Title: Efficient Leave-One-Out Cross-Validation and WAIC for Bayesian
Models
Description: Efficient approximate leave-one-out cross-validation (LOO)
for Bayesian models fit using Markov chain Monte Carlo, as
described in Vehtari, Gelman, and Gabry (2017)
<doi:10.1007/s11222-016-9696-4>.
The approximation uses Pareto smoothed importance sampling (PSIS),
a new procedure for regularizing importance weights.
As a byproduct of the calculations, we also obtain approximate
standard errors for estimated predictive errors and for the comparison
of predictive errors between models. The package also provides methods
for using stacking and other model weighting techniques to average
Bayesian predictive distributions.
Author: Aki Vehtari [aut],
Jonah Gabry [cre, aut],
Mans Magnusson [aut],
Yuling Yao [aut],
Paul-Christian Bürkner [aut],
Topi Paananen [aut],
Andrew Gelman [aut],
Ben Goodrich [ctb],
Juho Piironen [ctb],
Bruno Nicenboim [ctb]
Maintainer: Jonah Gabry <jsg2201@columbia.edu>
Diff between loo versions 2.3.1 dated 2020-07-14 and 2.4.0 dated 2020-12-04
loo-2.3.1/loo/inst/doc/loo2-example.R |only loo-2.3.1/loo/inst/doc/loo2-example.Rmd |only loo-2.3.1/loo/inst/doc/loo2-example.html |only loo-2.3.1/loo/inst/doc/loo2-large-data.R |only loo-2.3.1/loo/inst/doc/loo2-large-data.Rmd |only loo-2.3.1/loo/inst/doc/loo2-large-data.html |only loo-2.3.1/loo/inst/doc/loo2-lfo.R |only loo-2.3.1/loo/inst/doc/loo2-lfo.Rmd |only loo-2.3.1/loo/inst/doc/loo2-lfo.html |only loo-2.3.1/loo/inst/doc/loo2-moment-matching.R |only loo-2.3.1/loo/inst/doc/loo2-moment-matching.Rmd |only loo-2.3.1/loo/inst/doc/loo2-moment-matching.html |only loo-2.3.1/loo/inst/doc/loo2-non-factorized.R |only loo-2.3.1/loo/inst/doc/loo2-non-factorized.Rmd |only loo-2.3.1/loo/inst/doc/loo2-non-factorized.html |only loo-2.3.1/loo/inst/doc/loo2-weights.R |only loo-2.3.1/loo/inst/doc/loo2-weights.Rmd |only loo-2.3.1/loo/inst/doc/loo2-weights.html |only loo-2.3.1/loo/inst/doc/loo2-with-rstan.R |only loo-2.3.1/loo/inst/doc/loo2-with-rstan.Rmd |only loo-2.3.1/loo/inst/doc/loo2-with-rstan.html |only loo-2.3.1/loo/vignettes/loo2-example.Rmd |only loo-2.3.1/loo/vignettes/loo2-large-data.Rmd |only loo-2.3.1/loo/vignettes/loo2-lfo.Rmd |only loo-2.3.1/loo/vignettes/loo2-moment-matching.Rmd |only loo-2.3.1/loo/vignettes/loo2-non-factorized.Rmd |only loo-2.3.1/loo/vignettes/loo2-weights.Rmd |only loo-2.3.1/loo/vignettes/loo2-with-rstan.Rmd |only loo-2.4.0/loo/DESCRIPTION | 16 +- loo-2.4.0/loo/MD5 | 115 ++++++++-------- loo-2.4.0/loo/NAMESPACE | 3 loo-2.4.0/loo/NEWS.md | 65 ++++++--- loo-2.4.0/loo/R/effective_sample_sizes.R | 15 +- loo-2.4.0/loo/R/elpd.R |only loo-2.4.0/loo/R/extract_log_lik.R | 4 loo-2.4.0/loo/R/loo.R | 17 -- loo-2.4.0/loo/R/split_moment_matching.R | 19 ++ loo-2.4.0/loo/build/vignette.rds |binary loo-2.4.0/loo/inst/CITATION | 2 loo-2.4.0/loo/inst/doc/elpd.R |only loo-2.4.0/loo/inst/doc/elpd.Rmd |only loo-2.4.0/loo/inst/doc/elpd.html |only loo-2.4.0/loo/inst/doc/large-data.R |only loo-2.4.0/loo/inst/doc/large-data.Rmd |only loo-2.4.0/loo/inst/doc/large-data.html |only loo-2.4.0/loo/inst/doc/lfo.R |only loo-2.4.0/loo/inst/doc/lfo.Rmd |only loo-2.4.0/loo/inst/doc/lfo.html |only loo-2.4.0/loo/inst/doc/loo-package.R |only loo-2.4.0/loo/inst/doc/loo-package.Rmd |only loo-2.4.0/loo/inst/doc/loo-package.html |only loo-2.4.0/loo/inst/doc/moment-matching.R |only loo-2.4.0/loo/inst/doc/moment-matching.Rmd |only loo-2.4.0/loo/inst/doc/moment-matching.html |only loo-2.4.0/loo/inst/doc/non-factorized.R |only loo-2.4.0/loo/inst/doc/non-factorized.Rmd |only loo-2.4.0/loo/inst/doc/non-factorized.html |only loo-2.4.0/loo/inst/doc/weights.R |only loo-2.4.0/loo/inst/doc/weights.Rmd |only loo-2.4.0/loo/inst/doc/weights.html |only loo-2.4.0/loo/inst/doc/writing-stan-programs.R |only loo-2.4.0/loo/inst/doc/writing-stan-programs.Rmd |only loo-2.4.0/loo/inst/doc/writing-stan-programs.html |only loo-2.4.0/loo/man/compare.Rd | 4 loo-2.4.0/loo/man/elpd.Rd |only loo-2.4.0/loo/man/extract_log_lik.Rd | 4 loo-2.4.0/loo/man/loo-glossary.Rd | 4 loo-2.4.0/loo/man/loo-package.Rd | 4 loo-2.4.0/loo/man/loo.Rd | 21 -- loo-2.4.0/loo/man/loo_compare.Rd | 4 loo-2.4.0/loo/man/loo_model_weights.Rd | 4 loo-2.4.0/loo/man/loo_moment_match.Rd | 2 loo-2.4.0/loo/man/loo_moment_match_split.Rd | 2 loo-2.4.0/loo/man/pareto-k-diagnostic.Rd | 4 loo-2.4.0/loo/man/psis.Rd | 4 loo-2.4.0/loo/man/psis_approximate_posterior.Rd | 4 loo-2.4.0/loo/man/psislw.Rd | 4 loo-2.4.0/loo/man/relative_eff.Rd | 6 loo-2.4.0/loo/man/sis.Rd | 4 loo-2.4.0/loo/man/waic.Rd | 4 loo-2.4.0/loo/tests/testthat/reference-results/elpd.rds |only loo-2.4.0/loo/tests/testthat/test_loo_and_waic.R | 32 ++++ loo-2.4.0/loo/vignettes/elpd.Rmd |only loo-2.4.0/loo/vignettes/large-data.Rmd |only loo-2.4.0/loo/vignettes/lfo.Rmd |only loo-2.4.0/loo/vignettes/loo-package.Rmd |only loo-2.4.0/loo/vignettes/moment-matching.Rmd |only loo-2.4.0/loo/vignettes/non-factorized.Rmd |only loo-2.4.0/loo/vignettes/weights.Rmd |only loo-2.4.0/loo/vignettes/writing-stan-programs.Rmd |only 90 files changed, 214 insertions(+), 153 deletions(-)
Title: Moment Condition Based Estimation of Linear Dynamic Panel Data
Models
Description: Linear dynamic panel data modeling based on linear and
nonlinear moment conditions as proposed by
Holtz-Eakin, Newey, and Rosen (1988) <doi:10.2307/1913103>,
Ahn and Schmidt (1995) <doi:10.1016/0304-4076(94)01641-C>,
and Arellano and Bover (1995) <doi:10.1016/0304-4076(94)01642-D>.
Estimation of the model parameters relies on numerical optimization
and the computation of closed form solutions. For inference and specification
testing, Windmeijer (2005) <doi:10.1016/j.jeconom.2004.02.005>
corrected standard errors, serial correlation tests, tests for overidentification,
and Wald tests are available.
Author: Markus Fritsch [aut, cre],
Joachim Schnurbus [aut],
Andrew Adrian Yu Pua [aut]
Maintainer: Markus Fritsch <Markus.Fritsch@uni-Passau.de>
Diff between pdynmc versions 0.9.2 dated 2020-09-16 and 0.9.3 dated 2020-12-04
pdynmc-0.9.2/pdynmc/inst/tests/arguments_for_StepByStepFunctionChecks.R |only pdynmc-0.9.2/pdynmc/inst/tests/check2.R |only pdynmc-0.9.2/pdynmc/inst/tests/checkMcDiff.R |only pdynmc-0.9.2/pdynmc/inst/tests/checkMcLev.R |only pdynmc-0.9.3/pdynmc/DESCRIPTION | 11 pdynmc-0.9.3/pdynmc/MD5 | 66 pdynmc-0.9.3/pdynmc/NAMESPACE | 122 pdynmc-0.9.3/pdynmc/NEWS.md | 22 pdynmc-0.9.3/pdynmc/R/pdynmc_estFct.R | 267 pdynmc-0.9.3/pdynmc/R/pdynmc_exploratory.R | 106 pdynmc-0.9.3/pdynmc/R/pdynmc_fitMethods.R | 212 pdynmc-0.9.3/pdynmc/R/pdynmc_furtherHelperFcts.R | 128 pdynmc-0.9.3/pdynmc/R/pdynmc_instMatFcts.R | 207 pdynmc-0.9.3/pdynmc/R/pdynmc_specTestFcst.R | 8 pdynmc-0.9.3/pdynmc/README.md | 6 pdynmc-0.9.3/pdynmc/build/partial.rdb |binary pdynmc-0.9.3/pdynmc/build/vignette.rds |binary pdynmc-0.9.3/pdynmc/inst/REFERENCES.bib | 2863 +++++----- pdynmc-0.9.3/pdynmc/inst/doc/pdynmc.pdf |binary pdynmc-0.9.3/pdynmc/inst/tests/CopyOfcheck_incDemo.R |only pdynmc-0.9.3/pdynmc/inst/tests/arguments_for_StepByStepFunctionChecksABdata.R | 94 pdynmc-0.9.3/pdynmc/inst/tests/arguments_for_StepByStepFunctionChecksMG.R | 101 pdynmc-0.9.3/pdynmc/inst/tests/checkAB_McDiff.R |only pdynmc-0.9.3/pdynmc/inst/tests/checkAB_McDiffLev.R |only pdynmc-0.9.3/pdynmc/inst/tests/checkAB_McDiffNL.R |only pdynmc-0.9.3/pdynmc/inst/tests/checkAB_McLev.R |only pdynmc-0.9.3/pdynmc/inst/tests/checkAB_codeExamples.R |only pdynmc-0.9.3/pdynmc/inst/tests/checkBCmcDiff.R | 34 pdynmc-0.9.3/pdynmc/inst/tests/checkBCmcDiffAndLev.R | 29 pdynmc-0.9.3/pdynmc/inst/tests/checkBCmcDiffAndNL.R | 35 pdynmc-0.9.3/pdynmc/inst/tests/checkBCmcLev.R | 37 pdynmc-0.9.3/pdynmc/inst/tests/checkMG.R | 89 pdynmc-0.9.3/pdynmc/inst/tests/check_incDemo.R |only pdynmc-0.9.3/pdynmc/man/pdynmc.Rd | 30 pdynmc-0.9.3/pdynmc/man/plot.pdynmc.Rd | 57 pdynmc-0.9.3/pdynmc/man/strucUPD.plot.Rd | 4 pdynmc-0.9.3/pdynmc/tests |only 37 files changed, 2545 insertions(+), 1983 deletions(-)
Title: Probabilistic Supervised Learning for 'mlr3'
Description: Provides extensions for probabilistic supervised
learning for 'mlr3'. This includes extending the regression task to
probabilistic and interval regression, adding a survival task, and
other specialized models, predictions, and measures. mlr3extralearners is available
from <https://github.com/mlr-org/mlr3extralearners>.
Author: Raphael Sonabend [aut, cre] (<https://orcid.org/0000-0001-9225-4654>),
Franz Kiraly [aut],
Michel Lang [aut] (<https://orcid.org/0000-0001-9754-0393>),
Nurul Ain Toha [ctb],
Andreas Bender [ctb] (<https://orcid.org/0000-0001-5628-8611>)
Maintainer: Raphael Sonabend <raphael.sonabend.15@ucl.ac.uk>
Diff between mlr3proba versions 0.2.5 dated 2020-11-18 and 0.2.6 dated 2020-12-04
DESCRIPTION | 6 +- MD5 | 12 ++--- NEWS.md | 4 + build/partial.rdb |binary inst/testthat/helper_autotest.R | 51 +++++++++++++------------ tests/testthat/Rplots.pdf |binary tests/testthat/test_mlr_learners_surv_kaplan.R | 3 - 7 files changed, 42 insertions(+), 34 deletions(-)
Title: Hospital Data Analysis Workflow Tools
Description: Hospital data analysis workflow tools, modeling, and automations. This library
provides many useful tools to review common administrative hospital data. Some
of these include average length of stay, readmission rates, average net pay
amounts by service lines just to name a few. The aim is to provide a simple
and consistent verb framework that takes the guesswork out of everything.
Author: Steven Sanderson [aut, cre],
Steven Sanderson [cph]
Maintainer: Steven Sanderson <spsanderson@gmail.com>
Diff between healthyR versions 0.1.0 dated 2020-12-03 and 0.1.1 dated 2020-12-04
DESCRIPTION | 6 MD5 | 16 +- NEWS.md | 4 README.md | 5 inst/doc/getting-started.R | 10 - inst/doc/getting-started.Rmd | 200 ++++++++++++++++----------------- inst/doc/getting-started.html | 42 +++--- man/figures/README-gartner_chart-1.png |binary vignettes/getting-started.Rmd | 200 ++++++++++++++++----------------- 9 files changed, 240 insertions(+), 243 deletions(-)
Title: Read, Write, Create and Explore Chess Games
Description: This is an opinionated wrapper around the
python-chess package. It allows users to read and write PGN files as
well as create and explore game trees such as the ones seen in chess
books.
Author: C. Lente [aut, cre]
Maintainer: C. Lente <clente@curso-r.com>
Diff between chess versions 1.0.0 dated 2020-11-25 and 1.0.1 dated 2020-12-04
chess-1.0.0/chess/tests/testthat/_snaps/visual |only chess-1.0.0/chess/tests/testthat/_snaps/visual.md |only chess-1.0.0/chess/tests/testthat/_snaps/visual.new.md |only chess-1.0.1/chess/DESCRIPTION | 10 - chess-1.0.1/chess/MD5 | 44 +++-- chess-1.0.1/chess/NEWS.md |only chess-1.0.1/chess/R/game.R | 5 chess-1.0.1/chess/R/move.R | 27 --- chess-1.0.1/chess/R/pgn.R | 9 + chess-1.0.1/chess/R/plot.R | 11 - chess-1.0.1/chess/R/python.R | 11 + chess-1.0.1/chess/README.md | 103 +++++++------ chess-1.0.1/chess/build/vignette.rds |binary chess-1.0.1/chess/inst/doc/games.R |only chess-1.0.1/chess/inst/doc/games.Rmd |only chess-1.0.1/chess/inst/doc/games.html |only chess-1.0.1/chess/inst/harmon.pgn |only chess-1.0.1/chess/man/figures/README-unnamed-chunk-4-1.png |binary chess-1.0.1/chess/man/game.Rd | 6 chess-1.0.1/chess/man/install_chess.Rd | 4 chess-1.0.1/chess/man/move.Rd | 28 --- chess-1.0.1/chess/man/read_game.Rd | 7 chess-1.0.1/chess/tests/testthat/_snaps/io |only chess-1.0.1/chess/tests/testthat/_snaps/io.md |only chess-1.0.1/chess/tests/testthat/test-game.R | 1 chess-1.0.1/chess/tests/testthat/test-io.R | 22 ++ chess-1.0.1/chess/vignettes/games.Rmd |only 27 files changed, 138 insertions(+), 150 deletions(-)
Title: Methods and Measures for Semantic Network Analysis
Description: Implements several functions for the analysis of semantic networks including different network estimation algorithms, partial node bootstrapping (Kenett, Anaki, & Faust, 2014 <doi:10.3389/fnhum.2014.00407>), random walk simulation (Kenett & Austerweil, 2016 <http://alab.psych.wisc.edu/papers/files/Kenett16CreativityRW.pdf>), and a function to compute global network measures. Significance tests and plotting features are also implemented.
Author: Alexander P. Christensen [aut, cre]
(<https://orcid.org/0000-0002-9798-7037>),
Yoed N. Kenett [aut, ctb] (<https://orcid.org/0000-0003-3872-7689>)
Maintainer: Alexander P. Christensen <alexpaulchristensen@gmail.com>
Diff between SemNeT versions 1.4.0 dated 2020-09-26 and 1.4.1 dated 2020-12-04
DESCRIPTION | 8 - MD5 | 35 ++--- NAMESPACE | 2 NEWS | 21 +++ R/NRW.R | 72 +++++++++-- R/PF.R | 7 - R/bootSemNeT.R | 50 +++++-- R/response.analysis.R |only R/sim.fluency.R | 1 R/test.bootSemNeT.R | 10 + R/utils-SemNeT.R | 119 ++++++++++++++++-- R/utils-SemNeTShiny.R | 54 +++++--- R/zzz.R | 3 data/open.clean.RData |binary inst/Shiny/server.R | 298 ++++++++++++++++++++++++++++++++++++++++------- inst/Shiny/ui.R | 14 +- inst/Shiny/www |only man/NRW.Rd | 19 ++ man/bootSemNeT.Rd | 6 man/response.analysis.Rd |only 20 files changed, 586 insertions(+), 133 deletions(-)
Title: An Automated Cleaning Tool for Semantic and Linguistic Data
Description: Implements several functions that automates the cleaning and spell-checking of text data. Also converges, finalizes, removes plurals and continuous strings, and puts text data in binary format for semantic network analysis. Uses the 'SemNetDictionaries' package to make the cleaning process more accurate, efficient, and reproducible.
Author: Alexander P. Christensen [aut, cre]
(<https://orcid.org/0000-0002-9798-7037>)
Maintainer: Alexander P. Christensen <alexpaulchristensen@gmail.com>
Diff between SemNetCleaner versions 1.3.0 dated 2020-09-24 and 1.3.1 dated 2020-12-04
DESCRIPTION | 12 - MD5 | 62 +++--- NAMESPACE | 2 NEWS | 19 + R/bad.response.R |only R/correct.changes.R | 10 R/open.clean.R | 4 R/open.preprocess.R |only R/textcleaner.R | 62 ++++-- R/utils-SemNetCleaner.R | 438 ++++++++++++++++++++++++++++++++----------- R/zzz.R | 5 build |only data/open.clean.RData |binary data/open.preprocess.RData |only inst/doc |only man/SemNetCleaner-package.Rd | 50 ++-- man/bad.response.Rd |only man/best.guess.Rd | 116 +++++------ man/bin2resp.Rd | 80 +++---- man/convert2snafu.Rd | 118 +++++------ man/correct.changes.Rd | 178 ++++++++--------- man/letter.freq.Rd | 40 +-- man/open.animals.Rd | 72 +++---- man/open.clean.Rd | 52 ++--- man/open.preprocess.Rd |only man/pluralize.Rd | 130 ++++++------ man/qwerty.dist.Rd | 78 +++---- man/read.data.Rd | 216 ++++++++++----------- man/resp2bin.Rd | 70 +++--- man/singularize.Rd | 138 ++++++------- man/textcleaner.Rd | 277 ++++++++++++++------------- vignettes |only 32 files changed, 1280 insertions(+), 949 deletions(-)
Title: Read and Write TIFF Files
Description: Reads and writes TIFF format images and
returns them as a pixmap object. Because the resulting object
can be very large for even modestly sized TIFF images, images
can be reduced as they are read for improved performance. This
package is a wrapper around libtiff (www.libtiff.org), on which
it depends (i.e. the libtiff shared library must be on your
PATH for the binary to work, and tiffio.h must be on your
system to build the package from source). By using libtiff's
highlevel TIFFReadRGBAImage function, this package inherently
supports a wide range of image formats and compression schemes.
This package also provides an implementation of the Ridler
Autothresholding algorithm for easy generation of binary masks as
described in Ridler & Calvard (1978) <doi:10.1109/TSMC.1978.4310039>.
Author: Eric Kort <eric.kort@vai.org>
Maintainer: Eric Kort <eric.kort@vai.org>
Diff between rtiff versions 1.4.7 dated 2019-11-25 and 1.4.8 dated 2020-12-04
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS.md | 10 ++++------ R/newPixmapRGB.R | 3 +-- R/readTiff.R | 4 ++-- R/updateDescription.R | 2 +- R/writeTiff.R | 8 ++++---- configure.ac | 10 +++++++++- man/writeTiff.Rd | 6 +++--- src/rtiff.c | 45 +++++++++++++++++++++------------------------ 10 files changed, 58 insertions(+), 56 deletions(-)
Title: Connect to Your 'Revulytics' Data
Description: Facilitates making a connection to the
'Revulytics' API and executing various queries. You can use it to
get event data and metadata. The Revulytics documentation
is available at <https://docs.revenera.com/ui560/report/>. This
package is not supported by 'Flexera' (owner of the software).
Author: Chris Umphlett [aut, cre],
Avinash Panigrahi [aut]
Maintainer: Chris Umphlett <christopher.umphlett@gmail.com>
Diff between revulyticsR versions 0.0.2 dated 2020-08-25 and 0.0.3 dated 2020-12-04
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++++----- NAMESPACE | 2 ++ NEWS.md | 7 +++++++ R/get_daily_client_properties.R | 6 ++++-- R/get_new_users.R |only R/get_raw_data_files.R |only README.md | 8 +++++--- man/get_new_users.Rd |only man/get_raw_data_files.Rd |only 10 files changed, 31 insertions(+), 14 deletions(-)
Title: Interactive Grammar of Graphics
Description: An implementation of an interactive grammar of graphics, taking the
best parts of 'ggplot2', combining them with the reactive framework of
'shiny' and drawing web graphics using 'vega'.
Author: Winston Chang [aut, cre],
Hadley Wickham [aut],
RStudio [cph],
jQuery Foundation [cph] (jQuery library and jQuery UI library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/www/lib/jquery/AUTHORS.txt),
jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in
inst/www/lib/jquery-ui/AUTHORS.txt),
Mike Bostock [ctb, cph] (D3 library),
D3 contributors [ctb] (D3 library; authors listed at
https://github.com/d3/d3/graphs/contributors),
Trifacta Inc. [cph] (Vega library),
Vega contributors [ctb] (Vega library; authors listed at
https://github.com/trifacta/vega/graphs/contributors),
Sebastián Décima [ctb, cph] (javascript-detect-element-resize library)
Maintainer: Winston Chang <winston@rstudio.com>
Diff between ggvis versions 0.4.6 dated 2020-10-01 and 0.4.7 dated 2020-12-04
DESCRIPTION | 8 +- MD5 | 48 ++++++++--------- NAMESPACE | 56 +++++++++---------- NEWS.md | 4 + R/compute_auto_group.R | 2 R/compute_stack.R | 30 +++------- R/dplyr.R | 138 +++++++++++++++++++++++-------------------------- R/explain.R | 1 R/guide_axis.R | 2 R/layer_bars.R | 1 R/layer_boxplots.R | 2 R/layer_lines.R | 4 - R/mark.R | 2 R/props.R | 6 +- R/scale_ggvis.R | 4 - R/scales.R | 7 +- R/zzz.r | 3 + README.md | 6 -- man/add_axis.Rd | 2 man/dplyr-ggvis.Rd | 80 ++++++++++++++-------------- man/ggvis_scale.Rd | 4 - man/mark.Rd | 2 man/scale_datetime.Rd | 2 man/scale_numeric.Rd | 2 man/scale_ordinal.Rd | 3 - 25 files changed, 202 insertions(+), 217 deletions(-)
Title: Descriptive Analysis by Groups
Description: Create data summaries for quality control, extensive reports for exploring data, as well as publication-ready univariate or bivariate tables in several formats (plain text, HTML,LaTeX, PDF, Word or Excel. Create figures to quickly visualise the distribution of your data (boxplots, barplots, normality-plots, etc.). Display statistics (mean, median, frequencies, incidences, etc.). Perform the appropriate tests (t-test, Analysis of variance, Kruskal-Wallis, Fisher, log-rank, ...) depending on the nature of the described variable (normal, non-normal or qualitative). Summarize genetic data (Single Nucleotide Polymorphisms) data displaying Allele Frequencies and performing Hardy-Weinberg Equilibrium tests among other typical statistics and tests for these kind of data.
Author: Isaac Subirana [aut, cre] (<https://orcid.org/0000-0003-1676-0197>),
Joan Salvador [ctb]
Maintainer: Isaac Subirana <isubirana@imim.es>
Diff between compareGroups versions 4.4.5 dated 2020-09-01 and 4.4.6 dated 2020-12-04
DESCRIPTION | 8 - MD5 | 17 +- NAMESPACE | 27 ++-- NEWS.md | 3 inst/app/rsconnect/shinyapps.io/isubirana/compareGroups.dcf | 4 inst/app/ui.R | 12 + inst/app/www/logo-ciberesp.png |only inst/app/www/logo_imim_capsalera.gif |only inst/app/www/regicor_logo125.png |only inst/doc/compareGroups_vignette.html | 76 +++++++++++- man/compareGroups-package.Rd | 4 11 files changed, 121 insertions(+), 30 deletions(-)
Title: Execution of Multiple Clustering Algorithm
Description: The design of this package allows us to run different clustering packages and compare the results between them, to determine which algorithm behaves best from the data provided.
Author: Luis Alfonso Perez Martos [aut, cre]
Maintainer: Luis Alfonso Perez Martos <lapm0001@gmail.com>
Diff between Clustering versions 1.7 dated 2020-10-25 and 1.7.1 dated 2020-12-04
DESCRIPTION | 9 MD5 | 247 ++++--- NAMESPACE | 1 R/aggExCluster.R | 17 R/agnes.R | 34 - R/algorithm.R | 80 +- R/apcluster.R | 63 + R/app.R | 467 +++++++++----- R/basketball-data.R | 3 R/bolts-data.R | 25 R/clara.R | 42 - R/constants.R | 22 R/daisy.R | 72 +- R/diana.R | 17 R/evaluate_column_dataset.R | 6 R/external_validation.R | 121 ++- R/fanny.R | 42 - R/fuzzy.R | 62 + R/gama.R | 8 R/gmm.R | 42 - R/hclust.R | 21 R/internal_validation.R | 36 - R/kmeans.R | 49 - R/mona.R | 21 R/pam.R | 32 R/pvclust.R | 42 - R/pvpick.R | 21 R/read_arff.R | 14 R/stock-data.R | 6 R/stulong-data.R | 12 R/validation.R | 204 +++--- R/weather-data.R | 8 build |only inst/doc |only inst/shiny/clustering/server.R | 4 man/aggExCluster_euclidean.Rd | 20 man/agnes_euclidean_method.Rd | 20 man/agnes_manhattan_method.Rd | 20 man/apclusterK_euclidean.Rd | 24 man/apclusterK_manhattan.Rd | 24 man/apclusterK_minkowski.Rd | 24 man/appClustering.Rd | 12 man/basketball.Rd | 3 man/best_ranked_external_metrics.Rd | 11 man/best_ranked_internal_metrics.Rd | 14 man/bolts.Rd | 25 man/calculate_best_validation_external_by_metrics.Rd | 9 man/calculate_best_validation_internal_by_metrics.Rd | 9 man/calculate_connectivity.Rd | 3 man/calculate_result.Rd | 45 - man/calculate_validation_external_by_metrics.Rd | 3 man/calculate_validation_internal_by_metrics.Rd | 3 man/clara_euclidean_method.Rd | 24 man/clara_manhattan_method.Rd | 24 man/clustering.Rd | 108 ++- man/convert_table.Rd | 6 man/daisy_euclidean_method.Rd | 24 man/daisy_gower_method.Rd | 24 man/daisy_manhattan_method.Rd | 24 man/diana_euclidean_method.Rd | 20 man/entropy_metric.Rd | 6 man/evaluate_all_column_dataset.Rd | 9 man/evaluate_best_validation_external_by_metrics.Rd | 17 man/evaluate_best_validation_internal_by_metrics.Rd | 20 man/evaluate_validation_external_by_metrics.Rd | 16 man/evaluate_validation_internal_by_metrics.Rd | 14 man/execute_datasets.Rd | 33 man/execute_package_parallel.Rd | 45 - man/export_file_external.Rd | 14 man/export_file_internal.Rd | 14 man/external_validation.Rd | 9 man/fanny_euclidean_method.Rd | 24 man/fanny_manhattan_method.Rd | 24 man/fmeasure_metric.Rd | 6 man/fowlkes_mallows_index_metric.Rd | 6 man/fuzzy_cm_method.Rd | 24 man/fuzzy_gg_method.Rd | 24 man/fuzzy_gk_method.Rd | 23 man/gama.Rd | 8 man/gmm_euclidean_method.Rd | 24 man/gmm_manhattan_method.Rd | 24 man/hclust_euclidean.Rd | 24 man/information_external.Rd | 6 man/information_internal.Rd | 6 man/internal_validation.Rd | 6 man/kmeans_arma_method.Rd | 17 man/kmeans_rcpp_method.Rd | 24 man/measure_calculate.Rd | 6 man/metrics_calculate.Rd | 3 man/mini_kmeans_method.Rd | 17 man/mona_method.Rd | 24 man/number_columnas_external.Rd | 6 man/number_columnas_internal.Rd | 6 man/pam_euclidean_method.Rd | 21 man/pam_manhattan_method.Rd | 17 man/plot_clustering.Rd | 14 man/precision_metric.Rd | 3 man/pvclust_correlation_method.Rd | 24 man/pvclust_euclidean_method.Rd | 24 man/pvpick_method.Rd | 24 man/recall_metric.Rd | 3 man/result_external_algorithm_by_metric.Rd | 14 man/result_internal_algorithm_by_metric.Rd | 15 man/row_name_df_external.Rd | 6 man/row_name_df_internal.Rd | 6 man/show_result_external_algorithm_by_metric.Rd | 9 man/show_result_external_algorithm_group_by_clustering.Rd | 6 man/show_result_internal_algorithm_by_metric.Rd | 9 man/show_result_internal_algorithm_group_by_clustering.Rd | 8 man/sort.clustering.Rd | 24 man/stock.Rd | 9 man/stulong.Rd | 18 man/sub-.clustering.Rd | 16 man/variation_information_metric.Rd | 6 man/weather.Rd | 12 vignettes |only 116 files changed, 2075 insertions(+), 1115 deletions(-)
Title: Dictionaries for the 'SemNetCleaner' Package
Description: Implements dictionaries that can be used in the 'SemNetCleaner' package. Also includes several functions aimed at facilitating the text cleaning analysis in the 'SemNetCleaner' package. This package is designed to integrate and update word lists and dictionaries based on each user's individual needs by allowing users to store and save their own dictionaries. Dictionaries can be added to the 'SemNetDictionaries' package by submitting user-defined dictionaries to <https://github.com/AlexChristensen/SemNetDictionaries>.
Author: Alexander P. Christensen [aut, cre]
(<https://orcid.org/0000-0002-9798-7037>)
Maintainer: Alexander P. Christensen <alexpaulchristensen@gmail.com>
Diff between SemNetDictionaries versions 0.1.7 dated 2020-09-26 and 0.1.8 dated 2020-12-04
DESCRIPTION | 12 +++++++----- MD5 | 19 +++++++++++++++---- NEWS | 7 +++++++ R/append.dictionary.R | 30 +++++++++++++++++++----------- R/brit2us.R |only R/utils-SemNetDictionaries.R |only R/zzz.R | 3 ++- build |only data/brit2us.RData |only inst/doc |only man/brit2us.Rd |only vignettes |only 12 files changed, 50 insertions(+), 21 deletions(-)
More information about SemNetDictionaries at CRAN
Permanent link
Title: R Commander Plugin for Teaching Statistical Methods
Description: R Commander plugin for teaching statistical methods.
It adds a new menu for making easier the teaching of the main concepts about the main statistical methods.
Author: Tom<e1>s R. Cotos Ya<f1>ez [aut] (<https://orcid.org/0000-0002-7732-6565>),
Manuel A. Mosquera Rodr<ed>guez [aut, cre]
(<https://orcid.org/0000-0002-4769-6119>),
Ana P<e9>rez Gonz<e1>lez [aut] (<https://orcid.org/0000-0003-4706-7125>),
Benigno Reguengo Lareo [aut]
Maintainer: Manuel A. Mosquera Rodr<ed>guez <mamrguez@uvigo.es>
Diff between RcmdrPlugin.TeachStat versions 1.0.10 dated 2018-12-21 and 1.1.0 dated 2020-12-04
RcmdrPlugin.TeachStat-1.0.10/RcmdrPlugin.TeachStat/man/RcmdrPlugin.InferenciaEstadistica-internal.Rd |only RcmdrPlugin.TeachStat-1.0.10/RcmdrPlugin.TeachStat/man/RcmdrPlugin.InferenciaEstadistica-package.Rd |only RcmdrPlugin.TeachStat-1.0.10/RcmdrPlugin.TeachStat/man/twoOrMoreLevelFactors.Rd |only RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/DESCRIPTION | 14 RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/MD5 | 92 RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/NAMESPACE | 46 RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/NEWS | 25 RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/R/Aleatoriedad.R | 2 RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/R/IndexNumbers.R |only RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/R/RandVarMenu.R |only RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/R/aovre_functions.R |only RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/R/contrastHipotesisProporcion.R | 2 RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/R/contrasteHipotesisDiferenciaProporciones.R | 2 RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/R/contrasteHipotesisVarianza.R | 2 RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/R/convertirTipoVariable.R | 73 RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/R/estadisticadescriptiva.R | 145 RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/R/func_changes.R | 4 RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/R/globals.R | 19 RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/R/indexnum_functions.R |only RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/R/intervaloConfianza2Varianzas.R | 275 - RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/R/intervaloConfianzaDiferenciaProporciones.R | 571 +- RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/R/intervaloConfianzaMedia.R | 215 RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/R/intervaloConfianzaMediasIndependientes.R | 429 + RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/R/intervaloConfianzaMediasPareadas.R | 182 RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/R/intervaloConfianzaProporcion.R | 365 - RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/R/intervaloConfianzaVarianza.R | 239 RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/R/randomANOVA.R |only RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/R/resumenDatosTabulados.R | 2 RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/R/resumenNumerico.R | 36 RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/R/resumenNumericoPonderada.R | 2 RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/R/resumenNumericoVContinua.R |only RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/R/resumenNumericoVDiscreta.R | 535 +- RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/R/utilities.R | 315 + RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/data/Depositos.RData |only RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/data/Prices.RData |only RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/inst/etc/menus.txt | 154 RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/inst/etc/old_menus.txt | 268 - RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/inst/po/es/LC_MESSAGES/R-RcmdrPlugin.TeachStat.mo |binary RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/inst/po/gl/LC_MESSAGES/R-RcmdrPlugin.TeachStat.mo |binary RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/man/ComplexIN.Rd |only RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/man/Deflat.Rd |only RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/man/Depositos.Rd |only RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/man/GUI_ICHCMediasIndependientes.Rd | 2 RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/man/GUI_IndexNumbers.Rd |only RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/man/GUI_RandomANOVA.Rd |only RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/man/Prices.Rd |only RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/man/RcmdrPlugin.TeachStat-internal.Rd |only RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/man/RcmdrPlugin.TeachStat-package.Rd |only RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/man/Sindex.Rd |only RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/man/Utilities.Rd |only RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/man/aovreml.Rd |only RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/man/aovremm.Rd |only RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/man/calcularResumenVariablesContinuas.Rd |only RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/man/calcularResumenVariablesDiscretas.Rd | 16 RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/man/characRV.Rd |only RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/man/distrDefine.Rd |only RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/man/plotRegions.Rd |only RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/man/priceIndexNum.Rd |only RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/po/R-RcmdrPlugin.TeachStat.pot | 930 +++ RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/po/R-es.po | 2540 ++++++---- RcmdrPlugin.TeachStat-1.1.0/RcmdrPlugin.TeachStat/po/R-gl.po | 964 +++ 61 files changed, 6353 insertions(+), 2113 deletions(-)
More information about RcmdrPlugin.TeachStat at CRAN
Permanent link
Title: An R Client-Side Interface to the 'OpenSky' API
Description: Provides a client interface to the 'OpenSky' API <https://opensky-network.org>. It allows retrieval
of flight information, as well as aircraft state vectors.
Author: Rafael Ayala, Daniel Ayala, Aleix Sellés, Lara Sellés Vidal
Maintainer: Rafael Ayala <r.ayala14@imperial.ac.uk>
Diff between openSkies versions 0.99.7 dated 2020-12-01 and 0.99.8 dated 2020-12-04
DESCRIPTION | 8 MD5 | 6 inst/doc/openSkies.html | 2844 +++------------------------------------------- inst/unitTests/test_all.R | 4 4 files changed, 212 insertions(+), 2650 deletions(-)
Title: Pretty Scientific Plotting with Minor-Tick and Log Minor-Tick
Support
Description: Functions to make useful (and pretty) plots for scientific plotting. Additional plotting features are added for base plotting, with particular emphasis on making attractive log axis plots.
Author: Aaron Robotham
Maintainer: Aaron Robotham <aaron.robotham@uwa.edu.au>
Diff between magicaxis versions 2.0.10 dated 2019-07-05 and 2.2.1 dated 2020-12-04
DESCRIPTION | 12 ++--- MD5 | 53 +++++++++++----------- NAMESPACE | 9 ++- NEWS | 4 + R/magaxis.R | 39 ++++++++++------ R/magbin.R |only R/magclip.R | 9 ++- R/magcutout.R | 12 ++++- R/maghist.R | 16 ++++-- R/magimage.R | 9 +++ R/magimageRGB.R | 27 ++++++----- R/magimageWCS.R | 2 R/magmap.R | 6 +- R/magplot.R | 112 ++++++++++++++++++++++++++++++++++++++++++----- R/magtri.R | 37 ++++++++++++--- man/magaxis.Rd | 19 +++++-- man/magbar.Rd | 2 man/magbin.Rd |only man/magcon.Rd | 6 +- man/magcutout.Rd | 2 man/maghist.Rd | 9 +++ man/magicaxis-package.Rd | 8 +-- man/magimage.Rd | 18 ++++--- man/maglab.Rd | 2 man/magplot.Rd | 48 ++++++++++++++------ man/magrun.Rd | 2 man/magtri.Rd | 11 ++-- man/magwarp.Rd | 2 man/plot.magbin.Rd |only 29 files changed, 337 insertions(+), 139 deletions(-)
Title: Bayesian Additive Regression Trees
Description: Bayesian Additive Regression Trees (BART) provide flexible nonparametric modeling of covariates for continuous, binary, categorical and time-to-event outcomes. For more information on BART, see Chipman, George and McCulloch (2010) <doi:10.1214/09-AOAS285> and Sparapani, Logan, McCulloch and Laud (2016) <doi:10.1002/sim.6893>.
Author: Robert McCulloch [aut],
Rodney Sparapani [aut, cre],
Charles Spanbauer [aut],
Robert Gramacy [aut],
Matthew Pratola [aut],
Martyn Plummer [ctb],
Nicky Best [ctb],
Kate Cowles [ctb],
Karen Vines [ctb]
Maintainer: Rodney Sparapani <rsparapa@mcw.edu>
Diff between BART versions 2.7 dated 2019-12-05 and 2.8 dated 2020-12-04
BART-2.7/BART/vignettes/WileySTAT-V1.cls |only BART-2.7/BART/vignettes/bart.bib |only BART-2.7/BART/vignettes/figures/clbp.pdf |only BART-2.7/BART/vignettes/figures/count-pred-I-color.pdf |only BART-2.7/BART/vignettes/figures/count-pred-PI-color.pdf |only BART-2.7/BART/vignettes/figures/count-pred-RI-color.pdf |only BART-2.7/BART/vignettes/figures/geweke-lung-surv-bart.pdf |only BART-2.7/BART/vignettes/figures/geweke-pbart2-100.pdf |only BART-2.7/BART/vignettes/figures/geweke-pbart2-10000.pdf |only BART-2.7/BART/vignettes/figures/liver-AJ.pdf |only BART-2.7/BART/vignettes/figures/neck.pdf |only BART-2.7/BART/vignettes/figures/nox.eps |only BART-2.7/BART/vignettes/references.bib |only BART-2.7/BART/vignettes/statsref.docx |only BART-2.7/BART/vignettes/wb_stat.bst |only BART-2.8/BART/DESCRIPTION | 28 BART-2.8/BART/MD5 | 100 BART-2.8/BART/NEWS | 5 BART-2.8/BART/R/gbart.R | 9 BART-2.8/BART/R/mc.pwbart.R | 24 BART-2.8/BART/cleanup | 2 BART-2.8/BART/cleanup.win | 2 BART-2.8/BART/configure | 30 BART-2.8/BART/configure.ac | 22 BART-2.8/BART/demo/boston.R | 18 BART-2.8/BART/demo/geweke.pbart2.R | 2 BART-2.8/BART/demo/nhanes.pbart2.R | 14 BART-2.8/BART/demo/replication.R | 138 BART-2.8/BART/inst/doc/the-BART-R-package.Rnw | 2172 ++++++++------ BART-2.8/BART/inst/doc/the-BART-R-package.pdf |binary BART-2.8/BART/man/ACTG175.Rd | 25 BART-2.8/BART/man/recur.pre.bart.Rd | 14 BART-2.8/BART/man/xdm20.test.Rd | 16 BART-2.8/BART/man/xdm20.train.Rd | 16 BART-2.8/BART/man/ydm20.train.Rd | 16 BART-2.8/BART/src/Makevars.in | 2 BART-2.8/BART/vignettes/figures/RI-B6-Pl.pdf |binary BART-2.8/BART/vignettes/figures/RI-Th-B6.pdf |binary BART-2.8/BART/vignettes/figures/RI-Th-Pl.pdf |binary BART-2.8/BART/vignettes/figures/alligator.pdf |binary BART-2.8/BART/vignettes/figures/amdahl.pdf |binary BART-2.8/BART/vignettes/figures/boston1.pdf |binary BART-2.8/BART/vignettes/figures/boston2.pdf |binary BART-2.8/BART/vignettes/figures/boston3.pdf |binary BART-2.8/BART/vignettes/figures/boston4.pdf |binary BART-2.8/BART/vignettes/figures/boston5.pdf |binary BART-2.8/BART/vignettes/figures/boston6.pdf |binary BART-2.8/BART/vignettes/figures/chronic-pain1.pdf |binary BART-2.8/BART/vignettes/figures/chronic-pain2.pdf |binary BART-2.8/BART/vignettes/figures/geweke-pbart2-1000.pdf |binary BART-2.8/BART/vignettes/figures/geweke-pbart2-200.pdf |binary BART-2.8/BART/vignettes/figures/geweke-pbart2-5000.pdf |binary BART-2.8/BART/vignettes/figures/liver-BART.pdf |binary BART-2.8/BART/vignettes/figures/lung.pdf |binary BART-2.8/BART/vignettes/figures/parallel.pdf |binary BART-2.8/BART/vignettes/figures/sparse-beta-prime.pdf |binary BART-2.8/BART/vignettes/figures/sparse-pbart.pdf |binary BART-2.8/BART/vignettes/ref.bib |only BART-2.8/BART/vignettes/the-BART-R-package.Rnw | 2172 ++++++++------ 59 files changed, 3037 insertions(+), 1790 deletions(-)
Title: Regression with Functional Data
Description: Methods for regression for functional
data, including function-on-scalar, scalar-on-function, and
function-on-function regression. Some of the functions are applicable to
image data.
Author: Jeff Goldsmith [aut],
Fabian Scheipl [aut],
Lei Huang [aut],
Julia Wrobel [aut, cre],
Chongzhi Di [aut],
Jonathan Gellar [aut],
Jaroslaw Harezlak [aut],
Mathew W. McLean [aut],
Bruce Swihart [aut],
Luo Xiao [aut],
Ciprian Crainiceanu [aut],
Philip T. Reiss [aut],
Yakuan Chen [ctb],
Sonja Greven [ctb],
Lan Huo [ctb],
Madan Gopal Kundu [ctb],
So Young Park [ctb],
David L. Miller [ctb],
Ana-Maria Staicu [ctb]
Maintainer: Julia Wrobel <julia.wrobel@cuanschutz.edu>
Diff between refund versions 0.1-22 dated 2020-09-03 and 0.1-23 dated 2020-12-04
DESCRIPTION | 10 MD5 | 26 +- R/fgam.R | 26 -- R/pffr-robust.R | 2 R/pffr.R | 2 R/poridge.R | 2 R/predict.fgam.R | 468 +++++++++++++++++++++--------------------- R/predict.pfr.R | 10 R/vis.fgam.R | 18 - man/fgam.Rd | 26 -- man/pco_predict_preprocess.Rd | 2 man/predict.fgam.Rd | 10 man/predict.pfr.Rd | 10 man/vis.fgam.Rd | 18 - 14 files changed, 311 insertions(+), 319 deletions(-)
Title: Bayesian Network Meta-Analysis of Individual and Aggregate Data
Description: Network meta-analysis and network meta-regression models for
aggregate data, individual patient data, and mixtures of both individual
and aggregate data using multilevel network meta-regression as described by
Phillippo et al. (2020) <doi:10.1111/rssa.12579>. Models are estimated in a
Bayesian framework using 'Stan'.
Author: David M. Phillippo [aut, cre] (<https://orcid.org/0000-0003-2672-7841>)
Maintainer: David M. Phillippo <david.phillippo@bristol.ac.uk>
Diff between multinma versions 0.1.3 dated 2020-06-30 and 0.2.0 dated 2020-12-04
DESCRIPTION | 30 MD5 | 228 - NAMESPACE | 3 NEWS.md | 26 R/adapt_delta.R | 2 R/data.R | 39 R/doc-examples.R |only R/mcmc_array-class.R | 3 R/multinma-package.R | 21 R/nma.R | 170 + R/nma_data-class.R | 82 R/nma_data.R | 471 +++ R/nma_dic-class.R | 110 R/nma_dic.R | 60 R/nma_prior-class.R | 46 R/nma_summary-class.R | 49 R/predict.R | 221 + R/priors.R | 29 R/ranks.R | 9 R/relative_effects.R | 8 R/stan_nma-class.R | 110 R/stanmodels.R | 3 README.md | 68 build/partial.rdb |binary build/vignette.rds |binary data/hta_psoriasis.rda |only inst/CITATION | 2 inst/REFERENCES.bib | 136 inst/doc/example_atrial_fibrillation.html | 2062 +++++++-------- inst/doc/example_atrial_fibrillation.html.asis | 2 inst/doc/example_bcg_vaccine.html | 136 inst/doc/example_bcg_vaccine.html.asis | 2 inst/doc/example_blocker.html | 110 inst/doc/example_blocker.html.asis | 2 inst/doc/example_diabetes.html | 481 +-- inst/doc/example_dietary_fat.html | 158 - inst/doc/example_dietary_fat.html.asis | 2 inst/doc/example_hta_psoriasis.html |only inst/doc/example_hta_psoriasis.html.asis |only inst/doc/example_parkinsons.html | 551 ++-- inst/doc/example_parkinsons.html.asis | 2 inst/doc/example_plaque_psoriasis.html | 456 +-- inst/doc/example_plaque_psoriasis.html.asis | 2 inst/doc/example_smoking.html | 418 +-- inst/doc/example_smoking.html.asis | 2 inst/doc/example_statins.html | 394 +- inst/doc/example_thrombolytics.html | 324 +- inst/doc/example_thrombolytics.html.asis | 2 inst/doc/example_transfusion.html | 290 +- inst/doc/example_transfusion.html.asis | 2 inst/doc/vignette_overview.Rmd |only inst/doc/vignette_overview.html |only inst/stan/binomial_1par.stan | 11 inst/stan/binomial_2par.stan | 8 inst/stan/include/data_common.stan | 10 inst/stan/include/generated_quantities_common.stan | 16 inst/stan/include/generated_quantities_theta.stan |only inst/stan/include/generated_quantities_theta_fitted.stan |only inst/stan/include/prior_select.stan | 4 inst/stan/include/transformed_data_common.stan | 6 inst/stan/include/transformed_parameters_common.stan | 6 inst/stan/include/transformed_parameters_theta.stan |only inst/stan/normal.stan | 17 inst/stan/ordered_multinomial.stan |only inst/stan/poisson.stan | 11 man/aa_example_pso_mlnmr.Rd |only man/aa_example_smk_fe.Rd |only man/aa_example_smk_re.Rd |only man/aa_example_smk_ume.Rd |only man/adapt_delta.Rd | 2 man/dic.Rd | 46 man/figures |only man/hta_psoriasis.Rd |only man/mcmc_array-class.Rd | 24 man/multi.Rd |only man/multinma-package.Rd | 20 man/nma.Rd | 39 man/plot.nma_data.Rd | 12 man/plot.nma_dic.Rd | 49 man/plot.nma_summary.Rd | 26 man/plot_integration_error.Rd | 95 man/plot_prior_posterior.Rd | 24 man/posterior_ranks.Rd | 121 man/predict.stan_nma.Rd | 129 man/priors.Rd | 11 man/relative_effects.Rd | 119 man/set_agd_arm.Rd | 11 man/set_agd_contrast.Rd | 7 man/set_ipd.Rd | 7 man/summary.stan_nma.Rd | 24 src/Makevars | 10 src/Makevars.win | 11 src/RcppExports.cpp | 2 src/stanExports_binomial_1par.h | 1226 ++++---- src/stanExports_binomial_2par.h | 1291 +++++---- src/stanExports_normal.h | 1200 ++++---- src/stanExports_ordered_multinomial.cc |only src/stanExports_ordered_multinomial.h |only src/stanExports_poisson.h | 1166 ++++---- tests/testthat.R | 8 tests/testthat/test-breaks_integer.R |only tests/testthat/test-data_combine.R | 45 tests/testthat/test-data_set.R | 357 ++ tests/testthat/test-example_atrial_fibrillation.R | 79 tests/testthat/test-example_bcg_vaccine.R | 21 tests/testthat/test-example_blocker.R | 89 tests/testthat/test-example_diabetes.R | 6 tests/testthat/test-example_dietary_fat.R | 22 tests/testthat/test-example_hta_psoriasis.R |only tests/testthat/test-example_parkinsons.R | 242 - tests/testthat/test-example_plaque_psoriasis.R | 195 + tests/testthat/test-example_smoking.R | 93 tests/testthat/test-example_statins.R | 66 tests/testthat/test-example_thrombolytics.R | 1 tests/testthat/test-example_transfusion.R | 5 tests/testthat/test-multi.R |only vignettes/example_atrial_fibrillation.html.asis | 2 vignettes/example_bcg_vaccine.html.asis | 2 vignettes/example_blocker.html.asis | 2 vignettes/example_dietary_fat.html.asis | 2 vignettes/example_hta_psoriasis.html.asis |only vignettes/example_parkinsons.html.asis | 2 vignettes/example_plaque_psoriasis.html.asis | 2 vignettes/example_smoking.html.asis | 2 vignettes/example_thrombolytics.html.asis | 2 vignettes/example_transfusion.html.asis | 2 vignettes/vignette_overview.Rmd |only 127 files changed, 8296 insertions(+), 6036 deletions(-)
Title: Landscape Metrics for Categorical Map Patterns
Description: Calculates landscape metrics for categorical landscape patterns in
a tidy workflow. 'landscapemetrics' reimplements the most common metrics from
'FRAGSTATS' (<https://www.umass.edu/landeco/research/fragstats/fragstats.html>)
and new ones from the current literature on landscape metrics.
This package supports 'raster' spatial objects and takes
RasterLayer, RasterStacks, RasterBricks or lists of RasterLayer from the
'raster' package as input arguments. It further provides utility functions
to visualize patches, select metrics and building blocks to develop new
metrics.
Author: Maximillian H.K. Hesselbarth [aut, cre]
(<https://orcid.org/0000-0003-1125-9918>),
Marco Sciaini [aut] (<https://orcid.org/0000-0002-3042-5435>),
Jakub Nowosad [aut] (<https://orcid.org/0000-0002-1057-3721>),
Sebastian Hanss [aut] (<https://orcid.org/0000-0002-3990-4897>),
Laura J. Graham [ctb] (Input on package structure),
Jeffrey Hollister [ctb] (Input on package structure),
Kimberly A. With [ctb] (Input on package structure),
Florian Privé [ctb] (Original author of underlying C++ code for
get_nearestneighbour() function),
Project Nayuki [ctb] (Original author of underlying C++ code for
get_circumscribingcircle and lsm_p_circle),
Matt Strimas-Mackey [ctb] (Bugfix in sample_metrics())
Maintainer: Maximillian H.K. Hesselbarth <mhk.hesselbarth@gmail.com>
Diff between landscapemetrics versions 1.5.0 dated 2020-09-17 and 1.5.1 dated 2020-12-04
DESCRIPTION | 6 - MD5 | 22 ++--- NEWS.md | 6 + R/lsm_c_lsi.R | 102 ++++++++++++++----------- R/lsm_c_nlsi.R | 159 +++++++++++++++++++++++---------------- R/lsm_l_lsi.R | 88 ++++++++++++--------- build/vignette.rds |binary inst/doc/getstarted.html | 54 ++++++++++++- man/lsm_c_lsi.Rd | 7 - man/lsm_c_nlsi.Rd | 30 +++---- man/lsm_l_lsi.Rd | 7 - tests/testthat/test-lsm-c-nlsi.R | 7 + 12 files changed, 301 insertions(+), 187 deletions(-)
More information about landscapemetrics at CRAN
Permanent link
Title: Time Series Analysis and Computational Finance
Description: Time series analysis and computational finance.
Author: Adrian Trapletti [aut],
Kurt Hornik [aut, cre],
Blake LeBaron [ctb] (BDS test code)
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between tseries versions 0.10-47 dated 2019-06-05 and 0.10-48 dated 2020-12-04
tseries-0.10-47/tseries/src/cfuncs.f95 |only tseries-0.10-48/tseries/ChangeLog | 10 +++++++++ tseries-0.10-48/tseries/DESCRIPTION | 6 ++--- tseries-0.10-48/tseries/MD5 | 31 ++++++++++++++-------------- tseries-0.10-48/tseries/build |only tseries-0.10-48/tseries/data/NelPlo.rda |binary tseries-0.10-48/tseries/data/USeconomic.rda |binary tseries-0.10-48/tseries/data/bev.rda |binary tseries-0.10-48/tseries/data/camp.rda |binary tseries-0.10-48/tseries/data/ice.river.rda |binary tseries-0.10-48/tseries/data/nino.rda |binary tseries-0.10-48/tseries/data/tcm.rda |binary tseries-0.10-48/tseries/data/tcmd.rda |binary tseries-0.10-48/tseries/man/NelPlo.Rd | 16 ++++++++++---- tseries-0.10-48/tseries/man/nino.Rd | 2 - tseries-0.10-48/tseries/man/tcm.Rd | 2 - tseries-0.10-48/tseries/man/tcmd.Rd | 2 - tseries-0.10-48/tseries/src/cfuncs.f90 |only 18 files changed, 44 insertions(+), 25 deletions(-)
Title: Read, Validate, Analyze, and Map Files in the General Transit
Feed Specification
Description: Read General Transit Feed Specification (GTFS) zipfiles into a list of R dataframes. Perform validation of the data structure against the specification. Analyze the headways and frequencies at routes and stops. Create maps and perform spatial analysis on the routes and stops. Please see the GTFS documentation here for more detail: <http://gtfs.org/>.
Author: Flavio Poletti [aut],
Tom Buckley [aut, cre],
Danton Noriega-Goodwin [aut],
Mark Padgham [aut],
Angela Li [ctb],
Elaine McVey [ctb],
Charles Hans Thompson [ctb],
Michael Sumner [ctb],
Patrick Hausmann [ctb],
Bob Rudis [ctb],
James Lamb [ctb],
Alexandra Kapp [ctb],
Kearey Smith [ctb],
Dave Vautin [ctb],
Kyle Walker [ctb]
Maintainer: Tom Buckley <tom@tbuckl.com>
Diff between tidytransit versions 0.7.1 dated 2020-04-17 and 0.7.2 dated 2020-12-04
tidytransit-0.7.1/tidytransit/R/trips.R |only tidytransit-0.7.1/tidytransit/man/most_frequent_service.Rd |only tidytransit-0.7.1/tidytransit/man/set_trippattern.Rd |only tidytransit-0.7.1/tidytransit/man/shape_for_route.Rd |only tidytransit-0.7.1/tidytransit/man/shape_route_service.Rd |only tidytransit-0.7.1/tidytransit/man/shapes_for_routes.Rd |only tidytransit-0.7.1/tidytransit/tests/testthat/test-import-gtfs.R |only tidytransit-0.7.1/tidytransit/tests/testthat/test-main.R |only tidytransit-0.7.2/tidytransit/DESCRIPTION | 8 tidytransit-0.7.2/tidytransit/MD5 | 55 tidytransit-0.7.2/tidytransit/R/import.R | 5 tidytransit-0.7.2/tidytransit/R/joins.R | 139 - tidytransit-0.7.2/tidytransit/R/raptor.R | 5 tidytransit-0.7.2/tidytransit/R/service.R | 16 tidytransit-0.7.2/tidytransit/R/spec.R | 125 - tidytransit-0.7.2/tidytransit/R/utils.R | 20 tidytransit-0.7.2/tidytransit/inst/doc/frequency.Rmd | 1 tidytransit-0.7.2/tidytransit/inst/doc/frequency.html | 1076 +++++----- tidytransit-0.7.2/tidytransit/inst/doc/introduction.Rmd | 2 tidytransit-0.7.2/tidytransit/inst/doc/introduction.html | 621 +++-- tidytransit-0.7.2/tidytransit/inst/doc/servicepatterns.html | 842 ++++--- tidytransit-0.7.2/tidytransit/inst/doc/timetable.html | 850 ++++--- tidytransit-0.7.2/tidytransit/inst/extdata/sample-feed-invalid.zip |only tidytransit-0.7.2/tidytransit/inst/extdata/sample-feed-plus.zip |only tidytransit-0.7.2/tidytransit/man/set_servicepattern.Rd | 6 tidytransit-0.7.2/tidytransit/man/write_gtfs.Rd | 5 tidytransit-0.7.2/tidytransit/tests/testthat/Rplots.pdf |binary tidytransit-0.7.2/tidytransit/tests/testthat/test-raptor.R | 13 tidytransit-0.7.2/tidytransit/tests/testthat/test-read-gtfs.R |only tidytransit-0.7.2/tidytransit/tests/testthat/test-service.R |only tidytransit-0.7.2/tidytransit/tests/testthat/test-spatial.R | 7 tidytransit-0.7.2/tidytransit/tests/testthat/test-transitfeeds.R |only tidytransit-0.7.2/tidytransit/tests/testthat/test-utils.R | 51 tidytransit-0.7.2/tidytransit/vignettes/frequency.Rmd | 1 tidytransit-0.7.2/tidytransit/vignettes/introduction.Rmd | 2 35 files changed, 1956 insertions(+), 1894 deletions(-)
Title: Models for Drying and Soaking Kinetics of Seeds
Description: Bringing together tools for modeling drying and soaking (rehydration)
kinetics of seeds. This package contains several widely used predictive models
(e.g.: da Silva et al., 2018). As these are nonlinear, the functions are interactive-based
and easy-to-use. Least squares estimates are obtained with just a few visual adjustments
of the initial parameter values.
Reference: da Silva AR et al. (2018) <doi:10.2134/agronj2017.07.0373>.
Author: Anderson Rodrigo da Silva
Maintainer: Anderson Rodrigo da Silva <anderson.silva@ifgoiano.edu.br>
Diff between seedwater versions 1.0 dated 2019-02-12 and 2.0 dated 2020-12-04
DESCRIPTION | 11 ++++++----- MD5 | 12 ++++++------ NAMESPACE | 2 +- NEWS | 5 +++++ R/dryingmodels.R | 4 ++-- R/soakingmodels.R | 4 ++-- man/seedwater-package.Rd | 4 ++-- 7 files changed, 24 insertions(+), 18 deletions(-)
Title: Tools for Working with Image Pixels
Description: Provides tools to show and draw image pixels using 'HTML' widgets
and 'Shiny' applications. It can be used to visualize the 'MNIST' dataset
for handwritten digit recognition or to create new image recognition datasets.
Author: Daniel Falbel [aut, cre],
Javier Luraschi [aut],
RStudio [cph]
Maintainer: Daniel Falbel <daniel@rstudio.com>
Diff between pixels versions 0.1.0 dated 2017-10-27 and 0.1.1 dated 2020-12-04
DESCRIPTION | 14 ++++++++------ MD5 | 6 +++--- README.md | 2 ++ inst/htmlwidgets/lib/pixels.js | 6 +++--- 4 files changed, 16 insertions(+), 12 deletions(-)
Title: Accessing Data Stored in 'LaBB-CAT' Instances
Description: 'LaBB-CAT' is a web-based language corpus management
system developed by the New Zealand Institute of Language, Brain
and Behaviour (NZILBB) - see <https://labbcat.canterbury.ac.nz>.
This package defines functions for accessing corpus data in a 'LaBB-CAT'
instance. You must have at least version 20200812.1253 of 'LaBB-CAT'
to use this package.
For more information about 'LaBB-CAT', see
Robert Fromont and Jennifer Hay (2008) <doi:10.3366/E1749503208000142>
or
Robert Fromont (2017) <doi:10.1016/j.csl.2017.01.004>.
Author: Robert Fromont [aut, cre]
Maintainer: Robert Fromont <robert.fromont@canterbury.ac.nz>
Diff between nzilbb.labbcat versions 0.6-2 dated 2020-11-13 and 0.6-3 dated 2020-12-04
DESCRIPTION | 8 +- MD5 | 64 +++++++++--------- build/partial.rdb |binary tests/testthat/test-countAnnotations.R | 1 tests/testthat/test-getAnchors.R | 1 tests/testthat/test-getAnnotations.R | 1 tests/testthat/test-getAvailableMedia.R | 1 tests/testthat/test-getCorpusIds.R | 1 tests/testthat/test-getDeserializerDescriptors.R | 1 tests/testthat/test-getDictionaries.R | 1 tests/testthat/test-getDictionaryEntries.R | 1 tests/testthat/test-getFragments.R | 1 tests/testthat/test-getId.R | 1 tests/testthat/test-getLayer.R | 1 tests/testthat/test-getLayerIds.R | 1 tests/testthat/test-getLayers.R | 1 tests/testthat/test-getMatchAlignments.R | 3 tests/testthat/test-getMatchLabels.R | 3 tests/testthat/test-getMatches.R | 18 ++--- tests/testthat/test-getMatchingTrancriptIds.R | 1 tests/testthat/test-getMedia.R | 1 tests/testthat/test-getMediaTracks.R | 1 tests/testthat/test-getParticipantAttributes.R | 2 tests/testthat/test-getParticipantIds.R | 1 tests/testthat/test-getSerializerDescriptors.R | 1 tests/testthat/test-getSoundFragments.R | 1 tests/testthat/test-getSystemAttributes.R | 1 tests/testthat/test-getTranscriptAttributes.R | 2 tests/testthat/test-getTranscriptIds.R | 1 tests/testthat/test-getTranscriptIdsInCorpus.R | 1 tests/testthat/test-getTranscriptIdsWithParticipant.R | 1 tests/testthat/test-getUserInfo.R | 1 tests/testthat/test-processWithPraat.R | 1 33 files changed, 79 insertions(+), 46 deletions(-)
More information about nzilbb.labbcat at CRAN
Permanent link
Title: Obtaining Open Data from Instituto Canario De Estadistica
(ISTAC) API
Description: You can access to open data published in Instituto Canario De Estadistica (ISTAC) APIs at <https://datos.canarias.es/api/estadisticas/>.
Author: Alberto Gonzalez [aut, cre]
Maintainer: Alberto Gonzalez <jgonyanp@gobiernodecanarias.org>
Diff between istacr versions 0.1.1 dated 2019-12-17 and 0.1.3 dated 2020-12-04
DESCRIPTION | 12 - MD5 | 116 +++++----- R/indicators_auxiliary_value_tables.R | 8 R/indicators_indicators.R | 6 R/indicators_indicators_systems.R | 10 R/resources.R | 32 ++ R/statistical_resources_cubes.R | 8 R/structural_resources_category.R | 20 - R/structural_resources_classifications.R | 16 - R/structural_resources_concepts.R | 14 - R/structural_resources_datastructures.R | 18 - R/structural_resources_variables.R | 16 - man/get_datasets.Rd | 3 man/get_datasets_agency.Rd | 10 man/get_datasets_agency_resource.Rd | 11 man/get_datasets_agency_resource_version.Rd | 10 man/get_indicators.Rd | 10 man/get_indicators_code_data.Rd | 8 man/get_indicators_geographical_values.Rd | 7 man/get_indicators_systems_code_instances.Rd | 13 - man/get_indicators_systems_code_instances_code.Rd | 6 man/get_indicators_systems_code_instances_code_data.Rd | 10 man/get_structuralresources_categorisations.Rd | 8 man/get_structuralresources_categorisations_agency.Rd | 9 man/get_structuralresources_categorisations_agency_resource.Rd | 10 man/get_structuralresources_categorisations_agency_resource_version.Rd | 7 man/get_structuralresources_category_schemes.Rd | 8 man/get_structuralresources_category_schemes_agency.Rd | 9 man/get_structuralresources_category_schemes_agency_resource.Rd | 10 man/get_structuralresources_category_schemes_agency_resource_version.Rd | 7 man/get_structuralresources_category_schemes_agency_resource_version_categories.Rd | 13 - man/get_structuralresources_category_schemes_agency_resource_version_categories_id.Rd | 9 man/get_structuralresources_codelist_families.Rd | 8 man/get_structuralresources_codelists.Rd | 8 man/get_structuralresources_codelists_agency.Rd | 9 man/get_structuralresources_codelists_agency_resource.Rd | 10 man/get_structuralresources_codelists_agency_resource_version.Rd | 7 man/get_structuralresources_codelists_agency_resource_version_codes.Rd | 15 + man/get_structuralresources_codelists_agency_resource_version_codes_codeid.Rd | 9 man/get_structuralresources_concept_schemes.Rd | 8 man/get_structuralresources_concept_schemes_agency.Rd | 9 man/get_structuralresources_concept_schemes_agency_resource.Rd | 10 man/get_structuralresources_concept_schemes_agency_resource_version.Rd | 7 man/get_structuralresources_concept_schemes_agency_resource_version_concepts.Rd | 13 - man/get_structuralresources_concept_schemes_agency_resource_version_concepts_id.Rd | 9 man/get_structuralresources_content_constraints.Rd | 8 man/get_structuralresources_content_constraints_agency.Rd | 9 man/get_structuralresources_content_constraints_agency_resource.Rd | 10 man/get_structuralresources_content_constraints_agency_resource_version.Rd | 8 man/get_structuralresources_content_constraints_agency_resource_version_regions.Rd | 9 man/get_structuralresources_data_structures.Rd | 8 man/get_structuralresources_data_structures_agency.Rd | 9 man/get_structuralresources_data_structures_agency_resource.Rd | 10 man/get_structuralresources_data_structures_agency_resource_version.Rd | 7 man/get_structuralresources_geoinfo.Rd | 11 man/get_structuralresources_variable_families.Rd | 8 man/get_structuralresources_variable_families_id_variables.Rd | 9 man/get_structuralresources_variableelements.Rd | 9 man/get_structuralresources_variables.Rd | 8 59 files changed, 470 insertions(+), 229 deletions(-)
Title: Query 'git' Credentials from 'R'
Description: Query, set, delete credentials from the 'git' credential
store. Manage 'GitHub' tokens and other 'git' credentials. This package
is to be used by other packages that need to authenticate to 'GitHub'
and/or other 'git' repositories.
Author: Gábor Csárdi
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between gitcreds versions 0.1.0 dated 2020-11-06 and 0.1.1 dated 2020-12-04
DESCRIPTION | 9 MD5 | 45 +-- NEWS.md | 14 R/aaa-doc.R |only R/git-auth.R | 493 ++++------------------------------ R/list-creds.R | 32 -- R/print.R |only README.md | 2 build/vignette.rds |binary inst/doc/helper-survey.html | 102 ++----- inst/doc/package.html | 108 ++----- man/gitcreds-api.Rd | 2 man/gitcreds_cache_envvar.Rd | 2 man/gitcreds_get.Rd | 17 + man/gitcreds_parse_output.Rd | 2 tests/testthat/helper.R | 12 tests/testthat/test-cache.R | 20 - tests/testthat/test-format.R | 4 tests/testthat/test-gitcreds-delete.R | 4 tests/testthat/test-gitcreds-get.R | 12 tests/testthat/test-gitcreds-list.R | 6 tests/testthat/test-gitcreds-set.R | 34 +- tests/testthat/test-standalone.R |only tests/testthat/test-username.R | 46 +-- tests/testthat/test-utils.R | 105 +++---- 25 files changed, 353 insertions(+), 718 deletions(-)
Title: Tools for the Analysis of Epidemiological Data
Description: Tools for the analysis of epidemiological and surveillance data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, computation of confidence intervals around incidence risk and incidence rate estimates and sample size calculations for cross-sectional, case-control and cohort studies. Surveillance tools include functions to calculate an appropriate sample size for 1- and 2-stage representative freedom surveys, functions to estimate surveillance system sensitivity and functions to support scenario tree modelling analyses.
Author: Mark Stevenson <mark.stevenson1@unimelb.edu.au> and Evan Sergeant <evansergeant@gmail.com> with contributions from Telmo Nunes, Cord Heuer, Jonathon Marshall, Javier Sanchez, Ron Thornton, Jeno Reiczigel, Jim Robison-Cox, Paola Sebastiani, Peter Solymos, Kazuki Yoshida, Geoff Jones, Sarah Pirikahu, Simon Firestone, Ryan Kyle, Johann Popp, Mathew Jay and Charles Reynard.
Maintainer: Mark Stevenson <mark.stevenson1@unimelb.edu.au>
Diff between epiR versions 1.0-15 dated 2020-06-14 and 2.0.17 dated 2020-12-04
epiR-1.0-15/epiR/R/epi.ccsize.R |only epiR-1.0-15/epiR/R/epi.cluster1size.R |only epiR-1.0-15/epiR/R/epi.cluster2size.R |only epiR-1.0-15/epiR/R/epi.clustersize.R |only epiR-1.0-15/epiR/R/epi.cohortsize.R |only epiR-1.0-15/epiR/R/epi.detectsize.R |only epiR-1.0-15/epiR/R/epi.equivb.R |only epiR-1.0-15/epiR/R/epi.equivc.R |only epiR-1.0-15/epiR/R/epi.meansize.R |only epiR-1.0-15/epiR/R/epi.noninfb.R |only epiR-1.0-15/epiR/R/epi.noninfc.R |only epiR-1.0-15/epiR/R/epi.propsize.R |only epiR-1.0-15/epiR/R/epi.simplesize.R |only epiR-1.0-15/epiR/R/epi.stratasize.R |only epiR-1.0-15/epiR/R/epi.supb.R |only epiR-1.0-15/epiR/R/epi.supc.R |only epiR-1.0-15/epiR/R/epi.survivalsize.R |only epiR-1.0-15/epiR/man/epiR-deprecated.Rd |only epiR-2.0.17/epiR/DESCRIPTION | 15 - epiR-2.0.17/epiR/MD5 | 241 +++++++++++++--------- epiR-2.0.17/epiR/NAMESPACE | 79 +++++-- epiR-2.0.17/epiR/NEWS | 42 +++ epiR-2.0.17/epiR/R/epi.2by2.R | 114 +++++++--- epiR-2.0.17/epiR/R/epi.insthaz.R | 49 +++- epiR-2.0.17/epiR/R/epi.nomogram.R | 20 + epiR-2.0.17/epiR/R/epi.prcc.R | 161 ++++++++------ epiR-2.0.17/epiR/R/epi.psi.r |only epiR-2.0.17/epiR/R/epi.smr.R | 6 epiR-2.0.17/epiR/R/epi.sscc.R | 109 +++++++-- epiR-2.0.17/epiR/R/epi.ssclus1estb.R | 25 +- epiR-2.0.17/epiR/R/epi.ssclus1estc.R | 25 +- epiR-2.0.17/epiR/R/epi.ssclus2estb.R | 26 +- epiR-2.0.17/epiR/R/epi.ssclus2estc.R | 81 ++++--- epiR-2.0.17/epiR/R/epi.sscohortc.R | 104 +++++++-- epiR-2.0.17/epiR/R/epi.sscohortt.R | 15 + epiR-2.0.17/epiR/R/epi.sscompb.R | 59 +++-- epiR-2.0.17/epiR/R/epi.sscompc.R | 57 +++-- epiR-2.0.17/epiR/R/epi.sscomps.R | 21 + epiR-2.0.17/epiR/R/epi.ssdetect.R | 53 ++++ epiR-2.0.17/epiR/R/epi.ssdxtest.R |only epiR-2.0.17/epiR/R/epi.ssequb.R | 35 ++- epiR-2.0.17/epiR/R/epi.ssequc.R | 46 ++-- epiR-2.0.17/epiR/R/epi.ssninfb.R | 49 ++-- epiR-2.0.17/epiR/R/epi.ssninfc.R | 36 ++- epiR-2.0.17/epiR/R/epi.sssimpleestb.R | 23 +- epiR-2.0.17/epiR/R/epi.sssimpleestc.R | 15 + epiR-2.0.17/epiR/R/epi.ssstrataestb.R | 16 + epiR-2.0.17/epiR/R/epi.ssstrataestc.R | 22 +- epiR-2.0.17/epiR/R/epi.sssupb.R | 40 ++- epiR-2.0.17/epiR/R/epi.sssupc.R | 34 ++- epiR-2.0.17/epiR/R/epi.ssxsectn.R | 213 ++++++++++++------- epiR-2.0.17/epiR/R/rsu.adjrisk.R |only epiR-2.0.17/epiR/R/rsu.dxtest.R |only epiR-2.0.17/epiR/R/rsu.epinf.R |only epiR-2.0.17/epiR/R/rsu.pfree.equ.R |only epiR-2.0.17/epiR/R/rsu.pfree.rs.R |only epiR-2.0.17/epiR/R/rsu.pstar.R |only epiR-2.0.17/epiR/R/rsu.sep.R |only epiR-2.0.17/epiR/R/rsu.sep.cens.R |only epiR-2.0.17/epiR/R/rsu.sep.pass.R |only epiR-2.0.17/epiR/R/rsu.sep.rb.R |only epiR-2.0.17/epiR/R/rsu.sep.rb1rf.R |only epiR-2.0.17/epiR/R/rsu.sep.rb2rf.R |only epiR-2.0.17/epiR/R/rsu.sep.rb2st.r |only epiR-2.0.17/epiR/R/rsu.sep.rbvarse.r |only epiR-2.0.17/epiR/R/rsu.sep.rs.R |only epiR-2.0.17/epiR/R/rsu.sep.rs2st.R |only epiR-2.0.17/epiR/R/rsu.sep.rsfreecalc.R |only epiR-2.0.17/epiR/R/rsu.sep.rsmult.R |only epiR-2.0.17/epiR/R/rsu.sep.rspool.R |only epiR-2.0.17/epiR/R/rsu.sep.rsvarse.R |only epiR-2.0.17/epiR/R/rsu.spp.rs.R |only epiR-2.0.17/epiR/R/rsu.sspfree.rs.R |only epiR-2.0.17/epiR/R/rsu.sssep.rb2st1rf.R |only epiR-2.0.17/epiR/R/rsu.sssep.rb2st2rf.R |only epiR-2.0.17/epiR/R/rsu.sssep.rbmrg.R |only epiR-2.0.17/epiR/R/rsu.sssep.rbsrg.R |only epiR-2.0.17/epiR/R/rsu.sssep.rs.R |only epiR-2.0.17/epiR/R/rsu.sssep.rs2st.R |only epiR-2.0.17/epiR/R/rsu.sssep.rsfreecalc.R |only epiR-2.0.17/epiR/R/rsu.sssep.rspool.R |only epiR-2.0.17/epiR/R/zARwald.R | 2 epiR-2.0.17/epiR/R/zORml.R | 2 epiR-2.0.17/epiR/R/zRRscore.R | 2 epiR-2.0.17/epiR/R/zdisc.prior.R |only epiR-2.0.17/epiR/R/zget.cp.R |only epiR-2.0.17/epiR/R/zn.binom.R |only epiR-2.0.17/epiR/R/zn.hypergeo.R |only epiR-2.0.17/epiR/R/zrsu.rspfree.1.R |only epiR-2.0.17/epiR/R/zsep.binom.R |only epiR-2.0.17/epiR/R/zsep.binom.imperfect.R |only epiR-2.0.17/epiR/R/zsep.hypergeo.R |only epiR-2.0.17/epiR/R/zsep.pfree.R |only epiR-2.0.17/epiR/R/zsph.binom.R |only epiR-2.0.17/epiR/build/vignette.rds |binary epiR-2.0.17/epiR/inst/doc/epiR_RSurveillance.R |only epiR-2.0.17/epiR/inst/doc/epiR_RSurveillance.Rmd |only epiR-2.0.17/epiR/inst/doc/epiR_RSurveillance.html |only epiR-2.0.17/epiR/inst/doc/epiR_descriptive.html | 110 +++++++--- epiR-2.0.17/epiR/inst/doc/epiR_surveillance.R |only epiR-2.0.17/epiR/inst/doc/epiR_surveillance.Rmd |only epiR-2.0.17/epiR/inst/doc/epiR_surveillance.html |only epiR-2.0.17/epiR/man/epi.2by2.Rd | 17 + epiR-2.0.17/epiR/man/epi.about.Rd | 128 ++++++++++- epiR-2.0.17/epiR/man/epi.betabuster.Rd | 8 epiR-2.0.17/epiR/man/epi.bohning.Rd | 1 epiR-2.0.17/epiR/man/epi.ccc.Rd | 24 -- epiR-2.0.17/epiR/man/epi.conf.Rd | 22 +- epiR-2.0.17/epiR/man/epi.edr.Rd | 2 epiR-2.0.17/epiR/man/epi.empbayes.Rd | 4 epiR-2.0.17/epiR/man/epi.insthaz.Rd | 34 +-- epiR-2.0.17/epiR/man/epi.ltd.Rd | 10 epiR-2.0.17/epiR/man/epi.nomogram.Rd | 12 - epiR-2.0.17/epiR/man/epi.prcc.Rd | 24 +- epiR-2.0.17/epiR/man/epi.psi.Rd |only epiR-2.0.17/epiR/man/epi.smr.Rd | 4 epiR-2.0.17/epiR/man/epi.sscc.Rd | 36 +-- epiR-2.0.17/epiR/man/epi.ssclus1estb.Rd | 8 epiR-2.0.17/epiR/man/epi.ssclus1estc.Rd | 6 epiR-2.0.17/epiR/man/epi.ssclus2estb.Rd | 5 epiR-2.0.17/epiR/man/epi.ssclus2estc.Rd | 6 epiR-2.0.17/epiR/man/epi.sscohortc.Rd | 36 ++- epiR-2.0.17/epiR/man/epi.sscohortt.Rd | 9 epiR-2.0.17/epiR/man/epi.sscompb.Rd | 9 epiR-2.0.17/epiR/man/epi.sscompc.Rd | 9 epiR-2.0.17/epiR/man/epi.sscomps.Rd | 9 epiR-2.0.17/epiR/man/epi.ssdetect.Rd | 19 + epiR-2.0.17/epiR/man/epi.ssdxtest.Rd |only epiR-2.0.17/epiR/man/epi.ssequb.Rd | 13 - epiR-2.0.17/epiR/man/epi.ssequc.Rd | 18 - epiR-2.0.17/epiR/man/epi.ssninfb.Rd | 15 - epiR-2.0.17/epiR/man/epi.ssninfc.Rd | 14 - epiR-2.0.17/epiR/man/epi.sssimpleestb.Rd | 45 +++- epiR-2.0.17/epiR/man/epi.sssimpleestc.Rd | 10 epiR-2.0.17/epiR/man/epi.ssstrataestb.Rd | 9 epiR-2.0.17/epiR/man/epi.ssstrataestc.Rd | 7 epiR-2.0.17/epiR/man/epi.sssupb.Rd | 13 - epiR-2.0.17/epiR/man/epi.sssupc.Rd | 14 - epiR-2.0.17/epiR/man/epi.ssxsectn.Rd | 74 ++++-- epiR-2.0.17/epiR/man/rsu.adjrisk.Rd |only epiR-2.0.17/epiR/man/rsu.dxtest.Rd |only epiR-2.0.17/epiR/man/rsu.epinf.Rd |only epiR-2.0.17/epiR/man/rsu.pfree.equ.Rd |only epiR-2.0.17/epiR/man/rsu.pfree.rs.Rd |only epiR-2.0.17/epiR/man/rsu.pstar.Rd |only epiR-2.0.17/epiR/man/rsu.sep.Rd |only epiR-2.0.17/epiR/man/rsu.sep.cens.Rd |only epiR-2.0.17/epiR/man/rsu.sep.pass.Rd |only epiR-2.0.17/epiR/man/rsu.sep.rb.Rd |only epiR-2.0.17/epiR/man/rsu.sep.rb1rf.Rd |only epiR-2.0.17/epiR/man/rsu.sep.rb2rf.Rd |only epiR-2.0.17/epiR/man/rsu.sep.rb2st.Rd |only epiR-2.0.17/epiR/man/rsu.sep.rbvarse.Rd |only epiR-2.0.17/epiR/man/rsu.sep.rs.Rd |only epiR-2.0.17/epiR/man/rsu.sep.rs2st.Rd |only epiR-2.0.17/epiR/man/rsu.sep.rsfreecalc.Rd |only epiR-2.0.17/epiR/man/rsu.sep.rsmult.Rd |only epiR-2.0.17/epiR/man/rsu.sep.rspool.Rd |only epiR-2.0.17/epiR/man/rsu.sep.rsvarse.Rd |only epiR-2.0.17/epiR/man/rsu.spp.rs.Rd |only epiR-2.0.17/epiR/man/rsu.sspfree.rs.Rd |only epiR-2.0.17/epiR/man/rsu.sssep.rb2st1rf.Rd |only epiR-2.0.17/epiR/man/rsu.sssep.rb2st2rf.Rd |only epiR-2.0.17/epiR/man/rsu.sssep.rbmrg.Rd |only epiR-2.0.17/epiR/man/rsu.sssep.rbsrg.Rd |only epiR-2.0.17/epiR/man/rsu.sssep.rs.Rd |only epiR-2.0.17/epiR/man/rsu.sssep.rs2st.Rd |only epiR-2.0.17/epiR/man/rsu.sssep.rsfreecalc.Rd |only epiR-2.0.17/epiR/man/rsu.sssep.rspool.Rd |only epiR-2.0.17/epiR/vignettes/epiR_RSurveillance.Rmd |only epiR-2.0.17/epiR/vignettes/epiR_surveillance.Rmd |only epiR-2.0.17/epiR/vignettes/epiR_surveillance.bib |only 172 files changed, 1827 insertions(+), 794 deletions(-)
Title: Continuous Norming
Description: Conventional methods for producing standard scores in psychometrics or biometrics
are often plagued with "jumps" or "gaps" (i.e., discontinuities) in norm tables and low
confidence for assessing extreme scores. The continuous norming method introduced by A.
Lenhard et al. (2016, <doi:10.1177/1073191116656437>; 2019, <doi:10.1371/journal.pone.0222279>) and generates continuous test norm
scores on the basis of the raw data from standardization samples, without requiring
assumptions about the distribution of the raw data: Norm scores are directly established
from raw data by modeling the latter ones as a function of both percentile scores and an
explanatory variable (e.g., age). The method minimizes bias arising from sampling and
measurement error, while handling marked deviations from normality, addressing bottom
or ceiling effects and capturing almost all of the variance in the original norm data
sample. An online demonstration is available via <https://cnorm.shinyapps.io/cNORM/>.
Author: Wolfgang Lenhard [cre, aut] (<https://orcid.org/0000-0002-8184-6889>),
Alexandra Lenhard [aut],
Sebastian Gary [aut]
Maintainer: Wolfgang Lenhard <wolfgang.lenhard@uni-wuerzburg.de>
Diff between cNORM versions 1.2.4 dated 2020-11-16 and 2.0.0 dated 2020-12-04
cNORM-1.2.4/cNORM/R/boxcox.R |only cNORM-1.2.4/cNORM/man/boxcox.Rd |only cNORM-1.2.4/cNORM/man/plotBoxCox.Rd |only cNORM-1.2.4/cNORM/man/predictNormBC.Rd |only cNORM-1.2.4/cNORM/man/predictRawBC.Rd |only cNORM-2.0.0/cNORM/DESCRIPTION | 8 cNORM-2.0.0/cNORM/MD5 | 90 ++++--- cNORM-2.0.0/cNORM/NAMESPACE | 20 + cNORM-2.0.0/cNORM/NEWS.md | 40 +++ cNORM-2.0.0/cNORM/R/cNORM.R | 166 ++++++++++++-- cNORM-2.0.0/cNORM/R/modelling.R | 206 +++++++++++++----- cNORM-2.0.0/cNORM/R/plot.R | 181 +++++++++++---- cNORM-2.0.0/cNORM/R/predict.R | 117 +++++++--- cNORM-2.0.0/cNORM/R/preparation.R | 296 +++++++++++++++++++++----- cNORM-2.0.0/cNORM/R/s3methods.R |only cNORM-2.0.0/cNORM/README.md | 52 ++-- cNORM-2.0.0/cNORM/inst/doc/cNORM-Demo.R | 32 +- cNORM-2.0.0/cNORM/inst/doc/cNORM-Demo.Rmd | 128 ++++++----- cNORM-2.0.0/cNORM/inst/doc/cNORM-Demo.html | 264 +++++++++++++---------- cNORM-2.0.0/cNORM/man/bestModel.Rd | 20 + cNORM-2.0.0/cNORM/man/cNORM.Rd | 198 +++++++---------- cNORM-2.0.0/cNORM/man/checkConsistency.Rd | 24 +- cNORM-2.0.0/cNORM/man/cnorm.cv.Rd | 36 ++- cNORM-2.0.0/cNORM/man/computePowers.Rd | 6 cNORM-2.0.0/cNORM/man/derivationTable.Rd | 19 + cNORM-2.0.0/cNORM/man/derive.Rd | 17 + cNORM-2.0.0/cNORM/man/getNormCurve.Rd | 17 + cNORM-2.0.0/cNORM/man/getNormScoreSE.Rd |only cNORM-2.0.0/cNORM/man/modelSummary.Rd |only cNORM-2.0.0/cNORM/man/normTable.Rd | 20 + cNORM-2.0.0/cNORM/man/plot.cnorm.Rd |only cNORM-2.0.0/cNORM/man/plotCnorm.Rd |only cNORM-2.0.0/cNORM/man/plotDensity.Rd | 21 + cNORM-2.0.0/cNORM/man/plotDerivative.Rd | 21 + cNORM-2.0.0/cNORM/man/plotNorm.Rd | 21 + cNORM-2.0.0/cNORM/man/plotNormCurves.Rd | 20 + cNORM-2.0.0/cNORM/man/plotPercentileSeries.Rd | 20 + cNORM-2.0.0/cNORM/man/plotPercentiles.Rd | 20 + cNORM-2.0.0/cNORM/man/plotRaw.Rd | 23 +- cNORM-2.0.0/cNORM/man/plotSubset.Rd | 21 + cNORM-2.0.0/cNORM/man/predictNorm.Rd | 20 + cNORM-2.0.0/cNORM/man/predictRaw.Rd | 17 + cNORM-2.0.0/cNORM/man/prepareData.Rd | 24 +- cNORM-2.0.0/cNORM/man/print.cnorm.Rd |only cNORM-2.0.0/cNORM/man/printSubset.Rd | 24 +- cNORM-2.0.0/cNORM/man/rangeCheck.Rd | 26 +- cNORM-2.0.0/cNORM/man/rankByGroup.Rd | 33 ++ cNORM-2.0.0/cNORM/man/rankBySlidingWindow.Rd | 16 + cNORM-2.0.0/cNORM/man/rawTable.Rd | 26 +- cNORM-2.0.0/cNORM/man/regressionFunction.Rd | 20 + cNORM-2.0.0/cNORM/man/summary.cnorm.Rd |only cNORM-2.0.0/cNORM/vignettes/cNORM-Demo.Rmd | 128 ++++++----- 52 files changed, 1710 insertions(+), 748 deletions(-)
Title: Functions for Working with Two- And Four-Parameter Beta
Probability Distributions
Description: Package providing a number of functions for working with Two- and
Four-parameter Beta distributions, including alternative parameterizations,
calculation of moments, and fitting of Beta distributions to vectors of
values. Also includes functions for estimating classification accuracy,
diagnostic performance and consistency, using what is generally known as
the "Livingston and Lewis approach" in the psychometric literature as the
foundational method, which makes extensive use of the Beta distribution. A
shiny application is now online which provides a GUI for the Livingston and
Lewis approach. The application can be found at <https://hthaa.shinyapps.io/shinybeta/>
Livingston and Lewis (1995) <doi:10.1111/j.1745-3984.1995.tb00462.x>.
Hanson (1991) <https://files.eric.ed.gov/fulltext/ED344945.pdf>.
Glas, Lijmer, Prins, Bonsel and Bossuyt (2003) <doi:10.1016/S0895-4356(03)00177-X>.
Author: Haakon Haakstad
Maintainer: Haakon Haakstad <h.t.haakstad@cemo.uio.no>
Diff between betafunctions versions 1.4.0 dated 2020-10-18 and 1.4.2 dated 2020-12-04
DESCRIPTION | 10 ++++--- MD5 | 20 +++++++-------- NEWS.md | 18 +++++++++++++- R/betafunctions.R | 61 +++++++++++++++++++++++++++++++++++++----------- R/classification.R | 67 ++++++++++++++++++++++++++++++----------------------- man/Beta.tp.fit.Rd | 6 ++-- man/ETL.Rd | 8 +++--- man/LABMSU.Rd | 2 - man/LL.CA.Rd | 6 ++-- man/LL.ROC.Rd | 9 +++++++ man/UABMSL.Rd | 2 - 11 files changed, 140 insertions(+), 69 deletions(-)
Title: Statistical Modelling of Extreme Values
Description: Statistical extreme value modelling of threshold excesses, maxima
and multivariate extremes. Univariate models for threshold excesses and maxima
are the Generalised Pareto, and Generalised Extreme Value model respectively.
These models may be fitted by using maximum (optionally penalised-)likelihood,
or Bayesian estimation, and both classes of models may be fitted with covariates
in any/all model parameters. Model diagnostics support the fitting process.
Graphical output for visualising fitted models and return level estimates is
provided. For serially dependent sequences, the intervals declustering algorithm
of Ferro and Segers (2003) <doi:10.1111/1467-9868.00401> is provided, with
diagnostic support to aid selection of threshold and declustering horizon.
Multivariate modelling is performed via the conditional approach of Heffernan
and Tawn (2004) <doi:10.1111/j.1467-9868.2004.02050.x>, with graphical tools for
threshold selection and to diagnose estimation convergence.
Author: Harry Southworth [aut, cre],
Janet E. Heffernan [aut],
Paul D. Metcalfe [aut],
Yiannis Papastathopoulos [ctb],
Alec Stephenson [ctb],
Stuart Coles [ctb]
Maintainer: Harry Southworth <harry.southworth@gmail.com>
Diff between texmex versions 2.4.7 dated 2020-06-12 and 2.4.8 dated 2020-12-04
CHANGES | 11 ++++++++++- DESCRIPTION | 12 ++++++------ MD5 | 16 ++++++++-------- NAMESPACE | 2 -- R/ggplot.thresh.R | 2 +- R/glo.R | 8 ++++---- R/gpdRangeFit.R | 25 ++++++++++++++----------- build/vignette.rds |binary inst/doc/texmexVignettes.html | 20 ++++++++++++++++++-- 9 files changed, 61 insertions(+), 35 deletions(-)
Title: Penalized Regression Calibration (PRC)
Description: Computes the penalized regression calibration (PRC)
method, that allows to predict survival using high-dimensional
longitudinal predictors. PRC is described in Signorelli et al. (in
review).
Author: Mirko Signorelli [aut, cre, cph]
(<https://orcid.org/0000-0002-8102-3356>),
Pietro Spitali [ctb],
Roula Tsonaka [ctb]
Maintainer: Mirko Signorelli <msignorelli.rpackages@gmail.com>
Diff between pencal versions 0.1.1 dated 2020-11-25 and 0.1.2 dated 2020-12-04
DESCRIPTION | 10 +++--- MD5 | 41 ++++++++++++++----------- NAMESPACE | 1 R/datasets.R |only R/draw_cluster_bootstrap.R | 3 + R/fit_lmms.R | 30 ++++++++++-------- R/fit_prclmm.R | 14 +++++--- R/performance_prclmm.R | 59 ++++++++++-------------------------- R/prepare_longdata.R | 2 + R/simulate_prclmm_data.R | 12 +++---- R/summarize_lmms.R | 15 +++++---- R/survpred_prclmm.R |only data |only inst/NEWS.md | 11 ++++++ man/draw_cluster_bootstrap.Rd | 9 +++-- man/fit_lmms.Rd | 57 +++++++++++++++-------------------- man/fit_prclmm.Rd | 53 ++++++++++++++------------------- man/fitted_prclmm.Rd |only man/performance_prclmm.Rd | 67 +++++++++++------------------------------- man/prepare_longdata.Rd | 11 +++--- man/simulate_prclmm_data.Rd | 40 ++++++++++--------------- man/simulate_t_weibull.Rd | 10 +++--- man/summarize_lmms.Rd | 31 ++++++++++--------- man/survpred_prclmm.Rd |only 24 files changed, 214 insertions(+), 262 deletions(-)
Title: WordNet Interface
Description: An interface to WordNet using the Jawbone Java API to WordNet.
WordNet (<https://wordnet.princeton.edu/>) is a large lexical database of
English. Nouns, verbs, adjectives and adverbs are grouped into sets of
cognitive synonyms (synsets), each expressing a distinct concept. Synsets
are interlinked by means of conceptual-semantic and lexical relations.
Please note that WordNet(R) is a registered tradename. Princeton
University makes WordNet available to research and commercial users
free of charge provided the terms of their license
(<https://wordnet.princeton.edu/license-and-commercial-use>) are followed,
and proper reference is made to the project using an appropriate
citation (<https://wordnet.princeton.edu/citing-wordnet>).
Author: Ingo Feinerer [aut],
Kurt Hornik [aut, cre] (<https://orcid.org/0000-0003-4198-9911>),
Mike Wallace [ctb, cph] (Jawbone Java WordNet API library)
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between wordnet versions 0.1-14 dated 2017-11-26 and 0.1-15 dated 2020-12-04
DESCRIPTION | 18 +++++++------- MD5 | 40 +++++++++++++++---------------- build/vignette.rds |binary configure | 59 +++++++++++++++++++++++++---------------------- inst/CITATION | 2 - inst/doc/wordnet.R | 1 inst/doc/wordnet.Rnw | 4 +-- inst/doc/wordnet.pdf |binary man/getDict.Rd | 4 +-- man/getDictInstance.Rd | 2 - man/getFilterTypes.Rd | 2 - man/getIndexTerms.Rd | 2 - man/getLemma.Rd | 2 - man/getRelatedSynsets.Rd | 4 +-- man/getSynonyms.Rd | 2 - man/getSynsets.Rd | 2 - man/getTermFilter.Rd | 2 - man/getWord.Rd | 2 - man/initDict.Rd | 4 +-- man/setDict.Rd | 4 +-- vignettes/wordnet.Rnw | 4 +-- 21 files changed, 82 insertions(+), 78 deletions(-)
Title: N-Gram Based Text Categorization
Description: Text categorization based on n-grams.
Author: Kurt Hornik [aut, cre] (<https://orcid.org/0000-0003-4198-9911>),
Johannes Rauch [aut],
Christian Buchta [aut],
Ingo Feinerer [aut]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between textcat versions 1.0-6 dated 2018-11-11 and 1.0-7 dated 2020-12-04
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- R/textcat.R | 6 +++--- build/partial.rdb |binary data/ECIMCI_profiles.rda |binary data/TC_byte_profiles.rda |binary data/TC_char_profiles.rda |binary man/ECIMCI_profiles.Rd | 2 +- man/TC_profiles.Rd | 6 +++--- man/textcat.Rd | 3 +-- 10 files changed, 20 insertions(+), 21 deletions(-)
Title: Model and Solve Mixed Integer Linear Programs
Description: Model mixed integer linear programs in an algebraic way directly in R.
The model is solver-independent and thus offers the possibility
to solve a model with different solvers. It currently only supports
linear constraints and objective functions. See the 'ompr'
website <https://dirkschumacher.github.io/ompr/> for more information,
documentation and examples.
Author: Dirk Schumacher [aut, cre]
Maintainer: Dirk Schumacher <mail@dirk-schumacher.net>
Diff between ompr versions 0.8.0 dated 2018-06-11 and 0.8.1 dated 2020-12-04
DESCRIPTION | 11 - MD5 | 84 +++++----- NEWS.md | 14 + R/class-solution.R | 6 R/helper.R | 5 R/linearopt-variables.R | 23 ++ R/milp.R | 22 +- man/LinearVariableCollection-LinearVariableCollection-method.Rd | 1 man/LinearVariableCollection-LinearVariableSum-method.Rd | 1 man/LinearVariableCollection-missing-method.Rd | 1 man/LinearVariableCollection-numeric-method.Rd | 1 man/LinearVariableSum-LinearVariableCollection-method.Rd | 1 man/LinearVariableSum-LinearVariableSum-method.Rd | 1 man/LinearVariableSum-missing-method.Rd | 1 man/LinearVariableSum-numeric-method.Rd | 1 man/MILPModel.Rd | 8 man/add_constraint.Rd | 9 - man/add_variable.Rd | 14 + man/colwise.Rd | 12 + man/new_solution.Rd | 9 - man/numeric-LinearVariableCollection-method.Rd | 1 man/numeric-LinearVariableSum-method.Rd | 1 man/ompr.Rd | 1 man/plus-LinearVariableCollection-LinearVariableCollection-method.Rd | 1 man/plus-LinearVariableCollection-LinearVariableSum-method.Rd | 1 man/plus-LinearVariableCollection-missing-method.Rd | 1 man/plus-LinearVariableCollection-numeric-method.Rd | 1 man/plus-LinearVariableSum-LinearVariableCollection-method.Rd | 1 man/plus-LinearVariableSum-LinearVariableSum-method.Rd | 1 man/plus-LinearVariableSum-missing-method.Rd | 1 man/plus-LinearVariableSum-numeric-method.Rd | 1 man/plus-numeric-LinearVariableCollection-method.Rd | 1 man/plus-numeric-LinearVariableSum-method.Rd | 1 man/slash-LinearVariableCollection-numeric-method.Rd | 1 man/slash-LinearVariableSum-numeric-method.Rd | 1 man/sub-LinearVariableCollection-ANY-ANY-missing-method.Rd | 4 man/times-LinearVariableCollection-numeric-method.Rd | 1 man/times-LinearVariableSum-numeric-method.Rd | 1 man/times-numeric-LinearVariableCollection-method.Rd | 1 man/times-numeric-LinearVariableSum-method.Rd | 1 src/check_for_unknown_vars_impl.cpp | 4 tests/testthat/test-model-milp.R | 45 +++++ tests/testthat/test-solution.R | 17 ++ 43 files changed, 209 insertions(+), 105 deletions(-)
Title: Selected ISO Codes
Description: ISO language, territory, currency, script and character codes.
Provides ISO 639 language codes, ISO 3166 territory codes, ISO 4217
currency codes, ISO 15924 script codes, and the ISO 8859 character codes
as well as the UN M.49 area codes.
Author: Christian Buchta [aut],
Kurt Hornik [aut, cre] (<https://orcid.org/0000-0003-4198-9911>)
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between ISOcodes versions 2020.03.16 dated 2020-03-16 and 2020.12.04 dated 2020-12-04
DESCRIPTION | 6 +++--- MD5 | 40 ++++++++++++++++++++-------------------- data/ISO_15924.rda |binary data/ISO_3166_1.rda |binary data/ISO_3166_2.rda |binary data/ISO_3166_3.rda |binary data/ISO_4217.rda |binary data/ISO_4217_Historic.rda |binary data/ISO_639_2.rda |binary data/ISO_639_3.rda |binary data/ISO_639_3_Retirements.rda |binary data/ISO_639_5.rda |binary data/ISO_8859.rda |binary data/UN_M.49_Countries.rda |binary data/UN_M.49_Regions.rda |binary man/ISO_15924.Rd | 4 ++-- man/ISO_3166.Rd | 2 +- man/ISO_4217.Rd | 2 +- man/ISO_639.Rd | 8 ++++---- man/ISO_8859.Rd | 4 ++-- man/UN_M.49.Rd | 2 +- 21 files changed, 34 insertions(+), 34 deletions(-)
Title: Fast R and C++ Access to NIfTI Images
Description: Provides very fast read and write access to images stored in the
NIfTI-1, NIfTI-2 and ANALYZE-7.5 formats, with seamless synchronisation
of in-memory image objects between compiled C and interpreted R code. Also
provides a simple image viewer, and a C/C++ API that can be used by other
packages. Not to be confused with 'RNiftyReg', which performs image
registration and applies spatial transformations.
Author: Jon Clayden [cre, aut] (<https://orcid.org/0000-0002-6608-0619>),
Bob Cox [aut],
Mark Jenkinson [aut],
Matt Hall [ctb],
Rick Reynolds [ctb],
Kate Fissell [ctb],
Jean-loup Gailly [cph],
Mark Adler [cph]
Maintainer: Jon Clayden <code@clayden.org>
Diff between RNifti versions 1.2.3 dated 2020-10-08 and 1.3.0 dated 2020-12-04
DESCRIPTION | 10 MD5 | 194 +- NAMESPACE | 5 NEWS | 18 R/extensions.R |only R/nifti.R | 10 inst/doxygen/html/a00002_source.html | 2303 ++++++++++++++++--------------- inst/doxygen/html/a00051.html | 97 - inst/doxygen/html/a00054.html | 213 ++ inst/doxygen/html/a00059.html | 42 inst/doxygen/html/a00062.html | 447 ++++-- inst/doxygen/html/a00063.html |only inst/doxygen/html/a00066.html |only inst/doxygen/html/annotated.html | 25 inst/doxygen/html/classes.html | 11 inst/doxygen/html/functions.html | 81 - inst/doxygen/html/functions_func.html | 68 inst/doxygen/html/functions_vars.html | 7 inst/doxygen/html/hierarchy.html | 27 inst/doxygen/html/search/all_1.js | 3 inst/doxygen/html/search/all_10.js | 21 inst/doxygen/html/search/all_11.js | 20 inst/doxygen/html/search/all_12.js | 12 inst/doxygen/html/search/all_13.js | 6 inst/doxygen/html/search/all_14.js | 8 inst/doxygen/html/search/all_15.js | 2 inst/doxygen/html/search/all_16.js | 4 inst/doxygen/html/search/all_2.js | 8 inst/doxygen/html/search/all_3.js | 17 inst/doxygen/html/search/all_4.js | 21 inst/doxygen/html/search/all_5.js | 11 inst/doxygen/html/search/all_6.js | 2 inst/doxygen/html/search/all_7.js | 2 inst/doxygen/html/search/all_8.js | 4 inst/doxygen/html/search/all_9.js | 42 inst/doxygen/html/search/all_a.js | 2 inst/doxygen/html/search/all_b.js | 10 inst/doxygen/html/search/all_c.js | 19 inst/doxygen/html/search/all_d.js | 34 inst/doxygen/html/search/all_e.js | 4 inst/doxygen/html/search/all_f.js | 6 inst/doxygen/html/search/classes_0.js | 2 inst/doxygen/html/search/classes_1.js | 6 inst/doxygen/html/search/classes_2.js | 3 inst/doxygen/html/search/classes_3.js | 2 inst/doxygen/html/search/classes_4.js | 4 inst/doxygen/html/search/classes_5.js | 2 inst/doxygen/html/search/classes_6.js | 2 inst/doxygen/html/search/classes_7.js | 2 inst/doxygen/html/search/classes_8.js | 4 inst/doxygen/html/search/classes_9.js | 2 inst/doxygen/html/search/functions_0.js | 3 inst/doxygen/html/search/functions_1.js | 8 inst/doxygen/html/search/functions_10.js | 18 inst/doxygen/html/search/functions_11.js | 10 inst/doxygen/html/search/functions_12.js | 6 inst/doxygen/html/search/functions_13.js | 4 inst/doxygen/html/search/functions_14.js | 2 inst/doxygen/html/search/functions_15.js | 4 inst/doxygen/html/search/functions_2.js | 11 inst/doxygen/html/search/functions_3.js | 15 inst/doxygen/html/search/functions_4.js | 8 inst/doxygen/html/search/functions_5.js | 2 inst/doxygen/html/search/functions_6.js | 2 inst/doxygen/html/search/functions_7.js | 2 inst/doxygen/html/search/functions_8.js | 36 inst/doxygen/html/search/functions_9.js | 2 inst/doxygen/html/search/functions_a.js | 6 inst/doxygen/html/search/functions_b.js | 17 inst/doxygen/html/search/functions_c.js | 32 inst/doxygen/html/search/functions_d.js | 4 inst/doxygen/html/search/functions_e.js | 4 inst/doxygen/html/search/functions_f.js | 15 inst/doxygen/html/search/pages_0.js | 2 inst/doxygen/html/search/pages_1.js | 2 inst/doxygen/html/search/typedefs_0.js | 2 inst/doxygen/html/search/typedefs_1.js | 2 inst/doxygen/html/search/typedefs_2.js | 2 inst/doxygen/html/search/variables_0.js | 4 inst/doxygen/html/search/variables_1.js | 4 inst/doxygen/html/search/variables_2.js | 3 inst/doxygen/html/search/variables_3.js | 2 inst/doxygen/html/search/variables_4.js | 6 inst/doxygen/html/search/variables_5.js | 2 inst/doxygen/html/search/variables_6.js | 2 inst/doxygen/html/search/variables_7.js | 2 inst/doxygen/html/search/variables_8.js | 2 inst/doxygen/html/search/variables_9.js | 2 inst/include/RNifti/NiftiImage.h | 218 ++ inst/include/RNifti/NiftiImage_impl.h | 35 inst/include/niftilib/nifti1_io.h | 5 inst/include/niftilib/nifti2_io.h | 5 man/ExtensionCodes.Rd |only man/extensions.Rd |only src/main.cpp | 87 + tests/testthat/test-05-nifti.R | 2 tests/testthat/test-08-composite.R | 2 tests/testthat/test-10-xform.R | 2 tests/testthat/test-12-viewer.R | 2 tests/testthat/test-15-foreign.R | 2 tests/testthat/test-20-extensions.R |only 101 files changed, 2712 insertions(+), 1743 deletions(-)
Title: Estimation of Meiotic Recombination Rates Using Marey Maps
Description: Local recombination rates are graphically estimated across a genome using Marey maps.
Author: Aurélie Siberchicot, Clément Rezvoy, Delphine Charif, Laurent Gueguen and Gabriel Marais
Maintainer: Aurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Diff between MareyMap versions 1.3.5 dated 2020-05-21 and 1.3.6 dated 2020-12-04
MareyMap-1.3.5/MareyMap/vignettes/vignette-concordance.tex |only MareyMap-1.3.6/MareyMap/DESCRIPTION | 10 +++--- MareyMap-1.3.6/MareyMap/MD5 | 17 +++++------ MareyMap-1.3.6/MareyMap/NAMESPACE | 6 --- MareyMap-1.3.6/MareyMap/R/PlotArea.R | 20 +++++++------ MareyMap-1.3.6/MareyMap/build/vignette.rds |binary MareyMap-1.3.6/MareyMap/inst/doc/vignette.Rnw | 2 - MareyMap-1.3.6/MareyMap/inst/doc/vignette.pdf |binary MareyMap-1.3.6/MareyMap/man/Caenorhabditis_elegans.Rd | 2 - MareyMap-1.3.6/MareyMap/vignettes/vignette.Rnw | 2 - 10 files changed, 29 insertions(+), 30 deletions(-)
Title: Extract Variables from HILDA
Description: Makes it easy to extract and combine variables from the HILDA (Household, Income and Labour Dynamics in Australia) survey maintained by the Melbourne Institute <https://melbourneinstitute.unimelb.edu.au/hilda>.
Author: Sebastian Kalucza [aut, cre],
Sara Kalucza [aut]
Maintainer: Sebastian Kalucza <sebastian.kalucza@gmail.com>
Diff between hildareadR versions 0.1.0 dated 2020-01-18 and 0.2.0 dated 2020-12-04
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/read_hilda.R | 43 ++++++++++++++++++------------------------- man/hildareadR.Rd | 2 +- man/read_hilda.Rd | 12 +++++++----- 5 files changed, 34 insertions(+), 39 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-29 0.5.1
2020-01-10 0.5.0
2019-04-06 0.4.0
2018-10-12 0.3.0
2018-05-11 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-07-13 1.0.3
2020-05-13 1.0.2
2020-04-03 1.0.0
2020-04-03 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-23 1.1.3
2019-06-20 1.0.8
2018-04-20 1.0.4
2017-03-05 1.0.3
2017-02-26 1.0.2
Title: Collection of Machine Learning Data Sets for 'mlr3'
Description: A small collection of interesting and educational
machine learning data sets which are used as examples in the 'mlr3'
book (<https://mlr3book.mlr-org.com>), the use case gallery
(<https://mlr3gallery.mlr-org.com>), or in other examples. All data
sets are properly preprocessed and ready to be analyzed by most
machine learning algorithms. Data sets are automatically added to the
dictionary of tasks if 'mlr3' is loaded.
Author: Michel Lang [cre, aut] (<https://orcid.org/0000-0001-9754-0393>)
Maintainer: Michel Lang <michellang@gmail.com>
Diff between mlr3data versions 0.2.1 dated 2020-10-05 and 0.3.0 dated 2020-12-04
DESCRIPTION | 6 +++--- MD5 | 22 ++++++++++++++-------- NEWS.md | 4 ++++ R/bibentries.R | 5 +++++ R/moneyball.R |only R/optdigits.R |only R/penguins.R | 2 +- R/zzz.R | 2 ++ README.md | 4 +++- build/partial.rdb |binary data/moneyball.rda |only data/optdigits.rda |only man/moneyball.Rd |only man/optdigits.Rd |only tests/test_data_sets.R | 11 +++++++++++ 15 files changed, 43 insertions(+), 13 deletions(-)
Title: Compute Chi-Square Measures with Corrections
Description: Chi-square tests are computed with corrections.
Author: Aurélie Siberchicot, Eléonore Hellard, Dominique Pontier, David Fouchet and Franck Sauvage
Maintainer: Aurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Diff between Interatrix versions 1.1.1 dated 2015-07-03 and 1.1.3 dated 2020-12-04
Interatrix-1.1.1/Interatrix/man/Interatrix-package.Rd |only Interatrix-1.1.3/Interatrix/DESCRIPTION | 9 ++++----- Interatrix-1.1.3/Interatrix/MD5 | 18 +++++++++--------- Interatrix-1.1.3/Interatrix/NAMESPACE | 9 ++------- Interatrix-1.1.3/Interatrix/R/chi2CorrAgeGUI.R | 4 +++- Interatrix-1.1.3/Interatrix/R/chi2CorrGUI.R | 6 ++++-- Interatrix-1.1.3/Interatrix/README.md |only Interatrix-1.1.3/Interatrix/build/vignette.rds |binary Interatrix-1.1.3/Interatrix/inst/doc/Interatrix.Rnw | 4 ++-- Interatrix-1.1.3/Interatrix/inst/doc/Interatrix.pdf |binary Interatrix-1.1.3/Interatrix/vignettes/Interatrix.Rnw | 4 ++-- 11 files changed, 26 insertions(+), 28 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-07-08 2.8-5.1
2019-12-17 2.8-5
2019-12-11 2.8-4
2019-03-27 2.8-3
2019-03-26 2.8-2.1
2018-08-22 2.8-2
2018-06-28 2.8
2018-06-18 2.7-2383
2018-02-16 2.6-2291
2016-04-18 2.5-1998
2016-04-11 2.5-1968
2015-10-26 2.4-1788
2015-10-21 2.4-1786
2015-05-26 2.3-1709
2015-04-13 2.2-1699
2015-03-11 2.1-1640
2015-03-05 2.1-1629
2015-03-02 2.1-1620
2015-02-10 2.0-1570
2014-12-25 1.8-1441
2014-12-15 1.7-1416
2014-10-10 1.7-1404
2014-10-09 1.7-1401
2014-03-13 1.7-1289
2014-03-09 1.7-1286
2014-03-07 1.7-1282
2014-01-23 1.6-1188
2014-01-03 1.6-1180
2013-12-06 1.6-1163
2013-12-03 1.6-1161
2013-11-12 1.5-1118
2013-10-28 1.5-1107
2013-08-05 1.5-1045
2013-06-12 1.5-1026
2013-05-07 1.4-963
2013-04-03 1.4-941
2013-01-16 1.4-771
2011-12-07 1.4-731
2011-11-29 1.4-729
2011-11-23 1.4-726
2011-11-21 1.4-723
2011-10-11 1.4-709
2011-09-28 1.4-708
2011-09-27 1.4-702
2011-09-24 1.4-695
2011-09-22 1.4-681
2011-09-11 1.4-670
2011-09-01 1.4-653
2011-08-30 1.4-641
2011-04-24 1.3-572
2011-04-08 1.3-512
2011-03-30 1.2-452
2011-03-27 1.2-444
2011-03-16 1.1-434
2011-03-11 1.1-427
2011-03-10 1.0-418
Title: Easily Create Presentation-Ready Rich Text Format (RTF) Table
and Figure
Description: Create presentation-ready Rich Text Format (RTF) table and figure with flexible and customized format.
Author: Yilong Zhang [aut, cre],
Siruo Wang [aut],
Simiao Ye [aut],
Madhusudhan Ginnaram [aut],
Merck Sharp & Dohme Corp [cph]
Maintainer: Yilong Zhang <yilong.zhang@merck.com>
Diff between r2rtf versions 0.1.1 dated 2020-04-03 and 0.2.0 dated 2020-12-04
r2rtf-0.1.1/r2rtf/R/add_attributes.R |only r2rtf-0.1.1/r2rtf/R/add_features.R |only r2rtf-0.1.1/r2rtf/R/add_figure.R |only r2rtf-0.1.1/r2rtf/R/add_paragraph.R |only r2rtf-0.1.1/r2rtf/inst |only r2rtf-0.1.1/r2rtf/tests/testthat/test-convert_latex.R |only r2rtf-0.2.0/r2rtf/DESCRIPTION | 18 r2rtf-0.2.0/r2rtf/MD5 | 204 +++-- r2rtf-0.2.0/r2rtf/NAMESPACE | 26 r2rtf-0.2.0/r2rtf/NEWS.md | 33 r2rtf-0.2.0/r2rtf/R/as_rtf_pageby.R |only r2rtf-0.2.0/r2rtf/R/as_rtf_paragraph.R |only r2rtf-0.2.0/r2rtf/R/as_rtf_table.R |only r2rtf-0.2.0/r2rtf/R/check_args.R |only r2rtf-0.2.0/r2rtf/R/content_create.R |only r2rtf-0.2.0/r2rtf/R/conversion.R |only r2rtf-0.2.0/r2rtf/R/data.R | 180 ++-- r2rtf-0.2.0/r2rtf/R/dictionary.R | 286 ++++--- r2rtf-0.2.0/r2rtf/R/footnote_source_space.R |only r2rtf-0.2.0/r2rtf/R/match_arg.R |only r2rtf-0.2.0/r2rtf/R/obj_rtf_border.R |only r2rtf-0.2.0/r2rtf/R/obj_rtf_text.R |only r2rtf-0.2.0/r2rtf/R/rtf_body.R |only r2rtf-0.2.0/r2rtf/R/rtf_colheader.R |only r2rtf-0.2.0/r2rtf/R/rtf_encode.R |only r2rtf-0.2.0/r2rtf/R/rtf_encode_figure.R |only r2rtf-0.2.0/r2rtf/R/rtf_encode_list.R |only r2rtf-0.2.0/r2rtf/R/rtf_encode_table.R |only r2rtf-0.2.0/r2rtf/R/rtf_figure.R |only r2rtf-0.2.0/r2rtf/R/rtf_footnote.R |only r2rtf-0.2.0/r2rtf/R/rtf_group_by_enhance.R |only r2rtf-0.2.0/r2rtf/R/rtf_page.R |only r2rtf-0.2.0/r2rtf/R/rtf_pageby.R |only r2rtf-0.2.0/r2rtf/R/rtf_paragraph.R |only r2rtf-0.2.0/r2rtf/R/rtf_read_png.R |only r2rtf-0.2.0/r2rtf/R/rtf_source.R |only r2rtf-0.2.0/r2rtf/R/rtf_table_content.R |only r2rtf-0.2.0/r2rtf/R/rtf_text.R |only r2rtf-0.2.0/r2rtf/R/rtf_title.R |only r2rtf-0.2.0/r2rtf/R/set_margin.R |only r2rtf-0.2.0/r2rtf/R/write_rtf.R | 392 +--------- r2rtf-0.2.0/r2rtf/R/zzz.R | 36 r2rtf-0.2.0/r2rtf/README.md | 92 +- r2rtf-0.2.0/r2rtf/data/HAMD17.rda |binary r2rtf-0.2.0/r2rtf/data/adae.rda |binary r2rtf-0.2.0/r2rtf/data/adsl.rda |binary r2rtf-0.2.0/r2rtf/data/tbl_1.rda |binary r2rtf-0.2.0/r2rtf/data/tbl_2.rda |binary r2rtf-0.2.0/r2rtf/data/tbl_3.rda |binary r2rtf-0.2.0/r2rtf/man/HAMD17.Rd | 4 r2rtf-0.2.0/r2rtf/man/adae.Rd | 8 r2rtf-0.2.0/r2rtf/man/adsl.Rd | 8 r2rtf-0.2.0/r2rtf/man/as_rtf_colheader.Rd |only r2rtf-0.2.0/r2rtf/man/as_rtf_color.Rd |only r2rtf-0.2.0/r2rtf/man/as_rtf_end.Rd |only r2rtf-0.2.0/r2rtf/man/as_rtf_font.Rd |only r2rtf-0.2.0/r2rtf/man/as_rtf_footnote.Rd |only r2rtf-0.2.0/r2rtf/man/as_rtf_init.Rd |only r2rtf-0.2.0/r2rtf/man/as_rtf_margin.Rd |only r2rtf-0.2.0/r2rtf/man/as_rtf_new_page.Rd |only r2rtf-0.2.0/r2rtf/man/as_rtf_page.Rd |only r2rtf-0.2.0/r2rtf/man/as_rtf_pageby.Rd |only r2rtf-0.2.0/r2rtf/man/as_rtf_paragraph.Rd |only r2rtf-0.2.0/r2rtf/man/as_rtf_source.Rd |only r2rtf-0.2.0/r2rtf/man/as_rtf_subline.Rd |only r2rtf-0.2.0/r2rtf/man/as_rtf_table.Rd |only r2rtf-0.2.0/r2rtf/man/as_rtf_title.Rd |only r2rtf-0.2.0/r2rtf/man/border_type.Rd |only r2rtf-0.2.0/r2rtf/man/cell_size.Rd |only r2rtf-0.2.0/r2rtf/man/check_args.Rd |only r2rtf-0.2.0/r2rtf/man/color_table.Rd |only r2rtf-0.2.0/r2rtf/man/convert.Rd |only r2rtf-0.2.0/r2rtf/man/font_format.Rd |only r2rtf-0.2.0/r2rtf/man/font_type.Rd |only r2rtf-0.2.0/r2rtf/man/footnote_source_space.Rd |only r2rtf-0.2.0/r2rtf/man/inch_to_twip.Rd |only r2rtf-0.2.0/r2rtf/man/justification.Rd |only r2rtf-0.2.0/r2rtf/man/match_arg.Rd |only r2rtf-0.2.0/r2rtf/man/obj_rtf_border.Rd |only r2rtf-0.2.0/r2rtf/man/obj_rtf_text.Rd |only r2rtf-0.2.0/r2rtf/man/rtf_body.Rd | 208 ++++- r2rtf-0.2.0/r2rtf/man/rtf_colheader.Rd | 149 ++- r2rtf-0.2.0/r2rtf/man/rtf_encode.Rd | 106 +- r2rtf-0.2.0/r2rtf/man/rtf_encode_figure.Rd |only r2rtf-0.2.0/r2rtf/man/rtf_encode_list.Rd |only r2rtf-0.2.0/r2rtf/man/rtf_encode_table.Rd |only r2rtf-0.2.0/r2rtf/man/rtf_figure.Rd | 54 - 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Title: Tools for Inference in the Presence of a Monotone Likelihood
Description: Proportional hazards estimation in the presence of a partially monotone likelihood has difficulties, in that finite estimators do not exist. These difficulties are related to those arising from logistic and multinomial regression. References for methods are given in the separate function documents.
Author: John E. Kolassa and Juan Zhang
Maintainer: John E. Kolassa <kolassa@stat.rutgers.edu>
Diff between PHInfiniteEstimates versions 1.5 dated 2020-09-24 and 1.6 dated 2020-12-04
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/convertstoml.R | 13 +++++++------ R/newllk.R | 2 ++ build/partial.rdb |binary 5 files changed, 17 insertions(+), 14 deletions(-)
More information about PHInfiniteEstimates at CRAN
Permanent link
Title: Define and Work with Parameter Spaces for Complex Algorithms
Description: Define parameter spaces, constraints and
dependencies for arbitrary algorithms, to program on such spaces. Also
includes statistical designs and random samplers. Objects are
implemented as 'R6' classes.
Author: Michel Lang [cre, aut] (<https://orcid.org/0000-0001-9754-0393>),
Bernd Bischl [aut] (<https://orcid.org/0000-0001-6002-6980>),
Jakob Richter [aut] (<https://orcid.org/0000-0003-4481-5554>),
Xudong Sun [aut] (<https://orcid.org/0000-0003-3269-2307>),
Martin Binder [aut],
Marc Becker [ctb] (<https://orcid.org/0000-0002-8115-0400>)
Maintainer: Michel Lang <michellang@gmail.com>
Diff between paradox versions 0.5.0 dated 2020-10-21 and 0.6.0 dated 2020-12-04
DESCRIPTION | 14 ++- MD5 | 50 +++++++------ NAMESPACE | 13 +++ NEWS.md | 9 ++ R/Condition.R | 10 ++ R/Param.R | 6 + R/ParamDbl.R | 9 -- R/ParamFct.R | 1 R/ParamInt.R | 2 R/ParamSet.R | 71 +++++++++++++++++- R/ParamSetCollection.R | 2 R/ParamUty.R | 1 R/domain.R |only R/helper.R | 151 ++++++++++++++++++++++++++++++++++++++++ R/ps.R |only R/to_tune.R |only R/zzz.R | 3 man/Domain.Rd |only man/ParamSet.Rd | 28 +++++++ man/ParamSetCollection.Rd | 1 man/ps.Rd |only man/to_tune.Rd |only tests/testthat/test_Condition.R | 7 + tests/testthat/test_ParamDbl.R | 1 tests/testthat/test_ParamFct.R | 1 tests/testthat/test_ParamInt.R | 1 tests/testthat/test_ParamLgl.R | 1 tests/testthat/test_ParamUty.R | 1 tests/testthat/test_domain.R |only tests/testthat/test_to_tune.R |only 30 files changed, 337 insertions(+), 46 deletions(-)
Title: Automates the Creation of New Statistical Analysis Projects
Description: Provides functions to
automatically build a directory structure for a new R
project. Using this structure, 'ProjectTemplate'
automates data loading, preprocessing, library
importing and unit testing.
Author: Aleksandar Blagotic [ctb],
Diego Valle-Jones [ctb],
Jeffrey Breen [ctb],
Joakim Lundborg [ctb],
John Myles White [aut, cph],
Josh Bode [ctb],
Kenton White [ctb, cre],
Kirill Mueller [ctb],
Matteo Redaelli [ctb],
Noah Lorang [ctb],
Patrick Schalk [ctb],
Dominik Schneider [ctb],
Gerold Hepp [ctb]
Maintainer: Kenton White <jkentonwhite@gmail.com>
Diff between ProjectTemplate versions 0.9.2 dated 2020-05-11 and 0.9.3 dated 2020-12-04
DESCRIPTION | 16 +++++---- MD5 | 16 ++++----- NEWS.md | 7 ++++ R/cache.R | 2 - build/partial.rdb |binary inst/defaults/templates/full/config/global.dcf | 2 - inst/defaults/templates/minimal/config/global.dcf | 2 - tests/testthat/test-cache.R | 38 ++++++++++++++++++++++ tests/testthat/test-clear.R | 6 ++- 9 files changed, 69 insertions(+), 20 deletions(-)
More information about ProjectTemplate at CRAN
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Title: Model Based Clustering, Classification and Discriminant Analysis
Using the Mixture of Generalized Hyperbolic Distributions
Description: Carries out model-based clustering, classification and discriminant analysis using five different models. The models are all based on the generalized hyperbolic distribution. The first model 'MGHD' (Browne and McNicholas (2015) <doi:10.1002/cjs.11246>) is the classical mixture of generalized hyperbolic distributions. The 'MGHFA' (Tortora et al. (2016) <doi:10.1007/s11634-015-0204-z>) is the mixture of generalized hyperbolic factor analyzers for high dimensional data sets. The 'MSGHD'(Tortora et al. (2016) <arXiv:1403.2332v7>), mixture of multiple scaled generalized hyperbolic distributions. The 'cMSGHD' (Tortora et al. (2016) <arXiv:1403.2332v7>) is a 'MSGHD' with convex contour plots. The 'MCGHD' (Tortora et al. (2016) <arXiv:1403.2332v7>), mixture of coalesced generalized hyperbolic distributions is a new more flexible model.
Author: Cristina Tortora [aut, cre, cph], Aisha ElSherbiny [com], Ryan P. Browne [aut, cph], Brian C. Franczak [aut, cph], and Paul D. McNicholas [aut, cph], and Donald D. Amos [ctb].
Maintainer: Cristina Tortora <grikris1@gmail.com>
Diff between MixGHD versions 2.3.3 dated 2019-08-22 and 2.3.4 dated 2020-12-04
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/GHD.c | 6 +++++- 3 files changed, 11 insertions(+), 7 deletions(-)