Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-17 0.0.13
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-28 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-08-01 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-11 0.0.10
Title: Meta-Analysis using Structural Equation Modeling
Description: A collection of functions for conducting meta-analysis using a
structural equation modeling (SEM) approach via the 'OpenMx' and
'lavaan' packages. It also implements various procedures to
perform meta-analytic structural equation modeling on the
correlation and covariance matrices,
see Cheung (2015) <doi:10.3389/fpsyg.2014.01521>.
Author: Mike Cheung [aut, cre] (<https://orcid.org/0000-0003-0113-0758>)
Maintainer: Mike Cheung <mikewlcheung@nus.edu.sg>
Diff between metaSEM versions 1.2.4 dated 2020-06-14 and 1.2.5 dated 2020-11-29
DESCRIPTION | 12 MD5 | 55 + NAMESPACE | 4 NEWS | 13 R/Cor2DataFrame.R |only R/calEffSizes.R |only R/create.modMatrix.R |only R/meta2semPlot.R | 2 R/osmasem.R | 106 +-- R/rerun.R | 14 README.md | 6 build/vignette.rds |binary data/Cooke16.R | 374 ++++++++---- data/Mathieu15.R |only inst/CITATION | 4 inst/doc/Examples.html | 1162 +++++++++++++++++++--------------------- inst/doc/metaSEM.pdf |binary man/BCG.Rd | 2 man/Cooke16.Rd | 9 man/Cor2DataFrame.Rd | 32 - man/Mak09.Rd | 2 man/Mathieu15.Rd |only man/Nohe15.Rd | 8 man/calEffSizes.Rd |only man/create.V.Rd | 2 man/create.modMatrix.Rd |only man/metaSEM-package.Rd | 8 man/osmasem.Rd | 11 man/rerun.Rd | 3 man/smdMES.Rd | 2 man/smdMTS.Rd | 2 tests/testthat/test_utilities.R | 26 32 files changed, 997 insertions(+), 862 deletions(-)
Title: Access and Process Data and Documents of the Manifesto Project
Description: Provides access to coded election programmes from the Manifesto
Corpus and to the Manifesto Project's Main Dataset and routines to analyse this
data. The Manifesto Project <https://manifesto-project.wzb.eu> collects and
analyses election programmes across time and space to measure the political
preferences of parties. The Manifesto Corpus contains the collected and
annotated election programmes in the Corpus format of the package 'tm' to enable
easy use of text processing and text mining functionality. Specific functions
for scaling of coded political texts are included.
Author: Jirka Lewandowski [aut],
Nicolas Merz [aut],
Sven Regel [aut, cre],
Pola Lehmann [ctb],
Paul Muscat [ctb]
Maintainer: Sven Regel <sven.regel@wzb.eu>
Diff between manifestoR versions 1.4.0 dated 2020-04-21 and 1.5.0 dated 2020-11-29
manifestoR-1.4.0/manifestoR/inst/extdata/fk_issue_structure.sav |only manifestoR-1.5.0/manifestoR/DESCRIPTION | 30 + manifestoR-1.5.0/manifestoR/MD5 | 54 +-- manifestoR-1.5.0/manifestoR/NAMESPACE | 21 + manifestoR-1.5.0/manifestoR/NEWS | 10 manifestoR-1.5.0/manifestoR/R/cache.R | 6 manifestoR-1.5.0/manifestoR/R/clarity.R | 18 - manifestoR-1.5.0/manifestoR/R/codebook.R | 27 + manifestoR-1.5.0/manifestoR/R/codes.R | 21 + manifestoR-1.5.0/manifestoR/R/corpus.R | 4 manifestoR-1.5.0/manifestoR/R/dataset.R | 18 - manifestoR-1.5.0/manifestoR/R/db_api.R | 15 manifestoR-1.5.0/manifestoR/R/issue_attention.R | 2 manifestoR-1.5.0/manifestoR/R/manifesto.R | 44 +- manifestoR-1.5.0/manifestoR/R/manifestoR-defunct.R |only manifestoR-1.5.0/manifestoR/R/manifestoR-package.r | 5 manifestoR-1.5.0/manifestoR/R/nicheness.R | 16 - manifestoR-1.5.0/manifestoR/R/scaling_bootstrap.R | 48 +-- manifestoR-1.5.0/manifestoR/R/scaling_functions.R | 159 +++++----- manifestoR-1.5.0/manifestoR/R/scaling_general.R | 42 ++ manifestoR-1.5.0/manifestoR/inst/doc/manifestoRworkflow.pdf |binary manifestoR-1.5.0/manifestoR/inst/extdata/fk_issue_structure_2015.csv |only manifestoR-1.5.0/manifestoR/inst/extdata/fk_issue_structure_2019.csv |only manifestoR-1.5.0/manifestoR/man/categories.Rd | 8 manifestoR-1.5.0/manifestoR/man/franzmann_kaiser.Rd | 27 + manifestoR-1.5.0/manifestoR/man/mp_bootstrap.Rd | 13 manifestoR-1.5.0/manifestoR/man/mp_codebook.Rd | 17 - manifestoR-1.5.0/manifestoR/man/mp_setapikey.Rd | 2 manifestoR-1.5.0/manifestoR/man/scale.Rd | 19 + manifestoR-1.5.0/manifestoR/vignettes/manifestoRworkflow.Rmd | 85 ++++- 30 files changed, 458 insertions(+), 253 deletions(-)
Title: Ancient Demographic Modelling Using Radiocarbon
Description: Provides tools to directly model underlying population dynamics using date datasets (radiocarbon and other) with a Continuous Piecewise Linear (CPL) model framework, and model comparison framework using BIC. Package also calibrates 14C samples, generates Summed Probability Distributions (SPD), and performs SPD simulation analysis to generate a Goodness-of-fit test for the best selected model.
Author: Adrian Timpson [aut, cre] (<https://orcid.org/0000-0003-0292-8729>)
Maintainer: Adrian Timpson <a.timpson@ucl.ac.uk>
Diff between ADMUR versions 1.0.0 dated 2020-11-18 and 1.0.1 dated 2020-11-29
ADMUR-1.0.0/ADMUR/vignettes/vignette.3CPL.MCMC.RData |only ADMUR-1.0.1/ADMUR/DESCRIPTION | 14 ADMUR-1.0.1/ADMUR/MD5 | 82 - ADMUR-1.0.1/ADMUR/NAMESPACE | 5 ADMUR-1.0.1/ADMUR/NEWS.md | 46 ADMUR-1.0.1/ADMUR/R/functions.R | 313 ++-- ADMUR-1.0.1/ADMUR/README.md | 49 ADMUR-1.0.1/ADMUR/build/ADMUR.pdf |only ADMUR-1.0.1/ADMUR/build/vignette.rds |binary ADMUR-1.0.1/ADMUR/data/data1.RData |only ADMUR-1.0.1/ADMUR/data/data2.RData |only ADMUR-1.0.1/ADMUR/data/data3.RData |only ADMUR-1.0.1/ADMUR/inst/doc/guide.R | 158 +- ADMUR-1.0.1/ADMUR/inst/doc/guide.Rmd | 337 +++- ADMUR-1.0.1/ADMUR/inst/doc/guide.html | 711 +++++----- ADMUR-1.0.1/ADMUR/inst/doc/replicating-timpson-rstb.2020.R | 8 ADMUR-1.0.1/ADMUR/inst/doc/replicating-timpson-rstb.2020.Rmd | 18 ADMUR-1.0.1/ADMUR/inst/doc/replicating-timpson-rstb.2020.html | 134 - ADMUR-1.0.1/ADMUR/man/SAAD.Rd | 2 ADMUR-1.0.1/ADMUR/man/SPDsimulationTest.Rd | 22 ADMUR-1.0.1/ADMUR/man/checkData.Rd |only ADMUR-1.0.1/ADMUR/man/convertPars.Rd | 64 ADMUR-1.0.1/ADMUR/man/data1.Rd |only ADMUR-1.0.1/ADMUR/man/data2.Rd |only ADMUR-1.0.1/ADMUR/man/data3.Rd |only ADMUR-1.0.1/ADMUR/man/estimateDataDomain.Rd | 10 ADMUR-1.0.1/ADMUR/man/intcal13.Rd | 4 ADMUR-1.0.1/ADMUR/man/intcal20.Rd | 6 ADMUR-1.0.1/ADMUR/man/loglik.Rd | 2 ADMUR-1.0.1/ADMUR/man/mcmc.Rd | 14 ADMUR-1.0.1/ADMUR/man/objectiveFunction.Rd | 9 ADMUR-1.0.1/ADMUR/man/phaseCalibrator.Rd | 6 ADMUR-1.0.1/ADMUR/man/plotCalArray.Rd | 3 ADMUR-1.0.1/ADMUR/man/relativeRate.Rd | 2 ADMUR-1.0.1/ADMUR/man/shcal13.Rd | 6 ADMUR-1.0.1/ADMUR/man/shcal20.Rd | 6 ADMUR-1.0.1/ADMUR/man/sinewavePDF.Rd |only ADMUR-1.0.1/ADMUR/man/toy.Rd | 4 ADMUR-1.0.1/ADMUR/tools |only ADMUR-1.0.1/ADMUR/vignettes/four_logos.png |only ADMUR-1.0.1/ADMUR/vignettes/further_models.png |only ADMUR-1.0.1/ADMUR/vignettes/guide.Rmd | 337 +++- ADMUR-1.0.1/ADMUR/vignettes/mcmc_2D.png |only ADMUR-1.0.1/ADMUR/vignettes/mcmc_chain.png |only ADMUR-1.0.1/ADMUR/vignettes/mcmc_joint.png |only ADMUR-1.0.1/ADMUR/vignettes/mcmc_posteriors.png |only ADMUR-1.0.1/ADMUR/vignettes/replicating-timpson-rstb.2020.Rmd | 18 ADMUR-1.0.1/ADMUR/vignettes/vignette.3CPL.JDEoptim.best.RData |binary ADMUR-1.0.1/ADMUR/vignettes/vignette.model.comparison.RData |binary 49 files changed, 1468 insertions(+), 922 deletions(-)
Title: Short Sprints
Description: Create short sprint (<6sec) profiles using the split times or the radar gun data.
Mono-exponential equation is used to estimate maximal sprinting speed (MSS), relative acceleration (TAU),
and other parameters such us maximal acceleration (MAC) and maximal relative power (PMAX). These parameters
can be used to predict kinematic and kinetics variables and to compare individuals. The modeling method utilized
in this package is based on the works of Chelly SM, Denis C. (2001) <doi: 10.1097/00005768-200102000-00024>,
Clark KP, Rieger RH, Bruno RF, Stearne DJ. (2017) <doi: 10.1519/JSC.0000000000002081>,
Furusawa K, Hill AV, Parkinson JL (1927) <doi: 10.1098/rspb.1927.0035>,
Greene PR. (1986) <doi: 10.1016/0025-5564(86)90063-5>, and
Samozino P. (2018) <doi: 10.1007/978-3-319-05633-3_11>.
Author: Mladen Jovanović [aut, cre],
Jason D. Vescovi [dtc]
Maintainer: Mladen Jovanović <coach.mladen.jovanovic@gmail.com>
Diff between shorts versions 1.1.3 dated 2020-10-29 and 1.1.4 dated 2020-11-29
shorts-1.1.3/shorts/R/get_FV_summary.R |only shorts-1.1.4/shorts/DESCRIPTION | 8 shorts-1.1.4/shorts/MD5 | 77 +- shorts-1.1.4/shorts/NAMESPACE | 4 shorts-1.1.4/shorts/NEWS.md | 11 shorts-1.1.4/shorts/R/get_FV_profile.R |only shorts-1.1.4/shorts/R/mixed_model_using_radar.R | 14 shorts-1.1.4/shorts/R/mixed_model_using_splits.R | 9 shorts-1.1.4/shorts/R/model_using_radar.R | 12 shorts-1.1.4/shorts/R/model_using_splits.R | 12 shorts-1.1.4/shorts/R/predict_functions.R | 68 +- shorts-1.1.4/shorts/R/shorts_S3.R | 297 ++++++++++ shorts-1.1.4/shorts/R/shorts_constructors.R | 34 + shorts-1.1.4/shorts/README.md | 222 +++++-- shorts-1.1.4/shorts/build/vignette.rds |binary shorts-1.1.4/shorts/inst/CITATION | 4 shorts-1.1.4/shorts/inst/doc/sprint-corrections.html | 95 --- shorts-1.1.4/shorts/man/figures/README-unnamed-chunk-12-1.png |binary shorts-1.1.4/shorts/man/figures/README-unnamed-chunk-13-1.png |binary shorts-1.1.4/shorts/man/figures/README-unnamed-chunk-14-1.png |binary shorts-1.1.4/shorts/man/figures/README-unnamed-chunk-15-1.png |binary shorts-1.1.4/shorts/man/figures/README-unnamed-chunk-16-1.png |binary shorts-1.1.4/shorts/man/figures/README-unnamed-chunk-17-1.png |binary shorts-1.1.4/shorts/man/figures/README-unnamed-chunk-18-1.png |binary shorts-1.1.4/shorts/man/figures/README-unnamed-chunk-19-1.png |binary shorts-1.1.4/shorts/man/figures/README-unnamed-chunk-20-1.png |only shorts-1.1.4/shorts/man/figures/README-unnamed-chunk-21-1.png |binary shorts-1.1.4/shorts/man/figures/README-unnamed-chunk-22-1.png |binary shorts-1.1.4/shorts/man/figures/README-unnamed-chunk-24-1.png |binary shorts-1.1.4/shorts/man/figures/README-unnamed-chunk-25-1.png |only shorts-1.1.4/shorts/man/figures/README-unnamed-chunk-26-1.png |only shorts-1.1.4/shorts/man/figures/README-unnamed-chunk-5-1.png |binary shorts-1.1.4/shorts/man/figures/README-unnamed-chunk-7-1.png |binary shorts-1.1.4/shorts/man/figures/README-unnamed-chunk-8-1.png |binary shorts-1.1.4/shorts/man/get_FV_profile.Rd | 10 shorts-1.1.4/shorts/man/mixed_model_radar.Rd | 14 shorts-1.1.4/shorts/man/mixed_model_split_times.Rd | 9 shorts-1.1.4/shorts/man/model_radar.Rd | 12 shorts-1.1.4/shorts/man/model_split_times.Rd | 12 shorts-1.1.4/shorts/man/plot.shorts_fv_profile.Rd |only shorts-1.1.4/shorts/man/plot.shorts_mixed_model.Rd |only shorts-1.1.4/shorts/man/plot.shorts_model.Rd |only shorts-1.1.4/shorts/man/predict_kinematics.Rd | 2 shorts-1.1.4/shorts/man/print.shorts_fv_profile.Rd |only 44 files changed, 706 insertions(+), 220 deletions(-)
Title: Generalized Correlations and Various Causal Paths
Description: Since causal paths from data are important for all sciences, the
package provides many sophisticated functions. causeSummBlk()
gives easy-to-interpret causal paths. Let Z denote control variables and compare
two flipped kernel regressions: X=f(Y, Z)+e1 and Y=g(X,Z)+e2. Our criterion Cr1
says that if |e1*Y|>|e2*X| then variation in X is more "exogenous or independent"
than in Y and causal path is X to Y. Criterion Cr2 requires |e2|<|e1|. These
inequalities between many absolute values are quantified by four orders of
stochastic dominance. Our third criterion Cr3 for the causal path X to Y
requires new generalized partial correlations to satisfy |r*(x|y,z)|< |r*(y|x,z)|.
The function parcorBMany() reports generalized partials between the first
variable and all others. The package provides several R functions including
get0outliers() for outlier detection, bigfp() for numerical integration by the
trapezoidal rule, stochdom2() for stochastic dominance, pillar3D() for 3D charts,
canonRho() for generalized canonical correlations, depMeas() measures nonlinear
dependence, and causeSummary(mtx) reports summary of causal paths among matrix columns
is easiest to use. Several functions whose names begin with 'boot' provide bootstrap
statistical inference including a new bootGcRsq() test for "Granger-causality"
allowing nonlinear relations. See Vinod (2019) <doi:10.1080/03610918.2015.1122048>.
Author: Prof. H. D. Vinod, Fordham University, NY.
Maintainer: H. D. Vinod <vinod@fordham.edu>
Diff between generalCorr versions 1.1.6 dated 2020-11-20 and 1.1.7 dated 2020-11-29
DESCRIPTION | 8 ++++---- MD5 | 19 +++++++++++-------- NEWS | 4 ++++ R/bootGcRsq.R | 5 ++++- build/vignette.rds |binary inst/doc/generalCorr-vignette.pdf |binary inst/doc/generalCorr-vignette2.pdf |binary inst/doc/generalCorr-vignette3.pdf |binary inst/doc/generalCorr-vignette5.pdf |only inst/doc/generalCorr-vignette5.pdf.asis |only man/bootGcRsq.Rd | 5 ++++- vignettes/generalCorr-vignette5.pdf.asis |only 12 files changed, 27 insertions(+), 14 deletions(-)
Title: Create Tidy Data Frames of Marginal Effects for 'ggplot' from
Model Outputs
Description: Compute marginal effects from statistical models and returns the
result as tidy data frames. These data frames are ready to use with the
'ggplot2'-package. Marginal effects can be calculated for many different
models. Interaction terms, splines and polynomial terms are also supported.
The main functions are ggpredict(), ggemmeans() and ggeffect(). There is a
generic plot()-method to plot the results using 'ggplot2'.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>),
Frederik Aust [ctb] (<https://orcid.org/0000-0003-4900-788X>),
Sam Crawley [ctb] (<https://orcid.org/0000-0002-7847-0411>),
Mattan S. Ben-Shachar [ctb] (<https://orcid.org/0000-0002-4287-4801>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between ggeffects versions 0.16.0 dated 2020-09-13 and 1.0.0 dated 2020-11-29
DESCRIPTION | 19 MD5 | 167 +++--- NAMESPACE | 8 NEWS.md | 103 --- R/emmeans_prediction_data.R | 33 + R/get_predictions_glmmTMB.R | 10 R/ggeffect.R | 4 R/ggemmeans.R | 6 R/ggemmeans_add_confint.R | 42 + R/ggemmeans_zi_predictions.R | 10 R/ggpredict.R | 21 R/moderator_pattern.R | 44 + R/pool_predictions.R |only R/predictions.R | 2 R/print.R | 19 R/residualize_over_grid.R | 43 + R/standard_error_predictions.R | 2 R/utils_get_data_grid.R | 46 + R/utils_ggpredict.R | 36 + R/utils_model_function.R | 1 R/utils_set_attr.R | 3 R/vcov.R | 21 build/partial.rdb |binary build/vignette.rds |binary inst/doc/ggeffects.html | 633 ++++++++++++----------- inst/doc/introduction_effectsatvalues.R | 6 inst/doc/introduction_effectsatvalues.Rmd | 10 inst/doc/introduction_effectsatvalues.html | 318 ++++++----- inst/doc/introduction_partial_residuals.html | 52 + inst/doc/introduction_plotcustomize.html | 52 + inst/doc/introduction_plotmethod.html | 52 + inst/doc/introduction_randomeffects.html | 351 +++++++----- inst/doc/practical_logisticmixedmodel.html | 116 ++-- inst/doc/practical_robustestimation.R | 2 inst/doc/practical_robustestimation.Rmd | 4 inst/doc/practical_robustestimation.html | 216 ++++--- inst/doc/technical_differencepredictemmeans.R | 9 inst/doc/technical_differencepredictemmeans.Rmd | 24 inst/doc/technical_differencepredictemmeans.html | 281 ++++++---- inst/doc/technical_stata.html | 52 + man/ggpredict.Rd | 21 man/pool_predictions.Rd |only man/residualize_over_grid.Rd |only tests/testthat/test-Gam2.R | 8 tests/testthat/test-MCMCglmm.R | 2 tests/testthat/test-MixMod.R | 7 tests/testthat/test-backtransform_response.R |only tests/testthat/test-betareg.R | 6 tests/testthat/test-brms-categ-cum.R | 2 tests/testthat/test-brms-ppd.R | 43 - tests/testthat/test-clean_vars.R | 2 tests/testthat/test-clm2.R | 2 tests/testthat/test-condition.R | 33 - tests/testthat/test-contrasts.R | 2 tests/testthat/test-contrasts2.R | 2 tests/testthat/test-contrasts3.R | 2 tests/testthat/test-decimals.R | 2 tests/testthat/test-gamm.R | 5 tests/testthat/test-gamm4.R | 2 tests/testthat/test-gee.R | 2 tests/testthat/test-geeglm.R | 4 tests/testthat/test-get_titles.R | 2 tests/testthat/test-glm.R | 52 - tests/testthat/test-glmer.R | 101 ++- tests/testthat/test-glmmTMB.R | 82 +- tests/testthat/test-glmrob_base.R | 3 tests/testthat/test-ivreg.R | 2 tests/testthat/test-linear-models.R | 242 +++++--- tests/testthat/test-lmer.R | 36 - tests/testthat/test-lmrob_base.R | 3 tests/testthat/test-negbin.R | 18 tests/testthat/test-nlme.R | 22 tests/testthat/test-offset_zeroinfl.R |only tests/testthat/test-plot.R | 2 tests/testthat/test-poisson.R | 14 tests/testthat/test-polr.R | 2 tests/testthat/test-poly-zeroinf.R | 112 ++-- tests/testthat/test-print.R | 104 +++ tests/testthat/test-rstanarm-ppd.R | 21 tests/testthat/test-rstanarm.R | 58 +- tests/testthat/test-survey.R | 12 tests/testthat/test-svyglmnb.R | 6 tests/testthat/test-vgam.R | 2 tests/testthat/test-zeroinfl.R | 73 +- vignettes/introduction_effectsatvalues.Rmd | 10 vignettes/practical_robustestimation.Rmd | 4 vignettes/technical_differencepredictemmeans.Rmd | 24 87 files changed, 2415 insertions(+), 1557 deletions(-)
Title: Network Meta-Analysis Using Bayesian Methods
Description: Network meta-analyses (mixed treatment comparisons) in the Bayesian
framework using JAGS. Includes methods to assess heterogeneity and
inconsistency, and a number of standard visualizations.
van Valkenhoef et al. (2012) <doi:10.1002/jrsm.1054>;
van Valkenhoef et al. (2015) <doi:10.1002/jrsm.1167>.
Author: Gert van Valkenhoef, Joel Kuiper
Maintainer: Gert van Valkenhoef <gert@gertvv.nl>
Diff between gemtc versions 0.8-7 dated 2020-08-10 and 0.8-8 dated 2020-11-29
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- R/mtc.model.R | 2 +- R/mtc.model.use.R | 4 ++++ tests/testthat/test-unit-mtc.model_columns.R | 1 + tests/testthat/test-unit-mtc.network_data.re.R | 1 + tests/testthat/test-unit-nodesplit.R | 1 + tests/testthat/test-unit-relative.effect.R | 1 + 8 files changed, 21 insertions(+), 13 deletions(-)
Title: A Package for Asset Projection
Description: Presents a "Scenarios" class containing
general parameters, risk parameters and projection results.
Risk parameters are gathered together into a ParamsScenarios
sub-object. The general process for using this package is to
set all needed parameters in a Scenarios object, use the
customPathsGeneration method to proceed to the projection, then
use xxx_PriceDistribution() methods to get asset prices.
Author: Jean-Charles Croix, Thierry Moudiki, Fr�d�ric Planchet, Wassim
Youssef
Maintainer: Wassim Youssef <Wassim.G.Youssef@gmail.com>
Diff between ESG versions 1.1 dated 2020-11-05 and 1.2 dated 2020-11-29
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/Methods_PathsGeneration.R | 4 ++-- man/ESG-package.Rd | 4 ++-- 4 files changed, 11 insertions(+), 11 deletions(-)
Title: Tools for Preprocessing Visual World Data
Description: Gaze data from the Visual World Paradigm requires significant
preprocessing prior to plotting and analyzing the data. This package
provides functions for preparing visual world eye-tracking data for
statistical analysis and plotting. It can prepare data for linear
analyses (e.g., ANOVA, Gaussian-family LMER, Gaussian-family GAMM) as
well as logistic analyses (e.g., binomial-family LMER and binomial-family GAMM).
Additionally, it contains various plotting functions for creating grand average and
conditional average plots. See the vignette for samples of the functionality.
Currently, the functions in this package are designed for handling data
collected with SR Research Eyelink eye trackers using Sample Reports created
in SR Research Data Viewer. While we would like to add functionality
for data collected with other systems in the future, the current package is
considered to be feature-complete; further updates will mainly entail maintenance
and the addition of minor functionality.
Author: Vincent Porretta [aut, cre],
Aki-Juhani Kyröläinen [aut],
Jacolien van Rij [ctb],
Juhani Järvikivi [ctb]
Maintainer: Vincent Porretta <vincentporretta@gmail.com>
Diff between VWPre versions 1.2.3 dated 2020-03-10 and 1.2.4 dated 2020-11-29
DESCRIPTION | 10 - MD5 | 46 ++-- R/calculations.R | 3 build/vignette.rds |binary inst/NEWS | 30 +++ inst/doc/VWPre_Basic_Preprocessing.R | 70 +++---- inst/doc/VWPre_Basic_Preprocessing.html | 98 +++++----- inst/doc/VWPre_Interest_Areas.R | 30 +-- inst/doc/VWPre_Interest_Areas.html | 86 +++++---- inst/doc/VWPre_Message_Alignment.R | 22 +- inst/doc/VWPre_Message_Alignment.html | 44 ++-- inst/doc/VWPre_Plotting.R | 36 +-- inst/doc/VWPre_Plotting.Rmd | 4 inst/doc/VWPre_Plotting.html | 296 ++++++++++++++++---------------- man/VWPre.Rd | 1 man/create_binomial.Rd | 9 man/fasttrack.Rd | 22 +- man/plot_avg.Rd | 22 +- man/plot_avg_cdiff.Rd | 19 +- man/plot_avg_contour.Rd | 14 + man/plot_avg_diff.Rd | 22 +- man/prep_data.Rd | 8 man/transform_to_elogit.Rd | 9 vignettes/VWPre_Plotting.Rmd | 4 24 files changed, 522 insertions(+), 383 deletions(-)
Title: Learn Text 'Embeddings' with 'Starspace'
Description: Wraps the 'StarSpace' library <https://github.com/facebookresearch/StarSpace>
allowing users to calculate word, sentence, article, document, webpage, link and entity 'embeddings'.
By using the 'embeddings', you can perform text based multi-label classification,
find similarities between texts and categories, do collaborative-filtering based recommendation
as well as content-based recommendation, find out relations between entities, calculate
graph 'embeddings' as well as perform semi-supervised learning and multi-task learning on plain text.
The techniques are explained in detail in the paper: 'StarSpace: Embed All The Things!' by Wu et al. (2017), available at <arXiv:1709.03856>.
Author: Jan Wijffels [aut, cre, cph] (R wrapper),
BNOSAC [cph] (R wrapper),
Facebook, Inc. [cph] (Starspace (BSD licensed))
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between ruimtehol versions 0.2.5 dated 2020-10-10 and 0.3 dated 2020-11-29
DESCRIPTION | 6 MD5 | 50 +++---- NEWS.md | 6 R/RcppExports.R | 8 - R/embed-all-the-things.R | 51 +++++-- R/r-all-the-things.R | 203 +++++++++++++++--------------- inst/doc/ground-control-to-ruimtehol.R | 6 inst/doc/ground-control-to-ruimtehol.Rnw | 8 - inst/doc/ground-control-to-ruimtehol.pdf |binary man/embed_articlespace.Rd | 15 +- man/embed_docspace.Rd | 19 ++ man/embed_entityrelationspace.Rd | 9 - man/embed_pagespace.Rd | 16 +- man/embed_sentencespace.Rd | 19 +- man/embed_tagspace.Rd | 25 ++- man/embed_wordspace.Rd | 14 +- man/predict.textspace.Rd | 2 man/starspace.Rd | 4 man/starspace_dictionary.Rd | 2 man/starspace_embedding.Rd | 2 man/starspace_load_model.Rd | 11 + man/starspace_save_model.Rd | 2 src/RcppExports.cpp | 22 ++- src/Starspace/src/model.cpp | 2 src/rcpp_textspace.cpp | 86 ++++++++++-- vignettes/ground-control-to-ruimtehol.Rnw | 8 - 26 files changed, 384 insertions(+), 212 deletions(-)
Title: Fast Creation of Dummy (Binary) Columns and Rows from
Categorical Variables
Description: Creates dummy columns from columns that have categorical variables (character or factor types). You can also specify which columns to make dummies out of, or which columns to ignore. Also creates dummy rows from character, factor, and Date columns. This package provides a significant speed increase from creating dummy variables through model.matrix().
Author: Jacob Kaplan [aut, cre] (<https://orcid.org/0000-0002-0601-0387>),
Benjamin Schlegel [ctb]
Maintainer: Jacob Kaplan <jkkaplan6@gmail.com>
Diff between fastDummies versions 1.6.2 dated 2020-09-16 and 1.6.3 dated 2020-11-29
DESCRIPTION | 9 ++- MD5 | 16 +++--- NEWS.md | 8 +++ R/dummy_cols.R | 49 ++++++++++++++++--- inst/doc/making-dummy-rows.html | 75 +++++++++++++++++++++++++++++- inst/doc/making-dummy-variables.html | 75 +++++++++++++++++++++++++++++- tests/testthat/test-columns-type.R | 4 + tests/testthat/test-columns-value-order.R | 10 ++++ tests/testthat/test-columns.R | 16 ++++++ 9 files changed, 238 insertions(+), 24 deletions(-)
Title: Implement a Countdown in 'RMarkdown' Documents and 'shiny'
Applications
Description: Allows the user to create a countdown in 'RMarkdown' documents and 'shiny' applications.
The package is a wrapper of the 'JavaScript' library 'flipdown.js'. See <https://pbutcher.uk/flipdown/> for more info.
Author: Mohamed El Fodil Ihaddaden [aut, cre],
Butcher Peter [ctb, cph] (flipdown.js library developer)
Maintainer: Mohamed El Fodil Ihaddaden <ihaddaden.fodeil@gmail.com>
Diff between flipdownr versions 0.1.0 dated 2020-10-24 and 0.1.1 dated 2020-11-29
flipdownr-0.1.0/flipdownr/man/figures/README-pressure-1.png |only flipdownr-0.1.1/flipdownr/DESCRIPTION | 8 - flipdownr-0.1.1/flipdownr/MD5 | 16 +- flipdownr-0.1.1/flipdownr/R/flipdown.R | 17 +- flipdownr-0.1.1/flipdownr/README.md | 90 +++++++++--- flipdownr-0.1.1/flipdownr/inst/flipdown/flipdown.min.css | 2 flipdownr-0.1.1/flipdownr/man/figures/gdila.gif |only flipdownr-0.1.1/flipdownr/man/figures/hex.png |only flipdownr-0.1.1/flipdownr/man/figures/ifri.gif |only flipdownr-0.1.1/flipdownr/man/figures/saida.gif |only flipdownr-0.1.1/flipdownr/man/figures/youkous.gif |only flipdownr-0.1.1/flipdownr/man/flipdown.Rd | 2 12 files changed, 100 insertions(+), 35 deletions(-)
Title: Regression Modeling Strategies
Description: Regression modeling, testing, estimation, validation,
graphics, prediction, and typesetting by storing enhanced model design
attributes in the fit. 'rms' is a collection of functions that
assist with and streamline modeling. It also contains functions for
binary and ordinal logistic regression models, ordinal models for
continuous Y with a variety of distribution families, and the Buckley-James
multiple regression model for right-censored responses, and implements
penalized maximum likelihood estimation for logistic and ordinary
linear models. 'rms' works with almost any regression model, but it
was especially written to work with binary or ordinal regression
models, Cox regression, accelerated failure time models,
ordinary linear models, the Buckley-James model, generalized least
squares for serially or spatially correlated observations, generalized
linear models, and quantile regression.
Author: Frank E Harrell Jr <fh@fharrell.com>
Maintainer: Frank E Harrell Jr <fh@fharrell.com>
Diff between rms versions 6.0-1 dated 2020-07-18 and 6.1-0 dated 2020-11-29
rms-6.0-1/rms/R/stackMI.r |only rms-6.0-1/rms/man/stackMI.Rd |only rms-6.1-0/rms/DESCRIPTION | 11 - rms-6.1-0/rms/MD5 | 160 ++++++++++----------- rms-6.1-0/rms/NAMESPACE | 6 rms-6.1-0/rms/NEWS | 13 + rms-6.1-0/rms/R/Predict.s | 118 +++++---------- rms-6.1-0/rms/R/contrast.s | 72 +++------ rms-6.1-0/rms/R/cph.s | 1 rms-6.1-0/rms/R/lrm.fit.bare.r |only rms-6.1-0/rms/R/nomogram.s | 3 rms-6.1-0/rms/R/orm.s | 232 +++++++++++++++++++++---------- rms-6.1-0/rms/R/poma.r |only rms-6.1-0/rms/R/predict.lrm.s | 85 +++++++---- rms-6.1-0/rms/R/predictrms.s | 6 rms-6.1-0/rms/R/rms.s | 22 ++ rms-6.1-0/rms/R/rms.trans.s | 1 rms-6.1-0/rms/R/rmsMisc.s | 8 - rms-6.1-0/rms/R/summary.rms.s | 33 ++-- rms-6.1-0/rms/README.md | 8 - rms-6.1-0/rms/inst/tests/modelData.r | 11 + rms-6.1-0/rms/inst/tests/orm-Mean.r | 6 rms-6.1-0/rms/inst/tests/orm-profile.r | 13 + rms-6.1-0/rms/inst/tests/orm.s | 5 rms-6.1-0/rms/man/ExProb.Rd | 9 + rms-6.1-0/rms/man/Function.Rd | 2 rms-6.1-0/rms/man/Gls.Rd | 2 rms-6.1-0/rms/man/Predict.Rd | 22 ++ rms-6.1-0/rms/man/anova.rms.Rd | 2 rms-6.1-0/rms/man/bj.Rd | 2 rms-6.1-0/rms/man/bootcov.Rd | 4 rms-6.1-0/rms/man/bplot.Rd | 4 rms-6.1-0/rms/man/calibrate.Rd | 2 rms-6.1-0/rms/man/contrast.Rd | 14 - rms-6.1-0/rms/man/cph.Rd | 2 rms-6.1-0/rms/man/cr.setup.Rd | 2 rms-6.1-0/rms/man/datadist.Rd | 2 rms-6.1-0/rms/man/fastbw.Rd | 2 rms-6.1-0/rms/man/gIndex.Rd | 2 rms-6.1-0/rms/man/gendata.Rd | 2 rms-6.1-0/rms/man/ggplot.Predict.Rd | 2 rms-6.1-0/rms/man/hazard.ratio.plot.Rd | 2 rms-6.1-0/rms/man/ie.setup.Rd | 2 rms-6.1-0/rms/man/latex.cph.Rd | 2 rms-6.1-0/rms/man/latexrms.Rd | 2 rms-6.1-0/rms/man/lrm.Rd | 2 rms-6.1-0/rms/man/lrm.fit.Rd | 2 rms-6.1-0/rms/man/lrm.fit.bare.Rd |only rms-6.1-0/rms/man/nomogram.Rd | 4 rms-6.1-0/rms/man/ols.Rd | 2 rms-6.1-0/rms/man/orm.Rd | 21 ++ rms-6.1-0/rms/man/orm.fit.Rd | 2 rms-6.1-0/rms/man/pentrace.Rd | 2 rms-6.1-0/rms/man/plot.Predict.Rd | 2 rms-6.1-0/rms/man/plot.xmean.ordinaly.Rd | 2 rms-6.1-0/rms/man/plotp.Predict.Rd | 2 rms-6.1-0/rms/man/poma.Rd |only rms-6.1-0/rms/man/pphsm.Rd | 2 rms-6.1-0/rms/man/predab.resample.Rd | 2 rms-6.1-0/rms/man/predict.lrm.Rd | 13 + rms-6.1-0/rms/man/predictrms.Rd | 2 rms-6.1-0/rms/man/psm.Rd | 2 rms-6.1-0/rms/man/residuals.lrm.Rd | 2 rms-6.1-0/rms/man/residuals.ols.Rd | 2 rms-6.1-0/rms/man/rms.Rd | 2 rms-6.1-0/rms/man/rms.trans.Rd | 2 rms-6.1-0/rms/man/rmsMisc.Rd | 4 rms-6.1-0/rms/man/robcov.Rd | 2 rms-6.1-0/rms/man/sensuc.Rd | 2 rms-6.1-0/rms/man/specs.rms.Rd | 2 rms-6.1-0/rms/man/summary.rms.Rd | 7 rms-6.1-0/rms/man/survest.cph.Rd | 2 rms-6.1-0/rms/man/survest.psm.Rd | 2 rms-6.1-0/rms/man/val.prob.Rd | 2 rms-6.1-0/rms/man/val.surv.Rd | 2 rms-6.1-0/rms/man/validate.Rd | 2 rms-6.1-0/rms/man/validate.Rq.Rd | 2 rms-6.1-0/rms/man/validate.cph.Rd | 2 rms-6.1-0/rms/man/validate.lrm.Rd | 2 rms-6.1-0/rms/man/validate.ols.Rd | 2 rms-6.1-0/rms/man/validate.rpart.Rd | 2 rms-6.1-0/rms/man/vif.Rd | 2 rms-6.1-0/rms/man/which.influence.Rd | 2 rms-6.1-0/rms/man/zzzrmsOverview.Rd | 8 - 84 files changed, 599 insertions(+), 419 deletions(-)
Title: Text Mining Distributed Corpus Plug-in
Description: A plug-in for the text mining framework tm to support text mining
in a distributed way. The package provides a convenient interface for
handling distributed corpus objects based on distributed list objects.
Author: Ingo Feinerer [aut],
Stefan Theussl [aut, cre]
Maintainer: Stefan Theussl <Stefan.Theussl@R-project.org>
Diff between tm.plugin.dc versions 0.2-8 dated 2015-09-10 and 0.2-10 dated 2020-11-29
DESCRIPTION | 12 +++++----- MD5 | 8 +++---- R/corpus.R | 19 +++++++++------- R/reducer.R | 66 ++++++++++++++++++++++++++++++++++++++++++---------------- inst/CITATION | 6 ++--- 5 files changed, 72 insertions(+), 39 deletions(-)
Title: Functions for Common Chart Types
Description: Wrapper for the 'ggplot2' package that creates a variety of common
charts (e.g. bar, line, area, ROC, waterfall, pie) while aiming to reduce
typing.
Author: Wojtek Kostelecki
Maintainer: Wojtek Kostelecki <wojtek.kostelecki@gmail.com>
Diff between ezplot versions 0.6.5 dated 2020-11-14 and 0.6.6 dated 2020-11-29
DESCRIPTION | 6 ++--- MD5 | 17 +++++++------- NEWS.md | 3 ++ R/ks_plot.R | 8 +++---- R/performance.R | 48 +++++++++++++++++++++++++++++++++++------- R/performance_plot.R | 2 - README.md | 7 +++--- inst/doc/basics.html | 4 +-- man/perf_df.Rd | 7 +++++- tests/testthat/test-perf_df.R |only 10 files changed, 72 insertions(+), 30 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-28 0.99-20200527
2020-04-01 0.99-20200213.1
2020-02-14 0.99-20200213
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-18 3.0.2
2020-07-10 3.0.0
2020-07-10 3.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-23 5.0
2018-11-09 4.0
2018-04-12 3.5
2017-09-02 3.0
2017-06-30 2.2
2017-04-23 2.0
2016-07-05 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-07-05 1.0.0
2019-12-19 0.9.2
2019-01-15 0.9.1
2018-12-03 0.9.0
Title: Easily Extract Data from 'StatsWales'
Description: Download data from 'StatsWales' into R. Removes the need for the user to
write their own loops when parsing data from the 'StatsWales' API. Provides functions
for datasets (<http://open.statswales.gov.wales/en-gb/dataset>) and metadata
(<http://open.statswales.gov.wales/en-gb/discover/metadata>) endpoints.
Author: Jamie Ralph [aut, cre]
Maintainer: Jamie Ralph <jamesryanralph@outlook.com>
Diff between statswalesr versions 0.1.0 dated 2020-11-26 and 0.1.1 dated 2020-11-29
DESCRIPTION | 8 ++--- MD5 | 14 ++++----- R/statswales_get_dataset.R | 59 +++++++++++++++++++++++++++++++++-------- R/statswales_get_metadata.R | 32 +++++++++++++++++----- R/statswales_search.R | 30 ++++++++++++++++++-- README.md | 37 ++++++++++++++++++------- man/statswales_get_dataset.Rd | 2 + tests/testthat/test-get-data.R | 4 +- 8 files changed, 140 insertions(+), 46 deletions(-)
Title: Exact Sequential Analysis for Poisson and Binomial Data
Description: Functions to calculate exact critical values, statistical power, expected time to signal, and required sample sizes for performing exact sequential analysis. All these calculations can be done for either Poisson or binomial data, for continuous or group sequential analyses, and for different types of rejection boundaries. In case of group sequential analyses, the group sizes do not have to be specified in advance and the alpha spending can be arbitrarily settled.
Author: Ivair Ramos Silva and Martin Kulldorff
Maintainer: Ivair Ramos Silva <jamesivair@yahoo.com.br>
Diff between Sequential versions 3.1 dated 2019-09-28 and 3.2 dated 2020-11-29
DESCRIPTION | 8 +- MD5 | 22 +++---- R/Analyze.Poisson.R | 99 ++++++++++++++++++++++++++------- R/CV.Poisson.R | 3 - R/Optimal.Binomial.R | 60 ++++++++++++++------ R/Performance.AlphaSpend.Binomial.R | 24 +++----- man/Analyze.CondPoisson.Rd | 17 +++-- man/Analyze.wBinomial.Rd | 2 man/AnalyzeSetUp.wBinomial.Rd | 4 - man/Optimal.Binomial.Rd | 8 ++ man/Performance.AlphaSpend.Binomial.Rd | 9 ++- man/Sequential-package.Rd | 12 +++- 12 files changed, 181 insertions(+), 87 deletions(-)
Title: Functional Time Series Analysis
Description: Functions for visualizing, modeling, forecasting and hypothesis testing of functional time series.
Author: Rob Hyndman [aut] (<https://orcid.org/0000-0002-2140-5352>),
Han Lin Shang [aut, cre, cph] (<https://orcid.org/0000-0003-1769-6430>)
Maintainer: Han Lin Shang <hanlin.shang@mq.edu.au>
Diff between ftsa versions 5.9 dated 2020-09-25 and 6.0 dated 2020-11-29
ChangeLog | 5 DESCRIPTION | 8 MD5 | 11 - R/T_stationary.R | 390 ++++++++++++++++++++++++-------------------- R/gamma_matrix.R |only man/T_stationary.Rd | 7 man/pcscorebootstrapdata.Rd | 20 +- 7 files changed, 244 insertions(+), 197 deletions(-)
Title: Comprehensive Luminescence Dating Data Analysis
Description: A collection of various R functions for the purpose of Luminescence
dating data analysis. This includes, amongst others, data import, export,
application of age models, curve deconvolution, sequence analysis and
plotting of equivalent dose distributions.
Author: Sebastian Kreutzer [aut, trl, cre, dtc]
(<https://orcid.org/0000-0002-0734-2199>),
Christoph Burow [aut, trl, dtc]
(<https://orcid.org/0000-0002-5023-4046>),
Michael Dietze [aut] (<https://orcid.org/0000-0001-6063-1726>),
Margret C. Fuchs [aut],
Christoph Schmidt [aut] (<https://orcid.org/0000-0002-2309-3209>),
Manfred Fischer [aut, trl],
Johannes Friedrich [aut] (<https://orcid.org/0000-0002-0805-9547>),
Norbert Mercier [ctb] (<https://orcid.org/0000-0002-6375-9108>),
Rachel K. Smedley [ctb] (<https://orcid.org/0000-0001-7773-5193>),
Claire Christophe [ctb],
Antoine Zink [ctb] (<https://orcid.org/0000-0001-7146-1101>),
Julie Durcan [ctb] (<https://orcid.org/0000-0001-8724-8022>),
Georgina E. King [ctb, dtc] (<https://orcid.org/0000-0003-1059-8192>),
Anne Philippe [ctb],
Guillaume Guerin [ctb] (<https://orcid.org/0000-0001-6298-5579>),
Svenja Riedesel [aut] (<https://orcid.org/0000-0003-2936-8776>),
Martin Autzen [aut] (<https://orcid.org/0000-0001-6249-426X>),
Pierre Guibert [ctb] (<https://orcid.org/0000-0001-8969-8684>),
Dirk Mittelstrass [aut],
Markus Fuchs [ths]
Maintainer: Sebastian Kreutzer <sebastian.kreutzer@aber.ac.uk>
Diff between Luminescence versions 0.9.8 dated 2020-11-16 and 0.9.9 dated 2020-11-29
Luminescence-0.9.8/Luminescence/tests/testthat/test_convert_X2CSV.R |only Luminescence-0.9.9/Luminescence/DESCRIPTION | 34 Luminescence-0.9.9/Luminescence/MD5 | 497 ++++---- Luminescence-0.9.9/Luminescence/NAMESPACE | 1 Luminescence-0.9.9/Luminescence/NEWS.md | 90 + Luminescence-0.9.9/Luminescence/R/Luminescence-package.R | 4 Luminescence-0.9.9/Luminescence/R/RLum.Data.Spectrum-class.R | 2 Luminescence-0.9.9/Luminescence/R/RLum.Results-class.R | 2 Luminescence-0.9.9/Luminescence/R/addins_RLum.R | 4 Luminescence-0.9.9/Luminescence/R/analyse_Al2O3C_CrossTalk.R | 8 Luminescence-0.9.9/Luminescence/R/analyse_Al2O3C_ITC.R | 2 Luminescence-0.9.9/Luminescence/R/analyse_Al2O3C_Measurement.R | 2 Luminescence-0.9.9/Luminescence/R/analyse_SAR.CWOSL.R | 595 +++------- Luminescence-0.9.9/Luminescence/R/analyse_SAR.TL.R | 16 Luminescence-0.9.9/Luminescence/R/apply_CosmicRayRemoval.R | 5 Luminescence-0.9.9/Luminescence/R/calc_AliquotSize.R | 2 Luminescence-0.9.9/Luminescence/R/calc_FuchsLang2001.R | 96 - Luminescence-0.9.9/Luminescence/R/calc_OSLLxTxDecomposed.R |only Luminescence-0.9.9/Luminescence/R/calc_OSLLxTxRatio.R | 141 +- Luminescence-0.9.9/Luminescence/R/fit_OSLLifeTimes.R | 2 Luminescence-0.9.9/Luminescence/R/fit_SurfaceExposure.R | 2 Luminescence-0.9.9/Luminescence/R/fit_ThermalQuenching.R | 14 Luminescence-0.9.9/Luminescence/R/internals_RLum.R | 193 +++ Luminescence-0.9.9/Luminescence/R/plot_GrowthCurve.R | 77 - Luminescence-0.9.9/Luminescence/R/plot_RLum.Analysis.R | 6 Luminescence-0.9.9/Luminescence/R/plot_RLum.R | 49 Luminescence-0.9.9/Luminescence/R/plot_ROI.R | 1 Luminescence-0.9.9/Luminescence/R/read_BIN2R.R | 2 Luminescence-0.9.9/Luminescence/R/read_Daybreak2R.R | 29 Luminescence-0.9.9/Luminescence/R/read_PSL2R.R | 186 +-- Luminescence-0.9.9/Luminescence/R/read_SPE2R.R | 2 Luminescence-0.9.9/Luminescence/R/verify_SingleGrainData.R | 2 Luminescence-0.9.9/Luminescence/R/zzz.R | 26 Luminescence-0.9.9/Luminescence/README.md | 2 Luminescence-0.9.9/Luminescence/build/partial.rdb |binary Luminescence-0.9.9/Luminescence/inst/CITATION | 3 Luminescence-0.9.9/Luminescence/inst/WORDLIST | 5 Luminescence-0.9.9/Luminescence/man/Analyse_SAR.OSLdata.Rd | 2 Luminescence-0.9.9/Luminescence/man/CW2pHMi.Rd | 2 Luminescence-0.9.9/Luminescence/man/CW2pLM.Rd | 2 Luminescence-0.9.9/Luminescence/man/CW2pLMi.Rd | 2 Luminescence-0.9.9/Luminescence/man/CW2pPMi.Rd | 2 Luminescence-0.9.9/Luminescence/man/ExampleData.Al2O3C.Rd | 2 Luminescence-0.9.9/Luminescence/man/GitHub-API.Rd | 2 Luminescence-0.9.9/Luminescence/man/Luminescence-package.Rd | 2 Luminescence-0.9.9/Luminescence/man/PSL2Risoe.BINfileData.Rd | 2 Luminescence-0.9.9/Luminescence/man/RLum-class.Rd | 2 Luminescence-0.9.9/Luminescence/man/RLum.Analysis-class.Rd | 2 Luminescence-0.9.9/Luminescence/man/RLum.Data.Curve-class.Rd | 2 Luminescence-0.9.9/Luminescence/man/RLum.Data.Image-class.Rd | 2 Luminescence-0.9.9/Luminescence/man/RLum.Data.Spectrum-class.Rd | 4 Luminescence-0.9.9/Luminescence/man/RLum.Results-class.Rd | 2 Luminescence-0.9.9/Luminescence/man/Risoe.BINfileData-class.Rd | 2 Luminescence-0.9.9/Luminescence/man/Risoe.BINfileData2RLum.Analysis.Rd | 2 Luminescence-0.9.9/Luminescence/man/Second2Gray.Rd | 2 Luminescence-0.9.9/Luminescence/man/analyse_Al2O3C_CrossTalk.Rd | 4 Luminescence-0.9.9/Luminescence/man/analyse_Al2O3C_ITC.Rd | 4 Luminescence-0.9.9/Luminescence/man/analyse_Al2O3C_Measurement.Rd | 4 Luminescence-0.9.9/Luminescence/man/analyse_FadingMeasurement.Rd | 2 Luminescence-0.9.9/Luminescence/man/analyse_IRSAR.RF.Rd | 2 Luminescence-0.9.9/Luminescence/man/analyse_SAR.CWOSL.Rd | 51 Luminescence-0.9.9/Luminescence/man/analyse_SAR.TL.Rd | 12 Luminescence-0.9.9/Luminescence/man/analyse_baSAR.Rd | 2 Luminescence-0.9.9/Luminescence/man/analyse_pIRIRSequence.Rd | 2 Luminescence-0.9.9/Luminescence/man/analyse_portableOSL.Rd | 2 Luminescence-0.9.9/Luminescence/man/app_RLum.Rd | 2 Luminescence-0.9.9/Luminescence/man/apply_CosmicRayRemoval.Rd | 7 Luminescence-0.9.9/Luminescence/man/apply_EfficiencyCorrection.Rd | 2 Luminescence-0.9.9/Luminescence/man/bin_RLum.Data.Rd | 2 Luminescence-0.9.9/Luminescence/man/calc_AliquotSize.Rd | 4 Luminescence-0.9.9/Luminescence/man/calc_AverageDose.Rd | 2 Luminescence-0.9.9/Luminescence/man/calc_CentralDose.Rd | 2 Luminescence-0.9.9/Luminescence/man/calc_CobbleDoseRate.Rd | 2 Luminescence-0.9.9/Luminescence/man/calc_CommonDose.Rd | 2 Luminescence-0.9.9/Luminescence/man/calc_CosmicDoseRate.Rd | 2 Luminescence-0.9.9/Luminescence/man/calc_FadingCorr.Rd | 2 Luminescence-0.9.9/Luminescence/man/calc_FastRatio.Rd | 2 Luminescence-0.9.9/Luminescence/man/calc_FiniteMixture.Rd | 2 Luminescence-0.9.9/Luminescence/man/calc_FuchsLang2001.Rd | 6 Luminescence-0.9.9/Luminescence/man/calc_HomogeneityTest.Rd | 2 Luminescence-0.9.9/Luminescence/man/calc_Huntley2006.Rd | 2 Luminescence-0.9.9/Luminescence/man/calc_IEU.Rd | 2 Luminescence-0.9.9/Luminescence/man/calc_Kars2008.Rd | 2 Luminescence-0.9.9/Luminescence/man/calc_Lamothe2003.Rd | 2 Luminescence-0.9.9/Luminescence/man/calc_MaxDose.Rd | 2 Luminescence-0.9.9/Luminescence/man/calc_MinDose.Rd | 2 Luminescence-0.9.9/Luminescence/man/calc_OSLLxTxDecomposed.Rd |only Luminescence-0.9.9/Luminescence/man/calc_OSLLxTxRatio.Rd | 39 Luminescence-0.9.9/Luminescence/man/calc_SourceDoseRate.Rd | 2 Luminescence-0.9.9/Luminescence/man/calc_Statistics.Rd | 2 Luminescence-0.9.9/Luminescence/man/calc_TLLxTxRatio.Rd | 2 Luminescence-0.9.9/Luminescence/man/calc_ThermalLifetime.Rd | 2 Luminescence-0.9.9/Luminescence/man/calc_WodaFuchs2008.Rd | 2 Luminescence-0.9.9/Luminescence/man/calc_gSGC.Rd | 2 Luminescence-0.9.9/Luminescence/man/convert_Activity2Concentration.Rd | 2 Luminescence-0.9.9/Luminescence/man/convert_BIN2CSV.Rd | 2 Luminescence-0.9.9/Luminescence/man/convert_Concentration2DoseRate.Rd | 2 Luminescence-0.9.9/Luminescence/man/convert_Daybreak2CSV.Rd | 2 Luminescence-0.9.9/Luminescence/man/convert_PSL2CSV.Rd | 2 Luminescence-0.9.9/Luminescence/man/convert_RLum2Risoe.BINfileData.Rd | 2 Luminescence-0.9.9/Luminescence/man/convert_Wavelength2Energy.Rd | 2 Luminescence-0.9.9/Luminescence/man/convert_XSYG2CSV.Rd | 2 Luminescence-0.9.9/Luminescence/man/extract_IrradiationTimes.Rd | 2 Luminescence-0.9.9/Luminescence/man/fit_CWCurve.Rd | 2 Luminescence-0.9.9/Luminescence/man/fit_LMCurve.Rd | 2 Luminescence-0.9.9/Luminescence/man/fit_OSLLifeTimes.Rd | 2 Luminescence-0.9.9/Luminescence/man/fit_SurfaceExposure.Rd | 4 Luminescence-0.9.9/Luminescence/man/fit_ThermalQuenching.Rd | 16 Luminescence-0.9.9/Luminescence/man/get_Layout.Rd | 2 Luminescence-0.9.9/Luminescence/man/get_Quote.Rd | 2 Luminescence-0.9.9/Luminescence/man/get_RLum.Rd | 2 Luminescence-0.9.9/Luminescence/man/get_Risoe.BINfileData.Rd | 2 Luminescence-0.9.9/Luminescence/man/get_rightAnswer.Rd | 2 Luminescence-0.9.9/Luminescence/man/length_RLum.Rd | 2 Luminescence-0.9.9/Luminescence/man/merge_RLum.Analysis.Rd | 2 Luminescence-0.9.9/Luminescence/man/merge_RLum.Data.Curve.Rd | 2 Luminescence-0.9.9/Luminescence/man/merge_RLum.Rd | 2 Luminescence-0.9.9/Luminescence/man/merge_RLum.Results.Rd | 2 Luminescence-0.9.9/Luminescence/man/merge_Risoe.BINfileData.Rd | 2 Luminescence-0.9.9/Luminescence/man/names_RLum.Rd | 2 Luminescence-0.9.9/Luminescence/man/plot_AbanicoPlot.Rd | 2 Luminescence-0.9.9/Luminescence/man/plot_DRCSummary.Rd | 2 Luminescence-0.9.9/Luminescence/man/plot_DRTResults.Rd | 2 Luminescence-0.9.9/Luminescence/man/plot_DetPlot.Rd | 2 Luminescence-0.9.9/Luminescence/man/plot_FilterCombinations.Rd | 2 Luminescence-0.9.9/Luminescence/man/plot_GrowthCurve.Rd | 42 Luminescence-0.9.9/Luminescence/man/plot_Histogram.Rd | 2 Luminescence-0.9.9/Luminescence/man/plot_KDE.Rd | 2 Luminescence-0.9.9/Luminescence/man/plot_NRt.Rd | 2 Luminescence-0.9.9/Luminescence/man/plot_RLum.Analysis.Rd | 8 Luminescence-0.9.9/Luminescence/man/plot_RLum.Data.Curve.Rd | 2 Luminescence-0.9.9/Luminescence/man/plot_RLum.Data.Image.Rd | 2 Luminescence-0.9.9/Luminescence/man/plot_RLum.Data.Spectrum.Rd | 2 Luminescence-0.9.9/Luminescence/man/plot_RLum.Rd | 9 Luminescence-0.9.9/Luminescence/man/plot_RLum.Results.Rd | 2 Luminescence-0.9.9/Luminescence/man/plot_ROI.Rd | 2 Luminescence-0.9.9/Luminescence/man/plot_RadialPlot.Rd | 2 Luminescence-0.9.9/Luminescence/man/plot_Risoe.BINfileData.Rd | 2 Luminescence-0.9.9/Luminescence/man/plot_ViolinPlot.Rd | 2 Luminescence-0.9.9/Luminescence/man/read_BIN2R.Rd | 4 Luminescence-0.9.9/Luminescence/man/read_Daybreak2R.Rd | 8 Luminescence-0.9.9/Luminescence/man/read_PSL2R.Rd | 4 Luminescence-0.9.9/Luminescence/man/read_RF2R.Rd | 2 Luminescence-0.9.9/Luminescence/man/read_SPE2R.Rd | 4 Luminescence-0.9.9/Luminescence/man/read_XSYG2R.Rd | 2 Luminescence-0.9.9/Luminescence/man/replicate_RLum.Rd | 2 Luminescence-0.9.9/Luminescence/man/report_RLum.Rd | 2 Luminescence-0.9.9/Luminescence/man/sTeve.Rd | 2 Luminescence-0.9.9/Luminescence/man/scale_GammaDose.Rd | 2 Luminescence-0.9.9/Luminescence/man/set_RLum.Rd | 2 Luminescence-0.9.9/Luminescence/man/set_Risoe.BINfileData.Rd | 2 Luminescence-0.9.9/Luminescence/man/smooth_RLum.Rd | 2 Luminescence-0.9.9/Luminescence/man/structure_RLum.Rd | 2 Luminescence-0.9.9/Luminescence/man/template_DRAC.Rd | 2 Luminescence-0.9.9/Luminescence/man/tune_Data.Rd | 2 Luminescence-0.9.9/Luminescence/man/use_DRAC.Rd | 2 Luminescence-0.9.9/Luminescence/man/verify_SingleGrainData.Rd | 4 Luminescence-0.9.9/Luminescence/man/write_R2BIN.Rd | 2 Luminescence-0.9.9/Luminescence/man/write_RLum2CSV.Rd | 2 Luminescence-0.9.9/Luminescence/tests/testthat/test_Analyse_SAROSLdata.R | 40 Luminescence-0.9.9/Luminescence/tests/testthat/test_CW2pX.R | 27 Luminescence-0.9.9/Luminescence/tests/testthat/test_PSL2RisoeBINfiledata.R | 6 Luminescence-0.9.9/Luminescence/tests/testthat/test_RLum.Analysis-class.R | 48 Luminescence-0.9.9/Luminescence/tests/testthat/test_RLum.Data.Curve.R | 3 Luminescence-0.9.9/Luminescence/tests/testthat/test_RLum.Data.Image.R | 15 Luminescence-0.9.9/Luminescence/tests/testthat/test_RLum.Data.Spectrum.R | 7 Luminescence-0.9.9/Luminescence/tests/testthat/test_RLum.R | 5 Luminescence-0.9.9/Luminescence/tests/testthat/test_RisoeBINfileData-class.R | 6 Luminescence-0.9.9/Luminescence/tests/testthat/test_Second2Gray.R | 7 Luminescence-0.9.9/Luminescence/tests/testthat/test_analyse_Al2O3C_CrossTalk.R | 6 Luminescence-0.9.9/Luminescence/tests/testthat/test_analyse_Al2O3C_ITC.R | 8 Luminescence-0.9.9/Luminescence/tests/testthat/test_analyse_Al2O3C_Measurement.R | 14 Luminescence-0.9.9/Luminescence/tests/testthat/test_analyse_FadingMeasurement.R | 9 Luminescence-0.9.9/Luminescence/tests/testthat/test_analyse_IRSARRF.R | 19 Luminescence-0.9.9/Luminescence/tests/testthat/test_analyse_SARCWOSL.R | 312 +++-- Luminescence-0.9.9/Luminescence/tests/testthat/test_analyse_SARTL.R | 5 Luminescence-0.9.9/Luminescence/tests/testthat/test_analyse_baSAR.R | 25 Luminescence-0.9.9/Luminescence/tests/testthat/test_analyse_pIRIRSequence.R | 11 Luminescence-0.9.9/Luminescence/tests/testthat/test_analyse_portableOSL.R | 12 Luminescence-0.9.9/Luminescence/tests/testthat/test_app_RLum.R | 3 Luminescence-0.9.9/Luminescence/tests/testthat/test_apply_CosmicRayRemoval.R | 20 Luminescence-0.9.9/Luminescence/tests/testthat/test_apply_EfficiencyCorrection.R | 11 Luminescence-0.9.9/Luminescence/tests/testthat/test_as_latex_table.R | 4 Luminescence-0.9.9/Luminescence/tests/testthat/test_bin_RLumData.R | 7 Luminescence-0.9.9/Luminescence/tests/testthat/test_calc_AliquotSize.R | 28 Luminescence-0.9.9/Luminescence/tests/testthat/test_calc_AverageDose.R | 8 Luminescence-0.9.9/Luminescence/tests/testthat/test_calc_CentralDose.R | 8 Luminescence-0.9.9/Luminescence/tests/testthat/test_calc_CobbeDoseRate.R | 3 Luminescence-0.9.9/Luminescence/tests/testthat/test_calc_CommonDose.R | 8 Luminescence-0.9.9/Luminescence/tests/testthat/test_calc_CosmicDoseRate.R | 8 Luminescence-0.9.9/Luminescence/tests/testthat/test_calc_FadingCorr.R | 13 Luminescence-0.9.9/Luminescence/tests/testthat/test_calc_FastRatio.R | 7 Luminescence-0.9.9/Luminescence/tests/testthat/test_calc_FiniteMixture.R | 8 Luminescence-0.9.9/Luminescence/tests/testthat/test_calc_FuchsLang2001.R | 11 Luminescence-0.9.9/Luminescence/tests/testthat/test_calc_HomogeneityTest.R | 7 Luminescence-0.9.9/Luminescence/tests/testthat/test_calc_Huntley2008.R | 22 Luminescence-0.9.9/Luminescence/tests/testthat/test_calc_IEU.R | 9 Luminescence-0.9.9/Luminescence/tests/testthat/test_calc_Lamothe2003.R | 58 Luminescence-0.9.9/Luminescence/tests/testthat/test_calc_MaxDose.R | 7 Luminescence-0.9.9/Luminescence/tests/testthat/test_calc_MinDose.R | 7 Luminescence-0.9.9/Luminescence/tests/testthat/test_calc_OSLLxTxRatio.R | 45 Luminescence-0.9.9/Luminescence/tests/testthat/test_calc_SourceDoseRate.R | 8 Luminescence-0.9.9/Luminescence/tests/testthat/test_calc_Statistics.R | 9 Luminescence-0.9.9/Luminescence/tests/testthat/test_calc_TLLxTxRatio.R | 7 Luminescence-0.9.9/Luminescence/tests/testthat/test_calc_ThermalLifetime.R | 25 Luminescence-0.9.9/Luminescence/tests/testthat/test_calc_WodaFuchs2008.R | 10 Luminescence-0.9.9/Luminescence/tests/testthat/test_calc_gSGC.R | 10 Luminescence-0.9.9/Luminescence/tests/testthat/test_convert_Activity2Concentration.R | 5 Luminescence-0.9.9/Luminescence/tests/testthat/test_convert_Concentration2DoseRate.R | 5 Luminescence-0.9.9/Luminescence/tests/testthat/test_convert_PSL2CSV.R | 7 Luminescence-0.9.9/Luminescence/tests/testthat/test_convert_RLum2Risoe.BINfileData.R | 10 Luminescence-0.9.9/Luminescence/tests/testthat/test_convert_Wavelength2Energy.R | 16 Luminescence-0.9.9/Luminescence/tests/testthat/test_convert_XYSG2CSV.R |only Luminescence-0.9.9/Luminescence/tests/testthat/test_extract_IrradiationTimes.R | 5 Luminescence-0.9.9/Luminescence/tests/testthat/test_fit_CWCurve.R | 8 Luminescence-0.9.9/Luminescence/tests/testthat/test_fit_LMCurve.R | 12 Luminescence-0.9.9/Luminescence/tests/testthat/test_fit_OSLLifeTimes.R | 3 Luminescence-0.9.9/Luminescence/tests/testthat/test_fit_SurfaceExposure.R | 18 Luminescence-0.9.9/Luminescence/tests/testthat/test_fit_ThermalQuenching.R | 5 Luminescence-0.9.9/Luminescence/tests/testthat/test_get_RLum.R | 22 Luminescence-0.9.9/Luminescence/tests/testthat/test_github.R | 35 Luminescence-0.9.9/Luminescence/tests/testthat/test_internals.R | 37 Luminescence-0.9.9/Luminescence/tests/testthat/test_merge_RLumDataCurve.R | 11 Luminescence-0.9.9/Luminescence/tests/testthat/test_merge_RisoeBINfileData.R | 7 Luminescence-0.9.9/Luminescence/tests/testthat/test_methods_DRAC.R | 62 - Luminescence-0.9.9/Luminescence/tests/testthat/test_names_RLum.R | 7 Luminescence-0.9.9/Luminescence/tests/testthat/test_plot_AbanicoPlot.R | 8 Luminescence-0.9.9/Luminescence/tests/testthat/test_plot_DRCSummary.R | 4 Luminescence-0.9.9/Luminescence/tests/testthat/test_plot_Functions.R | 12 Luminescence-0.9.9/Luminescence/tests/testthat/test_plot_GrowthCurve.R | 42 Luminescence-0.9.9/Luminescence/tests/testthat/test_plot_RLum.Analysis.R | 22 Luminescence-0.9.9/Luminescence/tests/testthat/test_plot_RLum.Data.Curve.R | 3 Luminescence-0.9.9/Luminescence/tests/testthat/test_plot_RLum.Data.Spectrum.R | 24 Luminescence-0.9.9/Luminescence/tests/testthat/test_plot_ROI.R |only Luminescence-0.9.9/Luminescence/tests/testthat/test_read_BIN2R.R | 54 Luminescence-0.9.9/Luminescence/tests/testthat/test_read_Daybreak2R.R | 15 Luminescence-0.9.9/Luminescence/tests/testthat/test_read_PSL2R.R | 13 Luminescence-0.9.9/Luminescence/tests/testthat/test_read_RF2R.R | 3 Luminescence-0.9.9/Luminescence/tests/testthat/test_read_SPE2R.R | 18 Luminescence-0.9.9/Luminescence/tests/testthat/test_read_XSYG2R.R | 7 Luminescence-0.9.9/Luminescence/tests/testthat/test_replicate_RLum.R | 5 Luminescence-0.9.9/Luminescence/tests/testthat/test_report_RLum.R | 3 Luminescence-0.9.9/Luminescence/tests/testthat/test_scale_GammaDose.R | 32 Luminescence-0.9.9/Luminescence/tests/testthat/test_smooth_RLum.R | 17 Luminescence-0.9.9/Luminescence/tests/testthat/test_structure_RLum.R | 7 Luminescence-0.9.9/Luminescence/tests/testthat/test_subset_RLum.R | 12 Luminescence-0.9.9/Luminescence/tests/testthat/test_template_DRAC.R | 11 Luminescence-0.9.9/Luminescence/tests/testthat/test_use_DRAC.R | 7 Luminescence-0.9.9/Luminescence/tests/testthat/test_verify_SingleGrainData.R | 9 Luminescence-0.9.9/Luminescence/tests/testthat/test_write_R2BIN.R | 5 Luminescence-0.9.9/Luminescence/tests/testthat/test_write_RLum2CSV.R | 5 Luminescence-0.9.9/Luminescence/tests/testthat/test_zzz.R | 3 252 files changed, 2247 insertions(+), 1867 deletions(-)
Title: Harrell Miscellaneous
Description: Contains many functions useful for data
analysis, high-level graphics, utility operations, functions for
computing sample size and power, importing and annotating datasets,
imputing missing values, advanced table making, variable clustering,
character string manipulation, conversion of R objects to LaTeX and html code,
and recoding variables.
Author: Frank E Harrell Jr <fh@fharrell.com>, with
contributions from Charles Dupont and many others.
Maintainer: Frank E Harrell Jr <fh@fharrell.com>
Diff between Hmisc versions 4.4-1 dated 2020-08-10 and 4.4-2 dated 2020-11-29
DESCRIPTION | 8 +- MD5 | 33 +++++--- NAMESPACE | 2 NEWS | 11 ++ R/dotchartpl.s | 189 +++++++++++++++++++++++++-------------------------- R/gbayesSeqSim.r |only R/ggfreqScatter.r | 4 - R/pairUpDiff.r |only R/popower.s | 58 +++++++++++++-- R/rcorr.s | 2 R/scat1d.s | 40 +++++++--- R/summaryS.s | 16 ++-- man/dotchartpl.Rd | 44 +++++++++++ man/estSeqSim.Rd |only man/gbayes.Rd | 1 man/gbayesSeqSim.Rd |only man/ggfreqScatter.Rd | 7 + man/pairUpDiff.Rd |only man/popower.Rd | 14 ++- man/scat1d.Rd | 18 +++- 20 files changed, 290 insertions(+), 157 deletions(-)
Title: Mapping of a Categorical Variable in a Panel Dataset
Description: There are offered automatic methods to map a categorical variable according to a specific encoding across different time points.
The main rule is to replicate the observation if it could be assign to a few categories.
Then using simple frequencies or statistical methods to approximate probabilities of being assign to each of them.
This algorithm was invented and implemented in the paper by (Nasinski, Majchrowska and Broniatowska (2020) <doi:10.24425/cejeme.2020.134747>).
Author: Maciej Nasinski [aut, cre]
Maintainer: Maciej Nasinski <nasinski.maciej@gmail.com>
Diff between cat2cat versions 0.1.3 dated 2020-09-22 and 0.1.7 dated 2020-11-29
cat2cat-0.1.3/cat2cat/data/datalist |only cat2cat-0.1.7/cat2cat/DESCRIPTION | 17 - cat2cat-0.1.7/cat2cat/MD5 | 36 +- cat2cat-0.1.7/cat2cat/NAMESPACE | 1 cat2cat-0.1.7/cat2cat/NEWS.md | 19 + cat2cat-0.1.7/cat2cat/R/cat2cat.R | 447 ++++++++++++++--------------- cat2cat-0.1.7/cat2cat/R/cat2cat_agg.R | 10 cat2cat-0.1.7/cat2cat/R/data.R | 6 cat2cat-0.1.7/cat2cat/R/lms.R | 2 cat2cat-0.1.7/cat2cat/build |only cat2cat-0.1.7/cat2cat/data/occup_small.rda |binary cat2cat-0.1.7/cat2cat/data/verticals.rda |binary cat2cat-0.1.7/cat2cat/data/verticals2.rda |binary cat2cat-0.1.7/cat2cat/inst |only cat2cat-0.1.7/cat2cat/man/occup.Rd | 2 cat2cat-0.1.7/cat2cat/man/occup_small.Rd | 2 cat2cat-0.1.7/cat2cat/man/summary_c2c.Rd | 2 cat2cat-0.1.7/cat2cat/man/verticals.Rd | 1 cat2cat-0.1.7/cat2cat/man/verticals2.Rd | 1 cat2cat-0.1.7/cat2cat/vignettes |only 20 files changed, 282 insertions(+), 264 deletions(-)