpos.R | 4 R/idPGneg.R | 4 R/idPIneg.R | 4 R/idPOS.R | 39 +++-- R/idPSneg.R | 4 R/idSMpos.R | 4 R/idSphPneg.R | 4 R/idSphPpos.R | 4 R/idSphneg.R | 4 R/idSphpos.R | 4 R/idTGpos.R | 4 R/internaldbs.R | 288 ++++++++++++++++++++++++++++++++++----- R/organizeResults.R | 16 +- build/vignette.rds |binary inst/doc/vignette.R | 22 +-- inst/doc/vignette.html | 34 +++- man/MassLysoPAo.Rd |only man/MassLysoPCo.Rd |only man/MassLysoPCp.Rd |only man/MassLysoPEo.Rd |only man/MassLysoPEp.Rd |only man/MassPCo.Rd |only man/MassPCp.Rd |only man/MassPEo.Rd |only man/MassPEp.Rd |only man/chainFrags.Rd | 11 - man/checkClass.Rd | 29 --- man/checkIntensityRules.Rd | 11 - man/coelutingFrags.Rd | 13 + man/combineChains.Rd | 14 + man/dataProcessing.Rd | 32 +++- man/findCandidates.Rd | 24 ++- man/idBAneg.Rd | 17 +- man/idCEpos.Rd | 21 ++ man/idCLneg.Rd | 26 ++- man/idCarpos.Rd | 20 ++ man/idCerneg.Rd | 26 ++- man/idCerpos.Rd | 26 ++- man/idDGpos.Rd | 26 ++- man/idFAHFAneg.Rd | 25 ++- man/idFAneg.Rd | 19 ++ man/idLPCneg.Rd | 19 ++ man/idLPCpos.Rd | 20 ++ man/idLPEneg.Rd | 21 ++ man/idLPEpos.Rd | 20 ++ man/idLPGneg.Rd | 20 ++ man/idLPIneg.Rd | 20 ++ man/idLPSneg.Rd | 20 ++ man/idMGpos.Rd | 19 ++ man/idNEG.Rd | 12 + man/idPCneg.Rd | 25 ++- man/idPCpos.Rd | 25 ++- man/idPEneg.Rd | 25 ++- man/idPEpos.Rd | 22 ++- man/idPGneg.Rd | 25 ++- man/idPIneg.Rd | 24 ++- man/idPOS.Rd | 12 + man/idPSneg.Rd | 23 ++- man/idSMpos.Rd | 26 ++- man/idSphPneg.Rd | 19 ++ man/idSphPpos.Rd | 19 ++ man/idSphneg.Rd | 19 ++ man/idSphpos.Rd | 19 ++ man/idTGpos.Rd | 26 ++- man/organizeResults.Rd | 28 ++- man/searchIsotopes.Rd | 10 + 100 files changed, 1441 insertions(+), 660 deletions(-)
Title: Hierarchical Non-Negative Matrix Factorization
Description: Hierarchical and single-level non-negative matrix factorization. Several NMF algorithms are available.
Author: Nicolas Sauwen
Maintainer: Nicolas Sauwen <nicolas.sauwen@openanalytics.eu>
Diff between hNMF versions 0.9 dated 2018-10-18 and 1.0 dated 2020-11-20
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- R/importMatlabMriData.R | 48 ++++++++++++++++++++++++------------------------ 3 files changed, 31 insertions(+), 31 deletions(-)
Title: Helps You to Code Cleaner
Description: Check your R code for some of the most common
layout flaws. Many tried to teach us how to write code less dreadful,
be it implicitly as B. W. Kernighan and D. M. Ritchie (1988)
<ISBN:0-13-110362-8> in 'The C Programming Language' did, be it
explicitly as R.C. Martin (2008) <ISBN:0-13-235088-2> in 'Clean Code:
A Handbook of Agile Software Craftsmanship' did. So we should check
our code for files too long or wide, functions with too many lines,
too wide lines, too many arguments or too many levels of nesting.
Note: This is not a static code analyzer like pylint or the like.
Checkout <https://cran.r-project.org/package=lintr> instead.
Author: Andreas Dominik Cullmann [aut, cre]
Maintainer: Andreas Dominik Cullmann <fvafrcu@mailbox.org>
Diff between cleanr versions 1.3.0 dated 2020-01-09 and 1.3.1 dated 2020-11-20
cleanr-1.3.0/cleanr/inst/doc/cleanr_Introduction.Rmd |only cleanr-1.3.0/cleanr/vignettes/cleanr_Introduction.Rmd |only cleanr-1.3.1/cleanr/DESCRIPTION | 12 cleanr-1.3.1/cleanr/LICENSE | 4 cleanr-1.3.1/cleanr/MD5 | 18 cleanr-1.3.1/cleanr/NEWS.md | 10 cleanr-1.3.1/cleanr/build/cleanr.pdf |binary cleanr-1.3.1/cleanr/build/vignette.rds |binary cleanr-1.3.1/cleanr/inst/doc/cleanr_Introduction.R | 17 cleanr-1.3.1/cleanr/inst/doc/cleanr_Introduction.Rasciidoc |only cleanr-1.3.1/cleanr/inst/doc/cleanr_Introduction.html | 1556 +++++++++--- cleanr-1.3.1/cleanr/vignettes/cleanr_Introduction.Rasciidoc |only 12 files changed, 1256 insertions(+), 361 deletions(-)
Title: PX-Web Data by API
Description: Function to read PX-Web data into R via API. The example code reads data from the three national statistical institutes, Statistics Norway, Statistics Sweden and Statistics Finland.
Author: Øyvind Langsrud [aut, cre],
Jan Bruusgaard [aut],
Solveig Bjørkholt [ctb],
Susie Jentoft [ctb]
Maintainer: Øyvind Langsrud <oyl@ssb.no>
Diff between PxWebApiData versions 0.3.0 dated 2019-04-11 and 0.4.0 dated 2020-11-20
DESCRIPTION | 22 +- MD5 | 20 +- NAMESPACE | 1 R/ApiData.R | 69 ++++---- build/vignette.rds |binary inst/doc/Introduction.R | 71 +++++++- inst/doc/Introduction.Rmd | 137 +++++++++++++++- inst/doc/Introduction.html | 347 +++++++++++++++++++++++++++++++----------- man/ApiData.Rd | 77 +++++---- tests/testthat/test-ApiData.R | 19 +- vignettes/Introduction.Rmd | 137 +++++++++++++++- 11 files changed, 706 insertions(+), 194 deletions(-)
Title: Fit and Deploy DECORATE Trees
Description: DECORATE (Diverse Ensemble Creation by Oppositional Relabeling
of Artificial Training Examples) builds an ensemble of J48 trees by recursively
adding artificial samples of the training data ("Melville, P., & Mooney, R. J. (2005) <DOI:10.1016/j.inffus.2004.04.001>").
Author: Matthias Bogaert
Maintainer: Matthias Bogaert <Matthias.Bogaert@UGent.Be>
Diff between DecorateR versions 0.1.1 dated 2017-02-22 and 0.1.2 dated 2020-11-20
DESCRIPTION | 12 ++--- MD5 | 12 ++--- R/DECORATE.R | 4 - R/predict.DECORATE.R | 107 +++++++++++++++++++++++++++++------------------- inst/NEWS | 13 +++-- man/DECORATE.Rd | 7 +-- man/predict.DECORATE.Rd | 5 +- 7 files changed, 93 insertions(+), 67 deletions(-)
Title: Synoptic Climate Classification and Spatial Regionalization of
Environmental Data
Description: Set of functions to compute different types of synoptic classification methods and for analysing their effect on environmental variables. More information about the methods used in Lemus-Canovas et al. 2019 <DOI:10.1016/j.atmosres.2019.01.018>, Martin-Vide et al. 2008 <DOI:10.5194/asr-2-99-2008> and Jenkinson and Collison 1977.
Author: Marc Lemus-Canovas [aut, cre] (<https://orcid.org/0000-0002-0925-3827>),
Dominic Roye) [aut] (<https://orcid.org/0000-0002-5516-6396>)
Maintainer: Marc Lemus-Canovas <mlemus@ub.edu>
Diff between synoptReg versions 1.0.2 dated 2020-09-04 and 1.1.0 dated 2020-11-20
DESCRIPTION | 16 +++++++-------- MD5 | 24 ++++++++++++++--------- NAMESPACE | 11 ++++++++++ R/get_lamb_points.R |only R/lamb_clas.R |only R/plot_lamb_scheme.R |only R/synoptclas.R | 50 +++++++++++++++++++++++++++++++++++++----------- man/download_ncep.Rd | 17 ++++++++++++---- man/get_lamb_points.Rd |only man/lamb_clas.Rd |only man/mslp.Rd | 6 +++-- man/pcp.Rd | 6 +++-- man/plot_lamb_scheme.Rd |only man/synoptclas.Rd | 11 ++++------ man/tidy_nc.Rd | 9 ++++++-- man/z500.Rd | 6 +++-- 16 files changed, 110 insertions(+), 46 deletions(-)
Title: Minimal Interface of the C++ 'MixtComp' Library for Mixture
Models with Heterogeneous and (Partially) Missing Data
Description: Mixture Composer <https://github.com/modal-inria/MixtComp> is a project to build mixture models with
heterogeneous data sets and partially missing data management.
It includes models for real, categorical, counting, functional and ranking data.
This package contains the minimal R interface of the C++ 'MixtComp' library.
Author: Vincent Kubicki [aut],
Christophe Biernacki [aut],
Quentin Grimonprez [aut],
Serge Iovleff [ctb],
Matthieu Marbac-Lourdelle [ctb],
Étienne Goffinet [ctb],
Patrick Wieschollek [ctb] (for CppOptimizationLibrary),
Tobias Wood [ctb] (for CppOptimizationLibrary),
Julien Vandaele [ctb, cre]
Maintainer: Julien Vandaele <julien.vandaele@inria.fr>
Diff between RMixtCompIO versions 4.0.5 dated 2020-06-18 and 4.0.6 dated 2020-11-20
RMixtCompIO-4.0.5/RMixtCompIO/src/lib/Mixture/Functional/FuncProblem.h |only RMixtCompIO-4.0.5/RMixtCompIO/src/lib/Mixture/Functional/Function.cpp |only RMixtCompIO-4.0.5/RMixtCompIO/src/lib/Mixture/Functional/Function.h |only RMixtCompIO-4.0.5/RMixtCompIO/src/lib/Mixture/Functional/FunctionalClass.cpp |only RMixtCompIO-4.0.5/RMixtCompIO/src/lib/Mixture/Functional/FunctionalClass.h |only RMixtCompIO-4.0.5/RMixtCompIO/src/lib/Mixture/Functional/FunctionalComputation.cpp |only RMixtCompIO-4.0.5/RMixtCompIO/src/lib/Mixture/Functional/FunctionalComputation.h |only RMixtCompIO-4.0.5/RMixtCompIO/src/lib/Mixture/Functional/FunctionalMixture.h |only RMixtCompIO-4.0.5/RMixtCompIO/src/lib/Mixture/Functional/FunctionalParser.cpp |only RMixtCompIO-4.0.5/RMixtCompIO/src/lib/Mixture/Functional/FunctionalParser.h |only RMixtCompIO-4.0.5/RMixtCompIO/src/lib/Mixture/Functional/FunctionalSharedAlphaMixture.h |only RMixtCompIO-4.0.5/RMixtCompIO/src/lib/Mixture/Rank/RankClass.cpp |only RMixtCompIO-4.0.5/RMixtCompIO/src/lib/Mixture/Rank/RankClass.h |only RMixtCompIO-4.0.5/RMixtCompIO/src/lib/Mixture/Rank/RankIndividual.cpp |only RMixtCompIO-4.0.5/RMixtCompIO/src/lib/Mixture/Rank/RankIndividual.h |only RMixtCompIO-4.0.5/RMixtCompIO/src/lib/Mixture/Rank/RankLikelihood.cpp |only RMixtCompIO-4.0.5/RMixtCompIO/src/lib/Mixture/Rank/RankLikelihood.h |only RMixtCompIO-4.0.5/RMixtCompIO/src/lib/Mixture/Rank/RankMixture.h |only RMixtCompIO-4.0.5/RMixtCompIO/src/lib/Mixture/Rank/RankParser.cpp |only RMixtCompIO-4.0.5/RMixtCompIO/src/lib/Mixture/Rank/RankParser.h |only RMixtCompIO-4.0.5/RMixtCompIO/src/lib/Mixture/Rank/RankStat.cpp |only RMixtCompIO-4.0.5/RMixtCompIO/src/lib/Mixture/Rank/RankStat.h |only RMixtCompIO-4.0.5/RMixtCompIO/src/lib/Mixture/Simple/Categorical |only RMixtCompIO-4.0.5/RMixtCompIO/src/lib/Statistic/NormalStatistic.cpp |only RMixtCompIO-4.0.5/RMixtCompIO/src/lib/Statistic/NormalStatistic.h |only RMixtCompIO-4.0.6/RMixtCompIO/DESCRIPTION | 25 +- RMixtCompIO-4.0.6/RMixtCompIO/MD5 | 92 ++++------ RMixtCompIO-4.0.6/RMixtCompIO/NEWS | 6 RMixtCompIO-4.0.6/RMixtCompIO/src/Makevars | 2 RMixtCompIO-4.0.6/RMixtCompIO/src/lib/CMakeLists.txt | 58 +++--- RMixtCompIO-4.0.6/RMixtCompIO/src/lib/Composer/MixtureComposer.cpp | 6 RMixtCompIO-4.0.6/RMixtCompIO/src/lib/Composer/ZClassInd.cpp | 2 RMixtCompIO-4.0.6/RMixtCompIO/src/lib/Manager/createAllMixtures.h | 16 - RMixtCompIO-4.0.6/RMixtCompIO/src/lib/MixtComp.h | 12 - RMixtCompIO-4.0.6/RMixtCompIO/src/lib/Mixture/Functional/FuncCSClass.cpp |only RMixtCompIO-4.0.6/RMixtCompIO/src/lib/Mixture/Functional/FuncCSClass.h |only RMixtCompIO-4.0.6/RMixtCompIO/src/lib/Mixture/Functional/FuncCSComputation.cpp |only RMixtCompIO-4.0.6/RMixtCompIO/src/lib/Mixture/Functional/FuncCSComputation.h |only RMixtCompIO-4.0.6/RMixtCompIO/src/lib/Mixture/Functional/FuncCSMixture.h |only RMixtCompIO-4.0.6/RMixtCompIO/src/lib/Mixture/Functional/FuncCSProblem.h |only RMixtCompIO-4.0.6/RMixtCompIO/src/lib/Mixture/Functional/FuncSharedAlphaCSMixture.h |only RMixtCompIO-4.0.6/RMixtCompIO/src/lib/Mixture/Functional/FunctionCS.cpp |only RMixtCompIO-4.0.6/RMixtCompIO/src/lib/Mixture/Functional/FunctionCS.h |only RMixtCompIO-4.0.6/RMixtCompIO/src/lib/Mixture/Functional/FunctionCSParser.cpp |only RMixtCompIO-4.0.6/RMixtCompIO/src/lib/Mixture/Functional/FunctionCSParser.h |only RMixtCompIO-4.0.6/RMixtCompIO/src/lib/Mixture/IMixture.h | 2 RMixtCompIO-4.0.6/RMixtCompIO/src/lib/Mixture/Rank/RankISRClass.cpp |only RMixtCompIO-4.0.6/RMixtCompIO/src/lib/Mixture/Rank/RankISRClass.h |only RMixtCompIO-4.0.6/RMixtCompIO/src/lib/Mixture/Rank/RankISRIndividual.cpp |only RMixtCompIO-4.0.6/RMixtCompIO/src/lib/Mixture/Rank/RankISRIndividual.h |only RMixtCompIO-4.0.6/RMixtCompIO/src/lib/Mixture/Rank/RankISRMixture.h |only RMixtCompIO-4.0.6/RMixtCompIO/src/lib/Mixture/Rank/RankISRParser.cpp |only RMixtCompIO-4.0.6/RMixtCompIO/src/lib/Mixture/Rank/RankISRParser.h |only RMixtCompIO-4.0.6/RMixtCompIO/src/lib/Mixture/Rank/RankISRStat.cpp |only RMixtCompIO-4.0.6/RMixtCompIO/src/lib/Mixture/Rank/RankISRStat.h |only RMixtCompIO-4.0.6/RMixtCompIO/src/lib/Mixture/Simple/Gaussian/GaussianLikelihood.h | 4 RMixtCompIO-4.0.6/RMixtCompIO/src/lib/Mixture/Simple/Gaussian/GaussianSampler.h | 4 RMixtCompIO-4.0.6/RMixtCompIO/src/lib/Mixture/Simple/Multinomial |only RMixtCompIO-4.0.6/RMixtCompIO/src/lib/Mixture/Simple/SimpleMixture.h | 4 RMixtCompIO-4.0.6/RMixtCompIO/src/lib/Mixture/Simple/Weibull/WeibullStatistic.cpp | 3 RMixtCompIO-4.0.6/RMixtCompIO/src/lib/Statistic/GaussianStatistic.cpp |only RMixtCompIO-4.0.6/RMixtCompIO/src/lib/Statistic/GaussianStatistic.h |only RMixtCompIO-4.0.6/RMixtCompIO/src/lib/Statistic/Statistic.h | 2 RMixtCompIO-4.0.6/RMixtCompIO/src/lib/Various/Enum.h | 21 -- RMixtCompIO-4.0.6/RMixtCompIO/src/rmc.cpp | 15 - 65 files changed, 129 insertions(+), 145 deletions(-)
More information about reliabilitydiag at CRAN
Permanent link
Title: Download and Tidy Time Series Data from the Australian Bureau of
Statistics
Description: Downloads, imports, and tidies time series data from the
Australian Bureau of Statistics <https://www.abs.gov.au/>.
Author: Matt Cowgill [aut, cre],
Zoe Meers [aut],
Jaron Lee [aut],
David Diviny [aut],
Hugh Parsonage [ctb]
Maintainer: Matt Cowgill <mattcowgill@gmail.com>
Diff between readabs versions 0.4.5.1 dated 2020-10-14 and 0.4.6 dated 2020-11-20
DESCRIPTION | 12 MD5 | 38 +- NAMESPACE | 2 NEWS.md | 8 R/get_available_files.r | 40 ++- R/read_abs.R | 2 R/read_awe.R |only R/read_payrolls.R |only R/scrape_abs_catalogues.r | 9 R/sysdata.rda |binary README.md | 118 +++------ build/vignette.rds |binary inst/doc/readabs_vignette.html | 311 +++++++++++++----------- man/figures/README-all-in-one-example-1.png |binary man/figures/logo.png |only man/read_awe.Rd |only man/read_payrolls.Rd |only man/tidy_awe.Rd |only tests/testthat/test-data-uptodate.R | 7 tests/testthat/test-get_available_files.r | 10 tests/testthat/test-read_awe.R |only tests/testthat/test-read_payrolls.R |only tests/testthat/test-readabs.R | 10 tests/testthat/test-show_available_catalogues.r | 10 24 files changed, 306 insertions(+), 271 deletions(-)
Title: Build MultiClass Pair-Based Classifiers using TSPs or RF
Description: A toolbox to train a single sample classifier that uses in-sample feature relationships. The relationships are represented as feature1 < feature2 (e.g. gene1 < gene2). We provide two options to go with. First is based on 'switchBox' package which uses Top-score pairs algorithm. Second is a novel implementation based on random forest algorithm. For simple problems we recommend to use one-vs-rest using TSP option due to its simplicity and for being easy to interpret. For complex problems RF performs better. Both lines filter the features first then combine the filtered features to make the list of all the possible rules (i.e. rule1: feature1 < feature2, rule2: feature1 < feature3, etc...). Then the list of rules will be filtered and the most important and informative rules will be kept. The informative rules will be assembled in an one-vs-rest model or in an RF model. We provide a detailed description with each function in this package to explain the filtration and training methodology in each line.
Author: Nour-al-dain Marzouka
Maintainer: Nour-al-dain Marzouka <Nour-al-dain.Marzouka@med.lu.se>
Diff between multiclassPairs versions 0.3.1 dated 2020-11-16 and 0.4.0 dated 2020-11-20
DESCRIPTION | 6 +-- MD5 | 8 ++-- NEWS.md | 5 ++ R/functions.R | 90 +++++++++++++++++++++++++++++++------------------ inst/doc/Tutorial.html | 27 +++++++------- 5 files changed, 83 insertions(+), 53 deletions(-)
More information about multiclassPairs at CRAN
Permanent link
Title: Gaussian Mixture Modelling for Model-Based Clustering,
Classification, and Density Estimation
Description: Gaussian finite mixture models fitted via EM algorithm for model-based clustering, classification, and density estimation, including Bayesian regularization, dimension reduction for visualisation, and resampling-based inference.
Author: Chris Fraley [aut],
Adrian E. Raftery [aut] (<https://orcid.org/0000-0002-6589-301X>),
Luca Scrucca [aut, cre] (<https://orcid.org/0000-0003-3826-0484>),
Thomas Brendan Murphy [ctb] (<https://orcid.org/0000-0002-5668-7046>),
Michael Fop [ctb] (<https://orcid.org/0000-0003-3936-2757>)
Maintainer: Luca Scrucca <luca.scrucca@unipg.it>
Diff between mclust versions 5.4.6 dated 2020-04-11 and 5.4.7 dated 2020-11-20
mclust-5.4.6/mclust/data/Baudry_etal_2010_JCGS_examples.rda |only mclust-5.4.6/mclust/data/EuroUnemployment.rda |only mclust-5.4.6/mclust/data/GvHD.rda |only mclust-5.4.6/mclust/data/acidity.rda |only mclust-5.4.6/mclust/data/banknote.txt.gz |only mclust-5.4.6/mclust/data/chevron.rda |only mclust-5.4.6/mclust/data/cross.rda |only mclust-5.4.6/mclust/data/diabetes.rda |only mclust-5.4.6/mclust/data/thyroid.rda |only mclust-5.4.6/mclust/data/wdbc.txt.gz |only mclust-5.4.6/mclust/data/wreath.rda |only mclust-5.4.6/mclust/inst/NEWS |only mclust-5.4.6/mclust/man/randomPairs.Rd |only mclust-5.4.7/mclust/DESCRIPTION | 8 mclust-5.4.7/mclust/MD5 | 141 - mclust-5.4.7/mclust/NAMESPACE | 14 mclust-5.4.7/mclust/NEWS.md | 9 mclust-5.4.7/mclust/R/graphics.R | 19 mclust-5.4.7/mclust/R/mbahc.R | 395 ++- mclust-5.4.7/mclust/R/mclust.R | 53 mclust-5.4.7/mclust/R/mclustda.R | 5 mclust-5.4.7/mclust/R/mclustssc.R |only mclust-5.4.7/mclust/R/options.R | 8 mclust-5.4.7/mclust/R/util.R | 25 mclust-5.4.7/mclust/build/vignette.rds |binary mclust-5.4.7/mclust/data/Baudry_etal_2010_JCGS_examples.R |only mclust-5.4.7/mclust/data/EuroUnemployment.R |only mclust-5.4.7/mclust/data/GvHD.R |only mclust-5.4.7/mclust/data/acidity.R |only mclust-5.4.7/mclust/data/banknote.txt |only mclust-5.4.7/mclust/data/chevron.R |only mclust-5.4.7/mclust/data/cross.R |only mclust-5.4.7/mclust/data/diabetes.R |only mclust-5.4.7/mclust/data/thyroid.R |only mclust-5.4.7/mclust/data/wdbc.txt |only mclust-5.4.7/mclust/data/wreath.R |only mclust-5.4.7/mclust/inst/doc/mclust.R | 14 mclust-5.4.7/mclust/inst/doc/mclust.Rmd | 22 mclust-5.4.7/mclust/inst/doc/mclust.html | 1281 ++++++------ mclust-5.4.7/mclust/man/Mclust.Rd | 2 mclust-5.4.7/mclust/man/MclustDA.Rd | 7 mclust-5.4.7/mclust/man/MclustDR.Rd | 23 mclust-5.4.7/mclust/man/MclustSSC.Rd |only mclust-5.4.7/mclust/man/adjustedRandIndex.Rd | 2 mclust-5.4.7/mclust/man/bic.Rd | 2 mclust-5.4.7/mclust/man/cdfMclust.Rd | 2 mclust-5.4.7/mclust/man/clPairs.Rd | 10 mclust-5.4.7/mclust/man/clustCombi.Rd | 4 mclust-5.4.7/mclust/man/combiPlot.Rd | 2 mclust-5.4.7/mclust/man/decomp2sigma.Rd | 2 mclust-5.4.7/mclust/man/defaultPrior.Rd | 2 mclust-5.4.7/mclust/man/em.Rd | 10 mclust-5.4.7/mclust/man/emControl.Rd | 6 mclust-5.4.7/mclust/man/emE.Rd | 14 mclust-5.4.7/mclust/man/entPlot.Rd | 2 mclust-5.4.7/mclust/man/estep.Rd | 10 mclust-5.4.7/mclust/man/hc.Rd | 66 mclust-5.4.7/mclust/man/hcE.Rd | 4 mclust-5.4.7/mclust/man/hcRandomPairs.Rd |only mclust-5.4.7/mclust/man/hclass.Rd | 2 mclust-5.4.7/mclust/man/imputePairs.Rd | 2 mclust-5.4.7/mclust/man/mapClass.Rd | 2 mclust-5.4.7/mclust/man/mclust.options.Rd | 2 mclust-5.4.7/mclust/man/mclustBIC.Rd | 2 mclust-5.4.7/mclust/man/mclustBICupdate.Rd | 2 mclust-5.4.7/mclust/man/mclustModelNames.Rd | 2 mclust-5.4.7/mclust/man/me.Rd | 12 mclust-5.4.7/mclust/man/me.weighted.Rd | 4 mclust-5.4.7/mclust/man/meE.Rd | 4 mclust-5.4.7/mclust/man/mstep.Rd | 10 mclust-5.4.7/mclust/man/mvn.Rd | 2 mclust-5.4.7/mclust/man/mvnX.Rd | 2 mclust-5.4.7/mclust/man/partuniq.Rd | 1 mclust-5.4.7/mclust/man/plot.MclustSSC.Rd |only mclust-5.4.7/mclust/man/plot.hc.Rd |only mclust-5.4.7/mclust/man/predict.MclustSSC.Rd |only mclust-5.4.7/mclust/man/priorControl.Rd | 2 mclust-5.4.7/mclust/man/randomOrthogonalMatrix.Rd | 22 mclust-5.4.7/mclust/man/sigma2decomp.Rd | 2 mclust-5.4.7/mclust/man/sim.Rd | 4 mclust-5.4.7/mclust/man/simE.Rd | 14 mclust-5.4.7/mclust/man/summary.MclustSSC.Rd |only mclust-5.4.7/mclust/man/thyroid.Rd | 2 mclust-5.4.7/mclust/man/unmap.Rd | 2 mclust-5.4.7/mclust/src/mclust.f | 158 - mclust-5.4.7/mclust/vignettes/mclust.Rmd | 22 mclust-5.4.7/mclust/vignettes/vignette.css | 2 87 files changed, 1299 insertions(+), 1144 deletions(-)
Title: Basic Functions to Check Readability, Consistency, and Content
of an Individual Participant Data File
Description: Basic checks needed with an individual level participant data from randomised controlled trial. This
checks files for existence, read access and individual columns for formats. The checks on format is currently implemented for gender and age formats.
Author: Sheeja Manchira Krishnan
Maintainer: Sheeja Manchira Krishnan <sheejamk@gmail.com>
Diff between IPDFileCheck versions 0.6.3 dated 2020-06-12 and 0.6.4 dated 2020-11-20
IPDFileCheck-0.6.3/IPDFileCheck/man/check_colno_pattern_colname.Rd |only IPDFileCheck-0.6.3/IPDFileCheck/man/convert_date_numeric_stdform_old.Rd |only IPDFileCheck-0.6.3/IPDFileCheck/tests/testthat/testthat.R |only IPDFileCheck-0.6.4/IPDFileCheck/DESCRIPTION | 13 IPDFileCheck-0.6.4/IPDFileCheck/MD5 | 48 IPDFileCheck-0.6.4/IPDFileCheck/NAMESPACE | 3 IPDFileCheck-0.6.4/IPDFileCheck/R/IPDFilecheck.R | 2037 ++++------ IPDFileCheck-0.6.4/IPDFileCheck/R/globals.R | 13 IPDFileCheck-0.6.4/IPDFileCheck/README.md | 7 IPDFileCheck-0.6.4/IPDFileCheck/build/vignette.rds |binary IPDFileCheck-0.6.4/IPDFileCheck/inst/doc/User_Guide.R | 172 IPDFileCheck-0.6.4/IPDFileCheck/inst/doc/User_Guide.html | 806 ++- IPDFileCheck-0.6.4/IPDFileCheck/man/calculate_age_from_dob.Rd | 6 IPDFileCheck-0.6.4/IPDFileCheck/man/check_col_pattern_colname.Rd |only IPDFileCheck-0.6.4/IPDFileCheck/man/check_column_exists.Rd | 3 IPDFileCheck-0.6.4/IPDFileCheck/man/convert_date_numeric_stdform.Rd | 6 IPDFileCheck-0.6.4/IPDFileCheck/man/convert_date_string_stdform.Rd | 3 IPDFileCheck-0.6.4/IPDFileCheck/man/descriptive_stats_col.Rd | 3 IPDFileCheck-0.6.4/IPDFileCheck/man/get_columnno_fornames.Rd | 3 IPDFileCheck-0.6.4/IPDFileCheck/man/get_mode_from_vector.Rd | 4 IPDFileCheck-0.6.4/IPDFileCheck/man/get_sem.Rd | 4 IPDFileCheck-0.6.4/IPDFileCheck/man/present_mean_sd_rmna_text.Rd | 4 IPDFileCheck-0.6.4/IPDFileCheck/man/test_data_numeric_norange.Rd | 6 IPDFileCheck-0.6.4/IPDFileCheck/man/test_data_string.Rd | 3 IPDFileCheck-0.6.4/IPDFileCheck/man/test_data_string_restriction.Rd | 12 IPDFileCheck-0.6.4/IPDFileCheck/man/test_gender.Rd | 3 IPDFileCheck-0.6.4/IPDFileCheck/tests/testthat.R |only IPDFileCheck-0.6.4/IPDFileCheck/tests/testthat/test-IPDFilecheck.R |only 28 files changed, 1658 insertions(+), 1501 deletions(-)
Title: Synthesizing Causal Evidence in a Distributed Research Network
Description: Routines for combining causal effect estimates and study diagnostics across multiple data sites in a distributed study, without sharing patient-level data.
Allows for normal and non-normal approximations of the data-site likelihood of the effect parameter.
Author: Martijn Schuemie [aut, cre],
Marc A. Suchard [aut],
Observational Health Data Science and Informatics [cph]
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between EvidenceSynthesis versions 0.2.0 dated 2020-11-19 and 0.2.1 dated 2020-11-20
DESCRIPTION | 10 ++-- MD5 | 24 +++++---- NAMESPACE | 1 NEWS.md | 10 ++++ R/BayesianMetaAnalysis.R | 21 ++++++++ R/LikelihoodApproximation.R | 2 R/Utilities.R |only README.md | 6 +- inst/doc/NonNormalEffectSynthesis.pdf |binary man/computeConfidenceInterval.Rd | 70 ++++++++++++++-------------- man/skewNormal.Rd | 2 man/supportsJava8.Rd |only tests/testthat/test-java.R | 9 +-- tests/testthat/test-nonNormalMetaAnalysis.R | 4 + 14 files changed, 97 insertions(+), 62 deletions(-)
More information about EvidenceSynthesis at CRAN
Permanent link
Title: Applied Singular Spectrum Analysis (ASSA)
Description: Functions to model and decompose time series into principal components using singular spectrum analysis (de Carvalho and Rua (2017) <doi:10.1016/j.ijforecast.2015.09.004>; de Carvalho et al (2012) <doi:10.1016/j.econlet.2011.09.007>).
Author: Miguel de Carvalho [aut, cre],
Gabriel Martos [aut]
Maintainer: Miguel de Carvalho <miguel.decarvalho@ed.ac.uk>
Diff between ASSA versions 1.0 dated 2018-05-14 and 2.0 dated 2020-11-20
DESCRIPTION | 11 - MD5 | 45 ++++-- NAMESPACE | 46 ++++-- R/isst.R |only R/itsframe.R |only R/misst.R |only R/mitsframe.R |only R/msst.R | 382 ++++++++++++++++++++++-------------------------------- R/msstc.R | 124 +++++++++++++++-- R/mtsframe.R | 28 ++- R/predict.R |only R/sst.R | 281 ++++++++++++++++----------------------- R/tsframe.R |only R/workhorse.R | 319 ++++++++++++++++++++++++--------------------- data/merval.RData |only man/ASSA.Rd | 2 man/brexit.Rd | 5 man/isst.Rd |only man/itsframe.Rd |only man/merval.Rd |only man/misst.Rd |only man/mitsframe.Rd |only man/msst.Rd | 86 +++++------- man/msstc.Rd | 69 ++++----- man/mtsframe.Rd | 28 ++- man/predict.Rd |only man/sst.Rd | 118 +++++----------- man/tsframe.Rd |only src/ASSA_init.c | 8 - src/AUTOCOV.f90 |only src/YYi.f90 |only src/Yi.f90 |only 32 files changed, 775 insertions(+), 777 deletions(-)
Title: Aggregate Numeric, Date and Categorical Variables
Description: Convenience functions for aggregating a data frame or data table.
Currently mean, sum and variance are supported. For Date variables, the recency
and duration are supported. There is also support for dummy variables in
predictive contexts. Code has been completely re-written in data.table for computational speed.
Author: Matthias Bogaert, Michel Ballings, Dirk Van den Poel
Maintainer: Matthias Bogaert <matthias.bogaert@ugent.be>
Diff between AggregateR versions 0.1.0 dated 2020-11-18 and 0.1.1 dated 2020-11-20
DESCRIPTION | 8 ++++---- MD5 | 9 +++++---- R/Aggregate.R | 32 +++++++++++++++++--------------- README.md |only inst/NEWS | 7 ++++++- man/Aggregate.Rd | 4 ++-- 6 files changed, 34 insertions(+), 26 deletions(-)
More information about specmine.datasets at CRAN
Permanent link
More information about MetaIntegration at CRAN
Permanent link
Title: Helpers for Developing Command Line Interfaces
Description: A suite of tools to build attractive command line interfaces
('CLIs'), from semantic elements: headings, lists, alerts, paragraphs,
etc. Supports custom themes via a 'CSS'-like language. It also contains a
number of lower level 'CLI' elements: rules, boxes, trees, and
'Unicode' symbols with 'ASCII' alternatives. It integrates with the
'crayon' package to support 'ANSI' terminal colors.
Author: Gábor Csárdi [aut, cre],
Hadley Wickham [ctb],
Kirill Müller [ctb]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between cli versions 2.1.0 dated 2020-10-12 and 2.2.0 dated 2020-11-20
DESCRIPTION | 6 +-- MD5 | 63 +++++++++++++++++++++++---------------- NAMESPACE | 36 +++++++++++++++++++--- NEWS.md | 18 +++++++++++ R/ansi-hyperlink.R |only R/boxes.R | 7 +--- R/cli.R | 8 +++- R/crayon-utils.R |only R/crayon.R | 12 ++++++- R/crayonex.R |only R/format.R | 4 +- R/print.R | 8 ++++ R/rules.R | 21 ++++--------- R/spinner.R | 2 - R/status-bar.R | 6 ++- R/themes.R | 8 ++-- R/tree.R | 2 - R/tty.R | 1 R/utils.R | 9 +++-- man/ansi-styles.Rd | 2 - man/ansi_align.Rd |only man/ansi_has_any.Rd |only man/ansi_hide_cursor.Rd | 7 ++++ man/ansi_nchar.Rd |only man/ansi_regex.Rd |only man/ansi_strip.Rd |only man/ansi_strsplit.Rd |only man/ansi_substr.Rd |only man/ansi_substring.Rd |only man/cli_dl.Rd | 2 - man/cli_li.Rd | 2 - man/cli_ol.Rd | 2 - man/cli_ul.Rd | 2 - man/cli_vec.Rd | 4 +- man/style_hyperlink.Rd |only tests/testthat/test-crayon.R | 2 - tests/testthat/test-crayonex.R |only tests/testthat/test-status-bar.R | 24 +++++++------- tests/testthat/test-subprocess.R | 4 +- 39 files changed, 174 insertions(+), 88 deletions(-)
Title: High-Performance Triangular Distribution Functions
Description: A collection of high-performance functions for the triangular
distribution that consists of the probability density function, cumulative
distribution function, quantile function, random variate generator, moment
generating function, characteristic function, and expected shortfall
function. References: Samuel Kotz, Johan Ren Van Dorp (2004)
<doi:10.1142/5720>, Melissa E. O'Neill (2014)
<https://www.cs.hmc.edu/tr/hmc-cs-2014-0905.pdf>, David Blackman and
Sebastiano Vigna (2018) <arXiv:1805.01407>, and Acerbi, Carlo and
Tasche, Dirk. (2002) <doi:10.1111/1468-0300.00091>.
Author: Alvin Nursalim [aut, cre]
Maintainer: Alvin Nursalim <alvin.nursalim@outlook.com>
Diff between triangulr versions 1.0.0 dated 2020-09-28 and 1.1.0 dated 2020-11-20
triangulr-1.0.0/triangulr/src/qtri.h |only triangulr-1.1.0/triangulr/DESCRIPTION | 21 - triangulr-1.1.0/triangulr/MD5 | 47 +- triangulr-1.1.0/triangulr/NEWS.md | 17 triangulr-1.1.0/triangulr/R/RcppExports.R | 8 triangulr-1.1.0/triangulr/R/Triangular.R | 34 + triangulr-1.1.0/triangulr/R/ctri.R | 8 triangulr-1.1.0/triangulr/R/dtri.R | 9 triangulr-1.1.0/triangulr/R/error.R | 44 +- triangulr-1.1.0/triangulr/R/estri.R | 47 +- triangulr-1.1.0/triangulr/R/mgtri.R | 8 triangulr-1.1.0/triangulr/R/ptri.R | 14 triangulr-1.1.0/triangulr/R/qtri.R | 14 triangulr-1.1.0/triangulr/R/rtri.R | 13 triangulr-1.1.0/triangulr/README.md | 83 +++- triangulr-1.1.0/triangulr/man/Triangular.Rd | 361 ++++++++++--------- triangulr-1.1.0/triangulr/src/RcppExports.cpp | 18 triangulr-1.1.0/triangulr/src/ctri.cpp | 30 - triangulr-1.1.0/triangulr/src/dtri.cpp | 15 triangulr-1.1.0/triangulr/src/estri.cpp | 37 - triangulr-1.1.0/triangulr/src/mgtri.cpp | 31 - triangulr-1.1.0/triangulr/src/ptri.cpp | 22 - triangulr-1.1.0/triangulr/src/qtri.cpp | 23 - triangulr-1.1.0/triangulr/src/rtri.cpp | 66 ++- triangulr-1.1.0/triangulr/tests/testthat/test-rtri.R | 43 +- 25 files changed, 600 insertions(+), 413 deletions(-)
Title: Creates Statistical Reports
Description: Contains functions to create regulatory-style statistical reports.
Originally designed to create tables, listings, and figures for the
pharmaceutical, biotechnology, and medical device industries, these
reports are generalized enough that they could be used in any industry.
Generates text, rich-text, and PDF file formats. The package specializes
in printing wide and long tables with automatic page wrapping and splitting.
Reports can be produced with a minimum of function calls, and without
relying on other table packages. The package supports titles, footnotes,
page header, page footers, spanning headers, page by variables,
and automatic page numbering.
Author: David Bosak
Maintainer: David Bosak <dbosak01@gmail.com>
Diff between reporter versions 1.0.5 dated 2020-11-19 and 1.0.6 dated 2020-11-20
DESCRIPTION | 12 + MD5 | 20 +-- R/plot_spec.R | 6 R/write_report_pdf.R | 4 README.md | 4 inst/doc/reporter.Rmd | 4 inst/doc/reporter.html | 8 - man/create_plot.Rd | 6 tests/testthat/test-pdf.R | 276 ++++++++++++++++++++++++--------------------- tests/testthat/test-user.R | 33 +++-- vignettes/reporter.Rmd | 4 11 files changed, 210 insertions(+), 167 deletions(-)
Title: Validation of Local and Remote Data Tables
Description: Validate data in data frames, 'tibble' objects, 'Spark'
'DataFrames', and database tables (e.g., 'PostgreSQL' and 'MySQL').
Validation pipelines can be made using easily-readable, consecutive
validation steps. Upon execution of the validation plan, several reporting
options are available. User-defined thresholds for failure rates allow for
the determination of appropriate reporting actions. Many other workflows are
available including an information management workflow, where the aim is to
record, collect, and generate useful information on data tables.
Author: Richard Iannone [aut, cre] (<https://orcid.org/0000-0003-3925-190X>),
Mauricio Vargas [aut] (<https://orcid.org/0000-0003-1017-7574>)
Maintainer: Richard Iannone <riannone@me.com>
Diff between pointblank versions 0.5.2 dated 2020-08-28 and 0.6.0 dated 2020-11-20
pointblank-0.5.2/pointblank/R/agent_ops.R |only pointblank-0.5.2/pointblank/R/examination.R |only pointblank-0.5.2/pointblank/R/read_yaml.R |only pointblank-0.5.2/pointblank/R/utils_text_table_scan.R |only pointblank-0.5.2/pointblank/R/write_yaml.R |only pointblank-0.5.2/pointblank/inst/text/translations |only pointblank-0.5.2/pointblank/inst/x.yml |only pointblank-0.5.2/pointblank/man/agent_read.Rd |only pointblank-0.5.2/pointblank/man/agent_write.Rd |only pointblank-0.5.2/pointblank/man/agent_yaml_interrogate.Rd |only pointblank-0.5.2/pointblank/man/agent_yaml_read.Rd |only pointblank-0.5.2/pointblank/man/agent_yaml_show_exprs.Rd |only pointblank-0.5.2/pointblank/man/agent_yaml_string.Rd |only pointblank-0.5.2/pointblank/man/agent_yaml_write.Rd |only pointblank-0.5.2/pointblank/man/email_preview.Rd |only pointblank-0.5.2/pointblank/man/rows_not_duplicated.Rd |only pointblank-0.5.2/pointblank/tests/testthat/scan_data.R |only pointblank-0.5.2/pointblank/tests/testthat/sqlserver.R |only pointblank-0.5.2/pointblank/tests/testthat/test-agent_ops.R |only pointblank-0.5.2/pointblank/tests/testthat/test-get_summary.R |only pointblank-0.6.0/pointblank/DESCRIPTION | 24 pointblank-0.6.0/pointblank/MD5 | 407 - pointblank-0.6.0/pointblank/NAMESPACE | 33 pointblank-0.6.0/pointblank/NEWS.md | 82 pointblank-0.6.0/pointblank/R/action_levels.R | 71 pointblank-0.6.0/pointblank/R/all_passed.R | 21 pointblank-0.6.0/pointblank/R/col_exists.R | 42 pointblank-0.6.0/pointblank/R/col_is_character.R | 44 pointblank-0.6.0/pointblank/R/col_is_date.R | 46 pointblank-0.6.0/pointblank/R/col_is_factor.R | 46 pointblank-0.6.0/pointblank/R/col_is_integer.R | 46 pointblank-0.6.0/pointblank/R/col_is_logical.R | 46 pointblank-0.6.0/pointblank/R/col_is_numeric.R | 46 pointblank-0.6.0/pointblank/R/col_is_posix.R | 46 pointblank-0.6.0/pointblank/R/col_schema_match.R | 131 pointblank-0.6.0/pointblank/R/col_vals_between.R | 56 pointblank-0.6.0/pointblank/R/col_vals_equal.R | 46 pointblank-0.6.0/pointblank/R/col_vals_expr.R | 41 pointblank-0.6.0/pointblank/R/col_vals_gt.R | 70 pointblank-0.6.0/pointblank/R/col_vals_gte.R | 46 pointblank-0.6.0/pointblank/R/col_vals_in_set.R | 46 pointblank-0.6.0/pointblank/R/col_vals_lt.R | 46 pointblank-0.6.0/pointblank/R/col_vals_lte.R | 46 pointblank-0.6.0/pointblank/R/col_vals_not_between.R | 56 pointblank-0.6.0/pointblank/R/col_vals_not_equal.R | 50 pointblank-0.6.0/pointblank/R/col_vals_not_in_set.R | 50 pointblank-0.6.0/pointblank/R/col_vals_not_null.R | 50 pointblank-0.6.0/pointblank/R/col_vals_null.R | 46 pointblank-0.6.0/pointblank/R/col_vals_regex.R | 50 pointblank-0.6.0/pointblank/R/conjointly.R | 42 pointblank-0.6.0/pointblank/R/create_agent.R | 138 pointblank-0.6.0/pointblank/R/create_informant.R |only pointblank-0.6.0/pointblank/R/datasets.R | 32 pointblank-0.6.0/pointblank/R/db_tbl.R |only pointblank-0.6.0/pointblank/R/emailing.R | 288 - pointblank-0.6.0/pointblank/R/get_agent_report.R | 2036 ++++--- pointblank-0.6.0/pointblank/R/get_agent_x_list.R | 72 pointblank-0.6.0/pointblank/R/get_data_extracts.R | 21 pointblank-0.6.0/pointblank/R/get_informant_report.R |only pointblank-0.6.0/pointblank/R/get_sundered_data.R | 106 pointblank-0.6.0/pointblank/R/incorporate.R |only pointblank-0.6.0/pointblank/R/info_add.R |only pointblank-0.6.0/pointblank/R/interrogate.R | 905 ++- pointblank-0.6.0/pointblank/R/logging.R |only pointblank-0.6.0/pointblank/R/object_ops.R |only pointblank-0.6.0/pointblank/R/pipe.R | 19 pointblank-0.6.0/pointblank/R/print.R | 304 - pointblank-0.6.0/pointblank/R/reexports.R | 19 pointblank-0.6.0/pointblank/R/rows_distinct.R | 77 pointblank-0.6.0/pointblank/R/scan_data.R | 2752 +++++++++- pointblank-0.6.0/pointblank/R/steps_and_briefs.R | 125 pointblank-0.6.0/pointblank/R/utils.R | 508 + pointblank-0.6.0/pointblank/R/utils_translations.R | 41 pointblank-0.6.0/pointblank/R/validate_rmd.R | 151 pointblank-0.6.0/pointblank/R/yaml_read_agent.R |only pointblank-0.6.0/pointblank/R/yaml_read_informant.R |only pointblank-0.6.0/pointblank/R/yaml_write.R |only pointblank-0.6.0/pointblank/R/zzz.R | 29 pointblank-0.6.0/pointblank/README.md | 11 pointblank-0.6.0/pointblank/inst/agent-small_table.yml |only pointblank-0.6.0/pointblank/inst/img/function_icons/col_exists.svg |only pointblank-0.6.0/pointblank/inst/img/function_icons/col_is_character.svg |only pointblank-0.6.0/pointblank/inst/img/function_icons/col_is_date.svg |only pointblank-0.6.0/pointblank/inst/img/function_icons/col_is_factor.svg |only pointblank-0.6.0/pointblank/inst/img/function_icons/col_is_integer.svg |only pointblank-0.6.0/pointblank/inst/img/function_icons/col_is_logical.svg |only pointblank-0.6.0/pointblank/inst/img/function_icons/col_is_numeric.svg |only pointblank-0.6.0/pointblank/inst/img/function_icons/col_is_posix.svg |only pointblank-0.6.0/pointblank/inst/img/function_icons/col_schema_match.svg |only pointblank-0.6.0/pointblank/inst/img/function_icons/col_vals_between.svg |only pointblank-0.6.0/pointblank/inst/img/function_icons/col_vals_equal.svg |only pointblank-0.6.0/pointblank/inst/img/function_icons/col_vals_expr.svg |only pointblank-0.6.0/pointblank/inst/img/function_icons/col_vals_gt.svg |only pointblank-0.6.0/pointblank/inst/img/function_icons/col_vals_gte.svg |only pointblank-0.6.0/pointblank/inst/img/function_icons/col_vals_in_set.svg |only pointblank-0.6.0/pointblank/inst/img/function_icons/col_vals_lt.svg |only pointblank-0.6.0/pointblank/inst/img/function_icons/col_vals_lte.svg |only pointblank-0.6.0/pointblank/inst/img/function_icons/col_vals_not_between.svg |only pointblank-0.6.0/pointblank/inst/img/function_icons/col_vals_not_equal.svg |only pointblank-0.6.0/pointblank/inst/img/function_icons/col_vals_not_in_set.svg |only pointblank-0.6.0/pointblank/inst/img/function_icons/col_vals_not_null.svg |only pointblank-0.6.0/pointblank/inst/img/function_icons/col_vals_null.svg |only pointblank-0.6.0/pointblank/inst/img/function_icons/col_vals_regex.svg |only pointblank-0.6.0/pointblank/inst/img/function_icons/conjointly.svg |only pointblank-0.6.0/pointblank/inst/img/function_icons/rows_distinct.svg |only pointblank-0.6.0/pointblank/inst/informant-small_table.yml |only pointblank-0.6.0/pointblank/inst/pointblank-small_table.yml |only pointblank-0.6.0/pointblank/inst/text/translations_built |only pointblank-0.6.0/pointblank/inst/y.yml |only pointblank-0.6.0/pointblank/man/action_levels.Rd | 4 pointblank-0.6.0/pointblank/man/all_passed.Rd | 3 pointblank-0.6.0/pointblank/man/col_exists.Rd | 24 pointblank-0.6.0/pointblank/man/col_is_character.Rd | 24 pointblank-0.6.0/pointblank/man/col_is_date.Rd | 24 pointblank-0.6.0/pointblank/man/col_is_factor.Rd | 24 pointblank-0.6.0/pointblank/man/col_is_integer.Rd | 24 pointblank-0.6.0/pointblank/man/col_is_logical.Rd | 24 pointblank-0.6.0/pointblank/man/col_is_numeric.Rd | 24 pointblank-0.6.0/pointblank/man/col_is_posix.Rd | 24 pointblank-0.6.0/pointblank/man/col_schema.Rd | 4 pointblank-0.6.0/pointblank/man/col_schema_match.Rd | 74 pointblank-0.6.0/pointblank/man/col_vals_between.Rd | 24 pointblank-0.6.0/pointblank/man/col_vals_equal.Rd | 24 pointblank-0.6.0/pointblank/man/col_vals_expr.Rd | 24 pointblank-0.6.0/pointblank/man/col_vals_gt.Rd | 24 pointblank-0.6.0/pointblank/man/col_vals_gte.Rd | 24 pointblank-0.6.0/pointblank/man/col_vals_in_set.Rd | 24 pointblank-0.6.0/pointblank/man/col_vals_lt.Rd | 24 pointblank-0.6.0/pointblank/man/col_vals_lte.Rd | 24 pointblank-0.6.0/pointblank/man/col_vals_not_between.Rd | 24 pointblank-0.6.0/pointblank/man/col_vals_not_equal.Rd | 24 pointblank-0.6.0/pointblank/man/col_vals_not_in_set.Rd | 24 pointblank-0.6.0/pointblank/man/col_vals_not_null.Rd | 24 pointblank-0.6.0/pointblank/man/col_vals_null.Rd | 24 pointblank-0.6.0/pointblank/man/col_vals_regex.Rd | 24 pointblank-0.6.0/pointblank/man/conjointly.Rd | 24 pointblank-0.6.0/pointblank/man/create_agent.Rd | 84 pointblank-0.6.0/pointblank/man/create_informant.Rd |only pointblank-0.6.0/pointblank/man/db_tbl.Rd |only pointblank-0.6.0/pointblank/man/email_blast.Rd | 26 pointblank-0.6.0/pointblank/man/email_create.Rd |only pointblank-0.6.0/pointblank/man/figures |only pointblank-0.6.0/pointblank/man/get_agent_report.Rd | 34 pointblank-0.6.0/pointblank/man/get_agent_x_list.Rd | 15 pointblank-0.6.0/pointblank/man/get_data_extracts.Rd | 3 pointblank-0.6.0/pointblank/man/get_informant_report.Rd |only pointblank-0.6.0/pointblank/man/get_sundered_data.Rd | 26 pointblank-0.6.0/pointblank/man/incorporate.Rd |only pointblank-0.6.0/pointblank/man/info_columns.Rd |only pointblank-0.6.0/pointblank/man/info_section.Rd |only pointblank-0.6.0/pointblank/man/info_snippet.Rd |only pointblank-0.6.0/pointblank/man/info_tabular.Rd |only pointblank-0.6.0/pointblank/man/interrogate.Rd | 8 pointblank-0.6.0/pointblank/man/log4r_step.Rd |only pointblank-0.6.0/pointblank/man/print.action_levels.Rd |only pointblank-0.6.0/pointblank/man/print.ptblank_informant.Rd |only pointblank-0.6.0/pointblank/man/remove_read_fn.Rd | 35 pointblank-0.6.0/pointblank/man/remove_tbl.Rd | 39 pointblank-0.6.0/pointblank/man/rows_distinct.Rd | 24 pointblank-0.6.0/pointblank/man/scan_data.Rd | 56 pointblank-0.6.0/pointblank/man/set_read_fn.Rd | 49 pointblank-0.6.0/pointblank/man/set_tbl.Rd | 39 pointblank-0.6.0/pointblank/man/small_table.Rd | 5 pointblank-0.6.0/pointblank/man/small_table_sqlite.Rd | 2 pointblank-0.6.0/pointblank/man/snip_highest.Rd |only pointblank-0.6.0/pointblank/man/snip_list.Rd |only pointblank-0.6.0/pointblank/man/snip_lowest.Rd |only pointblank-0.6.0/pointblank/man/stock_msg_body.Rd | 9 pointblank-0.6.0/pointblank/man/stock_msg_footer.Rd | 10 pointblank-0.6.0/pointblank/man/validate_rmd.Rd | 4 pointblank-0.6.0/pointblank/man/x_read_disk.Rd |only pointblank-0.6.0/pointblank/man/x_write_disk.Rd |only pointblank-0.6.0/pointblank/man/yaml_agent_interrogate.Rd |only pointblank-0.6.0/pointblank/man/yaml_agent_show_exprs.Rd |only pointblank-0.6.0/pointblank/man/yaml_agent_string.Rd |only pointblank-0.6.0/pointblank/man/yaml_informant_incorporate.Rd |only pointblank-0.6.0/pointblank/man/yaml_read_agent.Rd |only pointblank-0.6.0/pointblank/man/yaml_read_informant.Rd |only pointblank-0.6.0/pointblank/man/yaml_write.Rd |only pointblank-0.6.0/pointblank/tests/testthat/aedes_aegypti_core_55_1d/SELECT-157f43.R | 4 pointblank-0.6.0/pointblank/tests/testthat/aedes_aegypti_core_55_1d/SELECT-2206a1.R | 4 pointblank-0.6.0/pointblank/tests/testthat/aedes_aegypti_core_55_1d/SELECT-291259.R | 4 pointblank-0.6.0/pointblank/tests/testthat/aedes_aegypti_core_55_1d/SELECT-2c7455.R | 4 pointblank-0.6.0/pointblank/tests/testthat/aedes_aegypti_core_55_1d/SELECT-3d6198.R | 4 pointblank-0.6.0/pointblank/tests/testthat/aedes_aegypti_core_55_1d/SELECT-4ac5bb.R | 4 pointblank-0.6.0/pointblank/tests/testthat/aedes_aegypti_core_55_1d/SELECT-5bdab7.R | 4 pointblank-0.6.0/pointblank/tests/testthat/aedes_aegypti_core_55_1d/SELECT-618d82.R | 4 pointblank-0.6.0/pointblank/tests/testthat/aedes_aegypti_core_55_1d/SELECT-654cbc.R | 4 pointblank-0.6.0/pointblank/tests/testthat/aedes_aegypti_core_55_1d/SELECT-78b447.R | 4 pointblank-0.6.0/pointblank/tests/testthat/aedes_aegypti_core_55_1d/SELECT-7d21bb.R | 4 pointblank-0.6.0/pointblank/tests/testthat/aedes_aegypti_core_55_1d/SELECT-7e17c5.R | 7 pointblank-0.6.0/pointblank/tests/testthat/aedes_aegypti_core_55_1d/SELECT-7e4f26.R | 4 pointblank-0.6.0/pointblank/tests/testthat/aedes_aegypti_core_55_1d/SELECT-810260.R | 4 pointblank-0.6.0/pointblank/tests/testthat/aedes_aegypti_core_55_1d/SELECT-96da26.R | 4 pointblank-0.6.0/pointblank/tests/testthat/aedes_aegypti_core_55_1d/SELECT-aa9e69.R | 4 pointblank-0.6.0/pointblank/tests/testthat/aedes_aegypti_core_55_1d/SELECT-bdf6ba.R | 4 pointblank-0.6.0/pointblank/tests/testthat/aedes_aegypti_core_55_1d/SELECT-c7c343.R | 4 pointblank-0.6.0/pointblank/tests/testthat/aedes_aegypti_core_55_1d/SELECT-ce9e51.R | 4 pointblank-0.6.0/pointblank/tests/testthat/aedes_aegypti_core_55_1d/SELECT-d2c8ee.R | 4 pointblank-0.6.0/pointblank/tests/testthat/aedes_aegypti_core_55_1d/SELECT-d7928f.R | 4 pointblank-0.6.0/pointblank/tests/testthat/aedes_aegypti_core_55_1d/SELECT-e9a89a.R | 3 pointblank-0.6.0/pointblank/tests/testthat/aedes_aegypti_core_55_1d/SELECT-eb0305.R | 4 pointblank-0.6.0/pointblank/tests/testthat/aedes_aegypti_core_55_1d/SELECT-ee52cf.R | 4 pointblank-0.6.0/pointblank/tests/testthat/aedes_aegypti_core_55_1d/SELECT-eef701.R | 4 pointblank-0.6.0/pointblank/tests/testthat/aedes_aegypti_core_55_1d/SELECT-f298bd.R | 4 pointblank-0.6.0/pointblank/tests/testthat/aedes_aegypti_core_55_1d/conInfo-.R | 3 pointblank-0.6.0/pointblank/tests/testthat/aedes_aegypti_core_55_1d/dbListTables.R | 3 pointblank-0.6.0/pointblank/tests/testthat/mysql-2.R | 20 pointblank-0.6.0/pointblank/tests/testthat/mysql.R | 56 pointblank-0.6.0/pointblank/tests/testthat/test-action_levels.R | 28 pointblank-0.6.0/pointblank/tests/testthat/test-col_schema.R | 27 pointblank-0.6.0/pointblank/tests/testthat/test-create_agent.R | 98 pointblank-0.6.0/pointblank/tests/testthat/test-create_informant.R |only pointblank-0.6.0/pointblank/tests/testthat/test-create_validation_steps.R | 2 pointblank-0.6.0/pointblank/tests/testthat/test-expectation_fns.R | 1 pointblank-0.6.0/pointblank/tests/testthat/test-get_agent_report.R |only pointblank-0.6.0/pointblank/tests/testthat/test-get_data_extracts.R | 2 pointblank-0.6.0/pointblank/tests/testthat/test-get_informant_report.R |only pointblank-0.6.0/pointblank/tests/testthat/test-incorporate_with_informant.R |only pointblank-0.6.0/pointblank/tests/testthat/test-interrogate_conjointly.R | 72 pointblank-0.6.0/pointblank/tests/testthat/test-interrogate_simple.R | 291 - pointblank-0.6.0/pointblank/tests/testthat/test-interrogate_with_agent.R | 2 pointblank-0.6.0/pointblank/tests/testthat/test-interrogate_with_agent_db.R | 81 pointblank-0.6.0/pointblank/tests/testthat/test-object_ops.R |only pointblank-0.6.0/pointblank/tests/testthat/test-postgres-2.R | 1 pointblank-0.6.0/pointblank/tests/testthat/test-postgres.R | 7 pointblank-0.6.0/pointblank/tests/testthat/test-scan_data.R |only pointblank-0.6.0/pointblank/tests/testthat/test-schema.R |only pointblank-0.6.0/pointblank/tests/testthat/test-snip_fns.R |only pointblank-0.6.0/pointblank/tests/testthat/test-sundering.R | 161 pointblank-0.6.0/pointblank/tests/testthat/test-test_fns.R | 53 pointblank-0.6.0/pointblank/tests/testthat/test-util_functions.R | 296 + pointblank-0.6.0/pointblank/tests/testthat/test-x_list.R | 94 pointblank-0.6.0/pointblank/tests/testthat/test-yaml.R | 38 pointblank-0.6.0/pointblank/tests/testthat/test-yaml_read_informant.R |only pointblank-0.6.0/pointblank/tests/testthat/test_table.csv |only pointblank-0.6.0/pointblank/tests/testthat/test_table_2.csv |only pointblank-0.6.0/pointblank/tests/testthat/tests/testthat/dbo/SELECT-10608c.R | 4 pointblank-0.6.0/pointblank/tests/testthat/tests/testthat/dbo/SELECT-201100.R | 4 pointblank-0.6.0/pointblank/tests/testthat/tests/testthat/dbo/SELECT-616e99.R | 19 pointblank-0.6.0/pointblank/tests/testthat/tests/testthat/dbo/SELECT-b26d98.R | 19 pointblank-0.6.0/pointblank/tests/testthat/tests/testthat/dbo/SELECT-ebcca4.R | 7 pointblank-0.6.0/pointblank/tests/testthat/tests/testthat/dbo/SELECT-f165ce.R | 4 pointblank-0.6.0/pointblank/tests/testthat/tests/testthat/dbo/dbListTables.R | 199 pointblank-0.6.0/pointblank/tests/testthat/trade_statistics/SELECT-07f6cc.R | 4 pointblank-0.6.0/pointblank/tests/testthat/trade_statistics/SELECT-0ce13b.R | 4 pointblank-0.6.0/pointblank/tests/testthat/trade_statistics/SELECT-1486f4.R | 4 pointblank-0.6.0/pointblank/tests/testthat/trade_statistics/SELECT-923e41.R | 4 pointblank-0.6.0/pointblank/tests/testthat/trade_statistics/conInfo-.R | 4 pointblank-0.6.0/pointblank/tests/testthat/trade_statistics/dbListTables.R | 2 250 files changed, 9824 insertions(+), 2507 deletions(-)
Title: Coloured Formatting for Columns
Description: Provides 'pillar' and 'colonnade' generics designed
for formatting columns of data using the full range of colours
provided by modern terminals.
Author: Kirill Müller [aut, cre],
Hadley Wickham [aut],
RStudio [cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between pillar versions 1.4.6 dated 2020-07-10 and 1.4.7 dated 2020-11-20
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 5 +++++ README.md | 4 ++-- tests/testthat/test-format_character.R | 3 ++- 5 files changed, 16 insertions(+), 10 deletions(-)
Title: 'Microsoft Academic' API Client
Description: The 'Microsoft Academic Knowledge' API provides programmatic access
to scholarly articles in the 'Microsoft Academic Graph'
(<https://academic.microsoft.com/>). Includes methods matching all 'Microsoft
Academic' API routes, including search, graph search, text similarity, and
interpret natural language query string.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
Christopher Baker [aut],
rOpenSci [fnd] (https://ropensci.org)
Maintainer: Scott Chamberlain <myrmecocystus+r@gmail.com>
Diff between microdemic versions 0.5.0 dated 2020-01-27 and 0.6.0 dated 2020-11-20
microdemic-0.5.0/microdemic/README.md |only microdemic-0.5.0/microdemic/man/ma_graph_search.Rd |only microdemic-0.5.0/microdemic/man/ma_similarity.Rd |only microdemic-0.5.0/microdemic/tests/fixtures/ma_similarity.yml |only microdemic-0.5.0/microdemic/tests/testthat/test-graph_search.R |only microdemic-0.5.0/microdemic/tests/testthat/test-similarity.R |only microdemic-0.6.0/microdemic/DESCRIPTION | 10 - microdemic-0.6.0/microdemic/LICENSE | 2 microdemic-0.6.0/microdemic/MD5 | 58 ++++------ microdemic-0.6.0/microdemic/NEWS.md | 16 ++ microdemic-0.6.0/microdemic/R/abstract.R | 26 ++-- microdemic-0.6.0/microdemic/R/calchistogram.R | 2 microdemic-0.6.0/microdemic/R/evaluate.R | 6 - microdemic-0.6.0/microdemic/R/graph_search.R | 43 +------ microdemic-0.6.0/microdemic/R/interpret.R | 2 microdemic-0.6.0/microdemic/R/microdemic-package.R | 15 +- microdemic-0.6.0/microdemic/R/search.R | 8 - microdemic-0.6.0/microdemic/R/similarity.R | 50 +------- microdemic-0.6.0/microdemic/R/zzz.R | 4 microdemic-0.6.0/microdemic/man/ma_abstract.Rd | 4 microdemic-0.6.0/microdemic/man/ma_calchist.Rd | 4 microdemic-0.6.0/microdemic/man/ma_evaluate.Rd | 6 - microdemic-0.6.0/microdemic/man/ma_graph_search-defunct.Rd |only microdemic-0.6.0/microdemic/man/ma_interpret.Rd | 2 microdemic-0.6.0/microdemic/man/ma_search.Rd | 10 - microdemic-0.6.0/microdemic/man/ma_similarity-defunct.Rd |only microdemic-0.6.0/microdemic/man/microdemic-package.Rd | 13 -- microdemic-0.6.0/microdemic/tests/fixtures/ma_abstract.yml | 18 +-- microdemic-0.6.0/microdemic/tests/fixtures/ma_abstract_no_NAs.yml | 18 +-- microdemic-0.6.0/microdemic/tests/fixtures/ma_evaluate.yml | 18 +-- microdemic-0.6.0/microdemic/tests/fixtures/ma_search.yml | 18 +-- microdemic-0.6.0/microdemic/tests/testthat/test-abstract.R | 2 microdemic-0.6.0/microdemic/tests/testthat/test-evaluate.R | 4 microdemic-0.6.0/microdemic/tests/testthat/test-search.R | 7 - 34 files changed, 148 insertions(+), 218 deletions(-)
Title: Model for Semisupervised Text Analysis Based on Word Embeddings
Description: A word embeddings-based semisupervised models for document scaling Watanabe (2020) <doi:10.1080/19312458.2020.1832976>.
LSS allows users to analyze large and complex corpora on arbitrary dimensions with seed words exploiting efficiency of word embeddings (SVD, Glove).
Author: Kohei Watanabe [aut, cre, cph]
Maintainer: Kohei Watanabe <watanabe.kohei@gmail.com>
Diff between LSX versions 0.9.4 dated 2020-11-02 and 0.9.5 dated 2020-11-20
LSX-0.9.4/LSX/man/discrimination.Rd |only LSX-0.9.4/LSX/man/divergence.Rd |only LSX-0.9.5/LSX/DESCRIPTION | 8 +- LSX-0.9.5/LSX/MD5 | 21 +++--- LSX-0.9.5/LSX/NAMESPACE | 2 LSX-0.9.5/LSX/NEWS.md | 1 LSX-0.9.5/LSX/R/textmodel.R | 89 -------------------------- LSX-0.9.5/LSX/R/textplot.R | 39 ----------- LSX-0.9.5/LSX/R/textstat.R |only LSX-0.9.5/LSX/R/utils.R | 40 ----------- LSX-0.9.5/LSX/man/strength.Rd |only LSX-0.9.5/LSX/man/textstat_context.Rd | 24 ++++++- LSX-0.9.5/LSX/tests/testthat/test-textmodel.R | 15 ---- LSX-0.9.5/LSX/tests/testthat/test-textstat.R |only 14 files changed, 40 insertions(+), 199 deletions(-)
Title: Finding Rhythmic and Non-Rhythmic Trends in Multi-Omics Data
(MOSAIC)
Description: Provides a function (mosaic_find()) designed to find rhythmic
and non-rhythmic trends in multi-omics time course data using model
selection and joint modeling, a method called MOSAIC (Multi-Omics
Selection with Amplitude Independent Criteria). For more information,
see H. De los Santos et al. (2020) <doi:10.1093/bioinformatics/btaa877>.
Author: Hannah De los Santos [aut, cph],
Kristin Bennett [aut],
Jennifer Hurley [aut, cre],
R Development Core Team [aut]
Maintainer: Jennifer Hurley <hurlej2@rpi.edu>
Diff between mosaic.find versions 0.1.1 dated 2020-06-10 and 0.1.2 dated 2020-11-20
DESCRIPTION | 8 MD5 | 6 inst/CITATION | 18 - inst/doc/mosaic-vignette.html | 490 +++++++++++++++++++++--------------------- 4 files changed, 264 insertions(+), 258 deletions(-)
Title: Identification and Classification of the Most Influential Nodes
Description: Contains functions for the classification and ranking of top candidate features, reconstruction of networks from
adjacency matrices and data frames, analysis of the topology of the network
and calculation of centrality measures, and identification of the most
influential nodes. Also, a function is provided for running SIRIR model, which
is the combination of leave-one-out cross validation technique and the conventional SIR model, on a network to unsupervisedly rank the true influence of vertices. Additionally, some functions have been provided for the assessment
of dependence and correlation of two network centrality measures as well as
the conditional probability of deviation from their corresponding means in opposite direction.
Fred Viole and David Nawrocki (2013, ISBN:1490523995).
Csardi G, Nepusz T (2006). "The igraph software package for complex network research." InterJournal, Complex Systems, 1695.
Adopted algorithms and sources are referenced in function document.
Author: Adrian (Abbas) Salavaty [aut, cre], Mirana Ramialison [ths], Peter D. Currie [ths]
Maintainer: Adrian Salavaty <abbas.salavaty@gmail.com>
Diff between influential versions 2.0.0 dated 2020-09-25 and 2.0.1 dated 2020-11-20
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 25 +++++++++++++++---------- R/functions.R | 15 +++++++++++++-- inst/doc/Vignettes.Rmd | 4 +--- inst/doc/Vignettes.html | 6 +++--- man/influential-package.Rd | 4 ++-- vignettes/Vignettes.Rmd | 4 +--- 8 files changed, 45 insertions(+), 33 deletions(-)