Title: Election Vote Counting
Description: Counting election votes and determining election results by different methods, including
the single transferable vote or ranked choice (Newland and F.S. Britton, 1997;
ISBN: 0903291185), approval, score, plurality, condorcet and two-round runoff methods.
Author: Hana Sevcikova, Bernard Silverman, Adrian Raftery
Maintainer: Hana Sevcikova<hanas@uw.edu>
Diff between vote versions 1.2-1 dated 2020-02-03 and 2.0-1 dated 2020-12-03
ChangeLog | 16 +++ DESCRIPTION | 16 ++- MD5 | 38 ++++---- NAMESPACE | 19 ++++ R/check_votes.R | 45 ++++++++-- R/condorcet.R |only R/count_votes.R | 3 R/stv.R | 216 +++++++++++++++++++++++++++++++++++------------- R/two_round_runoff.R |only R/vote_by_sum.R | 35 ++++--- data/dublin_west.rda |only data/ims_approval.rda |binary data/ims_plurality.rda |binary data/ims_score.rda |binary data/ims_stv.rda |binary man/approval.Rd | 9 +- man/condorcet.Rd |only man/count.votes.Rd | 14 +-- man/dublin_west.Rd |only man/score.Rd | 6 - man/stv.Rd | 61 +++++++++++-- man/two_round_runoff.Rd |only man/vote-package.Rd | 12 +- 23 files changed, 358 insertions(+), 132 deletions(-)
Title: A Minimal Tool Set for Gathering USDA Quick Stat Data for
Analysis and Visualization
Description: Provides a consistent API to pull United States
Department of Agriculture census and survey data from the National
Agricultural Statistics Service (NASS) QuickStats service.
Author: Brad Lindblad [aut, cre],
Michael Thomas [ctb],
Alex Mindeman [ctb]
Maintainer: Brad Lindblad <bradley.lindblad@gmail.com>
Diff between tidyUSDA versions 0.2.9 dated 2020-07-24 and 0.3.0 dated 2020-12-03
tidyUSDA-0.2.9/tidyUSDA/man/figures |only tidyUSDA-0.3.0/tidyUSDA/DESCRIPTION | 16 ++--- tidyUSDA-0.3.0/tidyUSDA/MD5 | 19 +++--- tidyUSDA-0.3.0/tidyUSDA/NEWS.md | 3 + tidyUSDA-0.3.0/tidyUSDA/R/getQuickstat.R | 45 ++++++++++++++-- tidyUSDA-0.3.0/tidyUSDA/README.md | 4 - tidyUSDA-0.3.0/tidyUSDA/build/vignette.rds |binary tidyUSDA-0.3.0/tidyUSDA/inst/doc/using_tidyusda.Rmd | 4 - tidyUSDA-0.3.0/tidyUSDA/inst/doc/using_tidyusda.html | 52 ++++++++++++++++++- tidyUSDA-0.3.0/tidyUSDA/man/tidyUSDA.Rd | 4 - tidyUSDA-0.3.0/tidyUSDA/vignettes/using_tidyusda.Rmd | 4 - 11 files changed, 119 insertions(+), 32 deletions(-)
Title: Empirical Dynamic Modeling ('EDM')
Description: An implementation of 'EDM' algorithms based on research software developed for internal use at the Sugihara Lab ('UCSD/SIO'). The package is implemented with 'Rcpp' wrappers around the 'cppEDM' library. It implements the 'simplex' projection method from Sugihara & May (1990) <doi:10.1038/344734a0>, the 'S-map' algorithm from Sugihara (1994) <doi:10.1098/rsta.1994.0106>, convergent cross mapping described in Sugihara et al. (2012) <doi:10.1126/science.1227079>, and, 'multiview embedding' described in Ye & Sugihara (2016) <doi:10.1126/science.aag0863>.
Author: Joseph Park [aut, cre] (<https://orcid.org/0000-0001-5411-1409>),
Cameron Smith [aut],
George Sugihara [aut, ccp] (<https://orcid.org/0000-0002-2863-6946>),
Ethan Deyle [aut] (<https://orcid.org/0000-0001-8704-8434>),
Erik Saberski [ctb] (<https://orcid.org/0000-0002-6475-6187>),
Hao Ye [ctb] (<https://orcid.org/0000-0002-8630-1458>),
The Regents of the University of California [cph]
Maintainer: Joseph Park <JosephPark@IEEE.org>
Diff between rEDM versions 1.7.0 dated 2020-11-14 and 1.7.1 dated 2020-12-03
DESCRIPTION | 8 - MD5 | 22 +-- src/cppEDM/src/CCM.cc | 1 src/cppEDM/src/EDM.cc | 3 src/cppEDM/src/EDM.h | 5 src/cppEDM/src/EDM_Formatting.cc | 15 +- src/cppEDM/src/EDM_Neighbors.cc | 242 ++++++++++++++++++++------------------- src/cppEDM/src/Parameter.cc | 170 +++++++++++++++++++++++---- src/cppEDM/src/Parameter.h | 1 src/cppEDM/src/SMap.cc | 5 src/cppEDM/src/Simplex.cc | 11 + vignettes/rEDM-tutorial.html | 24 +-- 12 files changed, 321 insertions(+), 186 deletions(-)
Title: Unicode Data and Utilities
Description: Data from Unicode 13.0.0 and related utilities.
Author: Kurt Hornik [aut, cre] (<https://orcid.org/0000-0003-4198-9911>)
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between Unicode versions 13.0.0-1 dated 2020-03-16 and 13.0.0-2 dated 2020-12-03
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/sysdata.rda |binary man/u_blocks.Rd | 2 +- man/u_char_basics.Rd | 4 ++-- man/u_char_properties.Rd | 2 +- man/u_scripts.Rd | 2 +- 7 files changed, 14 insertions(+), 14 deletions(-)
Title: Convex Clustering Methods and Clustering Indexes
Description: Convex Clustering methods, including K-means algorithm,
On-line Update algorithm (Hard Competitive Learning) and Neural Gas
algorithm (Soft Competitive Learning), and calculation of several
indexes for finding the number of clusters in a data set.
Author: Evgenia Dimitriadou [aut],
Kurt Hornik [ctb, cre]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between cclust versions 0.6-21 dated 2017-01-17 and 0.6-22 dated 2020-12-03
DESCRIPTION | 6 +++--- MD5 | 4 ++-- man/Rindexes.Rd | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Text Analysis Utilities
Description: Utilities for text analysis.
Author: Christian Buchta [aut],
Kurt Hornik [aut, cre] (<https://orcid.org/0000-0003-4198-9911>),
Ingo Feinerer [aut],
David Meyer [aut]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between tau versions 0.0-21 dated 2019-03-04 and 0.0-22 dated 2020-12-03
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/sysdata.rda |binary man/translate.Rd | 2 +- 4 files changed, 7 insertions(+), 7 deletions(-)
Title: Systematic Screening of Study Data for Subgroup Effects
Description: Identifying outcome relevant subgroups has now become as simple as possible! The formerly lengthy and tedious search for the needle in a haystack will be replaced by a single, comprehensive and coherent presentation.
The central result of a subgroup screening is a diagram in which each single dot stands for a subgroup.
The diagram may show thousands of them. The position of the dot in the diagram is determined by the
sample size of the subgroup and the statistical measure of the treatment effect in that subgroup. The
sample size is shown on the horizontal axis while the treatment effect is displayed on the vertical axis. Furthermore,
the diagram shows the line of no effect and the overall study results. For small subgroups, which
are found on the left side of the plot, larger random deviations from the mean study effect are expected,
while for larger subgroups only small deviations from the study mean can be expected to be chance findings.
So for a study with no conspicuous subgroup effects, the dots in the figure are expected to form a
kind of funnel. Any deviations from this funnel shape hint to conspicuous subgroups.
This approach was presented in Muysers (2020) <doi:10.1007/s43441-019-00082-6> and referenced in Ballarini (2020) <doi:10.1002/pst.2012>.
New to version 3 is the Automatic Screening of one- or MUlti-factorial Subgroups (ASMUS) for documentation of the structured review of subgroup findings.
Author: Bodo Kirsch, Steffen Jeske, Susanne Lippert, Thomas Schmelter, Christoph Muysers, Hermann Kulmann
Maintainer: Bodo Kirsch <bodo.kirsch@bayer.com>
Diff between subscreen versions 3.0.1 dated 2020-10-27 and 3.0.2 dated 2020-12-03
DESCRIPTION | 8 - MD5 | 14 +-- NEWS.md | 35 +++++-- R/subscreencalc.R | 186 ++++++++++++++++++++--------------------- R/subscreenshow.R | 152 ++++++++++++++++----------------- inst/doc/subscreen.html | 4 inst/shiny-app/subscreen/app.R | 122 ++++++++++++++------------ man/subscreencalc.Rd | 7 - 8 files changed, 271 insertions(+), 257 deletions(-)
Title: Interface for MOA Stream Clustering Algorithms
Description: Interface for data stream clustering algorithms implemented in the MOA (Massive Online Analysis) framework (Albert Bifet, Geoff Holmes, Richard Kirkby, Bernhard Pfahringer (2010). MOA: Massive Online Analysis, Journal of Machine Learning Research 11: 1601-1604).
Author: Michael Hahsler [aut, cre, cph],
John Forrest [aut, cph],
Matthew Bolanos [ctb],
Matthias Carnein [ctb],
Dalibor Krleža [ctb]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between streamMOA versions 1.2-2 dated 2019-05-15 and 1.2-3 dated 2020-12-03
DESCRIPTION | 17 ++++--- MD5 | 33 ++++++++------- NAMESPACE | 5 ++ NEWS.md | 8 +++ R/DSC_DenStream.R | 2 R/DSC_MCOD.R |only R/DSC_MOA.R | 6 ++ README.md | 2 build/partial.rdb |only build/vignette.rds |binary inst/doc/streamMOA.R | 58 +++++++++++++++++++++++++++ inst/doc/streamMOA.Rnw | 88 +++++++++++++++++++++++++++++++++++++++++ inst/doc/streamMOA.pdf |binary inst/java/StreamMOA.jar |binary java/Makefile | 4 - java/StreamMOA.java | 46 ++++++++------------- java/StreamMOA_MCOD.java |only java/StreamMOA_MCODResult.java |only man/DSC_MCOD.Rd |only vignettes/streamMOA.Rnw | 88 +++++++++++++++++++++++++++++++++++++++++ 20 files changed, 304 insertions(+), 53 deletions(-)
Title: Sparse Lightweight Arrays and Matrices
Description: Data structures and algorithms for sparse arrays and matrices,
based on index arrays and simple triplet representations, respectively.
Author: Kurt Hornik [aut, cre] (<https://orcid.org/0000-0003-4198-9911>),
David Meyer [aut],
Christian Buchta [aut]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between slam versions 0.1-47 dated 2019-12-21 and 0.1-48 dated 2020-12-03
DESCRIPTION | 6 +++--- MD5 | 4 ++-- man/foreign.Rd | 4 ++-- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Spherical k-Means Clustering
Description: Algorithms to compute spherical k-means partitions.
Features several methods, including a genetic and a fixed-point
algorithm and an interface to the CLUTO vcluster program.
Author: Kurt Hornik [aut, cre] (<https://orcid.org/0000-0003-4198-9911>),
Ingo Feinerer [aut],
Martin Kober [aut]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between skmeans versions 0.2-12 dated 2020-07-07 and 0.2-13 dated 2020-12-03
DESCRIPTION | 6 +++--- MD5 | 6 +++--- build/partial.rdb |binary man/skmeans.Rd | 8 ++++---- 4 files changed, 10 insertions(+), 10 deletions(-)
Title: Harvest Metadata Using OAI-PMH Version 2.0
Description: Harvest metadata using the Open Archives Initiative Protocol for Metadata
Harvesting (OAI-PMH) version 2.0 (for more information, see
<http://www.openarchives.org/OAI/openarchivesprotocol.html>).
Author: Kurt Hornik [aut, cre] (<https://orcid.org/0000-0003-4198-9911>)
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between OAIHarvester versions 0.3-0 dated 2017-07-10 and 0.3-1 dated 2020-12-03
DESCRIPTION | 11 ++++++----- MD5 | 14 ++++++++------ R/harvest.R | 9 ++++++--- build/vignette.rds |binary inst/doc/oaih.R | 1 - inst/doc/oaih.pdf |binary inst/po |only man/providers.Rd | 2 +- po |only 9 files changed, 21 insertions(+), 16 deletions(-)
Title: Nonlinear Nonparametric Statistics
Description: Nonlinear nonparametric statistics using partial moments. Partial moments are the elements of variance and asymptotically approximate the area of f(x). These robust statistics provide the basis for nonlinear analysis while retaining linear equivalences. NNS offers: Numerical integration, Numerical differentiation, Clustering, Correlation, Dependence, Causal analysis, ANOVA, Regression, Classification, Seasonality, Autoregressive modeling, Normalization and Stochastic dominance. All routines based on: Viole, F. and Nawrocki, D. (2013), Nonlinear Nonparametric Statistics: Using Partial Moments (ISBN: 1490523995).
Author: Fred Viole
Maintainer: Fred Viole <ovvo.financial.systems@gmail.com>
Diff between NNS versions 0.5.5 dated 2020-09-02 and 0.5.6 dated 2020-12-03
DESCRIPTION | 10 MD5 | 56 +-- NAMESPACE | 2 R/ARMA.R | 3 R/ARMA_optim.R | 4 R/Boost.R | 30 ++ R/Co_PM_dep.R | 4 R/Dependence.R | 14 R/Dependence_base.R | 23 - R/Internal_Functions.R | 5 R/Multivariate_Regression.R | 11 R/NNS_VAR.R | 50 +-- R/Partition_Map.R | 37 +- R/Regression.R | 102 +++---- R/Seasonality_Test.R | 12 R/Stack.R | 81 +++-- R/dy_d_wrt.R | 269 ++++++++++--------- R/gvload.R | 1 inst/doc/NNSvignette_Classification.html | 30 -- inst/doc/NNSvignette_Clustering_and_Regression.html | 209 +++++++++++--- inst/doc/NNSvignette_Correlation_and_Dependence.html | 32 +- inst/doc/NNSvignette_Forecasting.html | 28 - inst/doc/NNSvignette_Partial_Moments.html | 8 man/NNS.ARMA.optim.Rd | 2 man/NNS.boost.Rd | 3 man/NNS.dep.Rd | 4 man/NNS.reg.Rd | 5 man/NNS.stack.Rd | 3 man/dy.d_.Rd | 7 29 files changed, 632 insertions(+), 413 deletions(-)
Title: Cluster Ensembles
Description: CLUster Ensembles.
Author: Kurt Hornik [aut, cre] (<https://orcid.org/0000-0003-4198-9911>),
Walter Böhm [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between clue versions 0.3-57 dated 2019-02-25 and 0.3-58 dated 2020-12-03
DESCRIPTION | 6 +++--- MD5 | 28 ++++++++++++++-------------- build/partial.rdb |binary build/vignette.rds |binary data/CKME.rda |binary data/Cassini.rda |binary data/GVME.rda |binary data/GVME_Consensus.rda |binary data/Kinship82.rda |binary data/Kinship82_Consensus.rda |binary data/Phonemes.rda |binary inst/doc/clue.R | 1 - inst/doc/clue.pdf |binary man/cl_agreement.Rd | 2 +- man/cl_bag.Rd | 2 +- 15 files changed, 19 insertions(+), 20 deletions(-)
Title: Graphics in the Context of Analyzing High-Throughput Data
Description: Additional options for making graphics in the context of analyzing high-throughput data are available here.
This includes automatic segmenting of the current device (eg window) to accommodate multiple new plots,
automatic checking for optimal location of legends in plots, small histograms to insert as legends,
histograms re-transforming axis labels to linear when plotting log2-transformed data,
a violin-plot <doi:10.1080/00031305.1998.10480559> function for a wide variety of input-formats,
principal components analysis (PCA) <doi:10.1080/14786440109462720> with bag-plots <doi:10.1080/00031305.1999.10474494> to highlight and compare the center areas for groups of samples,
generic MA-plots (differential- versus average-value plots) <doi:10.1093/nar/30.4.e15>,
staggered count plots and generation of mouse-over interactive html pages.
Author: Wolfgang Raffelsberger [aut, cre]
Maintainer: Wolfgang Raffelsberger <w.raffelsberger@unistra.fr>
Diff between wrGraph versions 1.1.0 dated 2020-11-21 and 1.1.1 dated 2020-12-03
DESCRIPTION | 6 - MD5 | 16 ++-- NAMESPACE | 1 R/imageW.R | 7 +- R/plotPCAw.R | 30 ++++---- R/plotW2Leg.R |only inst/doc/wrGraphVignette1.html | 143 +++++++++++++++++------------------------ man/imageW.Rd | 3 man/plotPCAw.Rd | 2 man/plotW2Leg.Rd |only 10 files changed, 96 insertions(+), 112 deletions(-)
Title: SYMPHONY in R
Description: An R interface to the SYMPHONY solver for mixed-integer linear programs.
Author: Reinhard Harter [aut],
Kurt Hornik [aut, cre] (<https://orcid.org/0000-0003-4198-9911>),
Stefan Theussl [aut],
Cyrille Szymanski [ctb],
Florian Schwendinger [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between Rsymphony versions 0.1-28 dated 2017-11-07 and 0.1-29 dated 2020-12-03
DESCRIPTION | 13 +++++++------ MD5 | 2 +- 2 files changed, 8 insertions(+), 7 deletions(-)
Title: Phylogenetic Ridge Regression Methods for Comparative Studies
Description: Functions for phylogenetic analysis (Castiglione et al, 2018 <doi:10.1111/2041-210X.12954>). The functions perform the estimation of phenotypic evolutionary rates, identification of phenotypic evolutionary rate shifts, quantification of direction and size of evolutionary change in multivariate traits, the computation of ontogenetic shape vectors and test for morphological convergence.
Author: Pasquale Raia, Silvia Castiglione, Carmela Serio, Alessandro Mondanaro, Marina Melchionna, Mirko Di Febbraro, Antonio Profico, Francesco Carotenuto
Maintainer: Pasquale Raia <pasquale.raia@unina.it>
Diff between RRphylo versions 2.4.11 dated 2020-09-25 and 2.5.0 dated 2020-12-03
DESCRIPTION | 10 MD5 | 46 + NAMESPACE | 4 R/RRphylo.R | 37 + R/angle.matrix.R | 2 R/fix.poly.R |only R/tree.merger.R |only build/vignette.rds |binary inst/CITATION | 99 +++- inst/doc/RRphylo.Rmd | 10 inst/doc/RRphylo.html | 271 +++++++++++ inst/doc/Tree-Manipulation.R | 430 ++++++++++++++++++ inst/doc/Tree-Manipulation.Rmd | 477 ++++++++++++++++++++ inst/doc/Tree-Manipulation.html | 944 +++++++++++++++++++++++++++++++++++++--- inst/doc/overfitRR.html | 48 ++ inst/doc/search.conv.html | 285 +++++++++++- inst/doc/search.shift.Rmd | 5 inst/doc/search.shift.html | 269 +++++++++++ inst/doc/search.trend.html | 271 +++++++++++ inst/doc/swapONE.html | 48 ++ man/RRphylo.Rd | 39 + man/fix.poly.Rd |only man/tree.merger.Rd |only vignettes/RRphylo.Rmd | 10 vignettes/Tree-Manipulation.Rmd | 477 ++++++++++++++++++++ vignettes/search.shift.Rmd | 5 26 files changed, 3633 insertions(+), 154 deletions(-)
Title: Statistical Inference for Partially Observed Markov Processes
Description: Tools for data analysis with partially observed Markov process (POMP) models (also known as stochastic dynamical systems, hidden Markov models, and nonlinear, non-Gaussian, state-space models). The package provides facilities for implementing POMP models, simulating them, and fitting them to time series data by a variety of frequentist and Bayesian methods. It is also a versatile platform for implementation of inference methods for general POMP models.
Author: Aaron A. King [aut, cre],
Edward L. Ionides [aut],
Carles Breto [aut],
Stephen P. Ellner [ctb],
Matthew J. Ferrari [ctb],
Bruce E. Kendall [ctb],
Michael Lavine [ctb],
Dao Nguyen [ctb],
Daniel C. Reuman [ctb],
Helen Wearing [ctb],
Simon N. Wood [ctb],
Sebastian Funk [ctb],
Steven G. Johnson [ctb],
Eamon B. O'Dea [ctb]
Maintainer: Aaron A. King <kingaa@umich.edu>
Diff between pomp versions 3.1 dated 2020-07-05 and 3.2 dated 2020-12-03
pomp-3.1/pomp/R/sobol.R |only pomp-3.2/pomp/DESCRIPTION | 41 ++-- pomp-3.2/pomp/MD5 | 283 +++++++++++++++-------------- pomp-3.2/pomp/NAMESPACE | 4 pomp-3.2/pomp/R/abc.R | 8 pomp-3.2/pomp/R/accumulators.R | 2 pomp-3.2/pomp/R/basic_components.R |only pomp-3.2/pomp/R/basic_probes.R | 2 pomp-3.2/pomp/R/blowflies.R | 6 pomp-3.2/pomp/R/bsflu.R | 4 pomp-3.2/pomp/R/bsmc2.R | 6 pomp-3.2/pomp/R/bsplines.R | 16 - pomp-3.2/pomp/R/builder.R | 9 pomp-3.2/pomp/R/cond_logLik.R | 4 pomp-3.2/pomp/R/covariate_table.R | 2 pomp-3.2/pomp/R/csnippet.R | 4 pomp-3.2/pomp/R/dacca.R | 6 pomp-3.2/pomp/R/deprecated.R |only pomp-3.2/pomp/R/design.R | 15 - pomp-3.2/pomp/R/distributions.R | 2 pomp-3.2/pomp/R/dmeasure_spec.R | 4 pomp-3.2/pomp/R/dprocess_spec.R | 4 pomp-3.2/pomp/R/ebola.R | 4 pomp-3.2/pomp/R/eff_sample_size.R | 2 pomp-3.2/pomp/R/elementary_algorithms.R |only pomp-3.2/pomp/R/estimation_algorithms.R |only pomp-3.2/pomp/R/filter_mean.R | 2 pomp-3.2/pomp/R/filter_traj.R | 2 pomp-3.2/pomp/R/flow.R | 2 pomp-3.2/pomp/R/gompertz.R | 4 pomp-3.2/pomp/R/kalman.R | 6 pomp-3.2/pomp/R/measles.R | 6 pomp-3.2/pomp/R/melt.R | 2 pomp-3.2/pomp/R/mif2.R | 12 - pomp-3.2/pomp/R/nlf.R | 4 pomp-3.2/pomp/R/ou2.R | 4 pomp-3.2/pomp/R/parameter_trans.R | 6 pomp-3.2/pomp/R/parus.R | 4 pomp-3.2/pomp/R/pfilter.R | 8 pomp-3.2/pomp/R/pipe.R | 2 pomp-3.2/pomp/R/pmcmc.R | 6 pomp-3.2/pomp/R/pomp-package.R | 72 ++++--- pomp-3.2/pomp/R/pomp.R | 13 - pomp-3.2/pomp/R/pomp_examp.R | 6 pomp-3.2/pomp/R/pred_mean.R | 2 pomp-3.2/pomp/R/pred_var.R | 2 pomp-3.2/pomp/R/prior_spec.R | 6 pomp-3.2/pomp/R/probe.R | 6 pomp-3.2/pomp/R/probe_match.R | 6 pomp-3.2/pomp/R/profileDesign.R |only pomp-3.2/pomp/R/profile_design.R | 26 +- pomp-3.2/pomp/R/ricker.R | 4 pomp-3.2/pomp/R/rinit_spec.R | 4 pomp-3.2/pomp/R/rmeasure_spec.R | 4 pomp-3.2/pomp/R/rprocess_spec.R | 4 pomp-3.2/pomp/R/runifDesign.R |only pomp-3.2/pomp/R/runif_design.R | 8 pomp-3.2/pomp/R/rw2.R | 4 pomp-3.2/pomp/R/saved_states.R | 2 pomp-3.2/pomp/R/simulate.R | 4 pomp-3.2/pomp/R/sir.R | 4 pomp-3.2/pomp/R/skeleton_spec.R | 4 pomp-3.2/pomp/R/sliceDesign.R |only pomp-3.2/pomp/R/slice_design.R | 12 - pomp-3.2/pomp/R/sobolDesign.R |only pomp-3.2/pomp/R/sobol_design.R |only pomp-3.2/pomp/R/spect.R | 6 pomp-3.2/pomp/R/spect_match.R | 4 pomp-3.2/pomp/R/traj_match.R | 2 pomp-3.2/pomp/R/trajectory.R | 3 pomp-3.2/pomp/R/transformations.R | 2 pomp-3.2/pomp/R/userdata.R | 4 pomp-3.2/pomp/R/verhulst.R | 2 pomp-3.2/pomp/R/workhorses.R | 25 +- pomp-3.2/pomp/R/wpfilter.R | 6 pomp-3.2/pomp/build |only pomp-3.2/pomp/inst/NEWS | 20 ++ pomp-3.2/pomp/inst/NEWS.Rd | 11 + pomp-3.2/pomp/man/abc.Rd | 17 + pomp-3.2/pomp/man/accumulators.Rd | 5 pomp-3.2/pomp/man/basic_components.Rd |only pomp-3.2/pomp/man/basic_probes.Rd | 4 pomp-3.2/pomp/man/blowflies.Rd | 10 - pomp-3.2/pomp/man/bsflu.Rd | 8 pomp-3.2/pomp/man/bsmc2.Rd | 18 + pomp-3.2/pomp/man/cond_logLik.Rd | 8 pomp-3.2/pomp/man/covariate_table.Rd | 5 pomp-3.2/pomp/man/csnippet.Rd | 13 + pomp-3.2/pomp/man/dacca.Rd | 10 - pomp-3.2/pomp/man/deprecated.Rd |only pomp-3.2/pomp/man/design.Rd | 67 +++--- pomp-3.2/pomp/man/distributions.Rd | 5 pomp-3.2/pomp/man/dmeasure.Rd | 4 pomp-3.2/pomp/man/dmeasure_spec.Rd | 13 + pomp-3.2/pomp/man/dprior.Rd | 4 pomp-3.2/pomp/man/dprocess.Rd | 4 pomp-3.2/pomp/man/dprocess_spec.Rd | 13 + pomp-3.2/pomp/man/ebola.Rd | 8 pomp-3.2/pomp/man/eff_sample_size.Rd | 5 pomp-3.2/pomp/man/elementary_algorithms.Rd |only pomp-3.2/pomp/man/estimation_algorithms.Rd |only pomp-3.2/pomp/man/filter_mean.Rd | 5 pomp-3.2/pomp/man/filter_traj.Rd | 5 pomp-3.2/pomp/man/flow.Rd | 4 pomp-3.2/pomp/man/gompertz.Rd | 6 pomp-3.2/pomp/man/hitch.Rd | 5 pomp-3.2/pomp/man/kalman.Rd | 29 ++ pomp-3.2/pomp/man/macros/citations.Rd | 20 +- pomp-3.2/pomp/man/measles.Rd | 10 - pomp-3.2/pomp/man/melt.Rd | 2 pomp-3.2/pomp/man/mif2.Rd | 24 +- pomp-3.2/pomp/man/nlf.Rd | 13 + pomp-3.2/pomp/man/ou2.Rd | 6 pomp-3.2/pomp/man/parameter_trans.Rd | 15 + pomp-3.2/pomp/man/partrans.Rd | 4 pomp-3.2/pomp/man/parus.Rd | 8 pomp-3.2/pomp/man/pfilter.Rd | 21 +- pomp-3.2/pomp/man/pipe.Rd | 2 pomp-3.2/pomp/man/pmcmc.Rd | 18 + pomp-3.2/pomp/man/pomp-package.Rd | 90 ++++++--- pomp-3.2/pomp/man/pomp.Rd | 17 + pomp-3.2/pomp/man/pomp_examp.Rd | 8 pomp-3.2/pomp/man/pred_mean.Rd | 5 pomp-3.2/pomp/man/pred_var.Rd | 5 pomp-3.2/pomp/man/prior_spec.Rd | 15 + pomp-3.2/pomp/man/probe.Rd | 18 + pomp-3.2/pomp/man/probe_match.Rd | 17 + pomp-3.2/pomp/man/ricker.Rd | 6 pomp-3.2/pomp/man/rinit.Rd | 4 pomp-3.2/pomp/man/rinit_spec.Rd | 13 + pomp-3.2/pomp/man/rmeasure.Rd | 4 pomp-3.2/pomp/man/rmeasure_spec.Rd | 13 + pomp-3.2/pomp/man/rprior.Rd | 4 pomp-3.2/pomp/man/rprocess.Rd | 4 pomp-3.2/pomp/man/rprocess_spec.Rd | 13 + pomp-3.2/pomp/man/rw2.Rd | 6 pomp-3.2/pomp/man/saved_states.Rd | 5 pomp-3.2/pomp/man/simulate.Rd | 14 + pomp-3.2/pomp/man/sir.Rd | 6 pomp-3.2/pomp/man/skeleton.Rd | 4 pomp-3.2/pomp/man/skeleton_spec.Rd | 13 + pomp-3.2/pomp/man/spect.Rd | 18 + pomp-3.2/pomp/man/spect_match.Rd | 13 + pomp-3.2/pomp/man/traj_match.Rd | 8 pomp-3.2/pomp/man/trajectory.Rd | 10 + pomp-3.2/pomp/man/transformations.Rd | 5 pomp-3.2/pomp/man/userdata.Rd | 7 pomp-3.2/pomp/man/verhulst.Rd | 4 pomp-3.2/pomp/man/workhorses.Rd | 9 pomp-3.2/pomp/man/wpfilter.Rd | 21 +- 150 files changed, 995 insertions(+), 578 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-05-27 1.0.1
2015-05-07 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-05-14 0.0.3
2018-04-08 0.0.2
2018-03-01 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-15 0.2.2
2019-07-01 0.2.1
2019-02-11 0.2.0
2018-08-24 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-12-19 0.1.1
2018-08-17 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-29 0.1.3
2020-04-17 0.1.2
2019-02-13 0.1.1
Title: Data Operator
Description: Flexibly convert data between long and wide format using just two
functions: reshape_toLong() and reshape_toWide().
Author: Jing Zhang, Zhi Jin
Maintainer: Jing Zhang<zj391120@163.com>
Diff between do versions 1.5.0.0 dated 2020-09-17 and 1.6.0.0 dated 2020-12-03
DESCRIPTION | 6 ++--- MD5 | 13 ++++++++--- NAMESPACE | 6 +++++ R/complete.data.R |only R/detach_rm_all.R |only R/knife.R |only inst/doc/version-update.html | 48 +++++++++++++++++++++++++++++++++++++++++++ man/complete.data.Rd |only man/detach2.Rd |only man/knife.Rd |only man/rm_all.Rd |only 11 files changed, 67 insertions(+), 6 deletions(-)
Title: Rcmdr Teaching Demos Plug-in
Description: Provides an Rcmdr "plug-in" based on the TeachingDemos package, and is primarily for illustrative purposes.
Author: John Fox <jfox@mcmaster.ca>
Maintainer: John Fox <jfox@mcmaster.ca>
Diff between RcmdrPlugin.TeachingDemos versions 1.1-0 dated 2016-11-12 and 1.2-0 dated 2020-12-03
DESCRIPTION | 17 +++---- MD5 | 10 ++-- NAMESPACE | 12 ++--- NEWS | 16 ++++-- inst/etc/menus.txt | 50 ++++++++++----------- man/RcmdrPlugin.TeachingDemos-package.Rd | 72 +++++++++++++++---------------- 6 files changed, 92 insertions(+), 85 deletions(-)
More information about RcmdrPlugin.TeachingDemos at CRAN
Permanent link
Title: Tools to Match Financial Portfolios with Climate Data
Description: These tools implement in R a fundamental part of
the software 'PACTA' (Paris Agreement Capital Transition Assessment),
which is a free tool that calculates the alignment between financial
portfolios and climate scenarios (<https://2degrees-investing.org/>).
Financial institutions use 'PACTA' to study how their capital
allocation impacts the climate. This package matches data from
financial portfolios to asset level data from market-intelligence
databases (e.g. power plant capacities, emission factors, etc.). This
is the first step to assess if a financial portfolio aligns with
climate goals.
Author: Mauro Lepore [aut, cre, ctr] (<https://orcid.org/0000-0002-1986-7988>),
Jackson Hoffart [aut] (<https://orcid.org/0000-0002-8600-5042>),
Klaus Hagedorn [aut],
Florence Palandri [aut],
Evgeny Petrovsky [aut],
2 Degrees Investing Initiative [cph, fnd]
Maintainer: Mauro Lepore <maurolepore@gmail.com>
Diff between r2dii.match versions 0.0.6 dated 2020-10-01 and 0.0.7 dated 2020-12-03
r2dii.match-0.0.6/r2dii.match/R/crucial_columns.R |only r2dii.match-0.0.6/r2dii.match/tests/testthat/output |only r2dii.match-0.0.6/r2dii.match/tests/testthat/ref-add_sector_and_borderline |only r2dii.match-0.0.6/r2dii.match/tests/testthat/ref-match-name |only r2dii.match-0.0.7/r2dii.match/DESCRIPTION | 7 r2dii.match-0.0.7/r2dii.match/MD5 | 48 +-- r2dii.match-0.0.7/r2dii.match/NEWS.md | 5 r2dii.match-0.0.7/r2dii.match/R/crucial_lbk.R |only r2dii.match-0.0.7/r2dii.match/R/imports.R | 10 r2dii.match-0.0.7/r2dii.match/R/match_name.R | 28 +- r2dii.match-0.0.7/r2dii.match/R/prioritize.R | 17 - r2dii.match-0.0.7/r2dii.match/R/restructure_ald.R | 17 - r2dii.match-0.0.7/r2dii.match/README.md | 12 r2dii.match-0.0.7/r2dii.match/inst/WORDLIST | 23 - r2dii.match-0.0.7/r2dii.match/man/crucial_lbk.Rd | 2 r2dii.match-0.0.7/r2dii.match/man/match_name.Rd | 5 r2dii.match-0.0.7/r2dii.match/tests/testthat/_snaps |only r2dii.match-0.0.7/r2dii.match/tests/testthat/helper-fake_lbk.R | 73 ----- r2dii.match-0.0.7/r2dii.match/tests/testthat/helper-round_dbl.R |only r2dii.match-0.0.7/r2dii.match/tests/testthat/test-add_sector_and_borderline.R | 13 r2dii.match-0.0.7/r2dii.match/tests/testthat/test-crucial_lbk.R |only r2dii.match-0.0.7/r2dii.match/tests/testthat/test-helper-fake_lbk.R | 4 r2dii.match-0.0.7/r2dii.match/tests/testthat/test-match_name.R | 132 +++++++--- r2dii.match-0.0.7/r2dii.match/tests/testthat/test-prioritize.R | 29 +- r2dii.match-0.0.7/r2dii.match/tests/testthat/test-restructure_ald.R | 2 r2dii.match-0.0.7/r2dii.match/tests/testthat/test-to_alias.R | 2 26 files changed, 229 insertions(+), 200 deletions(-)
Title: Sequential Parameter Optimization Toolbox
Description: A set of tools for model based optimization and tuning of
algorithms. It includes surrogate models, optimizers, and design of experiment
approaches. The main interface is spot, which uses sequentially updated
surrogate models for the purpose of efficient optimization. The main goal is
to ease the burden of objective function evaluations, when a single evaluation
requires a significant amount of resources.
Author: Thomas Bartz-Beielstein [aut, cre],
Joerg Stork [aut],
Martin Zaefferer [aut],
Margarita Rebolledo [ctb],
Christian Lasarczyk [ctb],
Frederik Rehbach [aut]
Maintainer: Thomas Bartz-Beielstein <tbb@bartzundbartz.de>
Diff between SPOT versions 2.1.2 dated 2020-10-28 and 2.1.8 dated 2020-12-03
DESCRIPTION | 14 MD5 | 50 NAMESPACE | 9 NEWS.md | 20 R/buildLasso.R |only R/funContinuous.R | 11 R/initialInputCheck.R | 8 R/modelMarkovChain.R | 4 R/objectiveFunctionEvaluation.R | 148 +- R/optimES.R | 1 R/optimNLOPTR.R | 60 + R/selectN.R | 33 R/spot.R | 513 ++++++--- inst/doc/SPOTVignetteNutshell.R | 4 inst/doc/SPOTVignetteNutshell.Rmd | 4 inst/doc/SPOTVignetteNutshell.html | 1977 +++++++++++++++++++------------------ man/buildLasso.Rd |only man/initialInputCheck.Rd | 4 man/objectiveFunctionEvaluation.Rd | 2 man/optimNLOPTR.Rd | 4 man/predict.spotLassoModel.Rd |only man/print.spotLassoModel.Rd |only man/selectN.Rd | 2 man/spot.Rd | 48 man/spotControl.Rd | 30 man/spotLoop.Rd | 26 tests/testthat/test.verbosity.R | 33 vignettes/SPOTVignetteNutshell.Rmd | 4 28 files changed, 1686 insertions(+), 1323 deletions(-)
Title: Site Adaptation of Solar Irradiance Modeled Series
Description: The SiteAdapt procedure improves the accuracy of modeled solar irradiance series
through site-adaptation with coincident ground-based measurements relying on the use of a
regression preprocessing followed by an empirical quantile mapping (eQM) correction.
Fernandez-Peruchena et al (2020) <doi:10.3390/rs12132127>.
Author: Carlos M. Fernandez-Peruchena
Maintainer: Carlos M. Fernandez-Peruchena <cfernandez@cener.com>
Diff between SiteAdapt versions 1.0.0 dated 2020-07-07 and 1.1.0 dated 2020-12-03
DESCRIPTION | 10 ++++---- MD5 | 44 +++++++++++++++++++------------------- NAMESPACE | 2 - R/SOLIS.r | 2 + R/adapt_process.R | 10 ++++---- R/calibration_2016.R | 4 --- R/m_Kasten.r | 2 + R/observed_2013_2016.R | 4 --- R/post_process.R | 2 + R/pre_process.R | 48 +++++++++++++++++++++++++++++++++++------- R/site_adapt.R | 35 ++++++++++++++++++++---------- data/calibration_2016.RData |binary data/observed_2013_2016.RData |binary data/target_2013_2016.RData |binary man/SOLIS.Rd | 3 ++ man/adapt_process.Rd | 3 ++ man/calibration_2016.Rd | 8 +++---- man/m_Kasten.Rd | 3 ++ man/observed_2013_2016.Rd | 9 ++----- man/post_process.Rd | 3 ++ man/pre_process.Rd | 3 ++ man/site_adapt.Rd | 20 ++++++++++------- man/target_2013_2016.Rd | 4 ++- 23 files changed, 141 insertions(+), 78 deletions(-)
Title: Multiple Pairwise Comparison Tests
Description: Multiple pairwise comparison tests on tidy data for
one-way analysis of variance for both between-subjects and
within-subjects designs. Currently, it supports only the most common
types of statistical analyses and tests: parametric (Welch's and
Student's t-test), nonparametric (Durbin-Conover and Dunn test),
robust (Yuen’s trimmed means test), and Bayes Factor (Student's
t-test).
Author: Indrajeet Patil [cre, aut, cph]
(<https://orcid.org/0000-0003-1995-6531>, @patilindrajeets)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between pairwiseComparisons versions 3.1.0 dated 2020-10-28 and 3.1.1 dated 2020-12-03
DESCRIPTION | 13 MD5 | 28 +- NAMESPACE | 12 NEWS.md | 21 + R/global_vars.R | 1 R/helpers.R | 45 --- R/pairwise_comparisons.R | 55 +--- R/reexports.R | 16 - README.md | 287 ++++++++++----------- inst/WORDLIST | 1 man/figures/README-ggsignif-1.png |binary man/pairwise_comparisons.Rd | 17 - man/reexports.Rd | 8 tests/testthat/test-pairwise_comparisons_between.R | 10 tests/testthat/test-pairwise_comparisons_within.R | 38 -- 15 files changed, 224 insertions(+), 328 deletions(-)
More information about pairwiseComparisons at CRAN
Permanent link
Title: Photometry Tools
Description: Core package containing all the tools for simple and advanced source extraction. This is used to create inputs for 'ProFit', or for source detection, extraction and photometry in its own right.
Author: Aaron Robotham
Maintainer: Aaron Robotham <aaron.robotham@uwa.edu.au>
Diff between ProFound versions 1.3.4 dated 2018-11-28 and 1.14.1 dated 2020-12-03
DESCRIPTION | 17 MD5 | 162 +++-- NAMESPACE | 2 NEWS | 4 R/RcppExports.R | 31 + R/profoundEllipse.R | 6 R/profoundFitMagPSF.R |only R/profoundFluxDeblend.R |only R/profoundMakeStack.R | 51 + R/profoundMultiBand.R | 175 ++++- R/profoundPixelCorrelation.R | 39 - R/profoundProFound.R | 593 +++++++++++++------ R/profoundSegim.R | 973 +++++++++++++++++++++++--------- R/profoundSky.R | 609 +++++++++++++------- R/profoundUtility.R | 385 ++++++++---- build/partial.rdb |binary build/vignette.rds |binary inst/doc/ProFound-Colour.Rmd | 2 inst/doc/ProFound-Colour.html | 428 ++++++++++---- inst/doc/ProFound-Complex-Fit.html | 549 ++++++++++++------ inst/doc/ProFound-Segim-Maps.Rmd | 2 inst/doc/ProFound-Segim-Maps.html | 367 +++++++++--- inst/doc/ProFound-Simulated-Images.html | 589 +++++++++++++------ inst/doc/ProFound-Sky_Shenanigans.R | 2 inst/doc/ProFound-Sky_Shenanigans.Rmd | 2 inst/doc/ProFound-Sky_Shenanigans.html | 553 ++++++++++++------ inst/doc/ProFound-Source-Finding.R | 2 inst/doc/ProFound-Source-Finding.Rmd | 2 inst/doc/ProFound-Source-Finding.html | 449 +++++++++++--- inst/doc/ProFound-Stack-Images.html | 425 ++++++++++--- inst/doc/ProFound-TipsTricks.R |only inst/doc/ProFound-TipsTricks.Rmd |only inst/doc/ProFound-TipsTricks.html |only inst/extdata/IRdata |only man/ProFound-package.Rd | 10 man/plot.fitmagpsf.Rd |only man/plot.profound.Rd | 2 man/profoundCatMerge.Rd | 2 man/profoundChisel.Rd |only man/profoundDrawEllipse.Rd | 2 man/profoundFitMagPSF.Rd |only man/profoundFlux2Mag.Rd | 4 man/profoundFluxDeblend.Rd | 59 + man/profoundGainConvert.Rd | 4 man/profoundGainEst.Rd | 2 man/profoundGetEllipse.Rd | 2 man/profoundGetEllipses.Rd | 2 man/profoundGetEllipsesPlot.Rd | 2 man/profoundImBlur.Rd | 2 man/profoundMag2Mu.Rd | 2 man/profoundMakeSegim.Rd | 69 -- man/profoundMakeSegimExpand.Rd | 6 man/profoundMakeSegimPropogate.Rd | 2 man/profoundMakeSigma.Rd | 2 man/profoundMakeSkyMap.Rd | 58 + man/profoundMakeStack.Rd | 26 man/profoundMultiBand.Rd | 57 + man/profoundPixelCorrelation.Rd | 13 man/profoundProFound.Rd | 127 ++-- man/profoundResample.Rd |only man/profoundSegimExtend.Rd |only man/profoundSegimFix.Rd |only man/profoundSegimGroup.Rd | 2 man/profoundSegimKeep.Rd | 6 man/profoundSegimMerge.Rd | 4 man/profoundSegimNear.Rd | 2 man/profoundSegimShare.Rd |only man/profoundSegimStats.Rd | 29 man/profoundSegimWarp.Rd | 6 man/profoundShareFlux.Rd |only man/profoundSkyEst.Rd | 2 man/profoundSkyEstLoc.Rd | 32 - man/profoundZapSegID.Rd |only man/water_cpp.Rd | 4 src/Array2.h |only src/IntpAkimaUniform2.h |only src/RcppExports.cpp | 99 +++ src/akima.cpp |only src/akima.h |only src/dilate.cpp |only src/point_in_poly.cpp |only src/skygrid.cpp |only src/water.h | 2 src/water_old.cpp | 13 vignettes/ProFound-Colour.Rmd | 2 vignettes/ProFound-Segim-Maps.Rmd | 2 vignettes/ProFound-Sky_Shenanigans.Rmd | 2 vignettes/ProFound-Source-Finding.Rmd | 2 vignettes/ProFound-TipsTricks.Rmd |only 89 files changed, 5110 insertions(+), 1973 deletions(-)
Title: 'ade4' Tcl/Tk Graphical User Interface
Description: A Tcl/Tk GUI for some basic functions in the 'ade4' package.
Author: Jean Thioulouse <jean.thioulouse@univ-lyon1.fr>, Stéphane Dray <stephane.dray@univ-lyon1.fr>, Aurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Maintainer: Aurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Diff between ade4TkGUI versions 0.3-0 dated 2019-09-17 and 0.3-1 dated 2020-12-03
DESCRIPTION | 14 +++++------ MD5 | 8 +++--- NAMESPACE | 2 - R/ordiClust.R | 71 ++++++++++++++++++++++++++++++---------------------------- inst/CITATION | 40 ++++++++++++++++++++++++-------- 5 files changed, 78 insertions(+), 57 deletions(-)
More information about SurrogateRegression at CRAN
Permanent link
Title: 'ggplot2' Based Plots with Statistical Details
Description: Extension of 'ggplot2', 'ggstatsplot' creates
graphics with details from statistical tests included in the plots
themselves. It provides an easier API to generate information-rich plots
for statistical analysis of continuous (violin plots, scatterplots,
histograms, dot plots, dot-and-whisker plots) or categorical (pie and
bar charts) data. Currently, it supports only the most common types of
statistical tests: parametric, nonparametric, robust, and Bayesian
versions of t-test/ANOVA, correlation analyses, contingency table
analysis, meta-analysis, and regression analyses.
Author: Indrajeet Patil [cre, aut, cph]
(<https://orcid.org/0000-0003-1995-6531>, @patilindrajeets)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between ggstatsplot versions 0.6.5 dated 2020-10-31 and 0.6.6 dated 2020-12-03
ggstatsplot-0.6.5/ggstatsplot/man/cat_counter.Rd |only ggstatsplot-0.6.5/ggstatsplot/man/cat_label_df.Rd |only ggstatsplot-0.6.5/ggstatsplot/man/grouped_proptest.Rd |only ggstatsplot-0.6.5/ggstatsplot/man/lm_effsize_standardizer.Rd |only ggstatsplot-0.6.5/ggstatsplot/tests/testthat/test-combine_plots2.R |only ggstatsplot-0.6.6/ggstatsplot/DESCRIPTION | 18 ggstatsplot-0.6.6/ggstatsplot/MD5 | 150 +- ggstatsplot-0.6.6/ggstatsplot/NAMESPACE | 33 ggstatsplot-0.6.6/ggstatsplot/NEWS.md | 532 ++++--- ggstatsplot-0.6.6/ggstatsplot/R/ggbarstats.R | 88 - ggstatsplot-0.6.6/ggstatsplot/R/ggbetweenstats.R | 95 - ggstatsplot-0.6.6/ggstatsplot/R/ggcoefstats.R | 191 +- ggstatsplot-0.6.6/ggstatsplot/R/ggcorrmat.R | 60 ggstatsplot-0.6.6/ggstatsplot/R/ggdotplotstats.R | 14 ggstatsplot-0.6.6/ggstatsplot/R/gghistostats.R | 14 ggstatsplot-0.6.6/ggstatsplot/R/ggpiestats.R | 101 - ggstatsplot-0.6.6/ggstatsplot/R/ggscatterstats.R | 8 ggstatsplot-0.6.6/ggstatsplot/R/ggwithinstats.R | 47 ggstatsplot-0.6.6/ggstatsplot/R/global_vars.R | 6 ggstatsplot-0.6.6/ggstatsplot/R/grouped_ggbarstats.R | 2 ggstatsplot-0.6.6/ggstatsplot/R/grouped_ggpiestats.R | 2 ggstatsplot-0.6.6/ggstatsplot/R/helpers_ggbetweenstats_graphics.R | 87 + ggstatsplot-0.6.6/ggstatsplot/R/helpers_ggcatstats_graphics.R | 217 +-- ggstatsplot-0.6.6/ggstatsplot/R/helpers_ggcoefstats_graphics.R | 159 -- ggstatsplot-0.6.6/ggstatsplot/R/helpers_messages.R | 13 ggstatsplot-0.6.6/ggstatsplot/R/helpers_theme_ggstatsplot.R | 8 ggstatsplot-0.6.6/ggstatsplot/R/reexports.R | 14 ggstatsplot-0.6.6/ggstatsplot/README.md | 98 - ggstatsplot-0.6.6/ggstatsplot/inst/WORDLIST | 10 ggstatsplot-0.6.6/ggstatsplot/inst/doc/additional.html | 242 --- ggstatsplot-0.6.6/ggstatsplot/man/figures/README-ggbarstats1-1.png |binary ggstatsplot-0.6.6/ggstatsplot/man/figures/README-ggbarstats2-1.png |binary ggstatsplot-0.6.6/ggstatsplot/man/figures/README-ggbetweenstats2-1.png |binary ggstatsplot-0.6.6/ggstatsplot/man/figures/README-ggbetweenstats3-1.png |binary ggstatsplot-0.6.6/ggstatsplot/man/figures/README-ggcoefstats1-1.png |binary ggstatsplot-0.6.6/ggstatsplot/man/figures/README-ggcoefstats2-1.png |binary ggstatsplot-0.6.6/ggstatsplot/man/figures/README-ggcorrmat1-1.png |binary ggstatsplot-0.6.6/ggstatsplot/man/figures/README-ggcorrmat2-1.png |binary ggstatsplot-0.6.6/ggstatsplot/man/figures/README-ggpiestats2-1.png |binary ggstatsplot-0.6.6/ggstatsplot/man/figures/README-ggscatterstats2-1.png |binary ggstatsplot-0.6.6/ggstatsplot/man/figures/README-ggscatterstats3-1.png |binary ggstatsplot-0.6.6/ggstatsplot/man/ggbarstats.Rd | 26 ggstatsplot-0.6.6/ggstatsplot/man/ggbetweenstats.Rd | 20 ggstatsplot-0.6.6/ggstatsplot/man/ggcoefstats.Rd | 30 ggstatsplot-0.6.6/ggstatsplot/man/ggcorrmat.Rd | 29 ggstatsplot-0.6.6/ggstatsplot/man/ggpiestats.Rd | 26 ggstatsplot-0.6.6/ggstatsplot/man/ggwithinstats.Rd | 32 ggstatsplot-0.6.6/ggstatsplot/man/grouped_ggbarstats.Rd | 26 ggstatsplot-0.6.6/ggstatsplot/man/grouped_ggbetweenstats.Rd | 20 ggstatsplot-0.6.6/ggstatsplot/man/grouped_ggcorrmat.Rd | 21 ggstatsplot-0.6.6/ggstatsplot/man/grouped_ggpiestats.Rd | 26 ggstatsplot-0.6.6/ggstatsplot/man/grouped_ggwithinstats.Rd | 20 ggstatsplot-0.6.6/ggstatsplot/man/mean_ggrepel.Rd | 6 ggstatsplot-0.6.6/ggstatsplot/man/reexports.Rd | 5 ggstatsplot-0.6.6/ggstatsplot/tests/testthat/Rplots.pdf |only ggstatsplot-0.6.6/ggstatsplot/tests/testthat/test-combine_plots.R | 82 + ggstatsplot-0.6.6/ggstatsplot/tests/testthat/test-ggbarstats.R | 74 - ggstatsplot-0.6.6/ggstatsplot/tests/testthat/test-ggbetweenstats.R | 15 ggstatsplot-0.6.6/ggstatsplot/tests/testthat/test-ggcoefstats.R | 240 +-- ggstatsplot-0.6.6/ggstatsplot/tests/testthat/test-ggcorrmat.R | 6 ggstatsplot-0.6.6/ggstatsplot/tests/testthat/test-ggpiestats.R | 139 -- ggstatsplot-0.6.6/ggstatsplot/tests/testthat/test-ggscatterstats.R | 6 ggstatsplot-0.6.6/ggstatsplot/tests/testthat/test-ggwithinstats.R | 50 ggstatsplot-0.6.6/ggstatsplot/tests/testthat/test-grouped_ggbarstats.R | 44 ggstatsplot-0.6.6/ggstatsplot/tests/testthat/test-grouped_ggpiestats.R | 29 ggstatsplot-0.6.6/ggstatsplot/tests/testthat/test-grouped_ggwithinstats.R | 2 ggstatsplot-0.6.6/ggstatsplot/tests/testthat/test-pairwise_ggsignif.R | 3 ggstatsplot-0.6.6/ggstatsplot/vignettes/web_only/faq.Rmd | 127 + ggstatsplot-0.6.6/ggstatsplot/vignettes/web_only/gallery.Rmd | 2 ggstatsplot-0.6.6/ggstatsplot/vignettes/web_only/ggbetweenstats.Rmd | 38 ggstatsplot-0.6.6/ggstatsplot/vignettes/web_only/ggcoefstats.Rmd | 686 +++++----- ggstatsplot-0.6.6/ggstatsplot/vignettes/web_only/ggcorrmat.Rmd | 44 ggstatsplot-0.6.6/ggstatsplot/vignettes/web_only/ggdotplotstats.Rmd | 14 ggstatsplot-0.6.6/ggstatsplot/vignettes/web_only/gghistostats.Rmd | 16 ggstatsplot-0.6.6/ggstatsplot/vignettes/web_only/ggpiestats.Rmd | 27 ggstatsplot-0.6.6/ggstatsplot/vignettes/web_only/ggscatterstats.Rmd | 34 ggstatsplot-0.6.6/ggstatsplot/vignettes/web_only/ggwithinstats.Rmd | 17 ggstatsplot-0.6.6/ggstatsplot/vignettes/web_only/purrr_examples.Rmd | 49 ggstatsplot-0.6.6/ggstatsplot/vignettes/web_only/session_info.Rmd | 6 79 files changed, 1912 insertions(+), 2334 deletions(-)
Title: A Tiny Contribution Table Generator Based on 'ggplot2'
Description: Contribution table for credit assignment based on 'ggplot2'.
This can improve the author contribution information in academic journals and personal CV.
Author: Shixiang Wang [aut, cre] (<https://orcid.org/0000-0001-9855-7357>)
Maintainer: Shixiang Wang <w_shixiang@163.com>
Diff between contribution versions 0.1.0 dated 2019-07-18 and 0.2.0 dated 2020-12-03
DESCRIPTION | 12 +-- MD5 | 36 +++++------ R/data.R | 2 R/generate.R | 14 ++++ R/pull.R | 24 ++++--- README.md | 40 ++++++------- build/vignette.rds |binary inst/doc/contribution.R | 2 inst/doc/contribution.Rmd | 4 - inst/doc/contribution.html | 94 +++++++++++++++++++++++++------ man/CRediT.Rd | 6 + man/demo.Rd | 4 - man/figures/README-unnamed-chunk-2-1.png |binary man/figures/README-unnamed-chunk-3-1.png |binary man/figures/README-unnamed-chunk-4-1.png |binary man/generate.Rd | 31 +++++++--- man/palette.Rd | 4 - man/pull_github.Rd | 13 +++- vignettes/contribution.Rmd | 4 - 19 files changed, 196 insertions(+), 94 deletions(-)
Title: Analyzing Data with Cellwise Outliers
Description: Tools for detecting cellwise outliers and robust methods to analyze
data which may contain them. Contains the implementation of the algorithms described in
Rousseeuw and Van den Bossche (2018) <doi:10.1080/00401706.2017.1340909> (open access)
Hubert et al. (2019) <doi:10.1080/00401706.2018.1562989> (open access),
Raymaekers and Rousseeuw (2019) <doi:10.1080/00401706.2019.1677270> (open access),
Raymaekers and Rousseeuw (2020) <arXiv:2005.07946> (open access),
Raymaekers and Rousseeuw (2020) <arXiv:1912.12446> (open access).
Examples can be found in the vignettes:
"DDC_examples", "MacroPCA_examples", "wrap_examples", "transfo_examples" and "DI_examples".
Author: Jakob Raymaekers [aut, cre],
Peter Rousseeuw [aut],
Wannes Van den Bossche [ctb],
Mia Hubert [ctb]
Maintainer: Jakob Raymaekers <jakob.raymaekers@kuleuven.be>
Diff between cellWise versions 2.2.2 dated 2020-11-26 and 2.2.3 dated 2020-12-03
cellWise-2.2.2/cellWise/data/dog_walker.rdata |only cellWise-2.2.2/cellWise/data/dposs.rdata |only cellWise-2.2.2/cellWise/data/glass.rdata |only cellWise-2.2.2/cellWise/data/mortality.rdata |only cellWise-2.2.2/cellWise/data/philips.rdata |only cellWise-2.2.2/cellWise/man/dog_walker.Rd |only cellWise-2.2.2/cellWise/man/dposs.Rd |only cellWise-2.2.2/cellWise/man/glass.Rd |only cellWise-2.2.2/cellWise/man/mortality.Rd |only cellWise-2.2.2/cellWise/man/philips.Rd |only cellWise-2.2.3/cellWise/DESCRIPTION | 14 +- cellWise-2.2.3/cellWise/MD5 | 81 ++++++++-------- cellWise-2.2.3/cellWise/NAMESPACE | 8 - cellWise-2.2.3/cellWise/R/cellHandler.R | 8 + cellWise-2.2.3/cellWise/R/generateData.R |only cellWise-2.2.3/cellWise/build/vignette.rds |binary cellWise-2.2.3/cellWise/data/data_VOC.rdata |only cellWise-2.2.3/cellWise/data/data_dogWalker.rdata |only cellWise-2.2.3/cellWise/data/data_dposs.rdata |only cellWise-2.2.3/cellWise/data/data_glass.rdata |only cellWise-2.2.3/cellWise/data/data_mortality.rdata |only cellWise-2.2.3/cellWise/data/data_philips.rdata |only cellWise-2.2.3/cellWise/data/datalist | 11 +- cellWise-2.2.3/cellWise/inst/doc/DDC_examples.R | 42 ++++---- cellWise-2.2.3/cellWise/inst/doc/DDC_examples.Rmd | 42 ++++---- cellWise-2.2.3/cellWise/inst/doc/DDC_examples.html | 42 ++++---- cellWise-2.2.3/cellWise/inst/doc/DI_examples.R |only cellWise-2.2.3/cellWise/inst/doc/DI_examples.Rmd |only cellWise-2.2.3/cellWise/inst/doc/DI_examples.html |only cellWise-2.2.3/cellWise/inst/doc/MacroPCA_examples.R | 20 +-- cellWise-2.2.3/cellWise/inst/doc/MacroPCA_examples.Rmd | 20 +-- cellWise-2.2.3/cellWise/inst/doc/MacroPCA_examples.html | 20 +-- cellWise-2.2.3/cellWise/inst/doc/transfo_examples.R | 14 +- cellWise-2.2.3/cellWise/inst/doc/transfo_examples.Rmd | 14 +- cellWise-2.2.3/cellWise/inst/doc/transfo_examples.html | 14 +- cellWise-2.2.3/cellWise/inst/doc/wrap_examples.R | 6 - cellWise-2.2.3/cellWise/inst/doc/wrap_examples.Rmd | 6 - cellWise-2.2.3/cellWise/inst/doc/wrap_examples.html | 6 - cellWise-2.2.3/cellWise/man/DI.Rd | 8 - cellWise-2.2.3/cellWise/man/cellHandler.Rd | 3 cellWise-2.2.3/cellWise/man/data_VOC.Rd |only cellWise-2.2.3/cellWise/man/data_dogWalker.Rd |only cellWise-2.2.3/cellWise/man/data_dposs.Rd |only cellWise-2.2.3/cellWise/man/data_glass.Rd |only cellWise-2.2.3/cellWise/man/data_mortality.Rd |only cellWise-2.2.3/cellWise/man/data_philips.Rd |only cellWise-2.2.3/cellWise/man/generateCorMat.Rd |only cellWise-2.2.3/cellWise/man/generateData.Rd |only cellWise-2.2.3/cellWise/man/outlierMap.Rd | 2 cellWise-2.2.3/cellWise/man/truncPC.Rd | 2 cellWise-2.2.3/cellWise/src/Main.cpp | 2 cellWise-2.2.3/cellWise/vignettes/DDC_examples.Rmd | 42 ++++---- cellWise-2.2.3/cellWise/vignettes/DI_examples.Rmd |only cellWise-2.2.3/cellWise/vignettes/MacroPCA_examples.Rmd | 20 +-- cellWise-2.2.3/cellWise/vignettes/transfo_examples.Rmd | 14 +- cellWise-2.2.3/cellWise/vignettes/wrap_examples.Rmd | 6 - 56 files changed, 243 insertions(+), 224 deletions(-)
Title: Cohort Data Analyses
Description: Functions to make lifetables and to calculate hazard function estimate using Poisson regression model with splines. Includes function to draw simple flowchart of cohort study. Function boxesLx() makes boxes of transition rates between states. It utilizes 'Epi' package 'Lexis' data.
Author: Jari Haukka [aut, cre]
Maintainer: Jari Haukka <jari.haukka@helsinki.fi>
Diff between cohorttools versions 0.1.3 dated 2020-10-16 and 0.1.4 dated 2020-12-03
DESCRIPTION | 8 +++--- MD5 | 12 ++++----- R/cohorttools.R | 69 ++++++++++++++++++++++++++++++++++++++++++---------- man/boxesLx.Rd | 32 ++++++++++++++++++++---- man/estim.hazard.Rd | 11 ++++++-- man/mkflowchart.Rd | 2 - man/mkratetable.Rd | 3 -- 7 files changed, 105 insertions(+), 32 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-07-09 0.1.1
2020-02-28 0.1.0
Title: Get Executing Script's Path, from 'RStudio', 'RGui', 'Rscript'
(Command-Line / / Terminal), and when using 'source'
Description: Determine the full path of the executing script. Works when running
a line or selection from an open R script in 'RStudio' and 'RGui', when using
'source' and 'sys.source' and 'debugSource' ('RStudio' exclusive), and when
running 'Rscript' from the command-line / / terminal.
Author: Andrew Simmons
Maintainer: Andrew Simmons <akwsimmo@gmail.com>
Diff between this.path versions 0.1.0 dated 2020-11-11 and 0.2.0 dated 2020-12-03
DESCRIPTION | 14 - MD5 | 10 - R/this.path.R | 300 ++++++++++++++++++++++++--------- build/partial.rdb |binary man/this.path-package.Rd | 2 man/this.path.Rd | 422 +++++++++++++++++++++++++++++++++-------------- 6 files changed, 535 insertions(+), 213 deletions(-)
More information about sarp.snowprofile.alignment at CRAN
Permanent link
Title: Interface to the Global 'Biodiversity' Information Facility API
Description: A programmatic interface to the Web Service methods
provided by the Global Biodiversity Information Facility ('GBIF';
<https://www.gbif.org/developer/summary>). 'GBIF' is a database
of species occurrence records from sources all over the globe.
'rgbif' includes functions for searching for taxonomic names,
retrieving information on data providers, getting species occurrence
records, getting counts of occurrence records, and using the 'GBIF'
tile map service to make 'rasters' summarizing huge amounts of data.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
Damiano Oldoni [aut] (<https://orcid.org/0000-0003-3445-7562>),
Vijay Barve [ctb] (<https://orcid.org/0000-0002-4852-2567>),
Peter Desmet [ctb] (<https://orcid.org/0000-0002-8442-8025>),
Laurens Geffert [ctb],
Dan Mcglinn [ctb] (<https://orcid.org/0000-0003-2359-3526>),
Karthik Ram [ctb] (<https://orcid.org/0000-0002-0233-1757>),
rOpenSci [fnd] (https://ropensci.org/)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rgbif versions 3.3.0 dated 2020-09-08 and 3.4.0 dated 2020-12-03
rgbif-3.3.0/rgbif/README.md |only rgbif-3.3.0/rgbif/build |only rgbif-3.3.0/rgbif/inst/doc |only rgbif-3.3.0/rgbif/man/download_predicates.Rd |only rgbif-3.3.0/rgbif/vignettes |only rgbif-3.4.0/rgbif/DESCRIPTION | 11 rgbif-3.4.0/rgbif/MD5 | 70 +-- rgbif-3.4.0/rgbif/NEWS.md | 17 rgbif-3.4.0/rgbif/R/count_facet.r | 26 - rgbif-3.4.0/rgbif/R/download_predicate_dsl.R | 24 - rgbif-3.4.0/rgbif/R/gbif_issues.R | 22 - rgbif-3.4.0/rgbif/R/many-values.R | 4 rgbif-3.4.0/rgbif/R/occ_count.r | 93 ++-- rgbif-3.4.0/rgbif/R/occ_data.R | 10 rgbif-3.4.0/rgbif/R/occ_download.R | 4 rgbif-3.4.0/rgbif/R/occ_download_get.r | 3 rgbif-3.4.0/rgbif/R/occ_download_meta.R | 37 + rgbif-3.4.0/rgbif/R/occ_search.r | 7 rgbif-3.4.0/rgbif/R/rgbif-package.r | 11 rgbif-3.4.0/rgbif/R/zzz.r | 11 rgbif-3.4.0/rgbif/man/count_facet.Rd | 9 rgbif-3.4.0/rgbif/man/download_predicate_dsl.Rd |only rgbif-3.4.0/rgbif/man/many-values.Rd | 4 rgbif-3.4.0/rgbif/man/occ_count.Rd | 8 rgbif-3.4.0/rgbif/man/occ_data.Rd | 212 +++++++--- rgbif-3.4.0/rgbif/man/occ_download.Rd | 4 rgbif-3.4.0/rgbif/man/occ_search.Rd | 209 +++++++-- rgbif-3.4.0/rgbif/man/rgbif-defunct.Rd | 3 rgbif-3.4.0/rgbif/man/rgbif-package.Rd | 8 rgbif-3.4.0/rgbif/tests/fixtures/occ_download_meta_na_results.yml |only rgbif-3.4.0/rgbif/tests/fixtures/occ_download_meta_with_results.yml |only rgbif-3.4.0/rgbif/tests/testthat/test-count_facet.r | 14 rgbif-3.4.0/rgbif/tests/testthat/test-occ_download_meta.R | 23 + 33 files changed, 550 insertions(+), 294 deletions(-)
Title: A Toolbox for Public Health and Epidemiology
Description: A toolbox for making R functions and capabilities more
accessible to students and professionals from Epidemiology and
Public Health related disciplines. Includes a function to report
coefficients and confidence intervals from models using robust
standard errors (when available), functions that expand 'ggplot2'
plots and functions relevant for introductory papers in Epidemiology
or Public Health. Please note that use of the
provided data sets is for educational purposes only.
Author: Josie Athens [aut, cre],
Frank Harell [ctb],
John Fox [ctb],
R-Core [ctb]
Maintainer: Josie Athens <josie.athens@otago.ac.nz>
Diff between pubh versions 1.1.18 dated 2020-11-10 and 1.1.19 dated 2020-12-03
DESCRIPTION | 10 MD5 | 75 ++- R/data.R | 8 R/descriptive_functions.R | 4 R/display_functions.R | 103 ++++- R/epi_functions.R | 10 R/misc_functions.R | 6 R/plot_functions.R | 24 - README.md | 2 build/vignette.rds |binary inst/doc/introduction.R | 10 inst/doc/introduction.Rmd | 14 inst/doc/introduction.html | 342 +++++++++--------- inst/doc/regression.R |only inst/doc/regression.Rmd |only inst/doc/regression.html |only inst/rmarkdown/templates/report/skeleton/skeleton.Rmd | 1 man/Hodgkin.Rd | 4 man/Rothman.Rd | 2 man/Thall.Rd | 2 man/axis_labs.Rd | 2 man/bar_error.Rd | 4 man/box_plot.Rd | 2 man/coef_det.Rd | 2 man/contingency.Rd | 2 man/cross_tab.Rd | 2 man/estat.Rd | 2 man/gen_bst_df.Rd | 4 man/get_r2.Rd |only man/gf_star.Rd | 2 man/glm_coef.Rd | 11 man/hist_norm.Rd | 4 man/mhor.Rd | 6 man/model_labels.Rd | 4 man/odds_trend.Rd | 2 man/predict_inv.Rd | 2 man/qq_plot.Rd | 2 man/strip_error.Rd | 4 man/theme_pubh.Rd | 2 vignettes/introduction.Rmd | 14 vignettes/regression.Rmd |only 41 files changed, 410 insertions(+), 280 deletions(-)
Title: User-Friendly R Package for Supervised Machine Learning
Pipelines
Description: An interface to build machine learning models for classification
and regression problems. 'mikropml' implements the ML pipeline described
by Topçuoğlu et al. (2020) <doi:10.1128/mBio.00434-20> with reasonable
default options for data preprocessing, hyperparameter tuning,
cross-validation, testing, model evaluation, and interpretation steps.
See the website <http://www.schlosslab.org/mikropml/> for more information,
documentation, and examples.
Author: Begüm Topçuoğlu [aut] (<https://orcid.org/0000-0003-3140-537X>),
Zena Lapp [aut] (<https://orcid.org/0000-0003-4674-2176>),
Kelly Sovacool [aut, cre] (<https://orcid.org/0000-0003-3283-829X>),
Evan Snitkin [aut] (<https://orcid.org/0000-0001-8409-278X>),
Jenna Wiens [aut] (<https://orcid.org/0000-0002-1057-7722>),
Patrick Schloss [aut] (<https://orcid.org/0000-0002-6935-4275>),
Nick Lesniak [ctb] (<https://orcid.org/0000-0001-9359-5194>)
Maintainer: Kelly Sovacool <sovacool@umich.edu>
Diff between mikropml versions 0.0.1 dated 2020-11-23 and 0.0.2 dated 2020-12-03
DESCRIPTION | 12 +-- MD5 | 54 ++++++++--------- NAMESPACE | 7 ++ NEWS.md | 43 ++++++++------ R/corr_feats.R | 20 ++++-- R/feature_importance.R | 95 +++++++++++++++++-------------- R/performance_metrics.R | 2 R/utils.R | 13 ++++ README.md | 40 ++++++++++--- data/otu_mini_bin_results_rf.rda |binary data/otu_mini_cont_results_glmnet.rda |binary inst/doc/introduction.Rmd | 11 +-- inst/doc/introduction.html | 30 ++++----- inst/doc/paper.R | 1 inst/doc/paper.Rmd | 39 ++++++++---- inst/doc/paper.html | 14 ++-- man/get_corr_feats.Rd | 7 +- man/get_feature_importance.Rd | 12 ++- man/get_performance_tbl.Rd | 2 man/preprocess_data.Rd | 3 tests/testthat.R | 1 tests/testthat/test-corr_feats.R | 3 tests/testthat/test-feature_importance.R | 80 +++++++++++++------------- tests/testthat/test-preprocess_data.R | 3 tests/testthat/test-run_ml.R | 1 vignettes/introduction.Rmd | 11 +-- vignettes/paper.Rmd | 39 ++++++++---- vignettes/paper.bib | 37 ++++++++++-- 28 files changed, 366 insertions(+), 214 deletions(-)
Title: Bayesian Gaussian Graphical Models
Description: Fit Bayesian Gaussian graphical models. The methods are separated into
two Bayesian approaches for inference: hypothesis testing and estimation. There are
extensions for confirmatory hypothesis testing, comparing Gaussian graphical models,
and node wise predictability. These methods were recently introduced in the Gaussian
graphical model literature, including
Williams (2019) <doi:10.31234/osf.io/x8dpr>,
Williams and Mulder (2019) <doi:10.31234/osf.io/ypxd8>,
Williams, Rast, Pericchi, and Mulder (2019) <doi:10.31234/osf.io/yt386>.
Author: Donald Williams [aut, cre],
Joris Mulder [aut]
Maintainer: Donald Williams <drwwilliams@ucdavis.edu>
Diff between BGGM versions 2.0.2 dated 2020-07-24 and 2.0.3 dated 2020-12-03
DESCRIPTION | 10 MD5 | 66 - NAMESPACE | 4 NEWS.md | 94 +- R/RcppExports.R | 28 R/bma_posterior.R |only R/constrained_post.R |only R/datasets.R | 1806 ++++++++++++++++++++--------------------- R/estimate.R | 1643 ++++++++++++++++++------------------- R/explore.default.R | 8 R/ggm_search.R |only R/helpers.R | 9 R/precision.R |only R/predictability.R | 3 R/print_BGGM.R | 27 R/select.VAR_estimate.R | 286 +++--- R/var_estimate.R | 1000 +++++++++++----------- build/partial.rdb |binary build/vignette.rds |binary inst/REFERENCES.bib | 1361 +++++++++++++++--------------- inst/doc/control.html | 50 + inst/doc/hyp_3_ways.html | 50 + inst/doc/in_tandem.html | 64 + inst/doc/installation.html | 64 + inst/doc/mcmc_diagnostics.html | 188 ++-- inst/doc/netplot.html | 242 +++-- inst/doc/netstat_custom.html | 370 ++++---- inst/doc/ppc_custom.html | 454 +++++----- inst/doc/predictability.html | 254 +++-- inst/doc/test_sum.html | 50 + inst/doc/var_model.html | 50 + man/bma_posterior.Rd |only man/constrained_posterior.Rd |only man/estimate.Rd | 4 man/ggm_search.Rd |only man/precision.Rd |only src/RcppExports.cpp | 109 ++ src/bggm_fast.cpp | 364 ++++++++ 38 files changed, 4925 insertions(+), 3733 deletions(-)
Title: Functions for Behavioral Science Researchers
Description: Miscellaneous functions designed to facilitate and
simplify analyses of experimental data. Examples include a function
that plots sample means of groups in a factorial experimental design,
a function that conducts robust regressions with bootstrapped samples,
and a function that conducts two-way analysis of variance.
Author: Jin Kim [aut, cre] (<https://orcid.org/0000-0002-5013-3958>)
Maintainer: Jin Kim <jin.m.kim@yale.edu>
Diff between kim versions 0.1.11 dated 2020-11-25 and 0.2.20 dated 2020-12-03
DESCRIPTION | 13 - MD5 | 95 ++++++++----- NAMESPACE | 12 + NEWS.md | 3 R/barplot_for_counts.R | 38 +++-- R/chi_square_test_pairwise.R |only R/coefficient_of_variation.R | 3 R/cohen_d.R |only R/cohen_d_from_cohen_textbook.R | 41 ++++- R/comma_sep_string_to_numbers.R | 6 R/compare_groups.R |only R/cum_percent_plot.R |only R/desc_stats.R | 11 - R/desc_stats_by_group.R | 55 +++++-- R/histogram_by_group.R | 89 ++++++++---- R/matrix_prep_dt.R | 6 R/mediation_analysis.R | 112 ++++++++++----- R/multiple_regression.R | 22 +-- R/onAttach.R |only R/parallel_analysis.R |only R/percentile_rank.R | 4 R/plot_group_means.R | 73 ++++++---- R/population_variance.R |only R/prep.R |only R/pretty_round_p_value.R | 36 +++- R/proportion_of_values_in_vector.R | 15 +- R/robust_regression.R | 28 ++- R/scatterplot.R | 78 ++++++---- R/se_of_mean.R | 3 R/setup_r_env.R |only R/t_test_pairwise.R |only R/tabulate_vector.R | 245 ++++++++++++++++++---------------- R/two_way_anova.R | 92 ++++++------ R/update_kim.R |only README.md | 4 inst/CITATION | 4 man/barplot_for_counts.Rd | 9 - man/chi_square_test_pairwise.Rd |only man/cohen_d.Rd |only man/cohen_d_from_cohen_textbook.Rd | 21 ++ man/compare_groups.Rd |only man/cum_percent_plot.Rd |only man/desc_stats_by_group.Rd | 12 + man/histogram_by_group.Rd | 10 - man/matrix_prep_dt.Rd | 6 man/mediation_analysis.Rd | 107 +++++++------- man/parallel_analysis.Rd |only man/plot_group_means.Rd | 12 + man/population_variance.Rd |only man/prep.Rd |only man/pretty_round_p_value.Rd | 6 man/proportion_of_values_in_vector.Rd | 9 - man/robust_regression.Rd | 6 man/scatterplot.Rd | 16 +- man/setup_r_env.Rd |only man/t_test_pairwise.Rd |only man/tabulate_vector.Rd | 18 +- man/two_way_anova.Rd | 47 +++--- man/update_kim.Rd |only 59 files changed, 851 insertions(+), 516 deletions(-)
Title: Add Gate Information to Your Tibble
Description: It interactively or programmatically label points within custom gates on two dimensions.
The information is added to your tibble. It is based on the package 'gatepoints' from Wajid Jawaid.
The benefits are (i) in interactive mode you can draw your gates on extensive 'ggplot'-like scatter plots;
(ii) you can draw multiple gates; and (iii) you can save your gates and apply the programmatically.
Author: Stefano Mangiola [aut, cre],
Wajid Jawaid [ctb]
Maintainer: Stefano Mangiola <mangiolastefano@gmail.com>
Diff between tidygate versions 0.2.8 dated 2020-09-26 and 0.3.2 dated 2020-12-03
tidygate-0.2.8/tidygate/R/functions.R |only tidygate-0.3.2/tidygate/DESCRIPTION | 6 tidygate-0.3.2/tidygate/MD5 | 47 + tidygate-0.3.2/tidygate/NAMESPACE | 6 tidygate-0.3.2/tidygate/R/functions_OLD.R |only tidygate-0.3.2/tidygate/R/functions_chr_int.R |only tidygate-0.3.2/tidygate/R/methods.R | 366 +++++++-------- tidygate-0.3.2/tidygate/R/methods_OLD.R |only tidygate-0.3.2/tidygate/R/utilities.R |only tidygate-0.3.2/tidygate/README.md | 169 +++++- tidygate-0.3.2/tidygate/build/tidygate.pdf |binary tidygate-0.3.2/tidygate/inst/doc/introdution.R | 24 tidygate-0.3.2/tidygate/inst/doc/introdution.Rmd | 161 ++++-- tidygate-0.3.2/tidygate/inst/doc/introdution.html | 101 ++++ tidygate-0.3.2/tidygate/man/add_attr.Rd | 2 tidygate-0.3.2/tidygate/man/figures |only tidygate-0.3.2/tidygate/man/gate-methods.Rd | 5 tidygate-0.3.2/tidygate/man/gate_chr-methods.Rd |only tidygate-0.3.2/tidygate/man/gate_chr.numeric.Rd |only tidygate-0.3.2/tidygate/man/gate_int.numeric.Rd |only tidygate-0.3.2/tidygate/man/gate_interactive.Rd | 2 tidygate-0.3.2/tidygate/man/gate_interactive_chr_int.Rd |only tidygate-0.3.2/tidygate/man/gate_programmatic.Rd | 2 tidygate-0.3.2/tidygate/man/gate_programmatic_chr_int.Rd |only tidygate-0.3.2/tidygate/tests/testthat/test-methods.R | 127 +++-- tidygate-0.3.2/tidygate/vignettes/introdution.Rmd | 161 ++++-- 26 files changed, 756 insertions(+), 423 deletions(-)