Title: Efficient Leave-One-Out Cross-Validation and WAIC for Bayesian
Models
Description: Efficient approximate leave-one-out cross-validation (LOO)
for Bayesian models fit using Markov chain Monte Carlo, as
described in Vehtari, Gelman, and Gabry (2017)
<doi:10.1007/s11222-016-9696-4>.
The approximation uses Pareto smoothed importance sampling (PSIS),
a new procedure for regularizing importance weights.
As a byproduct of the calculations, we also obtain approximate
standard errors for estimated predictive errors and for the comparison
of predictive errors between models. The package also provides methods
for using stacking and other model weighting techniques to average
Bayesian predictive distributions.
Author: Aki Vehtari [aut],
Jonah Gabry [cre, aut],
Mans Magnusson [aut],
Yuling Yao [aut],
Paul-Christian Bürkner [aut],
Topi Paananen [aut],
Andrew Gelman [aut],
Ben Goodrich [ctb],
Juho Piironen [ctb],
Bruno Nicenboim [ctb]
Maintainer: Jonah Gabry <jsg2201@columbia.edu>
Diff between loo versions 2.4.0 dated 2020-12-04 and 2.4.1 dated 2020-12-09
loo-2.4.0/loo/inst/doc/elpd.R |only loo-2.4.0/loo/inst/doc/elpd.Rmd |only loo-2.4.0/loo/inst/doc/elpd.html |only loo-2.4.0/loo/inst/doc/large-data.R |only loo-2.4.0/loo/inst/doc/large-data.Rmd |only loo-2.4.0/loo/inst/doc/large-data.html |only loo-2.4.0/loo/inst/doc/lfo.R |only loo-2.4.0/loo/inst/doc/lfo.Rmd |only loo-2.4.0/loo/inst/doc/lfo.html |only loo-2.4.0/loo/inst/doc/loo-package.R |only loo-2.4.0/loo/inst/doc/loo-package.Rmd |only loo-2.4.0/loo/inst/doc/loo-package.html |only loo-2.4.0/loo/inst/doc/moment-matching.R |only loo-2.4.0/loo/inst/doc/moment-matching.Rmd |only loo-2.4.0/loo/inst/doc/moment-matching.html |only loo-2.4.0/loo/inst/doc/non-factorized.R |only loo-2.4.0/loo/inst/doc/non-factorized.Rmd |only loo-2.4.0/loo/inst/doc/non-factorized.html |only loo-2.4.0/loo/inst/doc/weights.R |only loo-2.4.0/loo/inst/doc/weights.Rmd |only loo-2.4.0/loo/inst/doc/weights.html |only loo-2.4.0/loo/inst/doc/writing-stan-programs.R |only loo-2.4.0/loo/inst/doc/writing-stan-programs.Rmd |only loo-2.4.0/loo/inst/doc/writing-stan-programs.html |only loo-2.4.0/loo/vignettes/elpd.Rmd |only loo-2.4.0/loo/vignettes/large-data.Rmd |only loo-2.4.0/loo/vignettes/lfo.Rmd |only loo-2.4.0/loo/vignettes/loo-package.Rmd |only loo-2.4.0/loo/vignettes/moment-matching.Rmd |only loo-2.4.0/loo/vignettes/non-factorized.Rmd |only loo-2.4.0/loo/vignettes/weights.Rmd |only loo-2.4.0/loo/vignettes/writing-stan-programs.Rmd |only loo-2.4.1/loo/DESCRIPTION | 8 +- loo-2.4.1/loo/MD5 | 70 +++++++++++----------- loo-2.4.1/loo/NEWS.md | 5 + loo-2.4.1/loo/build/vignette.rds |binary loo-2.4.1/loo/inst/doc/loo2-elpd.R |only loo-2.4.1/loo/inst/doc/loo2-elpd.Rmd |only loo-2.4.1/loo/inst/doc/loo2-elpd.html |only loo-2.4.1/loo/inst/doc/loo2-example.R |only loo-2.4.1/loo/inst/doc/loo2-example.Rmd |only loo-2.4.1/loo/inst/doc/loo2-example.html |only loo-2.4.1/loo/inst/doc/loo2-large-data.R |only loo-2.4.1/loo/inst/doc/loo2-large-data.Rmd |only loo-2.4.1/loo/inst/doc/loo2-large-data.html |only loo-2.4.1/loo/inst/doc/loo2-lfo.R |only loo-2.4.1/loo/inst/doc/loo2-lfo.Rmd |only loo-2.4.1/loo/inst/doc/loo2-lfo.html |only loo-2.4.1/loo/inst/doc/loo2-moment-matching.R |only loo-2.4.1/loo/inst/doc/loo2-moment-matching.Rmd |only loo-2.4.1/loo/inst/doc/loo2-moment-matching.html |only loo-2.4.1/loo/inst/doc/loo2-non-factorized.R |only loo-2.4.1/loo/inst/doc/loo2-non-factorized.Rmd |only loo-2.4.1/loo/inst/doc/loo2-non-factorized.html |only loo-2.4.1/loo/inst/doc/loo2-weights.R |only loo-2.4.1/loo/inst/doc/loo2-weights.Rmd |only loo-2.4.1/loo/inst/doc/loo2-weights.html |only loo-2.4.1/loo/inst/doc/loo2-with-rstan.R |only loo-2.4.1/loo/inst/doc/loo2-with-rstan.Rmd |only loo-2.4.1/loo/inst/doc/loo2-with-rstan.html |only loo-2.4.1/loo/vignettes/loo2-elpd.Rmd |only loo-2.4.1/loo/vignettes/loo2-example.Rmd |only loo-2.4.1/loo/vignettes/loo2-large-data.Rmd |only loo-2.4.1/loo/vignettes/loo2-lfo.Rmd |only loo-2.4.1/loo/vignettes/loo2-moment-matching.Rmd |only loo-2.4.1/loo/vignettes/loo2-non-factorized.Rmd |only loo-2.4.1/loo/vignettes/loo2-weights.Rmd |only loo-2.4.1/loo/vignettes/loo2-with-rstan.Rmd |only 68 files changed, 44 insertions(+), 39 deletions(-)
Title: Encrypt Html Reports Using 'Libsodium'
Description: Create encrypted html files that are fully self contained and do
not require any additional software. Using the package you can encrypt
arbitrary html files and also directly create encrypted 'rmarkdown' html reports.
Author: Dirk Schumacher [aut, cre, cph],
Jannis R. [aut, cph]
Maintainer: Dirk Schumacher <mail@dirk-schumacher.net>
Diff between encryptedRmd versions 0.2.0 dated 2020-05-08 and 0.2.1 dated 2020-12-09
DESCRIPTION | 18 ++++++++------ MD5 | 12 ++++----- NEWS.md | 5 ++++ README.md | 16 +++++-------- inst/COPYRIGHTS | 44 +++++++++++++++++++++++++++++++++++ inst/html-template.html | 4 +-- inst/html-template.js | 59 +++++++++++++++++++++++++++++++++++++++++++----- 7 files changed, 128 insertions(+), 30 deletions(-)
Title: The Integration Between 'IBM COGNOS TM1' and R
Description: Useful functions to connect to 'TM1' <https://www.ibm.com/uk-en/products/planning-and-analytics> instance from R via REST API. With the functions in the package, data can be imported from 'TM1' via mdx view or native view, data can be sent to 'TM1', processes and chores can be executed, and cube and dimension metadata information can be taken.
Author: Muhammed Ali Onder
Maintainer: Muhammed Ali Onder <muhammedalionder@gmail.com>
Diff between tm1r versions 1.1.7 dated 2020-11-30 and 1.1.8 dated 2020-12-09
DESCRIPTION | 6 - MD5 | 6 - R/tm1_create_element.R | 218 +++++++++++++++++++++++----------------------- man/tm1_create_element.Rd | 3 4 files changed, 119 insertions(+), 114 deletions(-)
Title: Magnetic Resonance Binning, Integration and Normalization
Description: Nuclear Magnetic Resonance is widely used in Life Science
research. The package (<http://www.kleinomicslab.com/software/>) converts 1D or 2D data into a matrix of values
suitable for further data analysis and performs basic processing steps in a
reproducible way. Negative values, a common issue in such data, are replaced
by positive values. All used parameters are stored in a readable text file
and can be restored from that file to enable exact reproduction of the data
at a later time.
Author: Matthias Klein [aut, cre] (<https://orcid.org/0000-0001-7455-5381>)
Maintainer: Matthias Klein <klein.663@osu.edu>
Diff between mrbin versions 1.4.3 dated 2020-09-25 and 1.4.4 dated 2020-12-09
DESCRIPTION | 8 +-- MD5 | 12 ++-- NEWS.md | 6 ++ R/mrbin.R | 133 +++++++++++++++++++++++++++++++++++++---------------- README.md | 2 inst/doc/mrbin.pdf |binary man/PQNScaling.Rd | 31 ++++++++++-- 7 files changed, 138 insertions(+), 54 deletions(-)
Title: High-Performance Stemmer, Tokenizer, and Spell Checker
Description: Low level spell checker and morphological analyzer based on the
famous 'hunspell' library <https://hunspell.github.io>. The package can analyze
or check individual words as well as parse text, latex, html or xml documents.
For a more user-friendly interface use the 'spelling' package which builds on
this package to automate checking of files, documentation and vignettes in all
common formats.
Author: Jeroen Ooms [aut, cre],
Authors of libhunspell [cph] (see AUTHORS file)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between hunspell versions 3.0 dated 2018-12-15 and 3.0.1 dated 2020-12-09
hunspell-3.0.1/hunspell/DESCRIPTION | 9 hunspell-3.0.1/hunspell/MD5 | 15 hunspell-3.0.1/hunspell/NEWS | 3 hunspell-3.0.1/hunspell/build/vignette.rds |binary hunspell-3.0.1/hunspell/inst/doc/intro.R | 39 hunspell-3.0.1/hunspell/inst/doc/intro.Rmd | 7 hunspell-3.0.1/hunspell/inst/doc/intro.html | 3677 +--------------------------- hunspell-3.0.1/hunspell/vignettes/intro.Rmd | 7 hunspell-3.0/hunspell/README.md |only 9 files changed, 182 insertions(+), 3575 deletions(-)
Title: A Collection of Statistical Tools for Biologists
Description: Contains functions from: Aho, K. (2014) Foundational and Applied Statistics for Biologists using R. CRC/Taylor and Francis, Boca Raton, FL, ISBN: 978-1-4398-7338-0.
Author: Ken Aho
Maintainer: Ken Aho <kenaho1@gmail.com>
Diff between asbio versions 1.6-5 dated 2020-06-29 and 1.6-7 dated 2020-12-09
DESCRIPTION | 16 ++++----- MD5 | 35 ++++++++++----------- NAMESPACE | 1 R/AP.test.R | 2 - R/anm.loglik.r | 76 ++++++++++++++++++++++++--------------------- R/see.pdfdriver.r | 4 +- R/see_discunifcdf.R |only R/selftest.regdiag.R | 10 +++--- R/selftestANOVAdesign.R | 10 +++--- R/selftest_ttest_tck.R | 2 - build/vignette.rds |binary inst/doc/ranef.cov.pdf |binary inst/doc/simpson.pdf |binary man/BCI.count.rd | 78 +++++++++++++++++++++++------------------------ man/BCI.plant.rd | 2 - man/pairw.kw.rd | 3 - man/samp.dist.mech.rd | 2 - man/see.cor.range.tck.rd | 3 - man/see.norm.tck.rd | 4 ++ 19 files changed, 128 insertions(+), 120 deletions(-)
Title: R Client for the COLOURlovers API
Description: Provides access to the COLOURlovers <https://www.colourlovers.com/>
API, which offers color inspiration and color palettes.
Author: Andrew Heiss [aut, cre] (<https://orcid.org/0000-0002-3948-3914>),
Thomas J. Leeper [aut] (<https://orcid.org/0000-0003-4097-6326>)
Maintainer: Andrew Heiss <andrew@andrewheiss.com>
Diff between colourlovers versions 0.3.5 dated 2019-05-01 and 0.3.6 dated 2020-12-09
DESCRIPTION | 12 ++++++------ MD5 | 18 +++++++++--------- README.md | 34 +++++++++++++++++----------------- tests/testthat/helper.R | 10 ++++++++-- tests/testthat/test-plots.R | 26 +++++++++++++------------- tools/README-barplot-grid-1.png |binary tools/README-pattern-1.png |binary tools/README-pattern-pie-1.png |binary tools/README-single-color-1.png |binary tools/README-single-palette-1.png |binary 10 files changed, 53 insertions(+), 47 deletions(-)
Title: Non-Interactive Spatial Tools for Raster Processing and
Visualization
Description: S3 classes and methods for manipulation with georeferenced raster data: reading/writing, processing, multi-panel visualization.
Author: Nikita Platonov [aut, cre] (<https://orcid.org/0000-0001-7196-7882>)
Maintainer: Nikita Platonov <platonov@sevin.ru>
Diff between ursa versions 3.9.1 dated 2020-11-11 and 3.9.2 dated 2020-12-09
DESCRIPTION | 10 ++++---- MD5 | 55 ++++++++++++++++++++++++------------------------ NAMESPACE | 3 ++ NEWS.md | 17 +++++++++++++- R/classRaster.R | 7 +++++- R/classRaster.Replace.R | 4 ++- R/classRaster_close.R | 28 ++++++++++++++++++++++++ R/classRaster_hist.R | 4 +-- R/compose_open.R | 47 +++++++++++++++++++++++++++++++---------- R/conn.open_envi.R | 11 ++++++--- R/cubehelix.R | 6 +++++ R/legend_colorbar.R | 53 +++++++++++++++++++++++++++++++++------------- R/legend_mtext.R | 2 - R/panel_annotation.R | 11 +++++---- R/panel_graticule.R | 16 ++++++++++--- R/panel_plot.R | 25 +++++++++++++++++++-- R/panel_scalebar.R | 20 +++++++++++++---- R/regrid.R | 22 ++++++++++++++++--- R/session.R | 30 +++++++++++++++++--------- R/spatial_engine.R | 32 +++++++++++++++++++++++++++ R/spatial_write.R | 13 ++++++++++- R/xxx.geomap.R | 3 +- R/xxx.isopleth.R |only R/xxx.spatialize.R | 33 +++++++++++++++++++++++----- R/yyy.cache.R | 2 + R/yyy.connection.R | 3 +- man/panel_annotation.Rd | 3 +- man/session.Rd | 5 ++-- man/spatial_engine.Rd | 18 +++++++++++++-- 29 files changed, 369 insertions(+), 114 deletions(-)
Title: Assessment of Regression Models Performance
Description: Utilities for computing measures to assess model quality,
which are not directly provided by R's 'base' or 'stats' packages. These
include e.g. measures like r-squared, intraclass correlation coefficient
(Nakagawa, Johnson & Schielzeth (2017) <doi:10.1098/rsif.2017.0213>),
root mean squared error or functions to check models for overdispersion,
singularity or zero-inflation and more. Functions apply to a large variety of
regression models, including generalized linear models, mixed effects models
and Bayesian models.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>),
Dominique Makowski [aut, ctb] (<https://orcid.org/0000-0001-5375-9967>),
Philip Waggoner [aut, ctb] (<https://orcid.org/0000-0002-7825-7573>),
Indrajeet Patil [aut, ctb] (<https://orcid.org/0000-0003-1995-6531>),
Mattan S. Ben-Shachar [aut, ctb]
(<https://orcid.org/0000-0002-4287-4801>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between performance versions 0.6.0 dated 2020-12-01 and 0.6.1 dated 2020-12-09
DESCRIPTION | 6 MD5 | 90 +++++----- NEWS.md | 10 + R/binned_residuals.R | 6 R/check_collinearity.R | 69 +++++-- R/check_heteroscedasticity.R | 6 R/check_homogeneity.R | 6 R/check_model.R | 4 R/check_normality.R | 6 R/check_outliers.R | 7 R/compare_performance.R | 36 +++- R/model_performance.bayesian.R | 4 R/print-methods.R | 38 ---- R/r2_bayes.R | 2 R/r2_efron.R | 86 ++++----- README.md | 55 +++--- build/partial.rdb |binary man/binned_residuals.Rd | 6 man/check_collinearity.Rd | 203 ++++++++++++----------- man/check_distribution.Rd | 104 +++++------ man/check_heteroscedasticity.Rd | 6 man/check_homogeneity.Rd | 82 ++++----- man/check_model.Rd | 12 + man/check_normality.Rd | 6 man/check_outliers.Rd | 7 man/check_singularity.Rd | 162 +++++++++--------- man/compare_performance.Rd | 14 + man/cronbachs_alpha.Rd | 72 ++++---- man/display.performance_model.Rd | 88 ++++----- man/figures/unnamed-chunk-19-1.png |binary man/looic.Rd | 52 ++--- man/model_performance.merMod.Rd | 74 ++++---- man/model_performance.stanreg.Rd | 4 man/performance_mse.Rd | 68 +++---- man/performance_roc.Rd | 110 ++++++------ man/pp_check.Rd | 172 +++++++++---------- man/r2.Rd | 108 ++++++------ man/r2_bayes.Rd | 2 man/r2_loo.Rd | 60 +++--- man/r2_somers.Rd | 54 +++--- man/reexports.Rd | 34 +-- tests/testthat/test-backticks.R | 5 tests/testthat/test-check_collinearity.R | 2 tests/testthat/test-compare_performance.R | 2 tests/testthat/test-model_performance.bayesian.R | 2 tests/testthat/test-r2_bayes.R | 2 46 files changed, 1016 insertions(+), 928 deletions(-)
Title: Interface Between R and the OpenStreetMap-Based Routing Service
OSRM
Description: An interface between R and the 'OSRM' API. 'OSRM' is a routing
service based on 'OpenStreetMap' data. See <http://project-osrm.org/> for more
information. This package allows to compute routes, trips, isochrones and
travel distances matrices (travel time and kilometric distance).
Author: Timothée Giraud [cre, aut] (<https://orcid.org/0000-0002-1932-3323>),
Robin Cura [ctb],
Matthieu Viry [ctb],
Robin Lovelace [ctb] (<https://orcid.org/0000-0001-5679-6536>)
Maintainer: Timothée Giraud <timothee.giraud@cnrs.fr>
Diff between osrm versions 3.3.3 dated 2020-04-14 and 3.4.0 dated 2020-12-09
DESCRIPTION | 26 ++++--- MD5 | 41 +++++++----- NAMESPACE | 1 NEWS | 9 ++ R/osrmIsochrone.R | 99 +++++++++++++++++++----------- R/osrmRoute.R | 45 +++++++++++-- R/osrmTable.R | 41 +++++++++--- R/osrmTrip.R | 17 ++++- R/package.R | 14 +--- R/utils.R | 13 ++- R/zzz.R | 2 README.md | 167 +++++++++++++++++++++++++++------------------------ inst/forReadme.R | 5 - inst/tinytest |only man/osrm.Rd | 14 +--- man/osrmIsochrone.Rd | 11 +++ man/osrmIsometric.Rd | 11 +++ man/osrmRoute.Rd | 28 ++++++++ man/osrmTable.Rd | 11 +++ man/osrmTrip.Rd | 16 ++++ tests |only 21 files changed, 380 insertions(+), 191 deletions(-)
Title: A Simple and Robust JSON Parser and Generator for R
Description: A reasonably fast JSON parser and generator, optimized for statistical
data and the web. Offers simple, flexible tools for working with JSON in R, and
is particularly powerful for building pipelines and interacting with a web API.
The implementation is based on the mapping described in the vignette (Ooms, 2014).
In addition to converting JSON data from/to R objects, 'jsonlite' contains
functions to stream, validate, and prettify JSON data. The unit tests included
with the package verify that all edge cases are encoded and decoded consistently
for use with dynamic data in systems and applications.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>),
Duncan Temple Lang [ctb],
Lloyd Hilaiel [cph] (author of bundled libyajl)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between jsonlite versions 1.7.1 dated 2020-09-07 and 1.7.2 dated 2020-12-09
jsonlite-1.7.1/jsonlite/tests/testthat/testS4.R |only jsonlite-1.7.2/jsonlite/DESCRIPTION | 8 jsonlite-1.7.2/jsonlite/MD5 | 25 jsonlite-1.7.2/jsonlite/NEWS | 4 jsonlite-1.7.2/jsonlite/R/asJSON.raw.R | 8 jsonlite-1.7.2/jsonlite/R/base64.R | 2 jsonlite-1.7.2/jsonlite/R/stream.R | 2 jsonlite-1.7.2/jsonlite/build/vignette.rds |binary jsonlite-1.7.2/jsonlite/inst/doc/json-aaquickstart.html | 662 +++------- jsonlite-1.7.2/jsonlite/inst/doc/json-apis.html | 650 +++------ jsonlite-1.7.2/jsonlite/inst/doc/json-mapping.pdf |binary jsonlite-1.7.2/jsonlite/inst/doc/json-paging.html | 597 +++------ jsonlite-1.7.2/jsonlite/man/stream_in.Rd | 2 jsonlite-1.7.2/jsonlite/tests/testthat/test-serializeJSON-functions.R | 22 14 files changed, 712 insertions(+), 1270 deletions(-)
Title: Estimated Marginal Means, aka Least-Squares Means
Description: Obtain estimated marginal means (EMMs) for many linear, generalized
linear, and mixed models. Compute contrasts or linear functions of EMMs,
trends, and comparisons of slopes. Plots and other displays.
Least-squares means are discussed, and the term "estimated marginal means"
is suggested, in Searle, Speed, and Milliken (1980) Population marginal means
in the linear model: An alternative to least squares means, The American
Statistician 34(4), 216-221 <doi:10.1080/00031305.1980.10483031>.
Author: Russell V. Lenth [aut, cre, cph],
Paul Buerkner [ctb],
Maxime Herve [ctb],
Jonathon Love [ctb],
Hannes Riebl [ctb],
Henrik Singmann [ctb]
Maintainer: Russell V. Lenth <russell-lenth@uiowa.edu>
Diff between emmeans versions 1.5.2-1 dated 2020-10-25 and 1.5.3 dated 2020-12-09
DESCRIPTION | 24 +-- MD5 | 99 +++++++-------- NAMESPACE | 5 NEWS.md | 33 +++++ R/0nly-internal.R | 7 + R/cld-emm.R | 69 ++++++---- R/contrast.R | 6 R/emm-contr.R | 2 R/emm-list.R | 17 ++ R/emmGrid-methods.R | 174 ++++++++++++++++++++++++++- R/emmeans.R | 13 +- R/emmip.R | 236 +++++++++++++++++++++++-------------- R/emtrends.R | 2 R/helpers.R | 38 ----- R/interfacing.R | 13 +- R/nested.R | 66 ++++++---- R/ordinal-support.R | 9 + R/plot.emm.R | 3 R/rbind.R | 28 ++-- R/transformations.R | 4 build/vignette.rds |binary inst/doc/FAQs.html | 8 - inst/doc/basics.html | 4 inst/doc/comparisons.html | 8 - inst/doc/confidence-intervals.html | 14 +- inst/doc/interactions.html | 20 +-- inst/doc/messy-data.html | 4 inst/doc/models.html | 4 inst/doc/predictions.html | 4 inst/doc/sophisticated.R | 18 ++ inst/doc/sophisticated.Rmd | 39 ++++-- inst/doc/sophisticated.html | 115 +++++++++++------- inst/doc/transformations.html | 4 inst/doc/utilities.html | 10 - inst/doc/vignette-topics.Rmd | 6 inst/doc/vignette-topics.html | 12 + inst/doc/xplanations.html | 4 inst/doc/xtending.Rmd | 12 + inst/doc/xtending.html | 14 +- inst/extdata/cbpppriorrglist |only inst/extdata/cbpprglist |binary inst/extdata/cbppsigma |binary man/CLD.emmGrid.Rd | 10 - man/emmip.Rd | 78 +++++++++--- man/extending-emmeans.Rd | 12 + man/make.tran.Rd | 2 man/rbind.emmGrid.Rd | 22 ++- man/update.emmGrid.Rd | 44 ++++++ vignettes/sophisticated.Rmd | 39 ++++-- vignettes/vignette-topics.Rmd | 6 vignettes/xtending.Rmd | 12 + 51 files changed, 959 insertions(+), 414 deletions(-)
Title: Two-Steps Benchmarks for Time Series Disaggregation
Description: The twoStepsBenchmark() function and its wrappers allow you to disaggregate a low frequency time serie with time series of higher frequency, using the French National Accounts methodology.
The aggregated sum of the resulting time-serie is strictly equal to the low-frequency serie within the benchmarking window.
Typically, the low frequency serie is an annual one, unknown for the last year, and the high frequency is either quarterly or mensual.
See "Methodology of quarterly national accounts", Insee Méthodes N°126, by Insee (2012, ISBN:978-2-11-068613-8).
Author: Arnaud Feldmann [aut, cre],
Institut national de la statistique et des études économiques [cph]
(https://www.insee.fr/)
Maintainer: Arnaud Feldmann <arnaud.feldmann@insee.fr>
Diff between disaggR versions 0.1.9 dated 2020-10-11 and 0.1.11 dated 2020-12-09
disaggR-0.1.11/disaggR/DESCRIPTION | 27 disaggR-0.1.11/disaggR/LICENSE |only disaggR-0.1.11/disaggR/MD5 | 43 disaggR-0.1.11/disaggR/R/data.R | 40 disaggR-0.1.11/disaggR/README.md | 9 disaggR-0.1.11/disaggR/man/construction.Rd | 40 disaggR-0.1.11/disaggR/man/disaggR-package.Rd | 11 disaggR-0.1.11/disaggR/man/turnover.Rd | 40 disaggR-0.1.11/disaggR/tests/figs/deps.txt | 6 disaggR-0.1.11/disaggR/tests/figs/plots-r-4-0 |only disaggR-0.1.11/disaggR/tests/figs/plots-r-4-1 |only disaggR-0.1.11/disaggR/tests/testthat.R | 8 disaggR-0.1.11/disaggR/tests/testthat/outputs/benchmark.txt | 106 - disaggR-0.1.11/disaggR/tests/testthat/outputs/prais.txt | 18 disaggR-0.1.11/disaggR/tests/testthat/outputs/summary-prais.txt | 48 disaggR-0.1.11/disaggR/tests/testthat/test-methods.R | 122 - disaggR-0.1.11/disaggR/tests/testthat/test-plot.R | 6 disaggR-0.1.11/disaggR/tests/testthat/test-praislm.R | 36 disaggR-0.1.11/disaggR/tests/testthat/test-twoStepsBenchmark.R | 806 +++++----- disaggR-0.1.9/disaggR/tests/figs/ggplot |only disaggR-0.1.9/disaggR/tests/figs/plot |only 21 files changed, 696 insertions(+), 670 deletions(-)
Title: Generate Descriptive Statistics
Description: Generate descriptive statistics such as measures of location,
dispersion, frequency tables, cross tables, group summaries and multiple
one/two way tables.
Author: Aravind Hebbali [aut, cre] (<https://orcid.org/0000-0001-9220-9669>)
Maintainer: Aravind Hebbali <hebbali.aravind@gmail.com>
Diff between descriptr versions 0.5.1 dated 2020-02-01 and 0.5.2 dated 2020-12-09
descriptr-0.5.1/descriptr/R/dist-binomial.R |only descriptr-0.5.1/descriptr/R/dist-chisquare.R |only descriptr-0.5.1/descriptr/R/dist-f.R |only descriptr-0.5.1/descriptr/R/dist-normal.R |only descriptr-0.5.1/descriptr/R/dist-t.R |only descriptr-0.5.1/descriptr/inst/doc/tests_and_coverage.R |only descriptr-0.5.1/descriptr/inst/doc/tests_and_coverage.Rmd |only descriptr-0.5.1/descriptr/inst/doc/tests_and_coverage.html |only descriptr-0.5.1/descriptr/man/dist_binom_plot.Rd |only descriptr-0.5.1/descriptr/man/dist_chi_plot.Rd |only descriptr-0.5.1/descriptr/man/dist_f_plot.Rd |only descriptr-0.5.1/descriptr/man/dist_norm_plot.Rd |only descriptr-0.5.1/descriptr/man/dist_t.Rd |only descriptr-0.5.1/descriptr/tests/testthat/test-binom-dist.R |only descriptr-0.5.1/descriptr/tests/testthat/test-chi-dist.R |only descriptr-0.5.1/descriptr/tests/testthat/test-f-dist.R |only descriptr-0.5.1/descriptr/tests/testthat/test-normal-dist.R |only descriptr-0.5.1/descriptr/tests/testthat/test-t-dist.R |only descriptr-0.5.1/descriptr/vignettes/tests_and_coverage.Rmd |only descriptr-0.5.2/descriptr/DESCRIPTION | 17 descriptr-0.5.2/descriptr/MD5 | 129 - descriptr-0.5.2/descriptr/NAMESPACE | 16 descriptr-0.5.2/descriptr/NEWS.md | 27 descriptr-0.5.2/descriptr/R/ds-auto-summary.R | 11 descriptr-0.5.2/descriptr/R/ds-cross-table.R | 6 descriptr-0.5.2/descriptr/R/ds-data-hsb.R | 2 descriptr-0.5.2/descriptr/R/ds-describe.R | 230 +- descriptr-0.5.2/descriptr/R/ds-group-summary-interact.R | 20 descriptr-0.5.2/descriptr/R/ds-group-summary.R | 2 descriptr-0.5.2/descriptr/R/ds-launch-shiny-app.R | 4 descriptr-0.5.2/descriptr/R/ds-multistats.R | 2 descriptr-0.5.2/descriptr/R/ds-plots.R | 16 descriptr-0.5.2/descriptr/R/ds-screener.R | 80 descriptr-0.5.2/descriptr/R/ds-summary-stats.R | 82 descriptr-0.5.2/descriptr/R/ds-utils.R | 61 descriptr-0.5.2/descriptr/R/zzz.R | 11 descriptr-0.5.2/descriptr/README.md | 14 descriptr-0.5.2/descriptr/build/vignette.rds |binary descriptr-0.5.2/descriptr/inst/doc/categorical-data.R | 24 descriptr-0.5.2/descriptr/inst/doc/categorical-data.html | 579 +++-- descriptr-0.5.2/descriptr/inst/doc/continuous-data.R | 40 descriptr-0.5.2/descriptr/inst/doc/continuous-data.html | 1038 +++++----- descriptr-0.5.2/descriptr/inst/doc/visualization.R | 22 descriptr-0.5.2/descriptr/inst/doc/visualization.html | 151 + descriptr-0.5.2/descriptr/man/descriptr.Rd | 1 descriptr-0.5.2/descriptr/man/ds_cross_table.Rd | 3 descriptr-0.5.2/descriptr/man/ds_css.Rd | 14 descriptr-0.5.2/descriptr/man/ds_cvar.Rd | 11 descriptr-0.5.2/descriptr/man/ds_gmean.Rd | 17 descriptr-0.5.2/descriptr/man/ds_hmean.Rd | 17 descriptr-0.5.2/descriptr/man/ds_kurtosis.Rd | 14 descriptr-0.5.2/descriptr/man/ds_mdev.Rd | 10 descriptr-0.5.2/descriptr/man/ds_plot_histogram.Rd | 3 descriptr-0.5.2/descriptr/man/ds_range.Rd | 7 descriptr-0.5.2/descriptr/man/ds_rindex.Rd | 4 descriptr-0.5.2/descriptr/man/ds_screener.Rd | 5 descriptr-0.5.2/descriptr/man/ds_skewness.Rd | 14 descriptr-0.5.2/descriptr/man/ds_summary_stats.Rd | 2 descriptr-0.5.2/descriptr/man/hsb.Rd | 8 descriptr-0.5.2/descriptr/man/mtcarz.Rd | 4 descriptr-0.5.2/descriptr/tests/figs/deps.txt | 2 descriptr-0.5.2/descriptr/tests/figs/test-plots/ds-plot-bar-grouped-1.svg | 10 descriptr-0.5.2/descriptr/tests/figs/test-plots/ds-plot-bar-grouped-2.svg | 10 descriptr-0.5.2/descriptr/tests/figs/test-plots/ds-plot-bar-stacked-1.svg | 10 descriptr-0.5.2/descriptr/tests/figs/test-plots/ds-plot-bar-stacked-2.svg | 10 descriptr-0.5.2/descriptr/tests/figs/test-plots/ds-plot-density-1.svg | 105 - descriptr-0.5.2/descriptr/tests/figs/test-plots/ds-plot-density-2.svg | 97 descriptr-0.5.2/descriptr/tests/figs/test-plots/ds-plot-density-3.svg | 93 descriptr-0.5.2/descriptr/tests/figs/test-plots/ds-screener-1.svg |only descriptr-0.5.2/descriptr/tests/testthat/helper-utils.R |only descriptr-0.5.2/descriptr/tests/testthat/test-cross-table.R | 6 descriptr-0.5.2/descriptr/tests/testthat/test-describe.R | 40 descriptr-0.5.2/descriptr/tests/testthat/test-freq-table.R | 4 descriptr-0.5.2/descriptr/tests/testthat/test-group-summary-interact.R | 7 descriptr-0.5.2/descriptr/tests/testthat/test-group-summary.R | 2 descriptr-0.5.2/descriptr/tests/testthat/test-plots.R | 42 76 files changed, 1682 insertions(+), 1474 deletions(-)
Title: Spatial Position Models
Description: Computes spatial position models: Stewart potentials, Reilly
catchment areas, Huff catchment areas.
Author: Timothée Giraud [cre, aut] (<https://orcid.org/0000-0002-1932-3323>),
Hadrien Commenges [aut],
Joël Boulier [ctb]
Maintainer: Timothée Giraud <timothee.giraud@cnrs.fr>
Diff between SpatialPosition versions 2.0.1 dated 2020-04-14 and 2.1.0 dated 2020-12-09
SpatialPosition-2.0.1/SpatialPosition/R/rasterToContourPoly.R |only SpatialPosition-2.0.1/SpatialPosition/data/spatData.RData |only SpatialPosition-2.0.1/SpatialPosition/man/rasterToContourPoly.Rd |only SpatialPosition-2.1.0/SpatialPosition/DESCRIPTION | 17 +-- SpatialPosition-2.1.0/SpatialPosition/MD5 | 54 ++++------ SpatialPosition-2.1.0/SpatialPosition/NAMESPACE | 1 SpatialPosition-2.1.0/SpatialPosition/NEWS | 13 ++ SpatialPosition-2.1.0/SpatialPosition/R/gridandmat.R | 7 - SpatialPosition-2.1.0/SpatialPosition/R/huff.R | 11 +- SpatialPosition-2.1.0/SpatialPosition/R/mcStewart.R | 5 SpatialPosition-2.1.0/SpatialPosition/R/quickStewart.R | 8 - SpatialPosition-2.1.0/SpatialPosition/R/reilly.R | 8 - SpatialPosition-2.1.0/SpatialPosition/R/stewart.R | 15 +- SpatialPosition-2.1.0/SpatialPosition/R/zzz.R |only SpatialPosition-2.1.0/SpatialPosition/README.md | 6 - SpatialPosition-2.1.0/SpatialPosition/build/vignette.rds |binary SpatialPosition-2.1.0/SpatialPosition/inst/doc/SpatialPosition.R | 5 SpatialPosition-2.1.0/SpatialPosition/inst/doc/SpatialPosition.Rmd | 7 - SpatialPosition-2.1.0/SpatialPosition/inst/doc/SpatialPosition.html | 29 +++-- SpatialPosition-2.1.0/SpatialPosition/inst/doc/StewartExample.html | 32 +++++ SpatialPosition-2.1.0/SpatialPosition/man/CreateDistMatrix.Rd | 5 SpatialPosition-2.1.0/SpatialPosition/man/huff.Rd | 3 SpatialPosition-2.1.0/SpatialPosition/man/mcStewart.Rd | 5 SpatialPosition-2.1.0/SpatialPosition/man/plotHuff.Rd | 2 SpatialPosition-2.1.0/SpatialPosition/man/plotReilly.Rd | 2 SpatialPosition-2.1.0/SpatialPosition/man/plotStewart.Rd | 2 SpatialPosition-2.1.0/SpatialPosition/man/rasterHuff.Rd | 2 SpatialPosition-2.1.0/SpatialPosition/man/rasterReilly.Rd | 2 SpatialPosition-2.1.0/SpatialPosition/man/rasterStewart.Rd | 2 SpatialPosition-2.1.0/SpatialPosition/vignettes/SpatialPosition.Rmd | 7 - 30 files changed, 149 insertions(+), 101 deletions(-)
More information about SpatialPosition at CRAN
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Title: Piecewise Structural Equation Modeling
Description: Implements piecewise structural equation modeling from a single
list of structural equations, with new methods for non-linear, latent, and
composite variables, standardized coefficients, query-based prediction and
indirect effects. See <http://jslefche.github.io/piecewiseSEM/> for more.
Author: Jon Lefcheck [aut, cre],
Jarrett Byrnes [aut],
James Grace [aut]
Maintainer: Jon Lefcheck <lefcheckj@si.edu>
Diff between piecewiseSEM versions 2.1.0 dated 2019-12-05 and 2.1.2 dated 2020-12-09
DESCRIPTION | 15 MD5 | 186 +++++----- NAMESPACE | 5 NEWS.md | 8 R/coefs.R | 526 ++++++++++++++-------------- R/helpers.R | 64 ++- R/import.R | 5 R/multigroup.R | 12 R/piecewiseSEM-package.R | 4 R/psem.R | 10 R/rsquared.R | 55 +-- README.md | 4 build/vignette.rds |binary inst/doc/piecewiseSEM.html | 640 +++++++++++++++++++---------------- man/AIC.psem.Rd | 34 - man/BIC.psem.Rd | 30 - man/GetData.Rd | 22 - man/GetOLRE.Rd | 26 - man/GetSDx.Rd | 22 - man/GetSDy.Rd | 22 - man/GetSingleData.Rd | 22 - man/GetVarCov.Rd | 22 - man/all.vars.merMod.Rd | 22 - man/all.vars_notrans.Rd | 22 - man/all.vars_trans.Rd | 22 - man/anova.psem.Rd | 114 +++--- man/anovaLRT.Rd | 22 - man/anovaTable.Rd | 22 - man/as.psem.Rd | 30 - man/basisSet.Rd | 106 ++--- man/captureTable.Rd | 22 - man/cbind_fill.Rd | 30 - man/cerror.Rd | 148 ++++---- man/coefs.Rd | 208 +++++------ man/dSep.Rd | 130 +++---- man/dataTrans.Rd | 22 - man/dupOutput.Rd | 30 - man/evaluateClasses.Rd | 26 - man/filterExisting.Rd | 22 - man/filterExogenous.Rd | 22 - man/filterInteractions.Rd | 22 - man/findbars.lme.Rd | 22 - man/formatpsem.Rd | 22 - man/getAnova.Rd | 22 - man/getCoefficients.Rd | 22 - man/getDAG.Rd | 26 - man/getResidModels.Rd | 22 - man/get_response.Rd | 22 - man/grapes-twiddle-twiddle-grapes.Rd | 120 +++--- man/handleCategoricalCoefs.Rd | 38 +- man/isSig.Rd | 22 - man/keeley.Rd | 50 +- man/listFormula.Rd | 40 +- man/meadows.Rd | 42 +- man/multigroup.Rd | 92 ++--- man/nObs.Rd | 22 - man/onlyBars.Rd | 22 - man/partialCorr.Rd | 22 - man/partialResid.Rd | 114 +++--- man/piecewiseSEM-package.Rd | 106 ++--- man/plot.psem.Rd | 138 +++---- man/print.anova.psem.Rd | 30 - man/print.attr.Rd | 22 - man/print.basisSet.Rd | 30 - man/print.multigroup.psem.Rd | 30 - man/print.psem.Rd | 30 - man/print.summary.psem.Rd | 30 - man/psem.Rd | 96 ++--- man/removeCerror.Rd | 22 - man/removeData.Rd | 28 - man/resid.lme.Rd | 22 - man/residuals.psem.Rd | 36 - man/reverseAddVars.Rd | 34 - man/reverseNonLin.Rd | 22 - man/rsquared.Rd | 204 +++++------ man/rsquared.glm.Rd | 22 - man/rsquared.glmerMod.Rd | 22 - man/rsquared.glmmPQL.Rd | 22 - man/rsquared.gls.Rd | 22 - man/rsquared.lm.Rd | 22 - man/rsquared.lme.Rd | 22 - man/rsquared.merMod.Rd | 30 - man/rsquared.negbin.Rd | 22 - man/scaleGLM.Rd | 22 - man/scaleInt.Rd | 22 - man/shipley.Rd | 52 +- man/sortDag.Rd | 22 - man/specifyDir.Rd | 22 - man/stdCoefs.Rd | 38 +- man/stripTransformations.Rd | 22 - man/summary.psem.Rd | 234 ++++++------ man/testBasisSetElements.Rd | 22 - man/unstdCoefs.Rd | 34 - man/update.psem.Rd | 41 +- 94 files changed, 2632 insertions(+), 2481 deletions(-)
Title: A Toolkit for Recursive Partytioning
Description: A toolkit with infrastructure for representing, summarizing, and
visualizing tree-structured regression and classification models. This
unified infrastructure can be used for reading/coercing tree models from
different sources ('rpart', 'RWeka', 'PMML') yielding objects that share
functionality for print()/plot()/predict() methods. Furthermore, new and improved
reimplementations of conditional inference trees (ctree()) and model-based
recursive partitioning (mob()) from the 'party' package are provided based
on the new infrastructure. A description of this package was published
by Hothorn and Zeileis (2015) <https://jmlr.org/papers/v16/hothorn15a.html>.
Author: Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>),
Heidi Seibold [ctb] (<https://orcid.org/0000-0002-8960-9642>),
Achim Zeileis [aut] (<https://orcid.org/0000-0003-0918-3766>)
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between partykit versions 1.2-10 dated 2020-10-12 and 1.2-11 dated 2020-12-09
DESCRIPTION | 8 +- MD5 | 37 +++++++------ R/cforest.R | 67 ++++++++++++++++++++++--- R/ctree.R | 7 +- R/extree.R | 49 +++++++++++++++--- build/vignette.rds |binary inst/NEWS.Rd | 18 ++++++ inst/doc/constparty.pdf |binary inst/doc/ctree.pdf |binary inst/doc/mob.pdf |binary inst/doc/partykit.pdf |binary man/cforest.Rd | 19 +++++-- man/ctree_control.Rd | 4 + src/rfweights.c | 5 + tests/regtest-ctree.R | 10 +++ tests/regtest-ctree.Rout.save | 18 +++++- tests/regtest-glmtree.R | 2 tests/regtest-glmtree.Rout.save | 8 +- tests/regtest-honesty.R |only vignettes/ctree.Rout.save | 107 ++++++++++++++++++++++------------------ 20 files changed, 260 insertions(+), 99 deletions(-)
Title: Retrieving Publications from PubMed Database Based on User Query
Description: Connects to Pubmed <https://pubmed.ncbi.nlm.nih.gov/> to retrieve publications related to user-defined search query.
Author: Mohamed Soudy [aut, cre],
Ali Mostafa [aut]
Maintainer: Mohamed Soudy <MohmedSoudy2009@gmail.com>
Diff between ResearchAssociate versions 0.0.1 dated 2020-11-25 and 1.0.0 dated 2020-12-09
DESCRIPTION | 8 ++++---- MD5 | 12 +++++++++--- NAMESPACE | 12 +++++++++--- R/GetAbstracts.R |only R/PlotPublications.R |only man/Get.Abstracts.Rd |only man/Get.Publication.info.Rd | 4 ++-- man/Plot.TopJournals.Rd |only man/Plot.TopPapers.Rd |only man/Plot.papertype.Rd |only 10 files changed, 24 insertions(+), 12 deletions(-)
More information about ResearchAssociate at CRAN
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Title: Three-Way Correspondence Analysis Variants
Description: Provides four variants of three-way correspondence analysis (ca):
three-way symmetrical ca, three-way non-symmetrical ca, three-way ordered symmetrical ca
and three-way ordered non-symmetrical ca.
Author: Rosaria Lombardo, Eric J Beh and Michel van de Velden
Maintainer: Rosaria Lombardo <rosaria.lombardo@unicampania.it>
Diff between CA3variants versions 2.5 dated 2020-04-28 and 3.0 dated 2020-12-09
CA3variants-2.5/CA3variants/data/happy.rda |only CA3variants-2.5/CA3variants/data/olive.rda |only CA3variants-3.0/CA3variants/DESCRIPTION | 12 CA3variants-3.0/CA3variants/MD5 | 60 ++-- CA3variants-3.0/CA3variants/NAMESPACE | 9 CA3variants-3.0/CA3variants/R/CA3variants.R | 259 ++++++++++++++----- CA3variants-3.0/CA3variants/R/ca3basic.R | 29 +- CA3variants-3.0/CA3variants/R/ca3plot.R | 47 ++- CA3variants-3.0/CA3variants/R/chi3.R | 13 CA3variants-3.0/CA3variants/R/chi3ordered.R | 7 CA3variants-3.0/CA3variants/R/coord.R |only CA3variants-3.0/CA3variants/R/coordnsc3.R |only CA3variants-3.0/CA3variants/R/init3ordered.R | 37 +- CA3variants-3.0/CA3variants/R/init3ordered1.R | 12 CA3variants-3.0/CA3variants/R/init3ordered2.R | 13 CA3variants-3.0/CA3variants/R/nsca3basic.R | 42 +-- CA3variants-3.0/CA3variants/R/oca3basic.R | 4 CA3variants-3.0/CA3variants/R/onsca3basic.R | 2 CA3variants-3.0/CA3variants/R/plot.CA3variants.R | 251 +++++++++++------- CA3variants-3.0/CA3variants/R/print.CA3variants.R | 119 ++++++-- CA3variants-3.0/CA3variants/R/step.g3ordered.R | 2 CA3variants-3.0/CA3variants/R/tau3.R | 9 CA3variants-3.0/CA3variants/R/tau3ordered.R | 16 - CA3variants-3.0/CA3variants/R/tuckerORDERED.R | 15 - CA3variants-3.0/CA3variants/R/tunelocal.R | 77 +++-- CA3variants-3.0/CA3variants/data/happy.R |only CA3variants-3.0/CA3variants/data/museum.R |only CA3variants-3.0/CA3variants/data/olive.R |only CA3variants-3.0/CA3variants/man/CA3variants.Rd | 95 ++---- CA3variants-3.0/CA3variants/man/ca3plot.Rd | 30 -- CA3variants-3.0/CA3variants/man/coord.Rd |only CA3variants-3.0/CA3variants/man/coordnsc3.Rd |only CA3variants-3.0/CA3variants/man/museum.Rd |only CA3variants-3.0/CA3variants/man/plot.CA3variants.Rd | 67 ++-- CA3variants-3.0/CA3variants/man/print.CA3variants.Rd | 30 +- CA3variants-3.0/CA3variants/man/tunelocal.Rd | 33 +- 36 files changed, 802 insertions(+), 488 deletions(-)
Title: Simulate from ODE-Based Models
Description: Fast simulation from ordinary differential equation
(ODE) based models typically employed in quantitative pharmacology and
systems biology.
Author: Kyle T Baron [aut, cre] (<https://orcid.org/0000-0001-7252-5656>),
Bill Gillespie [ctb],
Charles Margossian [ctb],
Devin Pastoor [ctb],
Bill Denney [ctb] (<https://orcid.org/0000-0002-5759-428X>),
Dilawar Singh [ctb],
Felicien Le Louedec [ctb] (<https://orcid.org/0000-0003-3699-2729>),
Metrum Research Group [cph]
Maintainer: Kyle T Baron <kyleb@metrumrg.com>
Diff between mrgsolve versions 0.10.4 dated 2020-06-19 and 0.10.7 dated 2020-12-09
mrgsolve-0.10.4/mrgsolve/inst/script |only mrgsolve-0.10.7/mrgsolve/DESCRIPTION | 38 - mrgsolve-0.10.7/mrgsolve/MD5 | 80 +- mrgsolve-0.10.7/mrgsolve/NAMESPACE | 9 mrgsolve-0.10.7/mrgsolve/R/Aaaa.R | 27 mrgsolve-0.10.7/mrgsolve/R/annot.R | 8 mrgsolve-0.10.7/mrgsolve/R/class_matlist.R | 12 mrgsolve-0.10.7/mrgsolve/R/class_mrgmod.R | 11 mrgsolve-0.10.7/mrgsolve/R/funset.R | 8 mrgsolve-0.10.7/mrgsolve/R/model_include.R | 35 - mrgsolve-0.10.7/mrgsolve/R/mread.R | 81 ++ mrgsolve-0.10.7/mrgsolve/R/mrgindata.R | 49 + mrgsolve-0.10.7/mrgsolve/R/mrgsims.R | 2 mrgsolve-0.10.7/mrgsolve/R/mrgsolve.R | 448 +++++++-------- mrgsolve-0.10.7/mrgsolve/R/package.R | 12 mrgsolve-0.10.7/mrgsolve/R/relabel.R | 10 mrgsolve-0.10.7/mrgsolve/R/render.R | 2 mrgsolve-0.10.7/mrgsolve/R/utils.R | 19 mrgsolve-0.10.7/mrgsolve/inst/WORDLIST | 6 mrgsolve-0.10.7/mrgsolve/inst/base/mrgsolve-tad.h |only mrgsolve-0.10.7/mrgsolve/inst/include/dataobject.h | 16 mrgsolve-0.10.7/mrgsolve/inst/include/datarecord.h | 4 mrgsolve-0.10.7/mrgsolve/man/aboutsolver.Rd | 8 mrgsolve-0.10.7/mrgsolve/man/mread.Rd | 5 mrgsolve-0.10.7/mrgsolve/man/mrgsim.Rd | 150 ++--- mrgsolve-0.10.7/mrgsolve/man/mrgsim_variants.Rd | 46 - mrgsolve-0.10.7/mrgsolve/man/mrgsims_dplyr.Rd | 2 mrgsolve-0.10.7/mrgsolve/man/mrgsolve_package.Rd | 4 mrgsolve-0.10.7/mrgsolve/man/qsim.Rd | 43 - mrgsolve-0.10.7/mrgsolve/src/dataobject.cpp | 98 ++- mrgsolve-0.10.7/mrgsolve/src/datarecord.cpp | 9 mrgsolve-0.10.7/mrgsolve/src/devtran.cpp | 63 +- mrgsolve-0.10.7/mrgsolve/src/housemodel-mread-header.h | 2 mrgsolve-0.10.7/mrgsolve/src/mrgsolve_init.cpp | 7 mrgsolve-0.10.7/mrgsolve/tests/testthat/test-annot.R | 9 mrgsolve-0.10.7/mrgsolve/tests/testthat/test-carry_out.R | 2 mrgsolve-0.10.7/mrgsolve/tests/testthat/test-matlist.R | 6 mrgsolve-0.10.7/mrgsolve/tests/testthat/test-mread.R | 5 mrgsolve-0.10.7/mrgsolve/tests/testthat/test-mrgindata.R | 29 mrgsolve-0.10.7/mrgsolve/tests/testthat/test-mrgsims.R | 7 mrgsolve-0.10.7/mrgsolve/tests/testthat/test-ss.R | 12 mrgsolve-0.10.7/mrgsolve/tests/testthat/test-utils.R | 21 42 files changed, 830 insertions(+), 575 deletions(-)
Title: Interface to 'Interpretable AI' Modules
Description: An interface to the algorithms of 'Interpretable AI'
<https://www.interpretable.ai> from the R programming language.
'Interpretable AI' provides various modules, including 'Optimal Trees' for
classification, regression, prescription and survival analysis, 'Optimal
Imputation' for missing data imputation and outlier detection, and 'Optimal
Feature Selection' for exact sparse regression. The 'iai' package is an
open-source project. The 'Interpretable AI' software modules are proprietary
products, but free academic and evaluation licenses are available.
Author: Jack Dunn [aut, cre],
Ying Zhuo [aut],
Interpretable AI LLC [cph]
Maintainer: Jack Dunn <jack@interpretable.ai>
Diff between iai versions 1.3.0 dated 2020-08-05 and 1.4.0 dated 2020-12-09
DESCRIPTION | 8 MD5 | 249 +++++++++++++++------------- NAMESPACE | 20 ++ NEWS.md | 11 + R/heuristics.R |only R/iaibase.R | 177 +++++++++++++------ R/iaitrees.R | 248 ++++++++++++++++++++------- R/optimalfeatureselection.R | 24 +- R/optimaltrees.R | 18 +- R/optimpute.R | 18 +- R/rewardestimation.R | 151 ++++++++++++++++ R/utils.R | 2 inst/julia/convert.jl | 5 man/all_treatment_combinations.Rd |only man/apply.Rd | 2 man/apply_nodes.Rd | 2 man/as.mixeddata.Rd | 2 man/categorical_reward_estimator.Rd |only man/clone.Rd | 2 man/convert_treatments_to_numeric.Rd |only man/decision_path.Rd | 2 man/delete_rich_output_param.Rd | 2 man/equal_propensity_estimator.Rd |only man/fit.Rd | 2 man/fit_cv.Rd | 2 man/fit_predict.Rd | 29 +-- man/fit_transform.Rd | 6 man/fit_transform_cv.Rd | 2 man/get_best_params.Rd | 2 man/get_classification_label.Rd | 6 man/get_classification_proba.Rd | 6 man/get_depth.Rd | 2 man/get_grid_results.Rd | 2 man/get_learner.Rd | 2 man/get_lower_child.Rd | 2 man/get_num_fits.Rd |only man/get_num_nodes.Rd | 2 man/get_num_samples.Rd | 2 man/get_params.Rd | 2 man/get_parent.Rd | 2 man/get_policy_treatment_outcome.Rd |only man/get_policy_treatment_rank.Rd | 6 man/get_prediction_constant.Rd | 7 man/get_prediction_weights.Rd | 7 man/get_prescription_treatment_rank.Rd | 6 man/get_regression_constant.Rd | 2 man/get_regression_weights.Rd | 2 man/get_rich_output_params.Rd | 2 man/get_roc_curve_data.Rd |only man/get_split_categories.Rd | 2 man/get_split_feature.Rd | 2 man/get_split_threshold.Rd | 2 man/get_split_weights.Rd | 2 man/get_survival_curve.Rd | 6 man/get_survival_curve_data.Rd | 6 man/get_survival_expected_time.Rd |only man/get_survival_hazard.Rd |only man/get_upper_child.Rd | 2 man/glmnetcv_regressor.Rd |only man/grid_search.Rd | 2 man/imputation_learner.Rd | 2 man/impute.Rd | 2 man/impute_cv.Rd | 2 man/is_categoric_split.Rd | 2 man/is_hyperplane_split.Rd | 2 man/is_leaf.Rd | 2 man/is_mixed_ordinal_split.Rd | 2 man/is_mixed_parallel_split.Rd | 2 man/is_ordinal_split.Rd | 2 man/is_parallel_split.Rd | 2 man/mean_imputation_learner.Rd | 2 man/missing_goes_lower.Rd | 2 man/multi_questionnaire.Rd | 2 man/multi_questionnaire.default.Rd | 4 man/multi_questionnaire.grid_search.Rd | 2 man/multi_tree_plot.Rd | 2 man/multi_tree_plot.default.Rd | 4 man/multi_tree_plot.grid_search.Rd | 2 man/numeric_reward_estimator.Rd |only man/opt_knn_imputation_learner.Rd | 2 man/opt_svm_imputation_learner.Rd | 2 man/opt_tree_imputation_learner.Rd | 2 man/optimal_feature_selection_classifier.Rd | 2 man/optimal_feature_selection_regressor.Rd | 2 man/optimal_tree_classifier.Rd | 2 man/optimal_tree_policy_maximizer.Rd | 2 man/optimal_tree_policy_minimizer.Rd | 2 man/optimal_tree_prescription_maximizer.Rd | 2 man/optimal_tree_prescription_minimizer.Rd | 2 man/optimal_tree_regressor.Rd | 2 man/optimal_tree_survival_learner.Rd | 2 man/optimal_tree_survivor.Rd | 2 man/predict.Rd | 6 man/predict_expected_survival_time.Rd | 2 man/predict_hazard.Rd | 2 man/predict_outcomes.Rd | 4 man/predict_proba.Rd | 2 man/predict_treatment_outcome.Rd |only man/predict_treatment_rank.Rd |only man/print_path.Rd | 2 man/questionnaire.Rd | 4 man/rand_imputation_learner.Rd | 2 man/random_forest_classifier.Rd |only man/random_forest_regressor.Rd |only man/read_json.Rd | 2 man/reset_display_label.Rd | 2 man/reward_estimator.Rd | 11 - man/roc_curve.Rd | 2 man/roc_curve.default.Rd | 2 man/roc_curve.learner.Rd | 2 man/score.Rd | 2 man/set_display_label.Rd | 2 man/set_params.Rd | 2 man/set_rich_output_param.Rd | 2 man/set_threshold.Rd | 2 man/show_in_browser.Rd | 2 man/show_questionnaire.Rd | 2 man/single_knn_imputation_learner.Rd | 2 man/split_data.Rd | 2 man/transform.Rd | 2 man/tree_plot.Rd | 4 man/variable_importance.Rd | 2 man/write_booster.Rd |only man/write_dot.Rd | 2 man/write_html.Rd | 2 man/write_json.Rd | 2 man/write_pdf.Rd |only man/write_png.Rd | 2 man/write_questionnaire.Rd | 2 man/write_svg.Rd |only man/xgboost_classifier.Rd |only man/xgboost_regressor.Rd |only tests/testthat.R | 14 + tests/testthat/test_heuristics.R |only tests/testthat/test_iaibase.R | 39 ++++ tests/testthat/test_iaitrees.R | 148 +++++++++++++++- tests/testthat/test_rewardestimation.R |only 137 files changed, 991 insertions(+), 427 deletions(-)
Title: Reimplementations of Functions Introduced Since R-3.0.0
Description: Functions introduced or changed since R v3.0.0 are re-implemented in this
package. The backports are conditionally exported in order to let R resolve
the function name to either the implemented backport, or the respective base
version, if available. Package developers can make use of new functions or
arguments by selectively importing specific backports to
support older installations.
Author: Michel Lang [cre, aut] (<https://orcid.org/0000-0001-9754-0393>),
R Core Team [aut]
Maintainer: Michel Lang <michellang@gmail.com>
Diff between backports versions 1.2.0 dated 2020-11-02 and 1.2.1 dated 2020-12-09
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ R/get0.R | 9 ++++++++- 4 files changed, 18 insertions(+), 7 deletions(-)
Title: Response Surface Analysis
Description: Advanced response surface analysis. The main function RSA computes
and compares several nested polynomial regression models (full second- or
third-order polynomial, shifted and rotated squared difference model,
rising ridge surfaces, basic squared difference model, asymmetric or
level-dependent congruence effect models). The package provides plotting
functions for 3d wireframe surfaces, interactive 3d plots, and contour plots.
Calculates many surface parameters (a1 to a5, principal axes, stationary point,
eigenvalues) and provides standard, robust, or bootstrapped standard errors
and confidence intervals for them.
Author: Felix Schönbrodt [cre, aut],
Sarah Humberg [aut]
Maintainer: Felix Schönbrodt <felix@nicebread.de>
Diff between RSA versions 0.10.1 dated 2020-06-30 and 0.10.2 dated 2020-12-09
DESCRIPTION | 14 +- MD5 | 12 +- NAMESPACE | 2 R/demoRSA.R | 341 ++++++++++++++++++++++++++++------------------------------- R/demoSRR.R | 17 +- R/demoSRRR.R | 16 +- inst/News.Rd | 12 +- 7 files changed, 204 insertions(+), 210 deletions(-)
Title: Interface to 'fastai'
Description: The 'fastai' <https://docs.fast.ai/index.html> library
simplifies training fast and accurate neural networks
using modern best practices. It is based on research
in to deep learning best practices undertaken
at 'fast.ai', including 'out of the box' support
for vision, text, tabular, audio, time series, and
collaborative filtering models.
Author: Turgut Abdullayev [ctb, cre, cph, aut]
Maintainer: Turgut Abdullayev <turqut.a.314@gmail.com>
Diff between fastai versions 2.0.1 dated 2020-11-12 and 2.0.2 dated 2020-12-09
fastai-2.0.1/fastai/tests/testthat/test-tabular.R |only fastai-2.0.2/fastai/DESCRIPTION | 8 fastai-2.0.2/fastai/MD5 | 170 ++++++---- fastai-2.0.2/fastai/NAMESPACE | 37 ++ fastai-2.0.2/fastai/NEWS.md |only fastai-2.0.2/fastai/R/GAN.R | 8 fastai-2.0.2/fastai/R/blurr_hugging_face.R |only fastai-2.0.2/fastai/R/dataloader.R | 6 fastai-2.0.2/fastai/R/experimental.R | 9 fastai-2.0.2/fastai/R/generics_image.R |only fastai-2.0.2/fastai/R/import_modules.R | 11 fastai-2.0.2/fastai/R/install_fastai.R | 50 +- fastai-2.0.2/fastai/R/package.R | 2 fastai-2.0.2/fastai/R/predictions.R | 34 +- fastai-2.0.2/fastai/R/stats.R | 22 - fastai-2.0.2/fastai/R/tabular_model.R | 2 fastai-2.0.2/fastai/R/test.R | 26 - fastai-2.0.2/fastai/R/text_data.R | 47 +- fastai-2.0.2/fastai/R/vision_augment.R | 87 ++++- fastai-2.0.2/fastai/README.md | 29 + fastai-2.0.2/fastai/build/vignette.rds |binary fastai-2.0.2/fastai/inst/doc/Basic_Tabular.html | 102 ++---- fastai-2.0.2/fastai/inst/doc/audio.R | 17 - fastai-2.0.2/fastai/inst/doc/audio.Rmd | 17 - fastai-2.0.2/fastai/inst/doc/audio.html | 123 ++----- fastai-2.0.2/fastai/inst/doc/audio2tf.R | 18 - fastai-2.0.2/fastai/inst/doc/audio2tf.Rmd | 18 - fastai-2.0.2/fastai/inst/doc/audio2tf.html | 124 ++----- fastai-2.0.2/fastai/inst/doc/basic_img_class.R | 1 fastai-2.0.2/fastai/inst/doc/basic_img_class.Rmd | 45 -- fastai-2.0.2/fastai/inst/doc/basic_img_class.html | 146 ++------ fastai-2.0.2/fastai/inst/doc/callbacks.html | 102 ++---- fastai-2.0.2/fastai/inst/doc/catalyst.html | 102 ++---- fastai-2.0.2/fastai/inst/doc/custom_img.html | 102 ++---- fastai-2.0.2/fastai/inst/doc/data_aug.html | 102 ++---- fastai-2.0.2/fastai/inst/doc/gpt.html | 102 ++---- fastai-2.0.2/fastai/inst/doc/head_pose.html | 102 ++---- fastai-2.0.2/fastai/inst/doc/lightning.html | 102 ++---- fastai-2.0.2/fastai/inst/doc/low.html | 102 ++---- fastai-2.0.2/fastai/inst/doc/medical_dcm.R | 2 fastai-2.0.2/fastai/inst/doc/medical_dcm.Rmd | 2 fastai-2.0.2/fastai/inst/doc/medical_dcm.html | 104 ++---- fastai-2.0.2/fastai/inst/doc/migrating_ignite.html | 102 ++---- fastai-2.0.2/fastai/inst/doc/migrating_pytorch.html | 102 ++---- fastai-2.0.2/fastai/inst/doc/multilabel.R |only fastai-2.0.2/fastai/inst/doc/multilabel.Rmd |only fastai-2.0.2/fastai/inst/doc/multilabel.html |only fastai-2.0.2/fastai/inst/doc/obj_detect.html | 102 ++---- fastai-2.0.2/fastai/inst/doc/optimizer.html | 102 ++---- fastai-2.0.2/fastai/inst/doc/question_answering.R |only fastai-2.0.2/fastai/inst/doc/question_answering.Rmd |only fastai-2.0.2/fastai/inst/doc/question_answering.html |only fastai-2.0.2/fastai/inst/doc/super_res_gan.html | 102 ++---- fastai-2.0.2/fastai/inst/doc/textclassification.R |only fastai-2.0.2/fastai/inst/doc/textclassification.Rmd |only fastai-2.0.2/fastai/inst/doc/textclassification.html |only fastai-2.0.2/fastai/inst/doc/textsummarize.R |only fastai-2.0.2/fastai/inst/doc/textsummarize.Rmd |only fastai-2.0.2/fastai/inst/doc/textsummarize.html |only fastai-2.0.2/fastai/inst/doc/time_series.html | 102 ++---- fastai-2.0.2/fastai/man/AutoConfig.Rd |only fastai-2.0.2/fastai/man/ClassificationInterpretation_from_learner.Rd | 2 fastai-2.0.2/fastai/man/HF_ARCHITECTURES.Rd |only fastai-2.0.2/fastai/man/HF_BaseInput.Rd |only fastai-2.0.2/fastai/man/HF_BaseModelCallback.Rd |only fastai-2.0.2/fastai/man/HF_BaseModelWrapper.Rd |only fastai-2.0.2/fastai/man/HF_BeforeBatchTransform.Rd |only fastai-2.0.2/fastai/man/HF_CausalLMBeforeBatchTransform.Rd |only fastai-2.0.2/fastai/man/HF_QABatchTransform.Rd |only fastai-2.0.2/fastai/man/HF_QABeforeBatchTransform.Rd |only fastai-2.0.2/fastai/man/HF_QstAndAnsModelCallback.Rd |only fastai-2.0.2/fastai/man/HF_QuestionAnswerInput.Rd |only fastai-2.0.2/fastai/man/HF_SummarizationBeforeBatchTransform.Rd |only fastai-2.0.2/fastai/man/HF_SummarizationInput.Rd |only fastai-2.0.2/fastai/man/HF_SummarizationModelCallback.Rd |only fastai-2.0.2/fastai/man/HF_TASKS_ALL.Rd |only fastai-2.0.2/fastai/man/HF_TASKS_AUTO.Rd |only fastai-2.0.2/fastai/man/HF_Text2TextAfterBatchTransform.Rd |only fastai-2.0.2/fastai/man/HF_Text2TextBlock.Rd |only fastai-2.0.2/fastai/man/HF_TextBlock.Rd |only fastai-2.0.2/fastai/man/HF_TokenCategorize.Rd |only fastai-2.0.2/fastai/man/HF_TokenCategoryBlock.Rd |only fastai-2.0.2/fastai/man/HF_TokenClassBeforeBatchTransform.Rd |only fastai-2.0.2/fastai/man/HF_TokenClassInput.Rd |only fastai-2.0.2/fastai/man/HF_TokenTensorCategory.Rd |only fastai-2.0.2/fastai/man/HF_load_dataset.Rd |only fastai-2.0.2/fastai/man/MultiTargetLoss.Rd |only fastai-2.0.2/fastai/man/Zoom_.Rd |only fastai-2.0.2/fastai/man/as_array.Rd |only fastai-2.0.2/fastai/man/blurr.Rd | 8 fastai-2.0.2/fastai/man/calculate_rouge.Rd |only fastai-2.0.2/fastai/man/get_hf_objects.Rd |only fastai-2.0.2/fastai/man/helper.Rd |only fastai-2.0.2/fastai/man/hf_splitter.Rd |only fastai-2.0.2/fastai/man/install_fastai.Rd | 5 fastai-2.0.2/fastai/man/one_batch.Rd | 4 fastai-2.0.2/fastai/man/pre_process_squad.Rd |only fastai-2.0.2/fastai/man/py_apply.Rd |only fastai-2.0.2/fastai/man/show_image.Rd | 2 fastai-2.0.2/fastai/man/show_results.Rd | 2 fastai-2.0.2/fastai/man/subplots.Rd | 4 fastai-2.0.2/fastai/man/summarization_splitter.Rd |only fastai-2.0.2/fastai/man/tabular_config.Rd | 2 fastai-2.0.2/fastai/man/tensor_eq_img.Rd |only fastai-2.0.2/fastai/man/transformers.Rd |only fastai-2.0.2/fastai/tests/testthat.R | 4 fastai-2.0.2/fastai/tests/testthat/test-collab.R |only fastai-2.0.2/fastai/vignettes/audio.Rmd | 17 - fastai-2.0.2/fastai/vignettes/audio2tf.Rmd | 18 - fastai-2.0.2/fastai/vignettes/basic_img_class.Rmd | 45 -- fastai-2.0.2/fastai/vignettes/medical_dcm.Rmd | 2 fastai-2.0.2/fastai/vignettes/multilabel.Rmd |only fastai-2.0.2/fastai/vignettes/question_answering.Rmd |only fastai-2.0.2/fastai/vignettes/textclassification.Rmd |only fastai-2.0.2/fastai/vignettes/textsummarize.Rmd |only 115 files changed, 1222 insertions(+), 1588 deletions(-)
Title: Implementation of the 3D Alpha-Shape for the Reconstruction of
3D Sets from a Point Cloud
Description: Implementation in R of the alpha-shape of a finite set of points in the three-dimensional space. The alpha-shape generalizes the convex hull and allows to recover the shape of non-convex and even non-connected sets in 3D, given a random sample of points taken into it. Besides the computation of the alpha-shape, this package provides users with functions to compute the volume of the alpha-shape, identify the connected components and facilitate the three-dimensional graphical visualization of the estimated set.
Author: Thomas Lafarge, Beatriz Pateiro-Lopez
Maintainer: Beatriz Pateiro-Lopez <beatriz.pateiro@usc.es>
Diff between alphashape3d versions 1.3 dated 2017-12-21 and 1.3.1 dated 2020-12-09
alphashape3d-1.3.1/alphashape3d/DESCRIPTION | 10 ++++------ alphashape3d-1.3.1/alphashape3d/MD5 | 6 ++---- alphashape3d-1.3.1/alphashape3d/src/alphashape3d.c | 1 + alphashape3d-1.3/alphashape3d/R/alphashape3d-package.R |only alphashape3d-1.3/alphashape3d/man/alphashape3d-package.Rd |only 5 files changed, 7 insertions(+), 10 deletions(-)
Title: Comparison of Phylogenetic Trees Using Quartet and Split
Measures
Description: Calculates the number of four-taxon subtrees consistent with a pair
of cladograms, calculating the symmetric quartet distance of Bandelt & Dress (1986),
Reconstructing the shape of a tree from observed dissimilarity data,
Advances in Applied Mathematics, 7, 309-343 <doi:10.1016/0196-8858(86)90038-2>,
and using the tqDist algorithm of Sand et al. (2014), tqDist: a library for
computing the quartet and triplet distances between binary or general trees,
Bioinformatics, 30, 2079–2080 <doi:10.1093/bioinformatics/btu157>
for pairs of binary trees.
Author: Martin R. Smith [aut, cre, cph]
(<https://orcid.org/0000-0001-5660-1727>),
Andreas Sand [ant],
Gerth Stølting Brodal [ant],
Rolf Fagerberg [ant],
Thomas Mailund [ant],
Christian N. S. Pedersen [ant],
Jens Johansen [ant],
Morten K. Holt [ant]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between Quartet versions 1.2.0 dated 2020-10-21 and 1.2.2 dated 2020-12-09
DESCRIPTION | 8 - MD5 | 24 ++-- NEWS.md | 4 R/Quartet-package.R | 2 R/zzz.R | 2 README.md | 4 build/partial.rdb |binary build/vignette.rds |binary inst/doc/Quartet-Distance.pdf |binary inst/doc/Using-Quartet.pdf |binary man/Quartet-package.Rd | 190 ++++++++++++++++----------------- tests/testthat/test-QuartetDistance.R | 10 - tests/testthat/test-VisualizeQuartet.R | 7 - 13 files changed, 128 insertions(+), 123 deletions(-)
Title: Creates and Plots P-Value Functions, S-Value Functions,
Confidence Distributions and Confidence Densities
Description: Contains functions to compute and plot confidence distributions, confidence densities, p-value functions and s-value (surprisal) functions for several commonly used estimates. Instead of just calculating one p-value and one confidence interval, p-value functions display p-values and confidence intervals for many levels thereby allowing to gauge the compatibility of several parameter values with the data. These methods are discussed by Infanger D, Schmidt-Trucksäss A. (2019) <doi:10.1002/sim.8293>; Poole C. (1987) <doi:10.2105/AJPH.77.2.195>; Schweder T, Hjort NL. (2002) <doi:10.1111/1467-9469.00285>; Bender R, Berg G, Zeeb H. (2005) <doi:10.1002/bimj.200410104> ; Singh K, Xie M, Strawderman WE. (2007) <doi:10.1214/074921707000000102>; Rothman KJ, Greenland S, Lash TL. (2008, ISBN:9781451190052); Amrhein V, Trafimow D, Greenland S. (2019) <doi:10.1080/00031305.2018.1543137>; Greenland S. (2019) <doi:10.1080/00031305.2018.1529625> and Rafi Z, Greenland S. (2020) <doi:10.1186/s12874-020-01105-9>.
Author: Denis Infanger [aut, cre] (<https://orcid.org/0000-0001-9028-7110>)
Maintainer: Denis Infanger <denis.infanger@unibas.ch>
Diff between pvaluefunctions versions 1.6.0 dated 2020-06-24 and 1.6.1 dated 2020-12-09
DESCRIPTION | 10 +-- MD5 | 25 ++++---- NEWS.md | 6 ++ R/confidence_distributions.R | 8 +- README.md | 49 ++++++++-------- build/vignette.rds |binary inst/doc/pvaluefun.R | 30 +++++----- inst/doc/pvaluefun.Rmd | 30 +++++----- inst/doc/pvaluefun.html | 105 ++++++++++++++++++++++++++---------- man/figures/README-benderfig1-1.png |binary man/figures/README-ttest_pval-1.png |binary man/figures/README-ttest_sval-1.png |binary vignettes/pvaluefun.Rmd | 30 +++++----- vignettes/pvaluefun.md |only 14 files changed, 176 insertions(+), 117 deletions(-)
More information about pvaluefunctions at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-12-09 2.6.0
2020-11-12 2.5.0
2020-02-08 2.4.0
2019-12-11 2.3.0
Title: Create Ternary Plots
Description: Plots ternary diagrams (simplex plots / Gibbs triangles) using the
standard graphics functions.
An alternative to 'ggtern', which uses the 'ggplot2' family of plotting
functions.
Includes a 'Shiny' user interface for point-and-click plotting.
Author: Martin R. Smith [aut, cre, cph]
(<https://orcid.org/0000-0001-5660-1727>),
Lilian Sanselme [ctb]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between Ternary versions 1.2.0 dated 2020-10-16 and 1.2.1 dated 2020-12-09
Ternary-1.2.0/Ternary/tests/testthat/Rplots.pdf |only Ternary-1.2.1/Ternary/DESCRIPTION | 11 Ternary-1.2.1/Ternary/MD5 | 61 Ternary-1.2.1/Ternary/NEWS.md | 5 Ternary-1.2.1/Ternary/R/Contours.R | 9 Ternary-1.2.1/Ternary/R/Coordinates.R | 2 Ternary-1.2.1/Ternary/R/TernaryPlot.R | 9 Ternary-1.2.1/Ternary/README.md | 1 Ternary-1.2.1/Ternary/build/partial.rdb |binary Ternary-1.2.1/Ternary/build/vignette.rds |binary Ternary-1.2.1/Ternary/inst/TernaryApp/app.R | 18 Ternary-1.2.1/Ternary/inst/doc/Ternary.html | 71 Ternary-1.2.1/Ternary/man/AddToTernary.Rd | 166 - Ternary-1.2.1/Ternary/man/ColourTernary.Rd | 162 - Ternary-1.2.1/Ternary/man/CoordinatesToXY.Rd | 52 Ternary-1.2.1/Ternary/man/OutsidePlot.Rd | 92 Ternary-1.2.1/Ternary/man/ReflectedEquivalents.Rd | 98 Ternary-1.2.1/Ternary/man/TernaryApp.Rd | 148 - Ternary-1.2.1/Ternary/man/TernaryContour.Rd | 104 Ternary-1.2.1/Ternary/man/TernaryCoords.Rd | 126 Ternary-1.2.1/Ternary/man/TernaryDensityContour.Rd | 186 - Ternary-1.2.1/Ternary/man/TernaryPlot.Rd | 9 Ternary-1.2.1/Ternary/man/TernaryPointValues.Rd | 168 - Ternary-1.2.1/Ternary/man/TernaryTiles.Rd | 122 Ternary-1.2.1/Ternary/man/TernaryXRange.Rd | 80 Ternary-1.2.1/Ternary/man/TriangleCentres.Rd | 90 Ternary-1.2.1/Ternary/man/XYToTernary.Rd | 72 Ternary-1.2.1/Ternary/tests/figs/contour-plotting/rgbcolours.svg | 1274 +++++----- Ternary-1.2.1/Ternary/tests/testthat.R | 1 Ternary-1.2.1/Ternary/tests/testthat/test-Contours.R | 23 Ternary-1.2.1/Ternary/tests/testthat/test-axis.rotate.R | 6 Ternary-1.2.1/Ternary/tests/testthat/test-ternary.R | 39 32 files changed, 1630 insertions(+), 1575 deletions(-)
Title: Positron Emission Tomography Time-Activity Curve Analysis
Description: To facilitate the analysis of positron emission tomography (PET)
time activity curve (TAC) data, and to encourage open science and
replicability, this package supports data loading and analysis of multiple
TAC file formats. Functions are available to analyze loaded TAC data for
individual participants or in batches. Major functionality includes weighted
TAC merging by region of interest (ROI), calculating models including
standardized uptake value ratio (SUVR) and distribution volume ratio (DVR,
Logan et al. 1996 <doi:10.1097/00004647-199609000-00008>), basic plotting
functions and calculation of cut-off values (Aizenstein et al. 2008
<doi:10.1001/archneur.65.11.1509>). Please see the walkthrough vignette for
a detailed overview of 'tacmagic' functions.
Author: Eric Brown [aut, cre] (<https://orcid.org/0000-0002-1575-2606>),
Ariel Graff-Guerrero [dgs],
Jon Clayden [rev] (<https://orcid.org/0000-0002-6608-0619>, Jon Clayden
reviewed the package for ropensci, see
<https://github.com/ropensci/software-review/issues/280>),
Brandon Hurr [rev] (<https://orcid.org/0000-0003-2576-4544>, Brandon
Hurr reviewed the package for ropensci, see
<https://github.com/ropensci/software-review/issues/280>)
Maintainer: Eric Brown <eb@ericebrown.com>
Diff between tacmagic versions 0.3.0 dated 2019-06-07 and 0.3.1 dated 2020-12-09
DESCRIPTION | 8 +-- MD5 | 69 +++++++++++++++--------------- NAMESPACE | 1 NEWS.md | 6 ++ R/ROI_definitions.R | 101 ++++++++++++++++++++++++++++++++++++++++++++ inst/doc/walkthrough.R | 44 +++++++++---------- inst/doc/walkthrough.html | 43 +++++++++--------- man/DVR_all_ref_Logan.Rd | 17 +++++-- man/DVR_ref_Logan.Rd | 17 +++++-- man/as.tac.Rd | 6 +- man/batch_load.Rd | 25 +++++++--- man/batch_tm.Rd | 5 +- man/batch_voistat.Rd | 14 ++++-- man/cutoff_aiz.Rd | 3 - man/dvr.Rd | 18 ++++++- man/fake_DVR.Rd | 4 + man/load_tac.Rd | 15 ++++-- man/load_voistat.Rd | 6 +- man/load_vol.Rd | 6 +- man/plot.ref_Logan.Rd | 6 +- man/plot.tac.Rd | 18 ++++++- man/pos_anyroi.Rd | 3 - man/roi_AAL_full.Rd |only man/roi_ham_full.Rd | 6 +- man/roi_ham_pib.Rd | 6 +- man/roi_ham_stand.Rd | 6 +- man/save_tac.Rd | 6 +- man/split_pvc.Rd | 6 +- man/suv.Rd | 6 +- man/suvr.Rd | 3 - man/suvr_auc.Rd | 3 - man/tac_roi.Rd | 6 +- man/tac_suv.Rd | 3 - man/tacmagic.Rd | 1 tests/testthat/test_logan.R | 7 ++- tests/testthat/test_plot.R | 11 +++- 36 files changed, 356 insertions(+), 149 deletions(-)
Title: Forecasting Using State Space Models
Description: Functions implementing Single Source of Error state space models for purposes of time series analysis and forecasting.
The package includes Exponential Smoothing (Hyndman et al., 2008, <doi: 10.1007/978-3-540-71918-2>),
SARIMA (Svetunkov & Boylan, 2019 <doi: 10.1080/00207543.2019.1600764>),
Complex Exponential Smoothing (Svetunkov & Kourentzes, 2018, <doi: 10.13140/RG.2.2.24986.29123>),
Simple Moving Average (Svetunkov & Petropoulos, 2018 <doi: 10.1080/00207543.2017.1380326>),
Vector Exponential Smoothing (de Silva et al., 2010, <doi: 10.1177/1471082X0901000401>) in state space forms,
several simulation functions and intermittent demand state space models. It also allows dealing with
intermittent demand based on the iETS framework (Svetunkov & Boylan, 2017, <doi: 10.13140/RG.2.2.35897.06242>).
Author: Ivan Svetunkov [aut, cre] (Lecturer at Centre for Marketing Analytics
and Forecasting, Lancaster University, UK)
Maintainer: Ivan Svetunkov <ivan@svetunkov.ru>
Diff between smooth versions 2.6.0 dated 2020-06-17 and 3.0.0 dated 2020-12-09
smooth-2.6.0/smooth/man/iss.Rd |only smooth-3.0.0/smooth/DESCRIPTION | 19 - smooth-3.0.0/smooth/MD5 | 188 ++++++------ smooth-3.0.0/smooth/NAMESPACE | 89 +++++ smooth-3.0.0/smooth/NEWS | 52 +++ smooth-3.0.0/smooth/R/RcppExports.R | 32 +- smooth-3.0.0/smooth/R/adam.R |only smooth-3.0.0/smooth/R/adamGeneral.R |only smooth-3.0.0/smooth/R/autoadam.R |only smooth-3.0.0/smooth/R/autoces.R | 28 - smooth-3.0.0/smooth/R/autogum.R | 40 +- smooth-3.0.0/smooth/R/automsarima.R | 54 +-- smooth-3.0.0/smooth/R/autossarima.R | 54 +-- smooth-3.0.0/smooth/R/ces.R | 51 +-- smooth-3.0.0/smooth/R/cma.R | 5 smooth-3.0.0/smooth/R/depricator.R | 33 -- smooth-3.0.0/smooth/R/es.R | 158 +++------- smooth-3.0.0/smooth/R/gnorm.R |only smooth-3.0.0/smooth/R/gum.R | 43 +- smooth-3.0.0/smooth/R/isFunctions.R | 39 ++ smooth-3.0.0/smooth/R/iss.R | 340 ---------------------- smooth-3.0.0/smooth/R/methods.R | 238 ++++++--------- smooth-3.0.0/smooth/R/msarima.R | 36 -- smooth-3.0.0/smooth/R/msdecompose.R | 15 smooth-3.0.0/smooth/R/oes.R | 30 + smooth-3.0.0/smooth/R/oesg.R | 6 smooth-3.0.0/smooth/R/simes.R | 11 smooth-3.0.0/smooth/R/sma.R | 4 smooth-3.0.0/smooth/R/smooth-package.R | 3 smooth-3.0.0/smooth/R/smoothCombine.R | 53 +-- smooth-3.0.0/smooth/R/sowhat.R | 4 smooth-3.0.0/smooth/R/ssarima.R | 32 -- smooth-3.0.0/smooth/R/ssfunctions.R | 126 +------- smooth-3.0.0/smooth/R/variance-covariance.R | 45 ++ smooth-3.0.0/smooth/R/ves.R | 37 +- smooth-3.0.0/smooth/R/viss.R | 11 smooth-3.0.0/smooth/R/zzz.R | 20 + smooth-3.0.0/smooth/README.md | 68 ++-- smooth-3.0.0/smooth/build/partial.rdb |binary smooth-3.0.0/smooth/build/vignette.rds |binary smooth-3.0.0/smooth/inst/doc/adam.R |only smooth-3.0.0/smooth/inst/doc/adam.Rmd |only smooth-3.0.0/smooth/inst/doc/adam.html |only smooth-3.0.0/smooth/inst/doc/ces.R | 3 smooth-3.0.0/smooth/inst/doc/ces.Rmd | 5 smooth-3.0.0/smooth/inst/doc/ces.html | 114 ++++--- smooth-3.0.0/smooth/inst/doc/es.R | 3 smooth-3.0.0/smooth/inst/doc/es.Rmd | 5 smooth-3.0.0/smooth/inst/doc/es.html | 317 +++++++++++--------- smooth-3.0.0/smooth/inst/doc/gum.html | 78 ++++- smooth-3.0.0/smooth/inst/doc/oes.R | 12 smooth-3.0.0/smooth/inst/doc/oes.Rmd | 20 - smooth-3.0.0/smooth/inst/doc/oes.html | 299 +++++++++++-------- smooth-3.0.0/smooth/inst/doc/simulate.html | 278 ++++++++++------- smooth-3.0.0/smooth/inst/doc/sma.html | 66 +++- smooth-3.0.0/smooth/inst/doc/smooth.Rmd | 3 smooth-3.0.0/smooth/inst/doc/smooth.html | 53 +++ smooth-3.0.0/smooth/inst/doc/ssarima.R | 4 smooth-3.0.0/smooth/inst/doc/ssarima.Rmd | 6 smooth-3.0.0/smooth/inst/doc/ssarima.html | 124 +++++--- smooth-3.0.0/smooth/inst/doc/ves.html | 86 ++++- smooth-3.0.0/smooth/man/adam.Rd |only smooth-3.0.0/smooth/man/auto.ces.Rd | 37 -- smooth-3.0.0/smooth/man/auto.gum.Rd | 38 -- smooth-3.0.0/smooth/man/auto.msarima.Rd | 37 -- smooth-3.0.0/smooth/man/auto.ssarima.Rd | 37 -- smooth-3.0.0/smooth/man/ces.Rd | 59 --- smooth-3.0.0/smooth/man/cma.Rd | 2 smooth-3.0.0/smooth/man/es.Rd | 68 ---- smooth-3.0.0/smooth/man/forecast.smooth.Rd | 26 + smooth-3.0.0/smooth/man/gum.Rd | 51 --- smooth-3.0.0/smooth/man/isFunctions.Rd | 26 + smooth-3.0.0/smooth/man/msarima.Rd | 48 --- smooth-3.0.0/smooth/man/oes.Rd | 4 smooth-3.0.0/smooth/man/plot.smooth.Rd | 9 smooth-3.0.0/smooth/man/refit.Rd |only smooth-3.0.0/smooth/man/rmultistep.Rd |only smooth-3.0.0/smooth/man/sim.ves.Rd | 2 smooth-3.0.0/smooth/man/smooth.Rd | 3 smooth-3.0.0/smooth/man/smoothCombine.Rd | 41 -- smooth-3.0.0/smooth/man/sowhat.Rd | 4 smooth-3.0.0/smooth/man/ssarima.Rd | 48 --- smooth-3.0.0/smooth/man/ves.Rd | 2 smooth-3.0.0/smooth/src/RcppExports.cpp | 177 ++++++++++- smooth-3.0.0/smooth/src/adamGeneral.cpp |only smooth-3.0.0/smooth/src/adamGeneral.h |only smooth-3.0.0/smooth/src/adamRefitter.cpp |only smooth-3.0.0/smooth/src/adamSimulator.cpp |only smooth-3.0.0/smooth/src/matrixPowerWrap.cpp |only smooth-3.0.0/smooth/src/ssGeneral.cpp | 171 ----------- smooth-3.0.0/smooth/src/ssGeneral.h | 29 + smooth-3.0.0/smooth/src/ssSimulator.cpp | 9 smooth-3.0.0/smooth/tests/testthat/test_adam.R |only smooth-3.0.0/smooth/tests/testthat/test_ces.R | 9 smooth-3.0.0/smooth/tests/testthat/test_es.R | 27 - smooth-3.0.0/smooth/tests/testthat/test_ges.R | 9 smooth-3.0.0/smooth/tests/testthat/test_ssarima.R | 9 smooth-3.0.0/smooth/vignettes/adam.Rmd |only smooth-3.0.0/smooth/vignettes/ces.Rmd | 5 smooth-3.0.0/smooth/vignettes/es.Rmd | 5 smooth-3.0.0/smooth/vignettes/library.bib | 7 smooth-3.0.0/smooth/vignettes/oes.Rmd | 20 - smooth-3.0.0/smooth/vignettes/smooth.Rmd | 3 smooth-3.0.0/smooth/vignettes/ssarima.Rmd | 6 104 files changed, 2079 insertions(+), 2389 deletions(-)
Title: Shape Constrained Additive Models
Description: Routines for generalized additive modelling under shape
constraints on the component functions of the linear predictor
(Pya and Wood, 2015) <doi:10.1007/s11222-013-9448-7>.
Models can contain multiple shape constrained (univariate
and/or bivariate) and unconstrained terms. The routines of gam()
in package 'mgcv' are used for setting up the model matrix,
printing and plotting the results. Penalized likelihood
maximization based on Newton-Raphson method is used to fit a
model with multiple smoothing parameter selection by GCV or
UBRE/AIC.
Author: Natalya Pya <nat.pya@gmail.com>
Maintainer: Natalya Pya <nat.pya@gmail.com>
Diff between scam versions 1.2-8 dated 2020-10-23 and 1.2-9 dated 2020-12-09
ChangeLog | 10 + DESCRIPTION | 8 - MD5 | 20 +- NAMESPACE | 8 + R/plot.r | 124 ++++++++++------ R/predict.scam.R | 99 ++++++------- R/scam.r | 6 R/uni.smooth.const-with-po.r | 233 +++++++++++++++++++++++++++++-- build/partial.rdb |binary man/Predict.matrix.mpi.smooth.Rd | 4 man/smooth.construct.mifo.smooth.spec.Rd |only man/smooth.construct.miso.smooth.spec.Rd |only 12 files changed, 392 insertions(+), 120 deletions(-)
Title: Perceptual Analysis, Visualization and Organization of Spectral
Colour Data
Description: A cohesive framework for parsing, analyzing and
organizing colour from spectral data.
Author: Thomas White [aut, cre] (<https://orcid.org/0000-0002-3976-1734>),
Rafael Maia [aut] (<https://orcid.org/0000-0002-7563-9795>),
Hugo Gruson [aut] (<https://orcid.org/0000-0002-4094-1476>),
John Endler [aut],
Chad Eliason [aut],
Pierre-Paul Bitton [aut] (<https://orcid.org/0000-0001-5984-2331>)
Maintainer: Thomas White <thomas.white026@gmail.com>
Diff between pavo versions 2.5.0 dated 2020-11-12 and 2.6.0 dated 2020-12-09
DESCRIPTION | 14 +- MD5 | 92 ++++++++--------- NEWS.md | 13 ++ R/adjacent.R | 4 R/bootcoldist.R | 4 R/classify.R | 4 R/coldist.R | 2 R/internal.R | 26 ++-- R/overlap3d.R | 9 + R/plot.colspace.R | 3 R/procimg.R | 2 R/tcsplot.R | 7 - R/tcsvol.R | 8 + R/vol.R | 11 ++ R/voloverlap.R | 3 build/partial.rdb |binary inst/doc/pavo-1-overview.Rmd | 1 inst/doc/pavo-1-overview.html | 6 - inst/doc/pavo-2-importing_processing.Rmd | 1 inst/doc/pavo-2-importing_processing.html | 10 - inst/doc/pavo-3-analysing.Rmd | 1 inst/doc/pavo-3-analysing.html | 149 ++++++++++++---------------- inst/doc/pavo-4-spectraldesc.Rmd | 1 inst/doc/pavo-4-spectraldesc.html | 42 ++++---- inst/doc/pavo-5-alphashapes.R | 22 ++-- inst/doc/pavo-5-alphashapes.Rmd | 26 +++- inst/doc/pavo-5-alphashapes.html | 157 ++++++++++++++---------------- man/adjacent.Rd | 2 man/bootcoldist.Rd | 2 man/classify.Rd | 2 man/coldist.Rd | 2 man/plot.colspace.Rd | 3 man/procimg.Rd | 2 man/tcsplot.Rd | 8 - man/vol.Rd | 3 man/voloverlap.Rd | 3 tests/testthat/test-S3colspace.R | 2 tests/testthat/test-coldist.R | 9 - tests/testthat/test-hashes.R | 7 - tests/testthat/test-images.R | 46 ++++---- tests/testthat/test-voloverlap.R | 46 +++++--- vignettes/main.bib | 6 - vignettes/pavo-1-overview.Rmd | 1 vignettes/pavo-2-importing_processing.Rmd | 1 vignettes/pavo-3-analysing.Rmd | 1 vignettes/pavo-4-spectraldesc.Rmd | 1 vignettes/pavo-5-alphashapes.Rmd | 26 +++- 47 files changed, 434 insertions(+), 357 deletions(-)
Title: Stubbing and Setting Expectations on 'HTTP' Requests
Description: Stubbing and setting expectations on 'HTTP' requests.
Includes tools for stubbing 'HTTP' requests, including expected
request conditions and response conditions. Match on
'HTTP' method, query parameters, request body, headers and
more. Can be used for unit tests or outside of a testing
context.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
Aaron Wolen [ctb] (<https://orcid.org/0000-0003-2542-2202>),
rOpenSci [fnd] (https://ropensci.org)
Maintainer: Scott Chamberlain <myrmecocystus+r@gmail.com>
Diff between webmockr versions 0.7.0 dated 2020-09-30 and 0.7.4 dated 2020-12-09
DESCRIPTION | 6 +- MD5 | 23 ++++---- NEWS.md | 12 ++++ R/RequestSignature.R | 38 +++++-------- R/StubbedRequest.R | 7 +- R/adapter-crul.R | 4 - R/adapter-httr.R | 18 +++++- R/wi_th.R | 5 + README.md | 91 ++++++++++++++++++++------------- man/RequestSignature.Rd | 4 + man/wi_th.Rd | 5 + tests/testthat/test-RequestSignature.R | 7 ++ tests/testthat/test-auth_handling.R |only 13 files changed, 136 insertions(+), 84 deletions(-)
Title: Create, Modify and Analyse Phylogenetic Trees
Description: Efficient implementations of functions for the creation,
modification and analysis of phylogenetic trees.
Applications include:
generation of trees with specified shapes;
analysis of tree shape;
rooting of trees and extraction of subtrees;
calculation and depiction of node support;
calculation of ancestor-descendant relationships;
import and export of trees from Newick, Nexus (Maddison et al. 1997)
<doi:10.1093/sysbio/46.4.590>,
and TNT <http://www.lillo.org.ar/phylogeny/tnt/> formats;
and analysis of splits and cladistic information.
Author: Martin R. Smith [aut, cre, cph]
(<https://orcid.org/0000-0001-5660-1727>),
Emmanuel Paradis [cph] (<https://orcid.org/0000-0003-3092-2199>)
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between TreeTools versions 1.4.0 dated 2020-10-19 and 1.4.1 dated 2020-12-09
DESCRIPTION | 6 MD5 | 24 +- NEWS.md | 5 R/parse_files.R | 14 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/filesystem-navigation.html | 243 +++++--------------------- inst/doc/load-data.html | 325 ++++++++++-------------------------- inst/doc/load-trees.html | 245 +++++---------------------- inst/include/TreeTools/types.h | 1 src/minimum_spanning_tree.cpp | 38 +--- tests/testthat/test-Support.R | 1 tests/testthat/test-mst.R | 6 13 files changed, 248 insertions(+), 660 deletions(-)
Title: Risk Regression Models and Prediction Scores for Survival
Analysis with Competing Risks
Description: Implementation of the following methods for event history analysis.
Risk regression models for survival endpoints also in the presence of competing
risks are fitted using binomial regression based on a time sequence of binary
event status variables. A formula interface for the Fine-Gray regression model
and an interface for the combination of cause-specific Cox regression models.
A toolbox for assessing and comparing performance of risk predictions (risk
markers and risk prediction models). Prediction performance is measured by the
Brier score and the area under the ROC curve for binary possibly time-dependent
outcome. Inverse probability of censoring weighting and pseudo values are used
to deal with right censored data. Lists of risk markers and lists of risk models
are assessed simultaneously. Cross-validation repeatedly splits the data, trains
the risk prediction models on one part of each split and then summarizes and
compares the performance across splits.
Author: Thomas Alexander Gerds [aut, cre],
Paul Blanche [ctb],
Rikke Mortensen [ctb],
Marvin Wright [ctb],
Nikolaj Tollenaar [ctb],
John Muschelli [ctb],
Ulla Brasch Mogensen [ctb],
Brice Ozenne [aut] (<https://orcid.org/0000-0001-9694-2956>)
Maintainer: Thomas Alexander Gerds <tag@biostat.ku.dk>
Diff between riskRegression versions 2020.02.05 dated 2020-02-08 and 2020.12.08 dated 2020-12-09
riskRegression-2020.02.05/riskRegression/R/confBandCox.R |only riskRegression-2020.02.05/riskRegression/man/confBandCox.Rd |only riskRegression-2020.02.05/riskRegression/man/transformP.Rd |only riskRegression-2020.02.05/riskRegression/src/calcSeHazardCif.cpp |only riskRegression-2020.02.05/riskRegression/src/iid.cpp |only riskRegression-2020.02.05/riskRegression/tests/testScore.org |only riskRegression-2020.02.05/riskRegression/vignettes/auto |only riskRegression-2020.02.05/riskRegression/vignettes/k-fold-CV.fdb_latexmk |only riskRegression-2020.02.05/riskRegression/vignettes/k-fold-CV.synctex.gz |only riskRegression-2020.12.08/riskRegression/DESCRIPTION | 31 riskRegression-2020.12.08/riskRegression/MD5 | 230 +- riskRegression-2020.12.08/riskRegression/NAMESPACE | 15 riskRegression-2020.12.08/riskRegression/NEWS | 11 riskRegression-2020.12.08/riskRegression/R/0onload.R | 8 riskRegression-2020.12.08/riskRegression/R/CSC.R | 60 riskRegression-2020.12.08/riskRegression/R/FGR.R | 2 riskRegression-2020.12.08/riskRegression/R/IPA.R | 10 riskRegression-2020.12.08/riskRegression/R/RcppExports.R | 36 riskRegression-2020.12.08/riskRegression/R/Score.R | 67 riskRegression-2020.12.08/riskRegression/R/SuperPredictor.R | 6 riskRegression-2020.12.08/riskRegression/R/anova.ate.R |only riskRegression-2020.12.08/riskRegression/R/as.data.table.ate.R | 132 - riskRegression-2020.12.08/riskRegression/R/as.data.table.predictCSC.R | 6 riskRegression-2020.12.08/riskRegression/R/as.data.table.predictCox.R | 29 riskRegression-2020.12.08/riskRegression/R/ate-bootstrap.R | 181 - riskRegression-2020.12.08/riskRegression/R/ate-iid.R | 531 ++--- riskRegression-2020.12.08/riskRegression/R/ate-pointEstimate.R | 442 ++-- riskRegression-2020.12.08/riskRegression/R/ate.R | 1038 +++++----- riskRegression-2020.12.08/riskRegression/R/autoplot.ate.R | 204 + riskRegression-2020.12.08/riskRegression/R/autoplot.predictCSC.R | 71 riskRegression-2020.12.08/riskRegression/R/autoplot.predictCox.R | 441 +++- riskRegression-2020.12.08/riskRegression/R/boxplot.Score.R | 6 riskRegression-2020.12.08/riskRegression/R/calcSeCSC.R | 185 - riskRegression-2020.12.08/riskRegression/R/calcSeCox.R | 193 - riskRegression-2020.12.08/riskRegression/R/confint.ate.R | 583 +++-- riskRegression-2020.12.08/riskRegression/R/confint.influenceTest.R | 12 riskRegression-2020.12.08/riskRegression/R/confint.predictCSC.R | 33 riskRegression-2020.12.08/riskRegression/R/confint.predictCox.R | 44 riskRegression-2020.12.08/riskRegression/R/getComparisons.R | 4 riskRegression-2020.12.08/riskRegression/R/getCoxInfo.R | 67 riskRegression-2020.12.08/riskRegression/R/getResponse.R | 1 riskRegression-2020.12.08/riskRegression/R/iidCox.R | 147 - riskRegression-2020.12.08/riskRegression/R/influenceTest.R | 14 riskRegression-2020.12.08/riskRegression/R/ipcw.R | 4 riskRegression-2020.12.08/riskRegression/R/nobs.R |only riskRegression-2020.12.08/riskRegression/R/plotCalibration.R | 59 riskRegression-2020.12.08/riskRegression/R/plotROC.R | 6 riskRegression-2020.12.08/riskRegression/R/predict.CauseSpecificCox.R | 548 ++--- riskRegression-2020.12.08/riskRegression/R/predictCox.R | 243 +- riskRegression-2020.12.08/riskRegression/R/predictCoxPL.R | 25 riskRegression-2020.12.08/riskRegression/R/predictRisk.R | 356 ++- riskRegression-2020.12.08/riskRegression/R/predictRisk.party.R | 22 riskRegression-2020.12.08/riskRegression/R/print.IPA.R | 32 riskRegression-2020.12.08/riskRegression/R/print.Score.R | 99 riskRegression-2020.12.08/riskRegression/R/print.ate.R | 148 + riskRegression-2020.12.08/riskRegression/R/riskLevelPlot.R | 5 riskRegression-2020.12.08/riskRegression/R/riskRegression-package.R | 7 riskRegression-2020.12.08/riskRegression/R/subjectWeights.R | 2 riskRegression-2020.12.08/riskRegression/R/summary.Score.R | 201 + riskRegression-2020.12.08/riskRegression/R/summary.ate.R | 499 ++-- riskRegression-2020.12.08/riskRegression/R/transform.R | 469 +++- riskRegression-2020.12.08/riskRegression/R/wglm.R |only riskRegression-2020.12.08/riskRegression/build/vignette.rds |binary riskRegression-2020.12.08/riskRegression/man/CSC.Rd | 10 riskRegression-2020.12.08/riskRegression/man/Ctree.Rd | 3 riskRegression-2020.12.08/riskRegression/man/FGR.Rd | 1 riskRegression-2020.12.08/riskRegression/man/Melanoma.Rd | 6 riskRegression-2020.12.08/riskRegression/man/Paquid.Rd | 6 riskRegression-2020.12.08/riskRegression/man/Score.list.Rd | 25 riskRegression-2020.12.08/riskRegression/man/SuperPredictor.Rd | 2 riskRegression-2020.12.08/riskRegression/man/anova.ate.Rd |only riskRegression-2020.12.08/riskRegression/man/as.data.table.ate.Rd | 13 riskRegression-2020.12.08/riskRegression/man/ate.Rd | 186 + riskRegression-2020.12.08/riskRegression/man/autoplot.ate.Rd | 80 riskRegression-2020.12.08/riskRegression/man/autoplot.predictCSC.Rd | 40 riskRegression-2020.12.08/riskRegression/man/autoplot.predictCox.Rd | 80 riskRegression-2020.12.08/riskRegression/man/calcSeCSC.Rd | 2 riskRegression-2020.12.08/riskRegression/man/calcSeCox.Rd | 6 riskRegression-2020.12.08/riskRegression/man/confint.ate.Rd | 55 riskRegression-2020.12.08/riskRegression/man/confint.influenceTest.Rd | 4 riskRegression-2020.12.08/riskRegression/man/confint.predictCSC.Rd | 4 riskRegression-2020.12.08/riskRegression/man/confint.predictCox.Rd | 6 riskRegression-2020.12.08/riskRegression/man/iid.wglm.Rd |only riskRegression-2020.12.08/riskRegression/man/iidCox.Rd | 27 riskRegression-2020.12.08/riskRegression/man/information.wglm.Rd |only riskRegression-2020.12.08/riskRegression/man/penalizedS3.Rd | 16 riskRegression-2020.12.08/riskRegression/man/plotCalibration.Rd | 12 riskRegression-2020.12.08/riskRegression/man/plotROC.Rd | 2 riskRegression-2020.12.08/riskRegression/man/predict.CauseSpecificCox.Rd | 14 riskRegression-2020.12.08/riskRegression/man/predictCox.Rd | 4 riskRegression-2020.12.08/riskRegression/man/predictRisk.Rd | 23 riskRegression-2020.12.08/riskRegression/man/print.IPA.Rd | 4 riskRegression-2020.12.08/riskRegression/man/print.Score.Rd | 4 riskRegression-2020.12.08/riskRegression/man/print.ate.Rd | 6 riskRegression-2020.12.08/riskRegression/man/riskLevelPlot.Rd | 5 riskRegression-2020.12.08/riskRegression/man/score.wglm.Rd |only riskRegression-2020.12.08/riskRegression/man/summary.Score.Rd | 3 riskRegression-2020.12.08/riskRegression/man/summary.ate.Rd | 33 riskRegression-2020.12.08/riskRegression/man/transformCIBP.Rd | 31 riskRegression-2020.12.08/riskRegression/man/transformIID.Rd | 4 riskRegression-2020.12.08/riskRegression/man/transformT.Rd |only riskRegression-2020.12.08/riskRegression/man/wglm.Rd |only riskRegression-2020.12.08/riskRegression/src/Makevars | 1 riskRegression-2020.12.08/riskRegression/src/Makevars.win | 2 riskRegression-2020.12.08/riskRegression/src/RcppExports.cpp | 270 +- riskRegression-2020.12.08/riskRegression/src/baseHaz.cpp | 4 riskRegression-2020.12.08/riskRegression/src/calcSeCSC.cpp |only riskRegression-2020.12.08/riskRegression/src/calcSeCox.cpp |only riskRegression-2020.12.08/riskRegression/src/confBand.cpp | 242 ++ riskRegression-2020.12.08/riskRegression/src/iidCox.cpp |only riskRegression-2020.12.08/riskRegression/src/predictCIF.cpp | 12 riskRegression-2020.12.08/riskRegression/tests/test-AUC.R | 8 riskRegression-2020.12.08/riskRegression/tests/test-BinomialRegression.R | 6 riskRegression-2020.12.08/riskRegression/tests/test-BrierScore.R | 29 riskRegression-2020.12.08/riskRegression/tests/test-CauseSpecificCoxRegression.R | 1 riskRegression-2020.12.08/riskRegression/tests/test-ate.R | 760 ++++--- riskRegression-2020.12.08/riskRegression/tests/test-boxplotScore.R | 12 riskRegression-2020.12.08/riskRegression/tests/test-iidCox.R | 16 riskRegression-2020.12.08/riskRegression/tests/test-phreg.R | 7 riskRegression-2020.12.08/riskRegression/tests/test-predictCSC.R | 909 ++++---- riskRegression-2020.12.08/riskRegression/tests/test-predictCox.R | 290 +- riskRegression-2020.12.08/riskRegression/tests/test-predictCoxPL.R | 18 riskRegression-2020.12.08/riskRegression/tests/test-predictRisk-TD.R | 6 riskRegression-2020.12.08/riskRegression/tests/test-predictRisk.R | 55 riskRegression-2020.12.08/riskRegression/tests/test-score-bootstrap.R | 77 riskRegression-2020.12.08/riskRegression/tests/test-score.R | 437 +--- riskRegression-2020.12.08/riskRegression/tests/test-summary-score.R |only 127 files changed, 6681 insertions(+), 4763 deletions(-)
More information about riskRegression at CRAN
Permanent link
Title: Quantitative Financial Modelling Framework
Description: Specify, build, trade, and analyse quantitative financial trading strategies.
Author: Jeffrey A. Ryan [aut, cph],
Joshua M. Ulrich [cre, aut],
Wouter Thielen [ctb],
Paul Teetor [ctb],
Steve Bronder [ctb]
Maintainer: Joshua M. Ulrich <josh.m.ulrich@gmail.com>
Diff between quantmod versions 0.4.17 dated 2020-03-31 and 0.4.18 dated 2020-12-09
quantmod-0.4.17/quantmod/tests/test_chartSeries.R |only quantmod-0.4.18/quantmod/DESCRIPTION | 9 - quantmod-0.4.18/quantmod/MD5 | 54 ++++---- quantmod-0.4.18/quantmod/NAMESPACE | 1 quantmod-0.4.18/quantmod/NEWS.md | 42 ++++++ quantmod-0.4.18/quantmod/R/Defaults.R | 136 +++++++++++++++++---- quantmod-0.4.18/quantmod/R/getDividends.R | 11 + quantmod-0.4.18/quantmod/R/getOptionChain.R | 36 ++++- quantmod-0.4.18/quantmod/R/getQuote.R | 34 +++-- quantmod-0.4.18/quantmod/R/getSplits.R | 10 + quantmod-0.4.18/quantmod/R/getSymbols.R | 51 +++---- quantmod-0.4.18/quantmod/R/tools.R | 35 +++++ quantmod-0.4.18/quantmod/R/zzz.R | 4 quantmod-0.4.18/quantmod/build/partial.rdb |binary quantmod-0.4.18/quantmod/man/Defaults.Rd | 6 quantmod-0.4.18/quantmod/man/adjustOHLC.Rd | 2 quantmod-0.4.18/quantmod/man/getDividends.Rd | 7 - quantmod-0.4.18/quantmod/man/getMetals.Rd | 2 quantmod-0.4.18/quantmod/man/getOptionChain.Rd | 2 quantmod-0.4.18/quantmod/man/getSplits.Rd | 7 - quantmod-0.4.18/quantmod/man/getSymbols.FRED.Rd | 2 quantmod-0.4.18/quantmod/man/getSymbols.SQLite.Rd | 2 quantmod-0.4.18/quantmod/man/getSymbols.yahoo.Rd | 2 quantmod-0.4.18/quantmod/man/getSymbols.yahooj.Rd | 2 quantmod-0.4.18/quantmod/tests/test_Defaults.R |only quantmod-0.4.18/quantmod/tests/test_getDividends.R | 5 quantmod-0.4.18/quantmod/tests/test_getSplits.R | 4 quantmod-0.4.18/quantmod/tests/test_getSymbols.R | 134 ++++++++++---------- quantmod-0.4.18/quantmod/tests/tests.R | 69 +++++----- 29 files changed, 446 insertions(+), 223 deletions(-)
Title: Partitioning Using Local Subregions
Description: A method of clustering functional data using
subregion information of the curves. It is intended to supplement the
'fda' and 'fda.usc' packages in functional data object clustering. It
also facilitates the printing and plotting of the results in a tree
format and limits the partitioning candidates into a specific set of
subregions.
Author: Mark Greenwood [aut] (<https://orcid.org/0000-0001-6933-1201>),
Tan Tran [aut, cre] (<https://orcid.org/0000-0001-9881-6339>)
Maintainer: Tan Tran <vinhtantran@gmail.com>
Diff between puls versions 0.1.0 dated 2020-12-02 and 0.1.1 dated 2020-12-09
DESCRIPTION | 11 +++++------ MD5 | 8 ++++---- NEWS.md | 4 ++++ build/partial.rdb |binary inst/doc/puls.html | 32 +++++++++++++++++++------------- 5 files changed, 32 insertions(+), 23 deletions(-)
Title: Interactive Interfaces for Results Exploration
Description: Shiny interfaces and graphical functions for multivariate analysis results exploration.
Author: Julien Barnier [aut, cre]
Maintainer: Julien Barnier <julien.barnier@cnrs.fr>
Diff between explor versions 0.3.6 dated 2020-05-02 and 0.3.7 dated 2020-12-09
DESCRIPTION | 14 MD5 | 58 +- NAMESPACE | 2 NEWS.md | 6 R/explor_multi.R | 14 R/prepare_results_CA.R | 8 R/prepare_results_MASS_mca.R | 6 R/prepare_results_MCA.R | 18 R/prepare_results_PCA.R | 18 R/prepare_results_dudi_coa.R | 8 R/prepare_results_dudi_mca.R | 16 R/prepare_results_dudi_pca.R | 14 R/prepare_results_prcomp.R | 8 R/prepare_results_princomp.R | 8 R/prepare_results_speMCA.R | 16 R/prepare_results_textmodel_ca.R | 4 build/vignette.rds |binary inst/doc/introduction_en.html | 490 +++++++++++++++------ inst/doc/introduction_fr.html | 490 +++++++++++++++------ tests/testthat/test_prepare_results_CA.R | 24 - tests/testthat/test_prepare_results_MASS_mca.R | 2 tests/testthat/test_prepare_results_MCA.R | 4 tests/testthat/test_prepare_results_PCA.R | 34 - tests/testthat/test_prepare_results_dudi.acm.R | 26 - tests/testthat/test_prepare_results_dudi.coa.R | 10 tests/testthat/test_prepare_results_dudi.pca.R | 26 - tests/testthat/test_prepare_results_prcomp.R | 8 tests/testthat/test_prepare_results_princomp.R | 8 tests/testthat/test_prepare_results_speMCA.R | 4 tests/testthat/test_prepare_results_textmodel_ca.R | 7 30 files changed, 933 insertions(+), 418 deletions(-)
Title: Plot Simple Features with 'base' Sensibilities
Description: Resurrects the standard plot for shapes established by the
'base' and 'graphics' packages. This is suited to workflows that require
plotting using the established and traditional idioms of plotting spatially
coincident data where it belongs. This package depends on 'sf' and only replaces
the plot method.
Author: Michael Sumner [aut, cre]
Maintainer: Michael Sumner <mdsumner@gmail.com>
Diff between basf versions 0.1.0 dated 2020-04-15 and 0.2.0 dated 2020-12-09
basf-0.1.0/basf/README.md |only basf-0.2.0/basf/DESCRIPTION | 10 +++++----- basf-0.2.0/basf/MD5 | 14 ++++++++------ basf-0.2.0/basf/NAMESPACE | 1 + basf-0.2.0/basf/NEWS.md |only basf-0.2.0/basf/R/read.R |only basf-0.2.0/basf/inst/WORDLIST | 12 +++++++++++- basf-0.2.0/basf/man/figures/README-example-1.png |binary basf-0.2.0/basf/man/read_ext.Rd |only basf-0.2.0/basf/tests/testthat/test-plot.R | 1 + 10 files changed, 26 insertions(+), 12 deletions(-)
Title: Perform AnchorRegression
Description: Performs AnchorRegression proposed by Rothenhäusler et al. 2020.
The code is adapted from the original paper repository. (<https://github.com/rothenhaeusler/anchor-regression>)
The code was developed independently from the authors of the paper.
Author: Simon Zimmermann
Maintainer: Simon Zimmermann <zimmersi@hu-berlin.de>
Diff between AnchorRegression versions 0.1.0 dated 2020-12-02 and 0.1.1 dated 2020-12-09
DESCRIPTION | 10 ++++----- MD5 | 18 +++++++++-------- NAMESPACE | 2 + NEWS.md | 4 +++ R/anchor_regression.R | 40 +++++++++++++++++++++----------------- R/anchor_stability.R |only README.md | 1 man/anchor_regression.Rd | 14 +++++++------ man/anchor_stability.Rd |only man/examples/AnchorExample.R | 3 +- tests/testthat/test.general_run.R | 3 +- 11 files changed, 57 insertions(+), 38 deletions(-)
More information about AnchorRegression at CRAN
Permanent link
Title: Power Analysis for Meta-Analysis
Description: A simple and effective tool for computing and visualizing statistical power for meta-analysis,
including power analysis of main effects (Jackson & Turner, 2017)<doi:10.1002/jrsm.1240>,
test of homogeneity (Pigott, 2012)<doi:10.1007/978-1-4614-2278-5>, subgroup analysis,
and categorical moderator analysis (Hedges & Pigott, 2004)<doi:10.1037/1082-989X.9.4.426>.
Author: Jason Griffin [aut, cre]
Maintainer: Jason Griffin <jasongriffin138@gmail.com>
Diff between metapower versions 0.2.0 dated 2020-09-19 and 0.2.1 dated 2020-12-09
DESCRIPTION | 12 +- MD5 | 14 +- R/mod_power.R | 3 R/subgroup_power.R | 2 inst/doc/Using-metapower.Rmd | 2 inst/doc/Using-metapower.html | 52 +++++++++- inst/shiny_metapower/rsconnect/shinyapps.io/jason-griffin/shiny_metapower.dcf | 4 vignettes/Using-metapower.Rmd | 2 8 files changed, 71 insertions(+), 20 deletions(-)
Title: Plot Maps from Switzerland by Swiss Federal Statistical Office
Description: At the Swiss Federal Statistical Office (SFSO), spatial maps of Switzerland are available free of charge as 'Cartographic bases for small-scale thematic mapping'. This package contains convenience functions to import ESRI (Environmental Systems Research Institute) shape files using the package 'rgdal' and to plot them easily and quickly without having to worry too much about the technical details.
It contains utilities to combine multiple areas to one single polygon and to find neighbours for single regions. For any point on a map, a special locator can be used to determine to which municipality, district or canton it belongs.
Author: Andri Signorell [aut, cre]
Maintainer: Andri Signorell <andri@signorell.net>
Diff between bfsMaps versions 0.9.4 dated 2020-04-17 and 0.9.5 dated 2020-12-09
bfsMaps-0.9.4/bfsMaps/man/AddLakes.Rd |only bfsMaps-0.9.5/bfsMaps/DESCRIPTION | 11 ++- bfsMaps-0.9.5/bfsMaps/MD5 | 28 +++++---- bfsMaps-0.9.5/bfsMaps/NAMESPACE | 6 +- bfsMaps-0.9.5/bfsMaps/NEWS | 19 ++++++ bfsMaps-0.9.5/bfsMaps/R/bfsMaps.R | 41 ++++++++++--- bfsMaps-0.9.5/bfsMaps/R/loadBfSData.R | 7 ++ bfsMaps-0.9.5/bfsMaps/R/utils.R | 80 ++++++++++++++++++++++++++- bfsMaps-0.9.5/bfsMaps/R/zzz.r | 1 bfsMaps-0.9.5/bfsMaps/build/vignette.rds |binary bfsMaps-0.9.5/bfsMaps/data/d.bfsrg.rda |binary bfsMaps-0.9.5/bfsMaps/data/kt.rda |binary bfsMaps-0.9.5/bfsMaps/man/AddWaters.Rd |only bfsMaps-0.9.5/bfsMaps/man/DownloadBfSMaps.Rd |only bfsMaps-0.9.5/bfsMaps/man/RemoveHoles.Rd |only bfsMaps-0.9.5/bfsMaps/man/RequireMap.Rd | 9 +++ bfsMaps-0.9.5/bfsMaps/man/bfsMaps-package.Rd | 7 ++ 17 files changed, 176 insertions(+), 33 deletions(-)
Title: Tools for Building, Visualizing, and Evaluating Self-Organizing
Maps
Description: A self-organizing map package with three distinguishing features:
(1) Automatic cluster centroid detection and visualization using starbursts.
(2) Maintains two models of the data: (a) a self-organizing map model (b) a centroid based clustering model.
(3) A very efficient stochastic training algorithm based on ideas from tensor algebra.
Author: Lutz Hamel [aut, cre],
Benjamin Ott [aut],
Gregory Breard [aut],
Robert Tatoian [aut],
Michael Eiger [aut],
Vishakh Gopu [aut]
Maintainer: Lutz Hamel <lutzhamel@uri.edu>
Diff between popsom versions 4.3.1 dated 2020-08-29 and 5.0 dated 2020-12-09
popsom-4.3.1/popsom/README.md |only popsom-4.3.1/popsom/man/map.build.Rd |only popsom-4.3.1/popsom/man/map.convergence.Rd |only popsom-4.3.1/popsom/man/map.embed.Rd |only popsom-4.3.1/popsom/man/map.marginal.Rd |only popsom-4.3.1/popsom/man/map.neuron.Rd |only popsom-4.3.1/popsom/man/map.projection.Rd |only popsom-4.3.1/popsom/man/map.significance.Rd |only popsom-4.3.1/popsom/man/map.starburst.Rd |only popsom-4.3.1/popsom/man/map.topo.Rd |only popsom-4.3.1/popsom/man/popsom-deprecated.Rd |only popsom-4.3.1/popsom/man/popsom-internal.Rd |only popsom-4.3.1/popsom/src/popsom_init.c |only popsom-5.0/popsom/DESCRIPTION | 30 popsom-5.0/popsom/MD5 | 31 popsom-5.0/popsom/NAMESPACE | 39 popsom-5.0/popsom/NEWS.md | 14 popsom-5.0/popsom/R/map-utils.R | 3738 ++++++++++++--------------- popsom-5.0/popsom/man/fitted.map.Rd |only popsom-5.0/popsom/man/map.Rd |only popsom-5.0/popsom/man/marginal.map.Rd |only popsom-5.0/popsom/man/position.map.Rd |only popsom-5.0/popsom/man/predict.map.Rd |only popsom-5.0/popsom/man/significance.map.Rd |only popsom-5.0/popsom/man/starburst.map.Rd |only popsom-5.0/popsom/src/init.c |only popsom-5.0/popsom/src/vsom.f90 | 15 27 files changed, 1846 insertions(+), 2021 deletions(-)
Title: Analysis of Plant Pathogen Pathotype Complexities, Distributions
and Diversity
Description: Analysis of plant pathogen pathotype survey data. Functions
provided calculate distribution of susceptibilities, distribution of
complexities with statistics, pathotype frequency distribution, as well as
diversity indices for pathotypes. This package is meant to be a direct
replacement for Herrmann, Löwer and Schachtel's (1999)
<doi:10.1046/j.1365-3059.1999.00325.x> Habgood-Gilmour Spreadsheet, 'HaGiS',
previously used for pathotype analysis.
Author: Austin G. McCoy [aut, ccp] (<https://orcid.org/0000-0003-2483-4184>),
Zachary Noel [aut, ccp] (<https://orcid.org/0000-0001-6375-8300>),
Adam H. Sparks [aut, cre] (<https://orcid.org/0000-0002-0061-8359>),
Martin Chilvers [aut] (<https://orcid.org/0000-0001-8832-1666>),
Zhian N. Kamvar [ctb, rev] (<https://orcid.org/0000-0003-1458-7108>),
Michigan Soybean Promotion Committee [fnd],
Project GREEEN [fnd],
North Central Soybean Research Program [fnd],
GRDC Project DAQ00186 [fnd]
Maintainer: Adam H. Sparks <adamhsparks@gmail.com>
Diff between hagis versions 3.1.0 dated 2020-10-07 and 3.1.1 dated 2020-12-09
DESCRIPTION | 10 MD5 | 29 +- NEWS.md | 10 R/create_binary_matrix.R | 2 R/internal_functions.R | 4 README.md | 8 build/vignette.rds |binary inst/doc/betadiversity.R | 5 inst/doc/betadiversity.Rmd | 13 - inst/doc/betadiversity.html | 442 ++++++++------------------------------ inst/doc/hagis.html | 223 +------------------ man/create_binary_matrix.Rd | 2 man/hagis-package.Rd | 2 tests/testthat.R | 1 tests/testthat/helper_functions.R |only vignettes/betadiversity.Rmd | 13 - 16 files changed, 173 insertions(+), 591 deletions(-)