Title: Manage Competition Results
Description: Tools for storing and managing competition results.
Competition is understood as a set of games in which players gain some
abstract scores. There are two ways for storing results: in long (one
row per game-player) and wide (one row per game with fixed amount of
players) formats. This package provides functions for creation and
conversion between them. Also there are functions for computing their
summary and Head-to-Head values for players. They leverage grammar of
data manipulation from 'dplyr'.
Author: Evgeni Chasnovski [aut, cre] (<https://orcid.org/0000-0002-1617-4019>)
Maintainer: Evgeni Chasnovski <evgeni.chasnovski@gmail.com>
Diff between comperes versions 0.2.4 dated 2020-05-09 and 0.2.5 dated 2020-11-23
DESCRIPTION | 13 MD5 | 78 +- NEWS.md | 4 R/comperes-package.R | 2 R/head-to-head.R | 14 R/item-summary.R | 3 R/outer-methods.R | 4 R/pair-value-data.R | 4 R/pairgames.R | 1 R/results-longcr.R | 16 R/results-widecr.R | 26 R/utils-pipe.R | 2 R/utils.R | 8 R/zzz.R | 4 README.md | 73 +- build/vignette.rds |binary inst/doc/formats.html | 702 ++++++++++-------------- inst/doc/manipulation.html | 961 +++++++++++++++------------------- man/comperes-package.Rd | 6 man/convert-pair-value.Rd | 1 man/get_matchups.Rd | 1 man/h2h_funs.Rd | 5 man/h2h_long.Rd | 1 man/h2h_mat.Rd | 1 man/item-summary-join.Rd | 3 man/item-summary.Rd | 1 man/levels2.Rd | 1 man/longcr.Rd | 1 man/pairgames.Rd | 1 man/pipe.Rd | 2 man/summary_funs.Rd | 5 man/widecr.Rd | 3 tests/testthat/test-head-to-head.R | 21 tests/testthat/test-item-summary.R | 24 tests/testthat/test-outer-methods.R | 28 tests/testthat/test-pair-value-data.R | 16 tests/testthat/test-pairgames.R | 4 tests/testthat/test-results-longcr.R | 118 ++-- tests/testthat/test-results-widecr.R | 129 +++- tests/testthat/test-utils.R | 36 - 40 files changed, 1157 insertions(+), 1166 deletions(-)
Title: Calculate Second-Generation p-Values and Associated Measures
Description: Computation of second-generation p-values as described in Blume et al. (2018) <doi:10.1371/journal.pone.0188299> and Blume et al. (2019) <doi:10.1080/00031305.2018.1537893>. There are additional functions which provide power and type I error calculations, create graphs (particularly suited for large-scale inference usage), and a function to estimate false discovery rates based on second-generation p-value inference.
Author: Valerie Welty [aut, cre],
Rebecca Irlmeier [aut],
Thomas Stewart [aut],
Robert Greevy, Jr. [aut],
Lucy D'Agostino McGowan [aut],
Jeffrey Blume [aut]
Maintainer: Valerie Welty <valerie.welty@vanderbilt.edu>
Diff between sgpv versions 1.0.0 dated 2020-07-06 and 1.1.0 dated 2020-11-23
DESCRIPTION | 10 ++++++---- MD5 | 14 +++++++++----- NAMESPACE | 7 +++++++ R/fdrisk.R | 2 +- R/plotman.R |only R/plotsgpower.R |only README.md | 15 ++++++++++++--- man/fdrisk.Rd | 2 +- man/plotman.Rd |only man/plotsgpower.Rd |only 10 files changed, 36 insertions(+), 14 deletions(-)
Title: High Performance Algorithms for Vine Copula Modeling
Description: Provides an interface to 'vinecopulib', a C++ library for vine
copula modeling. The 'rvinecopulib' package implements the core features of the
popular 'VineCopula' package, in particular inference algorithms for both vine
copula and bivariate copula models. Advantages over 'VineCopula' are a sleeker
and more modern API, improved performances, especially in high dimensions,
nonparametric and multi-parameter families, and the ability to model discrete
variables. The 'rvinecopulib' package includes 'vinecopulib' as header-only
C++ library (currently version 0.5.5). Thus users do not need to install
'vinecopulib' itself in order to use 'rvinecopulib'. Since their initial
releases, 'vinecopulib' is licensed under the MIT License, and 'rvinecopulib'
is licensed under the GNU GPL version 3.
Author: Thomas Nagler [aut, cre],
Thibault Vatter [aut]
Maintainer: Thomas Nagler <info@vinecopulib.org>
Diff between rvinecopulib versions 0.5.4.1.0 dated 2020-10-03 and 0.5.5.1.0 dated 2020-11-23
DESCRIPTION | 8 +- MD5 | 22 ++--- NEWS.md | 19 +++++ R/rvinecopulib.R | 2 inst/include/vinecopulib/bicop/class.hpp | 2 inst/include/vinecopulib/bicop/implementation/bb7.ipp | 12 +-- inst/include/vinecopulib/bicop/implementation/class.ipp | 13 ++- inst/include/vinecopulib/vinecop/implementation/class.ipp | 2 inst/include/vinecopulib/vinecop/implementation/fit_controls.ipp | 6 - inst/include/vinecopulib/vinecop/implementation/tools_select.ipp | 37 +++------- man/rvinecopulib.Rd | 2 tests/testthat/Rplots.pdf |binary 12 files changed, 66 insertions(+), 59 deletions(-)
Title: MCMC, Particle Filtering, and Programmable Hierarchical Modeling
Description: A system for writing hierarchical statistical models largely
compatible with 'BUGS' and 'JAGS', writing nimbleFunctions to operate models
and do basic R-style math, and compiling both models and nimbleFunctions via
custom-generated C++. 'NIMBLE' includes default methods for MCMC, Monte Carlo
Expectation Maximization, and some other tools. The nimbleFunction system makes
it easy to do things like implement new MCMC samplers from R, customize the
assignment of samplers to different parts of a model from R, and compile the
new samplers automatically via C++ alongside the samplers 'NIMBLE' provides.
'NIMBLE' extends the 'BUGS'/'JAGS' language by making it extensible: New
distributions and functions can be added, including as calls to external
compiled code. Although most people think of MCMC as the main goal of the
'BUGS'/'JAGS' language for writing models, one can use 'NIMBLE' for writing
arbitrary other kinds of model-generic algorithms as well. A full User Manual is
available at <https://r-nimble.org>.
Author: Perry de Valpine [aut],
Christopher Paciorek [aut, cre],
Daniel Turek [aut],
Nick Michaud [aut],
Cliff Anderson-Bergman [aut],
Fritz Obermeyer [aut],
Claudia Wehrhahn Cortes [aut] (Bayesian nonparametrics system),
Abel Rodrìguez [aut] (Bayesian nonparametrics system),
Duncan Temple Lang [aut] (packaging configuration),
Sally Paganin [aut] (reversible jump MCMC),
Jagadish Babu [ctb] (code for the compilation system for an early
version of NIMBLE),
Lauren Ponisio [ctb] (contributions to the cross-validation code),
Peter Sujan [ctb] (multivariate t distribution code)
Maintainer: Christopher Paciorek <paciorek@stat.berkeley.edu>
Diff between nimble versions 0.10.0 dated 2020-10-10 and 0.10.1 dated 2020-11-23
nimble-0.10.0/nimble/man/samplerAssignmentRules-class.Rd |only nimble-0.10.1/nimble/DESCRIPTION | 8 nimble-0.10.1/nimble/INSTALL | 6 nimble-0.10.1/nimble/MD5 | 52 - nimble-0.10.1/nimble/NAMESPACE | 3 nimble-0.10.1/nimble/R/BNP_samplers.R | 26 nimble-0.10.1/nimble/R/BUGS_model.R | 30 + nimble-0.10.1/nimble/R/BUGS_readBUGS.R | 2 nimble-0.10.1/nimble/R/MCMC_autoBlock.R | 3 nimble-0.10.1/nimble/R/MCMC_build.R | 48 - nimble-0.10.1/nimble/R/MCMC_configuration.R | 394 ++------------ nimble-0.10.1/nimble/R/MCMC_utils.R | 43 + nimble-0.10.1/nimble/R/nimbleFunction_Rexecution.R | 11 nimble-0.10.1/nimble/R/nimbleFunction_keywordProcessing.R | 7 nimble-0.10.1/nimble/R/options.R | 5 nimble-0.10.1/nimble/inst/NEWS | 20 nimble-0.10.1/nimble/inst/tests/mcmcTestLog_Correct.Rout | 12 nimble-0.10.1/nimble/inst/tests/test-getDependencies.R | 33 + nimble-0.10.1/nimble/inst/tests/test-getParam.R | 117 ++++ nimble-0.10.1/nimble/inst/tests/test-mcmc.R | 53 + nimble-0.10.1/nimble/inst/tests/test-waic.R | 50 - nimble-0.10.1/nimble/man/MCMCconf-class.Rd | 2 nimble-0.10.1/nimble/man/autoBlock.Rd | 4 nimble-0.10.1/nimble/man/buildMCMC.Rd | 42 - nimble-0.10.1/nimble/man/configureMCMC.Rd | 7 nimble-0.10.1/nimble/man/makeParamInfo.Rd | 4 nimble-0.10.1/nimble/man/modelInitialization.Rd |only nimble-0.10.1/nimble/man/nimble-internal.Rd | 49 + 28 files changed, 538 insertions(+), 493 deletions(-)
Title: Coloring Wildlife Distributions in Space-Time
Description: Color and visualize wildlife distributions in
space-time using raster data. In addition to enabling display of
sequential change in distributions through the use of small multiples,
'colorist' provides functions for extracting several features of
interest from a sequence of distributions and for visualizing those
features using HCL (hue-chroma-luminance) color palettes. Resulting
maps allow for "fair" visual comparison of intensity values (e.g.,
occurrence, abundance, or density) across space and time and can be
used to address questions about where, when, and how consistently a
species, group, or individual is likely to be found.
Author: Justin Schuetz [aut] (<https://orcid.org/0000-0002-6163-538X>),
Matthew Strimas-Mackey [aut, cre]
(<https://orcid.org/0000-0001-8929-7776>),
Tom Auer [aut] (<https://orcid.org/0000-0001-8619-7147>)
Maintainer: Matthew Strimas-Mackey <mes335@cornell.edu>
Diff between colorist versions 0.1.1 dated 2020-08-13 and 0.1.2 dated 2020-11-23
DESCRIPTION | 11 MD5 | 44 ++- NEWS.md | 6 R/legend.R | 173 +++++++++----- R/map.R | 94 ++++++- R/palette.R | 12 - README.md | 15 - build/vignette.rds |binary inst/doc/introduction.R | 1 inst/doc/introduction.Rmd | 11 inst/doc/introduction.html | 382 ++++++++++++++++++-------------- inst/doc/mapping.R |only inst/doc/mapping.Rmd |only inst/doc/mapping.html |only inst/doc/tuning.Rmd | 2 inst/doc/tuning.html | 207 +++++++++++------ man/legend_set.Rd | 25 +- man/legend_timecycle.Rd | 12 + man/legend_timeline.Rd | 16 + man/map_multiples.Rd | 23 + man/map_single.Rd | 41 ++- vignettes/introduction.Rmd | 11 vignettes/mapping.Rmd |only vignettes/qgis-screenshot-default.png |only vignettes/qgis-screenshot-symbology.png |only vignettes/tuning.Rmd | 2 26 files changed, 715 insertions(+), 373 deletions(-)
Title: Cross-Platform Perl Based R Function to Create Excel 2003 (XLS)
and Excel 2007 (XLSX) Files
Description: Cross-platform Perl based R function to create Excel 2003 (XLS) and Excel 2007 (XLSX)
files from one or more data frames. Each data frame will be
written to a separate named worksheet in the Excel spreadsheet.
The worksheet name will be the name of the data frame it contains
or can be specified by the user.
Author: Marc Schwartz <marc_schwartz@me.com> and various authors for Perl modules listed in each .pm file.
Maintainer: Marc Schwartz <marc_schwartz@me.com>
Diff between WriteXLS versions 6.0.0 dated 2020-10-17 and 6.1.0 dated 2020-11-23
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- inst/Perl/WriteXLS.pl | 35 ++++++++++++++++++++++++++++------- inst/Perl/WriteXLSX.pl | 33 +++++++++++++++++++++++++++------ man/WriteXLS.Rd | 9 ++++----- 5 files changed, 67 insertions(+), 26 deletions(-)
Title: Create Useful Summaries of the Portal Data
Description: Download and generate summaries for the rodent,
plant, ant, and weather data from the Portal Project. Portal is a
long-term (and ongoing) experimental monitoring site in the Chihuahua
desert. The raw data files can be found at
<https://github.com/weecology/portaldata>.
Author: Glenda M. Yenni [aut, cre] (<https://orcid.org/0000-0001-6969-1848>),
Hao Ye [aut] (<https://orcid.org/0000-0002-8630-1458>),
Erica M. Christensen [aut] (<https://orcid.org/0000-0002-5635-2502>),
Juniper L. Simonis [aut] (<https://orcid.org/0000-0001-9798-0460>),
Ellen K. Bledsoe [aut] (<https://orcid.org/0000-0002-3629-7235>),
Renata M. Diaz [aut] (<https://orcid.org/0000-0003-0803-4734>),
Shawn D. Taylor [aut] (<https://orcid.org/0000-0002-6178-6903>),
Ethan P, White [aut] (<https://orcid.org/0000-0001-6728-7745>),
S.K. Morgan Ernest [aut] (<https://orcid.org/0000-0002-6026-8530>),
Weecology [cph]
Maintainer: Glenda M. Yenni <glenda@weecology.org>
Diff between portalr versions 0.3.5 dated 2020-08-28 and 0.3.6 dated 2020-11-23
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/load_data.R | 8 ++++++-- README.md | 1 + inst/doc/portal_researcher_examples.html | 4 ++-- inst/doc/rodent-abundance-demo.html | 12 ++++++------ tests/testthat/test-01-data-retrieval.R | 1 + 7 files changed, 25 insertions(+), 19 deletions(-)
Title: Area Correction Methods
Description: Post-construction fatality monitoring studies at wind facilities are based on data from searches for bird and bat carcasses in plots beneath turbines. Bird and bat carcasses can fall outside of the search plot. Bird and bat carcasses from wind turbines often fall outside of the searched area. To compensate, area correction (AC) estimations are calculated to estimate the percentage of fatalities that fall within the searched area versus those that fall outside of it. This package provides two likelihood based methods and one physics based method (Hull and Muir (2010) <doi:10.1080/14486563.2010.9725253>, Huso and Dalthorp (2014) <doi:10.1002/jwmg.663>) to estimate the carcass fall distribution. There are also functions for calculating the proportion of area searched within one unit annuli, log logistic distribution functions, and truncated distribution functions.
Author: Jared Studyvin [aut, cre],
Paul Rabie [aut],
Daniel Riser-Espinoza [aut],
Trent McDonald [ctb]
Maintainer: Jared Studyvin <jstudyvin@west-inc.com>
Diff between windAC versions 1.2.3 dated 2020-11-05 and 1.2.4 dated 2020-11-23
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/getProportionAreaSearched.R | 18 ++++++++++-------- R/getStartValue.R | 5 +++-- man/getStartValue.Rd | 2 +- 5 files changed, 22 insertions(+), 19 deletions(-)
Title: Change-in-Slope OP Algorithm with a Finite Number of States
Description: Optimal partitioning algorithm for change-in-slope problem with continuity constraint and a finite number of states. Some constraints can be enforced in the inference: isotonic, unimodal or smoothing. With the function slopeSN() (segment neighborhood) the number of segments to infer is fixed by the user and does not depend on a penalty value.
Author: Vincent Runge [aut, cre],
Marco Pascucci [aut]
Maintainer: Vincent Runge <vincent.runge@univ-evry.fr>
Diff between slopeOP versions 1.0.0 dated 2020-11-20 and 1.0.1 dated 2020-11-23
DESCRIPTION | 6 +++--- MD5 | 6 +++--- src/OmegaOP.cpp | 18 +++++++++--------- src/OmegaSN.cpp | 26 +++++++++++++------------- 4 files changed, 28 insertions(+), 28 deletions(-)
Title: Mixture and Composite Distributions
Description: A flexible computational framework for mixture distributions with the focus on the composite models.
Author: Lukas Sablica [aut, cre] (<https://orcid.org/0000-0001-9166-4563>),
Kurt Hornik [aut] (<https://orcid.org/0000-0003-4198-9911>)
Maintainer: Lukas Sablica <lsablica@wu.ac.at>
Diff between mistr versions 0.0.3 dated 2020-02-04 and 0.0.4 dated 2020-11-23
DESCRIPTION | 8 MD5 | 48 ++-- NEWS.md | 6 build/vignette.rds |binary inst/CITATION | 9 inst/doc/mistr-extensions.R | 24 +- inst/doc/mistr-extensions.pdf |binary inst/doc/mistr-introduction.R | 40 ++-- inst/doc/mistr-introduction.pdf |binary man/Frechet.Rd | 6 man/GNG_fit.Rd | 11 - man/GPD.Rd | 6 man/PNP_fit.Rd | 7 man/QQplot.Rd | 53 ++++- man/QQplotgg.Rd | 58 ++++- man/autoggplot_comp_fit.Rd | 10 - man/compdist.Rd | 6 man/mistr_theme.Rd | 3 man/new_dist.Rd | 13 - man/plot_comp_fit.Rd | 10 - man/plotgg.Rd | 397 ++++++++++++++++++++++++++++++---------- man/q.default.Rd | 12 + man/risk.Rd | 33 ++- man/summary.Rd | 18 - man/trafo.Rd | 3 25 files changed, 552 insertions(+), 229 deletions(-)
Title: Interface Between GMT Map-Making Software and R
Description: Interface between the GMT map-making software and R, enabling the
user to manipulate geographic data within R and call GMT commands to draw and
annotate maps in postscript format. The gmt package is about interactive data
analysis, rapidly visualizing subsets and summaries of geographic data, while
performing statistical analysis in the R console.
Author: Arni Magnusson [aut, cre]
Maintainer: Arni Magnusson <thisisarni@gmail.com>
Diff between gmt versions 2.0-1 dated 2017-09-11 and 2.0.2 dated 2020-11-23
gmt-2.0-1/gmt/README.md |only gmt-2.0-1/gmt/data/demo.bar.rda |only gmt-2.0-1/gmt/data/demo.coast.rda |only gmt-2.0-1/gmt/data/demo.par.rda |only gmt-2.0-1/gmt/data/demo.text.rda |only gmt-2.0-1/gmt/data/demo.xy.rda |only gmt-2.0.2/gmt/DESCRIPTION | 17 ++++++++--------- gmt-2.0.2/gmt/MD5 | 21 ++++++++++----------- gmt-2.0.2/gmt/NEWS | 24 ++++++++---------------- gmt-2.0.2/gmt/data/demo.bar.R |only gmt-2.0.2/gmt/data/demo.coast.R |only gmt-2.0.2/gmt/data/demo.par.R |only gmt-2.0.2/gmt/data/demo.text.R |only gmt-2.0.2/gmt/data/demo.xy.R |only gmt-2.0.2/gmt/man/gmt-package.Rd | 4 ++-- gmt-2.0.2/gmt/man/gmt.Rd | 2 +- gmt-2.0.2/gmt/man/gmt.system.Rd | 2 +- 17 files changed, 30 insertions(+), 40 deletions(-)
Title: Collective Matrix Factorization for Recommender Systems
Description: Collective matrix factorization (a.k.a. multi-view or multi-way factorization,
Singh, Gordon, (2008) <doi:10.1145/1401890.1401969>) tries to approximate a matrix 'X' as the
product of two low-dimensional matrices aided with secondary information matrices about rows
and/or columns of 'X' which are also factorized using the same latent components.
The intended usage is for recommender systems, dimensionality reduction, and missing value imputation.
Implements extensions of the original model (Cortes, (2018) <arXiv:1809.00366>) and can produce
different factorizations such as the weighted 'implicit-feedback' model (Hu, Koren, Volinsky,
(2008) <doi:10.1109/ICDM.2008.22>) or the enhanced model with 'implicit features' (Rendle, Zhang,
Koren, (2019) <arXiv:1905.01395>), with or without side information. Can use gradient-based
procedures or alternating-least squares procedures (Koren, Bell, Volinsky, (2009)
<doi:10.1109/MC.2009.263>), with either a Cholesky solver, a faster conjugate gradient solver
(Takacs, Pilaszy, Tikk, (2011) <doi:10.1145/2043932.2043987>), or a non-negative
coordinate descent solver (Franc, Hlavac, Navara, (2005) <doi:10.1007/11556121_50>),
providing efficient methods for sparse and dense data, and mixtures thereof.
Offers alternative most-popular and content-based models, and implements functionality
for cold-start recommendations and imputation of 2D data.
Author: David Cortes [aut, cre, cph], Jorge Nocedal [cph], Naoaki Okazaki [cph]
Maintainer: David Cortes <david.cortes.rivera@gmail.com>
Diff between cmfrec versions 2.3.0 dated 2020-11-23 and 2.3.2 dated 2020-11-23
DESCRIPTION | 8 +++---- MD5 | 14 ++++++------ R/impute.R | 2 - R/other.R | 2 + man/imputeX.Rd | 2 - man/swap.users.and.items.Rd | 2 + src/collective.c | 48 ++++++++++++++++++++++++++++++++------------ src/common.c | 21 +++++++++++++++---- 8 files changed, 69 insertions(+), 30 deletions(-)
Title: Statistical Catch-at-Age Plotting Environment
Description: Import, plot, and diagnose results from statistical
catch-at-age models, used in fisheries stock assessment.
Author: Arni Magnusson [aut, cre]
Maintainer: Arni Magnusson <thisisarni@gmail.com>
Diff between scape versions 2.3-2 dated 2018-05-01 and 2.3.3 dated 2020-11-23
scape-2.3-2/scape/data/datalist |only scape-2.3-2/scape/data/x.cod.rda |only scape-2.3-2/scape/data/x.ling.rda |only scape-2.3-2/scape/data/x.oreo.rda |only scape-2.3-2/scape/data/x.saithe.rda |only scape-2.3-2/scape/data/x.sbw.rda |only scape-2.3-2/scape/data/xmcmc.rda |only scape-2.3-2/scape/data/xproj.rda |only scape-2.3.3/scape/DESCRIPTION | 16 ++---- scape-2.3.3/scape/MD5 | 67 +++++++++++++--------------- scape-2.3.3/scape/NAMESPACE | 2 scape-2.3.3/scape/NEWS | 20 -------- scape-2.3.3/scape/R/importMCMC.R | 8 +-- scape-2.3.3/scape/R/importProj.R | 4 - scape-2.3.3/scape/build/vignette.rds |binary scape-2.3.3/scape/data/x.cod.R |only scape-2.3.3/scape/data/x.ling.R |only scape-2.3.3/scape/data/x.oreo.R |only scape-2.3.3/scape/data/x.saithe.R |only scape-2.3.3/scape/data/x.sbw.R |only scape-2.3.3/scape/data/xmcmc.R |only scape-2.3.3/scape/data/xproj.R |only scape-2.3.3/scape/inst/doc/dsc-vignette.pdf |binary scape-2.3.3/scape/inst/doc/gallery.Rnw | 2 scape-2.3.3/scape/inst/doc/gallery.pdf |binary scape-2.3.3/scape/inst/doc/mymodel.Rnw | 8 +-- scape-2.3.3/scape/inst/doc/mymodel.pdf |binary scape-2.3.3/scape/man/estN.Rd | 8 +-- scape-2.3.3/scape/man/importADCAM.Rd | 2 scape-2.3.3/scape/man/importCol.Rd | 2 scape-2.3.3/scape/man/importMCMC.Rd | 2 scape-2.3.3/scape/man/importProj.Rd | 2 scape-2.3.3/scape/man/scape-package.Rd | 6 +- scape-2.3.3/scape/man/x.cod.Rd | 4 - scape-2.3.3/scape/man/x.ling.Rd | 6 +- scape-2.3.3/scape/man/x.oreo.Rd | 8 +-- scape-2.3.3/scape/man/x.saithe.Rd | 2 scape-2.3.3/scape/man/x.sbw.Rd | 10 ++-- scape-2.3.3/scape/man/xmcmc.Rd | 4 - scape-2.3.3/scape/man/xproj.Rd | 4 - scape-2.3.3/scape/vignettes/gallery.Rnw | 2 scape-2.3.3/scape/vignettes/mymodel.Rnw | 8 +-- 42 files changed, 89 insertions(+), 108 deletions(-)
Title: MCMC Diagnostic Plots
Description: Markov chain Monte Carlo diagnostic plots. The purpose of the
package is to combine existing tools from the 'coda' and 'lattice' packages,
and make it easy to adjust graphical details.
Author: Arni Magnusson [aut, cre],
Ian Stewart [aut]
Maintainer: Arni Magnusson <thisisarni@gmail.com>
Diff between plotMCMC versions 2.0-0 dated 2014-03-12 and 2.0.1 dated 2020-11-23
plotMCMC-2.0-0/plotMCMC/data/xbio.rda |only plotMCMC-2.0-0/plotMCMC/data/xpar.rda |only plotMCMC-2.0-0/plotMCMC/data/xpro.rda |only plotMCMC-2.0-0/plotMCMC/data/xrec.rda |only plotMCMC-2.0.1/plotMCMC/DESCRIPTION | 20 +- plotMCMC-2.0.1/plotMCMC/MD5 | 58 ++--- plotMCMC-2.0.1/plotMCMC/NAMESPACE | 4 plotMCMC-2.0.1/plotMCMC/NEWS | 222 ++++++++++------------ plotMCMC-2.0.1/plotMCMC/R/plotAuto.R | 88 ++++----- plotMCMC-2.0.1/plotMCMC/R/plotCumu.R | 97 +++++---- plotMCMC-2.0.1/plotMCMC/R/plotDens.R | 146 +++++++------- plotMCMC-2.0.1/plotMCMC/R/plotQuant.R | 165 +++++++++------- plotMCMC-2.0.1/plotMCMC/R/plotSplom.R | 46 ++-- plotMCMC-2.0.1/plotMCMC/R/plotTrace.R | 127 ++++++------- plotMCMC-2.0.1/plotMCMC/build/vignette.rds |binary plotMCMC-2.0.1/plotMCMC/data/xbio.R |only plotMCMC-2.0.1/plotMCMC/data/xpar.R |only plotMCMC-2.0.1/plotMCMC/data/xpro.R |only plotMCMC-2.0.1/plotMCMC/data/xrec.R |only plotMCMC-2.0.1/plotMCMC/inst/doc/gallery.R | 234 ++++++++++++------------ plotMCMC-2.0.1/plotMCMC/inst/doc/gallery.Rnw | 234 ++++++++++++------------ plotMCMC-2.0.1/plotMCMC/inst/doc/gallery.pdf |binary plotMCMC-2.0.1/plotMCMC/man/plotAuto.Rd | 106 +++++----- plotMCMC-2.0.1/plotMCMC/man/plotCumu.Rd | 114 +++++------ plotMCMC-2.0.1/plotMCMC/man/plotDens.Rd | 178 ++++++++---------- plotMCMC-2.0.1/plotMCMC/man/plotMCMC-package.Rd | 126 ++++++------ plotMCMC-2.0.1/plotMCMC/man/plotQuant.Rd | 204 ++++++++++---------- plotMCMC-2.0.1/plotMCMC/man/plotSplom.Rd | 90 ++++----- plotMCMC-2.0.1/plotMCMC/man/plotTrace.Rd | 162 ++++++++-------- plotMCMC-2.0.1/plotMCMC/man/xbio.Rd | 119 ++++++------ plotMCMC-2.0.1/plotMCMC/man/xpar.Rd | 147 +++++++-------- plotMCMC-2.0.1/plotMCMC/man/xpro.Rd | 115 +++++------ plotMCMC-2.0.1/plotMCMC/man/xrec.Rd | 113 +++++------ plotMCMC-2.0.1/plotMCMC/vignettes/gallery.Rnw | 234 ++++++++++++------------ 34 files changed, 1577 insertions(+), 1572 deletions(-)
Title: The 'Monaco' Editor as a HTML Widget
Description: A HTML widget rendering the 'Monaco' editor. The 'Monaco' editor is the code editor which powers 'VS Code'. It is particularly well developed for 'JavaScript'. In addition to the built-in features of the 'Monaco' editor, the widget allows to prettify multiple languages, to view the 'HTML' rendering of 'Markdown' code, and to view and resize 'SVG' images.
Author: Stéphane Laurent [aut, cre],
Microsoft Corporation [ctb, cph] ('Monaco Editor' library),
James Long and contributors [ctb, cph] ('Prettier' library),
Rich Harris [ctb, cph] ('svg-parser' library),
Lionel Tzatzkin [ctb, cph] ('scale-that-svg' library),
Andrei Kashcha [ctb, cph] ('panzoom' library),
Vitaly Puzrin [ctb, cph] ('markdown-it' library),
Alex Kocharin [ctb, cph] ('markdown-it' library),
John Schlinkert [ctb, cph] ('word-wrap' library),
jQuery contributors [ctb, cph] ('jQuery' library),
Kyle Fox [ctb, cph] ('jQuery Modal' library),
Tristan Edwards [ctb, cph] ('sweetalert2' library),
Limon Monte [ctb, cph] ('sweetalert2' library)
Maintainer: Stéphane Laurent <laurent_step@outlook.fr>
Diff between monaco versions 0.1.0 dated 2020-10-26 and 0.2.0 dated 2020-11-23
DESCRIPTION | 6 +-- MD5 | 22 ++++++------ NEWS.md | 5 ++ inst/htmlwidgets/prettier/parser-babel.js | 2 - inst/htmlwidgets/prettier/parser-html.js | 30 ++++++++--------- inst/htmlwidgets/prettier/parser-markdown.js | 8 ++-- inst/htmlwidgets/prettier/parser-postcss.js | 9 ----- inst/htmlwidgets/prettier/parser-typescript.js | 15 -------- inst/htmlwidgets/prettier/parser-yaml.js | 4 +- inst/htmlwidgets/prettier/standalone.js | 44 +++++++++++++++++++++++-- man/monaco-shiny.Rd | 6 +-- man/monaco.Rd | 5 ++ 12 files changed, 92 insertions(+), 64 deletions(-)
Title: Plot Stacked Areas and Confidence Bands as Filled Polygons
Description: Plot stacked areas and confidence bands as filled polygons, or add
polygons to existing plots. A variety of input formats are supported,
including vectors, matrices, data frames, formulas, etc.
Author: Arni Magnusson [aut, cre]
Maintainer: Arni Magnusson <thisisarni@gmail.com>
Diff between areaplot versions 1.2-1 dated 2019-02-16 and 1.2.2 dated 2020-11-23
DESCRIPTION | 16 ++++++++-------- MD5 | 4 ++-- NEWS | 8 ++++++++ 3 files changed, 18 insertions(+), 10 deletions(-)
Title: The Swiss Municipal Data Merger Tool Maps Municipalities Over
Time
Description: In Switzerland, the landscape of municipalities is changing rapidly
mainly due to mergers. The Swiss Municipal Data Merger Tool
automatically detects these mutations and maps municipalities over time, i.e. municipalities of an old state
to municipalities of a new state. This functionality is helpful when working
with datasets that are based on different spatial references. The spatial
reference in this context signifies a set of municipalities at a given point in time.
Author: Valentin Knechtl [aut, cre] (<https://orcid.org/0000-0002-8545-8883>)
Maintainer: Valentin Knechtl <valentin.knechtl@unibas.ch>
Diff between SMMT versions 1.0.2 dated 2020-07-16 and 1.0.5 dated 2020-11-23
SMMT-1.0.2/SMMT/inst/doc/overview.R |only SMMT-1.0.2/SMMT/inst/doc/overview.Rmd |only SMMT-1.0.2/SMMT/inst/doc/overview.html |only SMMT-1.0.2/SMMT/vignettes/overview.Rmd |only SMMT-1.0.5/SMMT/DESCRIPTION | 15 +++++----- SMMT-1.0.5/SMMT/MD5 | 24 +++++++++-------- SMMT-1.0.5/SMMT/NAMESPACE | 3 ++ SMMT-1.0.5/SMMT/R/download_municipality_inventory.R |only SMMT-1.0.5/SMMT/R/map_old_to_new_state.R | 9 ++++-- SMMT-1.0.5/SMMT/R/smmt-package.R | 10 ++++--- SMMT-1.0.5/SMMT/build/vignette.rds |binary SMMT-1.0.5/SMMT/inst/doc/manual.R |only SMMT-1.0.5/SMMT/inst/doc/manual.Rmd |only SMMT-1.0.5/SMMT/inst/doc/manual.html |only SMMT-1.0.5/SMMT/man/download_municipality_inventory.Rd |only SMMT-1.0.5/SMMT/man/smmt.Rd | 4 +- SMMT-1.0.5/SMMT/vignettes/gemeinden_2000_sw_cut.png |only SMMT-1.0.5/SMMT/vignettes/gemeinden_2020_sw_cut.png |only SMMT-1.0.5/SMMT/vignettes/manual.Rmd |only 19 files changed, 40 insertions(+), 25 deletions(-)
Title: 'RStudio' Addin for Quick Setup of ShinyDashboard Apps
Description: This 'RStudio' addin enables faster creation of the project structure and design of 'ShinyDashboard' apps. The graphical interface allows you to add certain code templates interactively. In addition to generating the basic project structure, the navigation in the app itself can also be defined or the app can be structured with modules.
Author: Leon Binder [cre, aut],
Bernhard Bauer [ctb],
Michael Scholz [ctb],
Bernhard Daffner [ctb],
Jörg Bauer [ctb]
Maintainer: Leon Binder <leon.binder@th-deg.de>
Diff between ShinyQuickStarter versions 1.0.0 dated 2020-11-16 and 1.0.1 dated 2020-11-23
DESCRIPTION | 30 +-- MD5 | 18 +- NAMESPACE | 1 NEWS.md | 4 R/ShinyQuickStarter-package.R | 3 R/function_visNetwork.R | 1 R/shinyQuickStarter.R | 26 ++- inst/extdata/templates/code_templates.csv | 260 +++++++++++++++--------------- man/ShinyQuickStarter-package.Rd | 56 +++--- man/shinyQuickStarter.Rd | 50 ++--- 10 files changed, 232 insertions(+), 217 deletions(-)
More information about ShinyQuickStarter at CRAN
Permanent link
Title: Tools to Read and Manipulate Fisheries Data
Description: Set of tools to read and manipulate various data formats for fisheries. Mainly
catered towards scientific trawl survey sampling ('biotic') data, acoustic
trawl data, and commercial fishing catch ('landings') data. Among the
supported data formats are the data products from the Norwegian Institute
Marine Research ('IMR') and the International Council for the Exploration of
the Sea (ICES).
Author: Ibrahim Umar [cre, aut],
Sindre Vatnehol [aut],
Arne Johannes Holmin [aut],
Edvin Fuglebakk [aut],
Espen Johnsen [aut],
Norwegian Institute of Marine Research [cph, fnd]
Maintainer: Ibrahim Umar <ibrahim.umar@hi.no>
Diff between RstoxData versions 1.0.16 dated 2020-11-18 and 1.0.17 dated 2020-11-23
RstoxData-1.0.16/RstoxData/man/StoxAcousticStartMiddleStopDateTime.Rd |only RstoxData-1.0.16/RstoxData/man/writeICESAcoustic.Rd |only RstoxData-1.0.16/RstoxData/man/writeICESBiotic.Rd |only RstoxData-1.0.16/RstoxData/man/writeICESDatras.Rd |only RstoxData-1.0.17/RstoxData/DESCRIPTION | 8 RstoxData-1.0.17/RstoxData/MD5 | 65 RstoxData-1.0.17/RstoxData/NAMESPACE | 7 RstoxData-1.0.17/RstoxData/NEWS.md | 12 RstoxData-1.0.17/RstoxData/R/DefineAndUpdateVariables.R | 2 RstoxData-1.0.17/RstoxData/R/Read.R | 50 RstoxData-1.0.17/RstoxData/R/RstoxData-package.R | 54 RstoxData-1.0.17/RstoxData/R/StoxAcoustic.R | 77 RstoxData-1.0.17/RstoxData/R/StoxBiotic.R | 80 RstoxData-1.0.17/RstoxData/R/StoxExport.R | 2050 +++++----- RstoxData-1.0.17/RstoxData/R/Utilities.R | 14 RstoxData-1.0.17/RstoxData/R/data.R | 8 RstoxData-1.0.17/RstoxData/R/readXmlFile.R | 2 RstoxData-1.0.17/RstoxData/R/stoxFunctionAttributes.R | 17 RstoxData-1.0.17/RstoxData/R/xsdUtils.R | 10 RstoxData-1.0.17/RstoxData/README.md | 12 RstoxData-1.0.17/RstoxData/inst/extdata/functionArguments.rds |binary RstoxData-1.0.17/RstoxData/man/AddToStoxBiotic.Rd | 8 RstoxData-1.0.17/RstoxData/man/ModelData.Rd | 9 RstoxData-1.0.17/RstoxData/man/ReadAcoustic.Rd | 4 RstoxData-1.0.17/RstoxData/man/ReadBiotic.Rd | 4 RstoxData-1.0.17/RstoxData/man/RstoxData.Rd | 2 RstoxData-1.0.17/RstoxData/man/StoxAcoustic.Rd | 6 RstoxData-1.0.17/RstoxData/man/StoxBiotic.Rd | 6 RstoxData-1.0.17/RstoxData/man/WriteICESAcoustic.Rd |only RstoxData-1.0.17/RstoxData/man/WriteICESBiotic.Rd |only RstoxData-1.0.17/RstoxData/man/WriteICESDatras.Rd |only RstoxData-1.0.17/RstoxData/man/general_arguments.Rd | 4 RstoxData-1.0.17/RstoxData/man/lapplyOnCores.Rd | 4 RstoxData-1.0.17/RstoxData/man/mapplyOnCores.Rd | 2 RstoxData-1.0.17/RstoxData/man/stoxFunctionAttributes.Rd | 2 RstoxData-1.0.17/RstoxData/tests/testthat/test-StoxExport.R | 24 RstoxData-1.0.17/RstoxData/tests/testthat/test-readXmlFile.R | 3 37 files changed, 1258 insertions(+), 1288 deletions(-)
Title: 3D Visualization Using OpenGL
Description: Provides medium to high level functions for 3D interactive graphics, including
functions modelled on base graphics (plot3d(), etc.) as well as functions for
constructing representations of geometric objects (cube3d(), etc.). Output
may be on screen using OpenGL, or to various standard 3D file formats including
WebGL, PLY, OBJ, STL as well as 2D image formats, including PNG, Postscript, SVG, PGF.
Author: Daniel Adler <dadler@uni-goettingen.de>, Duncan Murdoch <murdoch.duncan@gmail.com>, and others (see README)
Maintainer: Duncan Murdoch <murdoch.duncan@gmail.com>
Diff between rgl versions 0.100.54 dated 2020-04-14 and 0.103.5 dated 2020-11-23
rgl-0.100.54/rgl/R/withPrivateSeed.R |only rgl-0.100.54/rgl/inst/doc/legacyWebGL.R |only rgl-0.100.54/rgl/inst/doc/legacyWebGL.Rmd |only rgl-0.100.54/rgl/inst/doc/legacyWebGL.html |only rgl-0.100.54/rgl/inst/htmlwidgets/rglPlayer.yaml |only rgl-0.100.54/rgl/inst/htmlwidgets/rglWebGL.yaml |only rgl-0.100.54/rgl/man/hook_rgl.Rd |only rgl-0.100.54/rgl/vignettes/legacyWebGL.Rmd |only rgl-0.103.5/rgl/DESCRIPTION | 19 rgl-0.103.5/rgl/MD5 | 314 rgl-0.103.5/rgl/NAMESPACE | 37 rgl-0.103.5/rgl/R/Sweave_knitr.R | 493 rgl-0.103.5/rgl/R/animate.R | 16 rgl-0.103.5/rgl/R/as.mesh3d.default.R | 56 rgl-0.103.5/rgl/R/as.triangles3d.R | 2 rgl-0.103.5/rgl/R/asy.R | 28 rgl-0.103.5/rgl/R/bgplot3d.R | 2 rgl-0.103.5/rgl/R/callbacks.R | 8 rgl-0.103.5/rgl/R/clipMesh3d.R | 462 rgl-0.103.5/rgl/R/contourLines3d.R |only rgl-0.103.5/rgl/R/convertScene.R | 110 rgl-0.103.5/rgl/R/device.R | 12 rgl-0.103.5/rgl/R/enum.R | 2 rgl-0.103.5/rgl/R/filledContour3d.R |only rgl-0.103.5/rgl/R/getscene.R | 19 rgl-0.103.5/rgl/R/hooks.R | 5 rgl-0.103.5/rgl/R/identify3d.R | 18 rgl-0.103.5/rgl/R/merge.mesh3d.R |only rgl-0.103.5/rgl/R/mesh3d.R | 237 rgl-0.103.5/rgl/R/obj.R | 8 rgl-0.103.5/rgl/R/par3d.R | 2 rgl-0.103.5/rgl/R/playwidget.R | 1 rgl-0.103.5/rgl/R/plot3d.R | 28 rgl-0.103.5/rgl/R/ply.R | 8 rgl-0.103.5/rgl/R/r3d.rgl.R | 67 rgl-0.103.5/rgl/R/rglMouse.R | 4 rgl-0.103.5/rgl/R/rglcontroller.R | 1 rgl-0.103.5/rgl/R/rglwidget.R | 85 rgl-0.103.5/rgl/R/saveURI.R |only rgl-0.103.5/rgl/R/scene.R | 50 rgl-0.103.5/rgl/R/selectpoints3d.R | 2 rgl-0.103.5/rgl/R/shapelist3d.R | 112 rgl-0.103.5/rgl/R/stl.R | 8 rgl-0.103.5/rgl/R/subscenes.R | 16 rgl-0.103.5/rgl/R/tkpar3dsave.R | 2 rgl-0.103.5/rgl/R/tkspin3d.R | 28 rgl-0.103.5/rgl/R/webGLcontrols.R | 10 rgl-0.103.5/rgl/R/zzz.R | 51 rgl-0.103.5/rgl/README | 29 rgl-0.103.5/rgl/build/rgl.pdf |only rgl-0.103.5/rgl/build/vignette.rds |binary rgl-0.103.5/rgl/cleanup | 2 rgl-0.103.5/rgl/configure.win | 91 rgl-0.103.5/rgl/demo/flag.R | 2 rgl-0.103.5/rgl/demo/mouseCallbacks.R | 100 rgl-0.103.5/rgl/demo/rglExamples.R | 69 rgl-0.103.5/rgl/demo/shapes3d.R | 4 rgl-0.103.5/rgl/demo/shinyToggle.R | 2 rgl-0.103.5/rgl/demo/simpleShinyRgl.R | 2 rgl-0.103.5/rgl/demo/stereo.R | 22 rgl-0.103.5/rgl/inst/NEWS | 80 rgl-0.103.5/rgl/inst/doc/WebGL.R | 1 rgl-0.103.5/rgl/inst/doc/WebGL.Rmd | 14 rgl-0.103.5/rgl/inst/doc/WebGL.html | 3934 ++-- rgl-0.103.5/rgl/inst/doc/rgl.R | 37 rgl-0.103.5/rgl/inst/doc/rgl.Rmd | 259 rgl-0.103.5/rgl/inst/doc/rgl.html | 8766 ++-------- rgl-0.103.5/rgl/inst/htmlwidgets/lib/rglClass/controls.src.js |only rgl-0.103.5/rgl/inst/htmlwidgets/lib/rglClass/draw.src.js |only rgl-0.103.5/rgl/inst/htmlwidgets/lib/rglClass/init.src.js |only rgl-0.103.5/rgl/inst/htmlwidgets/lib/rglClass/mouse.src.js |only rgl-0.103.5/rgl/inst/htmlwidgets/lib/rglClass/pieces.src.js |only rgl-0.103.5/rgl/inst/htmlwidgets/lib/rglClass/projection.src.js |only rgl-0.103.5/rgl/inst/htmlwidgets/lib/rglClass/rglClass.src.js | 4037 ---- rgl-0.103.5/rgl/inst/htmlwidgets/lib/rglClass/rglTimer.src.js |only rgl-0.103.5/rgl/inst/htmlwidgets/lib/rglClass/selection.src.js |only rgl-0.103.5/rgl/inst/htmlwidgets/lib/rglClass/shaders.src.js |only rgl-0.103.5/rgl/inst/htmlwidgets/lib/rglClass/subscenes.src.js |only rgl-0.103.5/rgl/inst/htmlwidgets/lib/rglClass/textures.src.js |only rgl-0.103.5/rgl/inst/htmlwidgets/lib/rglClass/utils.src.js |only rgl-0.103.5/rgl/inst/shinyDemo/server.R | 10 rgl-0.103.5/rgl/inst/shinySimple/server.R | 2 rgl-0.103.5/rgl/man/3dobjects.Rd | 2 rgl-0.103.5/rgl/man/ageSetter.Rd | 4 rgl-0.103.5/rgl/man/arrow3d.Rd | 4 rgl-0.103.5/rgl/man/as.mesh3d.default.Rd | 2 rgl-0.103.5/rgl/man/as.mesh3d.rglId.Rd | 4 rgl-0.103.5/rgl/man/attributes.Rd | 4 rgl-0.103.5/rgl/man/bbox.Rd | 2 rgl-0.103.5/rgl/man/bg.Rd | 43 rgl-0.103.5/rgl/man/bgplot3d.Rd | 2 rgl-0.103.5/rgl/man/callbacks.Rd | 11 rgl-0.103.5/rgl/man/clipMesh3d.Rd | 139 rgl-0.103.5/rgl/man/contourLines3d.Rd |only rgl-0.103.5/rgl/man/elementId2Prefix.Rd | 16 rgl-0.103.5/rgl/man/light.Rd | 6 rgl-0.103.5/rgl/man/makeDependency.Rd |only rgl-0.103.5/rgl/man/material.Rd | 2 rgl-0.103.5/rgl/man/merge.mesh3d.Rd |only rgl-0.103.5/rgl/man/mesh3d.Rd | 46 rgl-0.103.5/rgl/man/mfrow3d.Rd | 4 rgl-0.103.5/rgl/man/open3d.Rd |only rgl-0.103.5/rgl/man/par3d.Rd | 50 rgl-0.103.5/rgl/man/par3dinterp.Rd | 2 rgl-0.103.5/rgl/man/persp3d.Rd | 7 rgl-0.103.5/rgl/man/persp3d.deldir.Rd | 16 rgl-0.103.5/rgl/man/persp3d.function.Rd | 2 rgl-0.103.5/rgl/man/persp3d.tri.Rd | 4 rgl-0.103.5/rgl/man/play3d.Rd | 4 rgl-0.103.5/rgl/man/plot3d.lm.Rd | 32 rgl-0.103.5/rgl/man/postscript.Rd | 4 rgl-0.103.5/rgl/man/primitive.Rd | 2 rgl-0.103.5/rgl/man/propertySetter.Rd | 143 rgl-0.103.5/rgl/man/readSTL.Rd | 4 rgl-0.103.5/rgl/man/rgl-package.Rd | 2 rgl-0.103.5/rgl/man/rgl.attrib.info.Rd | 4 rgl-0.103.5/rgl/man/rgl.select.Rd | 2 rgl-0.103.5/rgl/man/rgl.user2window.Rd | 2 rgl-0.103.5/rgl/man/rglIds.Rd | 7 rgl-0.103.5/rgl/man/rglMouse.Rd | 2 rgl-0.103.5/rgl/man/rglToLattice.Rd | 9 rgl-0.103.5/rgl/man/rglwidget.Rd | 38 rgl-0.103.5/rgl/man/scene.Rd | 31 rgl-0.103.5/rgl/man/scene3d.Rd | 4 rgl-0.103.5/rgl/man/select3d.Rd | 4 rgl-0.103.5/rgl/man/selectpoints3d.Rd | 2 rgl-0.103.5/rgl/man/setGraphicsDelay.Rd |only rgl-0.103.5/rgl/man/setupKnitr.Rd |only rgl-0.103.5/rgl/man/shiny.Rd | 2 rgl-0.103.5/rgl/man/shinyGetPar3d.Rd | 8 rgl-0.103.5/rgl/man/show2d.Rd | 2 rgl-0.103.5/rgl/man/snapshot.Rd | 18 rgl-0.103.5/rgl/man/spheres.Rd | 16 rgl-0.103.5/rgl/man/spin3d.Rd | 4 rgl-0.103.5/rgl/man/sprites.Rd | 2 rgl-0.103.5/rgl/man/subscene3d.Rd | 2 rgl-0.103.5/rgl/man/surface.Rd | 5 rgl-0.103.5/rgl/man/texts.Rd | 2 rgl-0.103.5/rgl/man/thigmophobe3d.Rd | 5 rgl-0.103.5/rgl/man/tkpar3dsave.Rd | 2 rgl-0.103.5/rgl/man/tkspin3d.Rd | 2 rgl-0.103.5/rgl/man/tkspinControl.Rd | 10 rgl-0.103.5/rgl/man/vertexControl.Rd | 2 rgl-0.103.5/rgl/man/webGLcontrols.Rd | 35 rgl-0.103.5/rgl/man/writeASY.Rd | 22 rgl-0.103.5/rgl/man/writeOBJ.Rd | 6 rgl-0.103.5/rgl/man/writePLY.Rd | 8 rgl-0.103.5/rgl/man/writeWebGL.Rd | 71 rgl-0.103.5/rgl/po/R-rgl.pot | 2 rgl-0.103.5/rgl/src/Background.cpp | 23 rgl-0.103.5/rgl/src/Background.h | 4 rgl-0.103.5/rgl/src/Makevars.in | 3 rgl-0.103.5/rgl/src/Makevars.win |only rgl-0.103.5/rgl/src/SceneNode.h | 1 rgl-0.103.5/rgl/src/SphereSet.cpp | 46 rgl-0.103.5/rgl/src/SphereSet.h | 3 rgl-0.103.5/rgl/src/SpriteSet.cpp | 2 rgl-0.103.5/rgl/src/String.cpp | 1 rgl-0.103.5/rgl/src/Surface.cpp | 2 rgl-0.103.5/rgl/src/Texture.cpp | 2 rgl-0.103.5/rgl/src/api.cpp | 9 rgl-0.103.5/rgl/src/api.h | 4 rgl-0.103.5/rgl/src/config.h | 1 rgl-0.103.5/rgl/src/devicemanager.cpp | 2 rgl-0.103.5/rgl/src/ext/ftgl/FTGlyph/FTBufferGlyph.cpp | 4 rgl-0.103.5/rgl/src/ext/ftgl/FTInternals.h | 1 rgl-0.103.5/rgl/src/gl2ps.h | 1 rgl-0.103.5/rgl/src/glgui.cpp | 4 rgl-0.103.5/rgl/src/init.cpp | 10 rgl-0.103.5/rgl/src/scene.cpp | 4 rgl-0.103.5/rgl/src/x11gui.cpp | 23 rgl-0.103.5/rgl/vignettes/WebGL.Rmd | 14 rgl-0.103.5/rgl/vignettes/rgl.Rmd | 259 rgl-0.103.5/rgl/vignettes/setup.R | 20 174 files changed, 7746 insertions(+), 13377 deletions(-)
Title: Rare Variant Analysis and Genetic Simulations
Description: Rare variant association tests: burden tests (Bocher et al. 2019 <doi:10.1002/gepi.22210>) and the Sequence Kernel Association Test; and genetic simulations.
Author: Ozvan Bocher and Hervé Perdry
Maintainer: Ozvan Bocher <bocherozvan@gmail.com>
Diff between Ravages versions 0.1 dated 2020-11-11 and 0.1.1 dated 2020-11-23
DESCRIPTION | 6 +++--- MD5 | 9 +++++---- R/zzz.r |only inst/doc/Ravages_Simulations_vignette.html | 2 +- inst/doc/Ravages_vignette.html | 10 +++++----- src/moments.cpp | 4 ++-- 6 files changed, 16 insertions(+), 15 deletions(-)
Title: Access Elevation Data from Various APIs
Description: Several web services are available that provide access to elevation
data. This package provides access to several of those services and
returns elevation data either as a SpatialPointsDataFrame from
point elevation services or as a raster object from raster
elevation services. Currently, the package supports access to the
Amazon Web Services Terrain Tiles <https://registry.opendata.aws/terrain-tiles/>,
the Open Topography Global Datasets API <https://opentopography.org/developers/>,
and the USGS Elevation Point Query Service <https://nationalmap.gov/epqs/>.
Author: Jeffrey Hollister [aut, cre] (<https://orcid.org/0000-0002-9254-9740>),
Tarak Shah [ctb],
Alec L. Robitaille [ctb] (<https://orcid.org/0000-0002-4706-1762>),
Marcus W. Beck [rev] (<https://orcid.org/0000-0002-4996-0059>),
Mike Johnson [ctb] (<https://orcid.org/0000-0002-5288-8350>)
Maintainer: Jeffrey Hollister <hollister.jeff@epa.gov>
Diff between elevatr versions 0.2.0 dated 2018-11-28 and 0.3.1 dated 2020-11-23
DESCRIPTION | 33 +- MD5 | 55 ++-- NAMESPACE | 2 R/get_elev_point.R | 31 ++ R/get_elev_raster.R | 241 ++++++++++++++++----- R/internal.R | 86 ++++++- README.md | 105 ++++++--- build/vignette.rds |binary data/lake.rda |binary data/sp_big.rda |binary inst/CITATION | 15 - inst/doc/introduction_to_elevatr.R | 67 ------ inst/doc/introduction_to_elevatr.Rmd | 12 - inst/doc/introduction_to_elevatr.html | 375 ++++++++++++++++++---------------- man/bbox_to_sp.Rd | 8 man/estimate_raster_size.Rd |only man/get_aws_points.Rd | 2 man/get_aws_terrain.Rd | 4 man/get_elev_point.Rd | 23 +- man/get_elev_raster.Rd | 57 +++-- man/get_opentopo.Rd |only man/lake.Rd | 4 man/merge_rasters.Rd |only man/proj_expand.Rd | 2 man/pt_df.Rd | 4 man/sp_big.Rd | 4 tests/testthat/test-get_elev_point.R | 16 - tests/testthat/test-get_elev_raster.R | 36 ++- tests/testthat/test-internal.R | 34 ++- vignettes/introduction_to_elevatr.Rmd | 12 - 30 files changed, 774 insertions(+), 454 deletions(-)
Title: Latent and Stochastic Block Model Estimation by a 'V-EM'
Algorithm
Description: Latent and Stochastic Block Model estimation by a Variational EM algorithm.
Various probability distribution are provided (Bernoulli,
Poisson...), with or without covariates.
Author: Jean-Benoist Leger <jbleger@hds.utc.fr>, Pierre Barbillon <pierre.barbillon@agroparistech.fr>, Julien Chiquet <julien.chiquet@inrae.fr>
Maintainer: Jean-Benoist Leger <jbleger@hds.utc.fr>
Diff between blockmodels versions 1.1.1 dated 2015-04-21 and 1.1.4 dated 2020-11-23
DESCRIPTION | 16 + MD5 | 57 +++--- NAMESPACE | 6 R/membership_LBM.R | 9 - R/model.R | 49 +++++ R/multivariate_model.R | 85 ++++++---- R/scalar_model.R | 109 +++++++++---- man/BM_bernoulli.Rd | 2 man/BM_bernoulli_covariates.Rd | 2 man/BM_bernoulli_covariates_fast.Rd | 2 man/BM_bernoulli_multiplex.Rd | 8 man/BM_gaussian.Rd | 2 man/BM_gaussian_covariates.Rd | 2 man/BM_gaussian_multivariate.Rd | 2 man/BM_gaussian_multivariate_independent.Rd | 2 man/BM_gaussian_multivariate_independent_homoscedastic.Rd | 2 man/BM_poisson.Rd | 2 man/BM_poisson_covariates.Rd | 2 src/blockmodels_init.c |only tests/BM_bernoulli.R | 1 tests/BM_bernoulli_covariates.R | 1 tests/BM_bernoulli_covariates_fast.R | 1 tests/BM_bernoulli_multiplex.R | 7 tests/BM_gaussian.R | 1 tests/BM_gaussian_covariates.R | 1 tests/BM_gaussian_multivariate.R | 1 tests/BM_gaussian_multivariate_independent.R | 1 tests/BM_gaussian_multivariate_independent_homoscedastic.R | 1 tests/BM_poisson.R | 1 tests/BM_poisson_covariates.R | 1 30 files changed, 263 insertions(+), 113 deletions(-)
Title: Material Management
Description: A set of functions, classes and methods for performing ABC and ABC/XYZ analyses, identifying overperforming, underperforming and constantly performing items, and plotting, analyzing as well as predicting the temporal development of items.
Author: Leon Binder [cre, aut],
Bernhard Bauer [aut],
Michael Scholz [aut]
Maintainer: Leon Binder <leon.binder@th-deg.de>
Diff between matman versions 1.1.0 dated 2020-05-14 and 1.1.1 dated 2020-11-23
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NEWS.md | 5 +++++ R/launchApp.R | 13 ++++++++++++- R/matman-package.R | 2 +- man/matman-package.Rd | 2 +- 6 files changed, 29 insertions(+), 13 deletions(-)
Title: Fuzzy Statistical Tools
Description: The main goal of this package is to present various fuzzy statistical tools. It intends to provide an implementation of the theoretical and empirical approaches presented in the thesis entitled "The signed distance measure in fuzzy statistical analysis. Some theoretical, empirical and programming advances" (Thesis to be published soon. For the theoretical approaches, see Berkachy R. and Donze L. (2019) <doi:10.1007/978-3-030-03368-2_1>. For the empirical approaches, see Berkachy R. and Donze L. (2016) <ISBN: 978-989-758-201-1>). Important (non-exhaustive) implementation highlights of this package are as follows: (1) a numerical procedure to estimate the fuzzy difference and the fuzzy square. (2) two numerical methods of fuzzification. (3) a function performing different possibilities of distances, including the signed distance and the generalized signed distance for instance. (4) numerical estimations of fuzzy statistical measures such as the variance, the moment, etc. (5) two methods of estimation of the bootstrap distribution of the likelihood ratio in the fuzzy context. (6) an estimation of a fuzzy confidence interval by the likelihood ratio method. (7) testing fuzzy hypotheses and/or fuzzy data by fuzzy confidence intervals in the Kwakernaak - Kruse and Meyer sense. (8) a general method to estimate the fuzzy p-value with fuzzy hypotheses and/or fuzzy data. (9) a method of estimation of global and individual evaluations of linguistic questionnaires. (10) numerical estimations of multi-ways analysis of variance models in the fuzzy context. The unbalance in the considered designs are also foreseen.
Author: Redina Berkachy <redina.berkachy@unifr.ch>, Laurent Donze <laurent.donze@unifr.ch>
Maintainer: Redina Berkachy <redina.berkachy@unifr.ch>
Diff between FuzzySTs versions 0.1 dated 2020-07-03 and 0.2 dated 2020-11-23
DESCRIPTION | 8 MD5 | 38 +++- R/Fuzzy_decisions_25102018.R | 4 R/Fuzzy_decisions_ML_28112018.R | 17 +- R/Fuzzy_test_CI_25102018.R | 10 - build/vignette.rds |binary inst/doc/Vignette_A.R | 48 ++++- inst/doc/Vignette_A.Rmd | 76 +++++++-- inst/doc/Vignette_A.html | 321 ++++++++++++++++++++-------------------- inst/doc/Vignette_B.R |only inst/doc/Vignette_B.Rmd |only inst/doc/Vignette_B.html |only inst/doc/Vignette_C.R |only inst/doc/Vignette_C.Rmd |only inst/doc/Vignette_C.html |only inst/doc/Vignette_D.R |only inst/doc/Vignette_D.Rmd |only inst/doc/Vignette_D.html |only inst/doc/Vignette_E.R |only inst/doc/Vignette_E.Rmd |only inst/doc/Vignette_E.html |only man/Fuzzy.CI.ML.test.Rd | 6 man/Fuzzy.decisions.ML.Rd | 12 - vignettes/Vignette_A.Rmd | 76 +++++++-- vignettes/Vignette_B.Rmd |only vignettes/Vignette_C.Rmd |only vignettes/Vignette_D.Rmd |only vignettes/Vignette_E.Rmd |only 28 files changed, 384 insertions(+), 232 deletions(-)
Title: HTML Output Formats and Templates for 'rmarkdown' Documents
Description: HTML formats and templates for 'rmarkdown' documents, with some extra
features such as automatic table of contents, lightboxed figures, dynamic
crosstab helper.
Author: Julien Barnier [aut, cre]
Maintainer: Julien Barnier <julien.barnier@cnrs.fr>
Diff between rmdformats versions 0.3.7 dated 2020-03-11 and 1.0.0 dated 2020-11-23
rmdformats-0.3.7/rmdformats/R/create.doc.R |only rmdformats-0.3.7/rmdformats/build |only rmdformats-0.3.7/rmdformats/inst/doc |only rmdformats-0.3.7/rmdformats/inst/templates/html_clean/Makefile |only rmdformats-0.3.7/rmdformats/inst/templates/html_clean/html_clean.html |only rmdformats-0.3.7/rmdformats/inst/templates/html_docco/Makefile |only rmdformats-0.3.7/rmdformats/inst/templates/html_docco/html_docco.html |only rmdformats-0.3.7/rmdformats/inst/templates/material/Makefile |only rmdformats-0.3.7/rmdformats/inst/templates/readthedown/Makefile |only rmdformats-0.3.7/rmdformats/inst/templates/readthedown/fonts/RobotoSlab-Light.ttf |only rmdformats-0.3.7/rmdformats/inst/templates/readthedown/fonts/RobotoSlab-Thin.ttf |only rmdformats-0.3.7/rmdformats/inst/templates/readthedown/readthedown.html |only rmdformats-0.3.7/rmdformats/man/create.doc.Rd |only rmdformats-0.3.7/rmdformats/vignettes |only rmdformats-1.0.0/rmdformats/DESCRIPTION | 12 rmdformats-1.0.0/rmdformats/MD5 | 105 + rmdformats-1.0.0/rmdformats/NAMESPACE | 5 rmdformats-1.0.0/rmdformats/NEWS | 13 rmdformats-1.0.0/rmdformats/R/downcute.R |only rmdformats-1.0.0/rmdformats/R/html_clean.R | 80 - rmdformats-1.0.0/rmdformats/R/html_dependencies.R | 10 rmdformats-1.0.0/rmdformats/R/html_docco.R | 75 - rmdformats-1.0.0/rmdformats/R/html_template.R |only rmdformats-1.0.0/rmdformats/R/lockdown.R |only rmdformats-1.0.0/rmdformats/R/material.R | 81 - rmdformats-1.0.0/rmdformats/R/pilltabs.R | 1 rmdformats-1.0.0/rmdformats/R/readthedown.R | 91 - rmdformats-1.0.0/rmdformats/R/robobook.R |only rmdformats-1.0.0/rmdformats/README.md | 217 ++- rmdformats-1.0.0/rmdformats/inst/rmarkdown/templates/downcute |only rmdformats-1.0.0/rmdformats/inst/rmarkdown/templates/html_clean/skeleton/skeleton.Rmd | 2 rmdformats-1.0.0/rmdformats/inst/rmarkdown/templates/html_docco/skeleton/skeleton.Rmd | 2 rmdformats-1.0.0/rmdformats/inst/rmarkdown/templates/material/skeleton/skeleton.Rmd | 2 rmdformats-1.0.0/rmdformats/inst/rmarkdown/templates/readthedown/skeleton/skeleton.Rmd | 2 rmdformats-1.0.0/rmdformats/inst/rmarkdown/templates/robobook |only rmdformats-1.0.0/rmdformats/inst/templates/downcute |only rmdformats-1.0.0/rmdformats/inst/templates/html_clean/clean.css | 21 rmdformats-1.0.0/rmdformats/inst/templates/html_docco/docco.css | 15 rmdformats-1.0.0/rmdformats/inst/templates/lockdown |only rmdformats-1.0.0/rmdformats/inst/templates/material/material.css | 5 rmdformats-1.0.0/rmdformats/inst/templates/material/material.html | 603 +++++----- rmdformats-1.0.0/rmdformats/inst/templates/prism |only rmdformats-1.0.0/rmdformats/inst/templates/readthedown/readthedown.css | 110 - rmdformats-1.0.0/rmdformats/inst/templates/readthedown/readthedown.js | 8 rmdformats-1.0.0/rmdformats/inst/templates/readthedown/readthedown_fonts.css |only rmdformats-1.0.0/rmdformats/inst/templates/robobook |only rmdformats-1.0.0/rmdformats/inst/templates/template.html |only rmdformats-1.0.0/rmdformats/man/downcute.Rd |only rmdformats-1.0.0/rmdformats/man/html_clean.Rd | 18 rmdformats-1.0.0/rmdformats/man/html_docco.Rd | 8 rmdformats-1.0.0/rmdformats/man/lockdown.Rd |only rmdformats-1.0.0/rmdformats/man/material.Rd | 8 rmdformats-1.0.0/rmdformats/man/pilltabs.Rd | 3 rmdformats-1.0.0/rmdformats/man/readthedown.Rd | 15 rmdformats-1.0.0/rmdformats/man/robobook.Rd |only rmdformats-1.0.0/rmdformats/tools/screenshots/downcute.png |only rmdformats-1.0.0/rmdformats/tools/screenshots/lockdown.png |only rmdformats-1.0.0/rmdformats/tools/screenshots/robobook.png |only 58 files changed, 825 insertions(+), 687 deletions(-)
Title: Data-Driven Identification of SVAR Models
Description: Implements data-driven identification methods for structural vector autoregressive (SVAR) models.
Based on an existing VAR model object (provided by e.g. VAR() from the 'vars' package), the structural
impact matrix is obtained via data-driven identification techniques (i.e. changes in volatility (Rigobon, R. (2003) <doi:10.1162/003465303772815727>), patterns of GARCH (Normadin, M., Phaneuf, L. (2004) <doi:10.1016/j.jmoneco.2003.11.002>),
independent component analysis (Matteson, D. S, Tsay, R. S., (2013) <doi:10.1080/01621459.2016.1150851>), least dependent innovations (Herwartz, H., Ploedt, M., (2016) <doi:10.1016/j.jimonfin.2015.11.001>),
smooth transition in variances (Luetkepohl, H., Netsunajev, A. (2017) <doi:10.1016/j.jedc.2017.09.001>) or non-Gaussian maximum likelihood (Lanne, M., Meitz, M., Saikkonen, P. (2017) <doi:10.1016/j.jeconom.2016.06.002>)).
Author: Alexander Lange [aut, cre],
Bernhard Dalheimer [aut],
Helmut Herwartz [aut],
Simone Maxand [aut],
Hannes Riebl [ctb]
Maintainer: Alexander Lange <alexander.lange@uni-goettingen.de>
Diff between svars versions 1.3.4 dated 2020-11-12 and 1.3.5 dated 2020-11-23
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- inst/doc/svars.pdf |binary tests/testthat/test-irf.R | 6 +++--- 4 files changed, 10 insertions(+), 10 deletions(-)
Title: Testing Neighbor Effects in Marker-Based Regressions
Description: To incorporate neighbor genotypic identity into genome-wide association studies, the package provides a set of functions for variation partitioning and association mapping. The theoretical background of the method is described in Sato et al. (2019) <doi:10.1101/845735>.
Author: Yasuhiro Sato [aut, cre] (<https://orcid.org/0000-0002-6466-723X>),
Eiji Yamamoto [aut],
Kentaro K. Shimizu [aut] (<https://orcid.org/0000-0002-6483-1781>),
Atsushi J. Nagano [aut] (<https://orcid.org/0000-0001-7891-5049>)
Maintainer: Yasuhiro Sato <sato.yasuhiro.36c@kyoto-u.jp>
Diff between rNeighborGWAS versions 1.2.1 dated 2020-07-22 and 1.2.2 dated 2020-11-23
rNeighborGWAS-1.2.1/rNeighborGWAS/tests/testthat/test-neiGWAS.R |only rNeighborGWAS-1.2.2/rNeighborGWAS/DESCRIPTION | 6 rNeighborGWAS-1.2.2/rNeighborGWAS/MD5 | 40 ++-- rNeighborGWAS-1.2.2/rNeighborGWAS/NAMESPACE | 1 rNeighborGWAS-1.2.2/rNeighborGWAS/R/calc_PVEnei.R | 13 - rNeighborGWAS-1.2.2/rNeighborGWAS/R/neiGWAS.R | 2 rNeighborGWAS-1.2.2/rNeighborGWAS/R/nei_lm.R |only rNeighborGWAS-1.2.2/rNeighborGWAS/R/nei_lmm.R | 1 rNeighborGWAS-1.2.2/rNeighborGWAS/R/nei_simu.R | 2 rNeighborGWAS-1.2.2/rNeighborGWAS/R/rNeighborGWAS-package.R | 3 rNeighborGWAS-1.2.2/rNeighborGWAS/README.md | 23 +- rNeighborGWAS-1.2.2/rNeighborGWAS/inst/doc/rNeighborGWAS.R | 4 rNeighborGWAS-1.2.2/rNeighborGWAS/inst/doc/rNeighborGWAS.Rmd | 4 rNeighborGWAS-1.2.2/rNeighborGWAS/inst/doc/rNeighborGWAS.html | 8 rNeighborGWAS-1.2.2/rNeighborGWAS/man/calc_PVEnei.Rd | 3 rNeighborGWAS-1.2.2/rNeighborGWAS/man/neiGWAS.Rd | 2 rNeighborGWAS-1.2.2/rNeighborGWAS/man/nei_lm.Rd |only rNeighborGWAS-1.2.2/rNeighborGWAS/man/nei_lmm.Rd | 3 rNeighborGWAS-1.2.2/rNeighborGWAS/man/nei_simu.Rd | 2 rNeighborGWAS-1.2.2/rNeighborGWAS/man/rNeighborGWAS-package.Rd | 4 rNeighborGWAS-1.2.2/rNeighborGWAS/tests/testthat/test-calc_PVEnei.R | 90 +++++----- rNeighborGWAS-1.2.2/rNeighborGWAS/tests/testthat/test-nei_lm.R |only rNeighborGWAS-1.2.2/rNeighborGWAS/vignettes/rNeighborGWAS.Rmd | 4 23 files changed, 122 insertions(+), 93 deletions(-)
Title: Add Trendline and Confidence Interval of Basic Regression Models
to Plot
Description: Plot, draw regression line and confidence interval, and show regression equation, R-square and P-value, as simple as possible, by using different models ("line2P", "line3P", "log2P", "exp2P", "exp3P", "power2P", "power3P") built in the 'trendline()' function.
Author: Weiping Mei [aut, cre, cph] (<https://orcid.org/0000-0001-6400-9862>),
Guangchuang Yu [aut] (<https://orcid.org/0000-0002-6485-8781>),
Jiangshan Lai [ctb],
Qiang Rao [ctb],
Yu Umezawa [ctb]
Maintainer: Weiping Mei <meiweipingg@163.com>
Diff between basicTrendline versions 2.0.3 dated 2018-07-26 and 2.0.5 dated 2020-11-23
DESCRIPTION | 11 - MD5 | 26 ++-- NEWS | 10 + R/SSexp2P.R | 2 R/SSexp3P.R | 2 R/SSpower2P.R | 2 R/SSpower3P.R | 2 R/trendline.R | 93 ++++++++------ man/SSexp2P.Rd | 68 +++++----- man/SSexp3P.Rd | 68 +++++----- man/SSpower2P.Rd | 68 +++++----- man/SSpower3P.Rd | 68 +++++----- man/trendline.Rd | 296 +++++++++++++++++++++++++---------------------- man/trendline_summary.Rd | 136 +++++++++++---------- 14 files changed, 454 insertions(+), 398 deletions(-)
More information about basicTrendline at CRAN
Permanent link
Title: Evaluation of Algorithm Collections Using Item Response Theory
Description: An evaluation framework for algorithm portfolios using Item Response
Theory (IRT). We use continuous and polytomous IRT models to evaluate algorithms and introduce
algorithm characteristics such as stability, effectiveness and anomalousness
(Kandanaarachchi, Smith-Miles 2020) <doi:10.13140/RG.2.2.11363.09760>.
Author: Sevvandi Kandanaarachchi [aut, cre]
(<https://orcid.org/0000-0002-0337-0395>)
Maintainer: Sevvandi Kandanaarachchi <sevvandik@gmail.com>
Diff between airt versions 0.1.0 dated 2020-05-12 and 0.2.0 dated 2020-11-23
airt-0.1.0/airt/R/algo_effectiveness.R |only airt-0.1.0/airt/R/classification-data.R |only airt-0.1.0/airt/R/irtmodel.R |only airt-0.1.0/airt/R/model_goodness.R |only airt-0.1.0/airt/data/classification.rda |only airt-0.1.0/airt/man/algo_effectiveness.Rd |only airt-0.1.0/airt/man/classification.Rd |only airt-0.1.0/airt/man/effectiveness.Rd |only airt-0.1.0/airt/man/irtmodel.Rd |only airt-0.1.0/airt/man/model_goodness.Rd |only airt-0.1.0/airt/man/model_goodness_for_algo.Rd |only airt-0.1.0/airt/man/prepare_for_plots.Rd |only airt-0.2.0/airt/DESCRIPTION | 13 - airt-0.2.0/airt/MD5 | 71 ++++- airt-0.2.0/airt/NAMESPACE | 24 + airt-0.2.0/airt/R/algo_effectiveness_crm.R |only airt-0.2.0/airt/R/algo_effectiveness_poly.R |only airt-0.2.0/airt/R/classification_cts-data.R |only airt-0.2.0/airt/R/classification_poly-data.R |only airt-0.2.0/airt/R/irt_model_continuous.R |only airt-0.2.0/airt/R/irt_model_polytomous.R |only airt-0.2.0/airt/R/latent_trait.R |only airt-0.2.0/airt/R/model_goodness_crm.R |only airt-0.2.0/airt/R/model_goodness_poly.R |only airt-0.2.0/airt/R/utils.R | 59 ++++ airt-0.2.0/airt/README.md | 164 ++++++++++++- airt-0.2.0/airt/data/classification_cts.rda |only airt-0.2.0/airt/data/classification_poly.rda |only airt-0.2.0/airt/inst/doc/airt.R | 59 ++++ airt-0.2.0/airt/inst/doc/airt.Rmd | 80 ++++++ airt-0.2.0/airt/inst/doc/airt.html | 230 +++++++++++-------- airt-0.2.0/airt/man/algo_effectiveness_crm.Rd |only airt-0.2.0/airt/man/algo_effectiveness_poly.Rd |only airt-0.2.0/airt/man/cirtmodel.Rd |only airt-0.2.0/airt/man/classification_cts.Rd |only airt-0.2.0/airt/man/classification_poly.Rd |only airt-0.2.0/airt/man/effectiveness_crm.Rd |only airt-0.2.0/airt/man/effectiveness_poly.Rd |only airt-0.2.0/airt/man/figures/README-ctsirtfit-1.png |only airt-0.2.0/airt/man/figures/README-excont-1.png |only airt-0.2.0/airt/man/figures/README-excont-2.png |only airt-0.2.0/airt/man/figures/README-excont-3.png |only airt-0.2.0/airt/man/figures/README-excont-4.png |only airt-0.2.0/airt/man/figures/README-excont-5.png |only airt-0.2.0/airt/man/figures/README-excont-6.png |only airt-0.2.0/airt/man/figures/README-latent2-1.png |only airt-0.2.0/airt/man/figures/README-latent3-1.png |only airt-0.2.0/airt/man/figures/README-latent3-2.png |only airt-0.2.0/airt/man/figures/README-latent4-1.png |only airt-0.2.0/airt/man/figures/README-latenttrait-1.png |only airt-0.2.0/airt/man/figures/README-latenttrait-2.png |only airt-0.2.0/airt/man/figures/README-latenttrait-3.png |only airt-0.2.0/airt/man/figures/README-latenttrait-4.png |only airt-0.2.0/airt/man/latent_trait_analysis.Rd |only airt-0.2.0/airt/man/model_goodness_crm.Rd |only airt-0.2.0/airt/man/model_goodness_for_algo_crm.Rd |only airt-0.2.0/airt/man/model_goodness_for_algo_poly.Rd |only airt-0.2.0/airt/man/model_goodness_poly.Rd |only airt-0.2.0/airt/man/pirtmodel.Rd |only airt-0.2.0/airt/man/prepare_for_plots_crm.Rd |only airt-0.2.0/airt/man/prepare_for_plots_poly.Rd |only airt-0.2.0/airt/vignettes/airt.Rmd | 80 ++++++ airt-0.2.0/airt/vignettes/bibliography.bib | 6 63 files changed, 624 insertions(+), 162 deletions(-)
Title: Download and Explore Datasets from UCSC Xena Data Hubs
Description: Download and explore datasets from UCSC Xena data hubs, which are
a collection of UCSC-hosted public databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others.
Databases are normalized so they can be combined, linked, filtered, explored and downloaded.
Author: Shixiang Wang [aut, cre] (<https://orcid.org/0000-0001-9855-7357>),
Xue-Song Liu [aut] (<https://orcid.org/0000-0002-7736-0077>),
Martin Morgan [ctb],
Christine Stawitz [rev] (Christine reviewed the package for ropensci,
see <https://github.com/ropensci/software-review/issues/315>),
Carl Ganz [rev] (Carl reviewed the package for ropensci, see
<https://github.com/ropensci/software-review/issues/315>)
Maintainer: Shixiang Wang <w_shixiang@163.com>
Diff between UCSCXenaTools versions 1.3.5 dated 2020-11-14 and 1.3.6 dated 2020-11-23
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 5 +++++ R/XenaDownload.R | 12 ++++++++++-- inst/doc/USCSXenaTools.html | 8 ++++---- tests/testthat/test-full-tests.R | 3 ++- 6 files changed, 29 insertions(+), 15 deletions(-)
Title: Easily Extracting Information About Your Data
Description: Makes it easy to display descriptive information on
a data set. Getting an easy overview of a data set by displaying and
visualizing sample information in different tables (e.g., time and
scope conditions). The package also provides publishable 'LaTeX' code
to present the sample information.
Author: Cosima Meyer [cre, aut],
Dennis Hammerschmidt [aut]
Maintainer: Cosima Meyer <cosima.meyer@gmail.com>
Diff between overviewR versions 0.0.6 dated 2020-08-24 and 0.0.7 dated 2020-11-23
DESCRIPTION | 6 MD5 | 34 ++-- NEWS.md | 16 ++ R/globals.R | 3 R/overview_crosstab.R | 2 R/overview_heat.R | 86 +++++++++--- R/overview_plot.R | 55 +++++-- README.md | 118 +++++++---------- inst/doc/overviewR_vignette.R | 85 ++++++------ inst/doc/overviewR_vignette.Rmd | 171 +++++++++++------------- inst/doc/overviewR_vignette.html | 256 +++++++++++++++++++++++-------------- man/figures/unnamed-chunk-19-1.png |only man/figures/unnamed-chunk-21-1.png |only man/figures/unnamed-chunk-23-1.png |binary man/figures/unnamed-chunk-24-1.png |binary man/overview_heat.Rd | 15 +- man/overview_plot.Rd | 22 ++- tests/testthat/test-check_output.R | 17 ++ vignettes/overviewR_vignette.Rmd | 171 +++++++++++------------- 19 files changed, 615 insertions(+), 442 deletions(-)
Title: Tools for the Analysis of Air Pollution Data
Description: Tools to analyse, interpret and understand air
pollution data. Data are typically hourly time series
and both monitoring data and dispersion model output
can be analysed. Many functions can also be applied to
other data, including meteorological and traffic data.
Author: David Carslaw [aut, cre],
Karl Ropkins [aut]
Maintainer: David Carslaw <david.carslaw@york.ac.uk>
Diff between openair versions 2.7-6 dated 2020-10-01 and 2.8-0 dated 2020-11-23
DESCRIPTION | 8 MD5 | 20 - NAMESPACE | 1 R/polarCluster.R | 829 +++++++++++++++++++++++++++------------------------- R/polarDiff.R |only R/polarPlot.R | 2 R/timeAverage.R | 277 ++++++++--------- R/windRose.R | 90 ++--- R/zzz.R | 3 man/polarCluster.Rd | 228 +++++++------- man/polarDiff.Rd |only man/timeAverage.Rd | 283 ++++++++--------- 12 files changed, 889 insertions(+), 852 deletions(-)
Title: The Tidymodels Extension for Time Series Modeling
Description: The time series forecasting framework for use with the 'tidymodels' ecosystem.
Models include ARIMA, Exponential Smoothing, and additional time series models
from the 'forecast' and 'prophet' packages. Refer to "Forecasting Principles & Practice, Second edition"
(<https://otexts.com/fpp2/>).
Refer to "Prophet: forecasting at scale"
(<https://research.fb.com/blog/2017/02/prophet-forecasting-at-scale/>.).
Author: Matt Dancho [aut, cre],
Business Science [cph]
Maintainer: Matt Dancho <mdancho@business-science.io>
Diff between modeltime versions 0.3.1 dated 2020-11-09 and 0.4.0 dated 2020-11-23
modeltime-0.3.1/modeltime/data/arima_workflow_tuned.rda |only modeltime-0.3.1/modeltime/man/arima_workflow_tuned.Rd |only modeltime-0.4.0/modeltime/DESCRIPTION | 12 - modeltime-0.4.0/modeltime/MD5 | 42 ++-- modeltime-0.4.0/modeltime/NAMESPACE | 8 modeltime-0.4.0/modeltime/NEWS.md | 13 + modeltime-0.4.0/modeltime/R/00_global_variables.R | 2 modeltime-0.4.0/modeltime/R/data.R | 15 - modeltime-0.4.0/modeltime/R/helpers-modeltime_table.R | 97 +++++++++- modeltime-0.4.0/modeltime/R/modeltime-recursive.R |only modeltime-0.4.0/modeltime/inst/doc/extending-modeltime.html | 10 - modeltime-0.4.0/modeltime/inst/doc/getting-started-with-modeltime.R | 6 modeltime-0.4.0/modeltime/inst/doc/getting-started-with-modeltime.Rmd | 6 modeltime-0.4.0/modeltime/inst/doc/getting-started-with-modeltime.html | 78 ++++---- modeltime-0.4.0/modeltime/man/add_modeltime_model.Rd | 11 + modeltime-0.4.0/modeltime/man/combine_modeltime_tables.Rd | 9 modeltime-0.4.0/modeltime/man/figures/time-series-course.jpg |only modeltime-0.4.0/modeltime/man/pluck_modeltime_model.Rd | 9 modeltime-0.4.0/modeltime/man/predict.recursive.Rd |only modeltime-0.4.0/modeltime/man/recursive.Rd |only modeltime-0.4.0/modeltime/man/update_model_description.Rd | 17 + modeltime-0.4.0/modeltime/man/update_modeltime_model.Rd |only modeltime-0.4.0/modeltime/tests/testthat.R | 1 modeltime-0.4.0/modeltime/tests/testthat/test-algo-prophet_boost.R | 2 modeltime-0.4.0/modeltime/tests/testthat/test-recursive.R |only modeltime-0.4.0/modeltime/vignettes/getting-started-with-modeltime.Rmd | 6 26 files changed, 243 insertions(+), 101 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-08-10 0.4
2020-06-14 0.3.0
2020-05-13 0.2
2019-08-01 0.1.0
Title: Access Cropland Data Layer Data via the 'CropScape' Web Service
Description: Interface to easily access Cropland Data Layer (CDL) data for any area of interest via the 'CropScape' <https://nassgeodata.gmu.edu/CropScape/> web service.
Author: Bowen Chen [aut, cre] (<https://orcid.org/0000-0003-0370-2756>),
Benjamin Gramig [ctb],
Taro Mieno [ctb]
Maintainer: Bowen Chen <bwchen0719@gmail.com>
Diff between CropScapeR versions 1.1.0 dated 2020-08-01 and 1.1.2 dated 2020-11-23
DESCRIPTION | 12 MD5 | 26 - NAMESPACE | 16 NEWS.md |only R/GetCDLComp.R | 2 R/GetCDLData.R | 377 ++++++++++---------- R/GetCDLImage.R | 2 R/GetCDLStat.R | 2 R/utils.R | 980 ++++++++++++++++++++++++++--------------------------- R/zzz.R | 24 - README.md |only man/GetCDLComp.Rd | 2 man/GetCDLData.Rd | 33 - man/GetCDLImage.Rd | 2 man/GetCDLStat.Rd | 2 15 files changed, 738 insertions(+), 742 deletions(-)
Title: eBird Data Extraction and Processing in R
Description: Extract and process bird sightings records from
eBird (<http://ebird.org>), an online tool for recording bird
observations. Public access to the full eBird database is via the
eBird Basic Dataset (EBD; see <http://ebird.org/ebird/data/download>
for access), a downloadable text file. This package is an interface to
AWK for extracting data from the EBD based on taxonomic, spatial, or
temporal filters, to produce a manageable file size that can be
imported into R.
Author: Matthew Strimas-Mackey [aut, cre]
(<https://orcid.org/0000-0001-8929-7776>),
Eliot Miller [aut],
Wesley Hochachka [aut],
Cornell Lab of Ornithology [cph]
Maintainer: Matthew Strimas-Mackey <mes335@cornell.edu>
Diff between auk versions 0.4.2 dated 2020-10-19 and 0.4.3 dated 2020-11-23
DESCRIPTION | 6 MD5 | 32 - NEWS.md | 4 R/auk-filter.r | 14 R/auk-select.r | 2 R/auk-set-ebd-path.r | 4 R/auk-zerofill.r | 29 - R/filter-repeat-visits.r | 4 R/get-ebird-taxonomy.r | 9 R/read.r | 14 build/vignette.rds |binary inst/doc/auk.html | 770 +++++++++++++++---------------- inst/doc/development.html | 68 +- man/auk_set_ebd_path.Rd | 2 tests/testthat/test_ebird-species.r | 5 tests/testthat/test_filters.r | 75 +-- tests/testthat/test_get-ebird-taxonomy.r | 6 17 files changed, 518 insertions(+), 526 deletions(-)
Title: Epidemiological Data Analysis
Description: This is a tool for epidemiologist, medical data analyst,
medical or public health professionals. It contains three domains of functions:
1) data management, 2) statistical analysis and 3) calculating
epidemiological measures.
Author: Myo Minn Oo [aut, cre] (<https://orcid.org/0000-0003-4089-016X>)
Maintainer: Myo Minn Oo <dr.myominnoo@gmail.com>
Diff between mStats versions 3.2.2 dated 2020-03-31 and 3.4.0 dated 2020-11-23
mStats-3.2.2/mStats/NEWS.md |only mStats-3.2.2/mStats/R/append.R |only mStats-3.2.2/mStats/R/codebook.R |only mStats-3.2.2/mStats/R/dates.R |only mStats-3.2.2/mStats/R/diagTest.R |only mStats-3.2.2/mStats/R/duplicates.R |only mStats-3.2.2/mStats/R/egen.R |only mStats-3.2.2/mStats/R/esttab.R |only mStats-3.2.2/mStats/R/expand2.R |only mStats-3.2.2/mStats/R/expandTables.R |only mStats-3.2.2/mStats/R/export.R |only mStats-3.2.2/mStats/R/generate.R |only mStats-3.2.2/mStats/R/helpers.R |only mStats-3.2.2/mStats/R/keep.R |only mStats-3.2.2/mStats/R/labelVar.R |only mStats-3.2.2/mStats/R/lagRows.R |only mStats-3.2.2/mStats/R/leftJoin.R |only mStats-3.2.2/mStats/R/logistic.R |only mStats-3.2.2/mStats/R/mhor.R |only mStats-3.2.2/mStats/R/mhrr.R |only mStats-3.2.2/mStats/R/recode.R |only mStats-3.2.2/mStats/R/regress.R |only mStats-3.2.2/mStats/R/rename.R |only mStats-3.2.2/mStats/R/replace.R |only mStats-3.2.2/mStats/R/scoreCI.R |only mStats-3.2.2/mStats/R/summ.R |only mStats-3.2.2/mStats/R/tab.R |only mStats-3.2.2/mStats/R/tabOdds.R |only mStats-3.2.2/mStats/R/tabRates.R |only mStats-3.2.2/mStats/R/tabRisks.R |only mStats-3.2.2/mStats/README.md |only mStats-3.2.2/mStats/man/addDashLines.Rd |only mStats-3.2.2/mStats/man/diagTest.Rd |only mStats-3.2.2/mStats/man/enquos.Rd |only mStats-3.2.2/mStats/man/esttab.Rd |only mStats-3.2.2/mStats/man/expandTables.Rd |only mStats-3.2.2/mStats/man/export.Rd |only mStats-3.2.2/mStats/man/keep.Rd |only mStats-3.2.2/mStats/man/labelVar.Rd |only mStats-3.2.2/mStats/man/lagRows.Rd |only mStats-3.2.2/mStats/man/leftJoin.Rd |only mStats-3.2.2/mStats/man/logistic.Rd |only mStats-3.2.2/mStats/man/plotRisks.Rd |only mStats-3.2.2/mStats/man/printText.Rd |only mStats-3.2.2/mStats/man/rename.Rd |only mStats-3.2.2/mStats/man/rowColOrder.Rd |only mStats-3.2.2/mStats/man/scoreCI.Rd |only mStats-3.2.2/mStats/man/splitByColon.Rd |only mStats-3.2.2/mStats/man/splitTables.Rd |only mStats-3.2.2/mStats/man/tabOdds.Rd |only mStats-3.2.2/mStats/man/tabRisks.Rd |only mStats-3.4.0/mStats/DESCRIPTION | 18 - mStats-3.4.0/mStats/MD5 | 96 ++------- mStats-3.4.0/mStats/NAMESPACE | 110 +++++------ mStats-3.4.0/mStats/R/mStats.R |only mStats-3.4.0/mStats/man/append.Rd | 35 +-- mStats-3.4.0/mStats/man/codebook.Rd | 52 +---- mStats-3.4.0/mStats/man/duplicates.Rd | 63 +----- mStats-3.4.0/mStats/man/egen.Rd | 65 +++--- mStats-3.4.0/mStats/man/expand2.Rd | 24 -- mStats-3.4.0/mStats/man/expandtbl.Rd |only mStats-3.4.0/mStats/man/formatDate.Rd | 20 +- mStats-3.4.0/mStats/man/generate.Rd | 49 ++-- mStats-3.4.0/mStats/man/helpers.Rd |only mStats-3.4.0/mStats/man/histogram.Rd |only mStats-3.4.0/mStats/man/ilog.Rd |only mStats-3.4.0/mStats/man/label.Rd |only mStats-3.4.0/mStats/man/lag.Rd |only mStats-3.4.0/mStats/man/logit.Rd |only mStats-3.4.0/mStats/man/mhor.Rd | 68 +++--- mStats-3.4.0/mStats/man/mhrr.Rd | 265 ++++++--------------------- mStats-3.4.0/mStats/man/n_.Rd |only mStats-3.4.0/mStats/man/recode.Rd | 77 +++---- mStats-3.4.0/mStats/man/regress.Rd | 203 +++++++++++++++----- mStats-3.4.0/mStats/man/replace.Rd | 59 ++---- mStats-3.4.0/mStats/man/scatterPlotMatrix.Rd |only mStats-3.4.0/mStats/man/strate.Rd | 56 ++++- mStats-3.4.0/mStats/man/summ.Rd | 110 +++++------ mStats-3.4.0/mStats/man/summary.Rd |only mStats-3.4.0/mStats/man/tab.Rd | 111 ++++------- 80 files changed, 682 insertions(+), 799 deletions(-)
Title: Methods for Fast Multiple Change-Point Detection and Estimation
Description: A developing software suite for multiple change-point detection/estimation (data segmentation) in data sequences.
Author: Andreas Anastasiou [aut],
Yining Chen [aut, cre],
Haeran Cho [aut],
Piotr Fryzlewicz [aut]
Maintainer: Yining Chen <y.chen101@lse.ac.uk>
Diff between breakfast versions 2.0 dated 2020-11-03 and 2.1 dated 2020-11-23
breakfast-2.0/breakfast/inst/doc/my-vignette.R |only breakfast-2.0/breakfast/inst/doc/my-vignette.Rmd |only breakfast-2.0/breakfast/inst/doc/my-vignette.html |only breakfast-2.0/breakfast/vignettes/my-vignette.Rmd |only breakfast-2.1/breakfast/DESCRIPTION | 11 +++----- breakfast-2.1/breakfast/MD5 | 20 +++++++-------- breakfast-2.1/breakfast/R/breakfast-package.R | 4 +-- breakfast-2.1/breakfast/R/main.R | 2 - breakfast-2.1/breakfast/build/vignette.rds |binary breakfast-2.1/breakfast/inst/doc/breakfast-vignette.R |only breakfast-2.1/breakfast/inst/doc/breakfast-vignette.Rmd |only breakfast-2.1/breakfast/inst/doc/breakfast-vignette.html |only breakfast-2.1/breakfast/man/breakfast-package.Rd | 4 +-- breakfast-2.1/breakfast/man/breakfast.Rd | 2 - breakfast-2.1/breakfast/vignettes/breakfast-vignette.Rmd |only 15 files changed, 21 insertions(+), 22 deletions(-)