Title: Geospatial Kriging with Metropolis Sampling
Description: Estimates kriging models for geographical point-referenced data. Method is described in Gill (2020) <doi:10.1177/1532440020930197>.
Author: Jason S. Byers [aut, cre], Le Bao [aut], Jamie Carson [aut], Jeff Gill [aut]
Maintainer: Jason S. Byers <jaybyers55@gmail.com>
Diff between krige versions 0.5.7 dated 2020-09-22 and 0.6.1 dated 2020-12-14
krige-0.5.7/krige/R/exponential.semivariogram.R |only krige-0.5.7/krige/R/geweke.R |only krige-0.5.7/krige/R/heidel.welch.R |only krige-0.5.7/krige/R/krige.pred.R |only krige-0.5.7/krige/R/krige.update.R |only krige-0.5.7/krige/man/exponential.semivariogram.Rd |only krige-0.5.7/krige/man/krige.pred.Rd |only krige-0.5.7/krige/man/krige.update.Rd |only krige-0.6.1/krige/DESCRIPTION | 15 krige-0.6.1/krige/MD5 | 69 ++- krige-0.6.1/krige/NAMESPACE | 91 ++++ krige-0.6.1/krige/R/RcppExports.R | 10 krige-0.6.1/krige/R/data.R |only krige-0.6.1/krige/R/diagnostics.R |only krige-0.6.1/krige/R/krige.R |only krige-0.6.1/krige/R/krige.posterior.R | 86 ++++ krige-0.6.1/krige/R/mcmc.samples.R |only krige-0.6.1/krige/R/metropolis.krige.R | 391 ++++++++++++++++----- krige-0.6.1/krige/R/prediction.R |only krige-0.6.1/krige/R/semivariance.R |only krige-0.6.1/krige/R/semivariogram.R | 380 +++++++++++++++++++- krige-0.6.1/krige/R/summary.R |only krige-0.6.1/krige/R/update.R |only krige-0.6.1/krige/R/utils.R |only krige-0.6.1/krige/man/ContrivedData.Rd | 79 ++-- krige-0.6.1/krige/man/NY_subset.Rd | 193 ++++------ krige-0.6.1/krige/man/NYcity_subset.Rd | 227 +++++------- krige-0.6.1/krige/man/WVwells.Rd | 211 ++++++----- krige-0.6.1/krige/man/as.matrix.semivariance.Rd |only krige-0.6.1/krige/man/as.mcmc.krige.Rd |only krige-0.6.1/krige/man/burnin.Rd |only krige-0.6.1/krige/man/congCombined.Rd | 112 +++--- krige-0.6.1/krige/man/exponential.semivariance.Rd |only krige-0.6.1/krige/man/geweke.Rd | 130 +++--- krige-0.6.1/krige/man/heidel.welch.Rd | 118 +++--- krige-0.6.1/krige/man/krige.Rd |only krige-0.6.1/krige/man/krige.posterior.Rd | 150 +++++--- krige-0.6.1/krige/man/lowerCombined.Rd | 96 ++--- krige-0.6.1/krige/man/mcmc.samples.Rd |only krige-0.6.1/krige/man/metropolis.krige.Rd | 304 ++++++++++------ krige-0.6.1/krige/man/predict.krige.Rd |only krige-0.6.1/krige/man/semivariance.Rd |only krige-0.6.1/krige/man/semivariogram.Rd | 214 +++++++++-- krige-0.6.1/krige/man/stateCombined.Rd | 102 ++--- krige-0.6.1/krige/man/summary.krige.Rd |only krige-0.6.1/krige/man/update.krige.Rd |only krige-0.6.1/krige/man/upperCombined.Rd | 99 ++--- krige-0.6.1/krige/src/Makevars | 8 krige-0.6.1/krige/src/kmat_functions.cpp | 2 49 files changed, 2100 insertions(+), 987 deletions(-)
Title: SPArse Matrix
Description: Set of functions for sparse matrix algebra.
Differences with other sparse matrix packages are:
(1) we only support (essentially) one sparse matrix format,
(2) based on transparent and simple structure(s),
(3) tailored for MCMC calculations within G(M)RF.
(4) and it is fast and scalable (with the extension package spam64).
Documentation about 'spam' is provided by vignettes included in this package, see also Furrer and Sain (2010) <doi:10.18637/jss.v036.i10>; see 'citation("spam")' for details.
Author: Reinhard Furrer [aut, cre] (<https://orcid.org/0000-0002-6319-2332>),
Florian Gerber [aut] (<https://orcid.org/0000-0001-8545-5263>),
Roman Flury [aut] (<https://orcid.org/0000-0002-0349-8698>),
Daniel Gerber [ctb],
Kaspar Moesinger [ctb],
Youcef Saad [ctb] (SPARSEKIT
http://www-users.cs.umn.edu/~saad/software/SPARSKIT/),
Esmond G. Ng [ctb] (Fortran Cholesky routines),
Barry W. Peyton [ctb] (Fortran Cholesky routines),
Joseph W.H. Liu [ctb] (Fortran Cholesky routines),
Alan D. George [ctb] (Fortran Cholesky routines),
Lehoucq B. Rich [ctb] (ARPACK),
Maschhoff Kristi [ctb] (ARPACK),
Sorensen C. Danny [ctb] (ARPACK),
Yang Chao [ctb] (ARPACK)
Maintainer: Reinhard Furrer <reinhard.furrer@math.uzh.ch>
Diff between spam versions 2.5-1 dated 2019-12-12 and 2.6-0 dated 2020-12-14
spam-2.5-1/spam/man/coerce.Rd |only spam-2.5-1/spam/man/coercion.Rd |only spam-2.5-1/spam/man/cov.Rd |only spam-2.5-1/spam/man/defunct.Rd |only spam-2.5-1/spam/man/germany.Rd |only spam-2.5-1/spam/man/headtail.Rd |only spam-2.5-1/spam/man/lu.tri.Rd |only spam-2.5-1/spam/man/math.Rd |only spam-2.5-1/spam/man/math2.Rd |only spam-2.5-1/spam/man/operations.Rd |only spam-2.5-1/spam/man/rdist.Rd |only spam-2.5-1/spam/man/rowcolstats.Rd |only spam-2.5-1/spam/man/solve.Rd |only spam-2.5-1/spam/man/spam.creation.Rd |only spam-2.5-1/spam/man/summary.Rd |only spam-2.5-1/spam/man/xybind.Rd |only spam-2.6-0/spam/DESCRIPTION | 29 spam-2.6-0/spam/MD5 | 108 - spam-2.6-0/spam/NAMESPACE | 6 spam-2.6-0/spam/NEWS.md | 13 spam-2.6-0/spam/R/definitions.R | 103 + spam-2.6-0/spam/R/foreign.R | 44 spam-2.6-0/spam/R/gmult.R |only spam-2.6-0/spam/build/vignette.rds |binary spam-2.6-0/spam/inst/CITATION | 8 spam-2.6-0/spam/inst/demodata/germany.adjacency | 1084 +++++++------- spam-2.6-0/spam/inst/doc/spam.R | 26 spam-2.6-0/spam/inst/doc/spam.pdf |binary spam-2.6-0/spam/man/Coercion.Rd |only spam-2.6-0/spam/man/Math.Rd |only spam-2.6-0/spam/man/Math2.Rd |only spam-2.6-0/spam/man/Oral.Rd | 2 spam-2.6-0/spam/man/Summary.Rd |only spam-2.6-0/spam/man/UScounties.Rd | 2 spam-2.6-0/spam/man/adjacency.Rd | 15 spam-2.6-0/spam/man/cbind.Rd |only spam-2.6-0/spam/man/chol.Rd | 3 spam-2.6-0/spam/man/coerce-methods.Rd |only spam-2.6-0/spam/man/covmat.Rd |only spam-2.6-0/spam/man/diff.Rd | 5 spam-2.6-0/spam/man/eigen.Rd | 2 spam-2.6-0/spam/man/fields-wrapper.Rd |only spam-2.6-0/spam/man/figures |only spam-2.6-0/spam/man/foreign.Rd | 20 spam-2.6-0/spam/man/germany.plot.Rd |only spam-2.6-0/spam/man/germanydata.Rd | 2 spam-2.6-0/spam/man/gmult.Rd |only spam-2.6-0/spam/man/head.Rd |only spam-2.6-0/spam/man/image.Rd | 1 spam-2.6-0/spam/man/import.Rd | 2 spam-2.6-0/spam/man/kronecker.Rd | 6 spam-2.6-0/spam/man/lower.tri.Rd |only spam-2.6-0/spam/man/print.Rd | 16 spam-2.6-0/spam/man/random.Rd | 2 spam-2.6-0/spam/man/rowSums.Rd |only spam-2.6-0/spam/man/spam-class.Rd | 10 spam-2.6-0/spam/man/spam-defunct.Rd |only spam-2.6-0/spam/man/spam-operations.Rd |only spam-2.6-0/spam/man/spam-package.Rd | 12 spam-2.6-0/spam/man/spam-solve.Rd |only spam-2.6-0/spam/man/spam.Rd |only spam-2.6-0/spam/man/triplet.Rd | 6 spam-2.6-0/spam/src/gmult.f |only spam-2.6-0/spam/src/init.c | 2 spam-2.6-0/spam/tests/demo_article-jss-example1.Rout.save | 8 spam-2.6-0/spam/tests/demo_article-jss-example2.Rout.save | 8 spam-2.6-0/spam/tests/demo_article-jss.Rout.save | 8 spam-2.6-0/spam/tests/demo_cholesky.Rout.save | 8 spam-2.6-0/spam/tests/demo_jss15-BYM.Rout.save | 8 spam-2.6-0/spam/tests/demo_jss15-Leroux.Rout.save | 8 spam-2.6-0/spam/tests/demo_spam.Rout.save | 8 spam-2.6-0/spam/tests/demo_timing.Rout.save | 8 spam-2.6-0/spam/tests/jss_areal_counts.Rout.save | 8 73 files changed, 863 insertions(+), 738 deletions(-)
Title: Diagnostic Tools for Hierarchical (Multilevel) Linear Models
Description: A suite of diagnostic tools for hierarchical
(multilevel) linear models. The tools include
not only leverage and traditional deletion diagnostics (Cook's
distance, covratio, covtrace, and MDFFITS) but also
convenience functions and graphics for residual analysis. Models
can be fit using either lmer in the 'lme4' package or lme in the 'nlme' package.
Author: Adam Loy [cre, aut],
Jaylin Lowe [aut],
Jack Moran [aut]
Maintainer: Adam Loy <loyad01@gmail.com>
Diff between HLMdiag versions 0.3.1 dated 2015-12-12 and 0.4.0 dated 2020-12-14
DESCRIPTION | 31 + MD5 | 123 ++++--- NAMESPACE | 117 +++++-- NEWS | 35 ++ R/HLMdiag-deprecated.R |only R/HLMdiag-package.R |only R/HLMresid.R | 11 R/LSresids.R | 362 +++++++++++++++++---- R/adjust_formula_lmList.R | 466 ++++++++++++---------------- R/ahd.R | 2 R/case_delete.R | 613 +++++++++++++++++++++---------------- R/diagnostic_functions.R | 20 - R/group_level_residual_functions.R | 4 R/help.R | 50 ++- R/hlm_augment.R |only R/hlm_influence.R |only R/hlm_resid.R |only R/influence_functions.R | 522 +++++++++++++++++++------------ R/plot_functions.R | 281 +++++++++------- R/pull_resid.R |only R/quantile_functions.R | 7 R/rotate_ranefs.R | 3 R/utility_functions.R | 190 +++++++++++ README.md | 207 +++++++++++- build |only inst/CITATION | 40 +- inst/doc |only inst/image |only man/HLMdiag-deprecated.Rd |only man/HLMdiag.Rd | 35 +- man/HLMresid.mer.Rd | 62 +-- man/LSresids.mer.Rd | 25 - man/adjust_lmList.formula.Rd | 7 man/ahd.Rd | 21 - man/autism.Rd | 31 - man/case_delete.mer.Rd | 68 ++-- man/compare_eb_ls.Rd | 14 man/cooks.distance.Rd | 84 ++--- man/covratio.Rd | 65 +-- man/diagnostics.Rd | 27 - man/dotplot_diag.Rd | 69 ++-- man/extract_design.Rd |only man/ggplot_qqnorm.Rd | 9 man/group_qqnorm.Rd | 15 man/hlm_augment.lmerMod.Rd |only man/hlm_influence.lmerMod.Rd |only man/hlm_resid.lmerMod.Rd |only man/leverage.mer.Rd | 49 +- man/pull_resid.lmerMod.Rd |only man/radon.Rd | 15 man/rotate_ranef.mer.Rd | 33 - man/rvc.mer.Rd | 41 +- man/varcomp.mer.Rd | 7 man/wages.Rd | 8 src/HLMdiag_init.c |only src/Makevars | 5 src/Makevars.win | 5 src/cooksd_obs.cpp | 3 src/cooksd_subset.cpp | 3 src/covratio.cpp | 3 src/covtrace.cpp | 3 src/linear_algebra_fnc.cpp | 3 src/mdffits_subset.cpp | 3 tests |only vignettes |only 65 files changed, 2371 insertions(+), 1426 deletions(-)
Title: Multivariate Tests for the Vector of Means
Description: This is a statistical tool interactive that provides multivariate statistical tests that are more powerful than traditional Hotelling T2 test and LRT (likelihood ratio test) for the vector of normal mean populations with and without contamination and non-normal populations (Henrique J. P. Alves & Daniel F. Ferreira (2019) <DOI: 10.1080/03610918.2019.1693596>).
Author: Henrique Jose de Paula Alves [aut, cre],
Ben Deivide de Oliveira Batista [ctb],
Daniel Furtado Ferreira [aut]
Maintainer: Henrique Jose de Paula Alves <jpahenrique@gmail.com>
Diff between TVMM versions 3.2 dated 2020-10-07 and 3.2.1 dated 2020-12-14
DESCRIPTION | 11 MD5 | 6 NAMESPACE | 1 R/guiTVMM.R | 3822 ++++++++++++++++++++++++++++++------------------------------ 4 files changed, 1922 insertions(+), 1918 deletions(-)
Title: Load US Census Boundary and Attribute Data as 'tidyverse' and
'sf'-Ready Data Frames
Description: An integrated R interface to the decennial US Census and American Community Survey APIs and
the US Census Bureau's geographic boundary files. Allows R users to return Census and ACS data as
tidyverse-ready data frames, and optionally returns a list-column with feature geometry for all Census
geographies.
Author: Kyle Walker [aut, cre],
Matt Herman [aut],
Kris Eberwein [ctb]
Maintainer: Kyle Walker <kyle@walker-data.com>
Diff between tidycensus versions 0.10.2 dated 2020-09-28 and 0.11 dated 2020-12-14
DESCRIPTION | 8 +- MD5 | 30 ++++----- R/acs.R | 150 +++++++++++++++++++++++++++--------------------- R/census.R | 47 ++++++--------- R/estimates.R | 2 R/fips_codes.R | 4 - R/load_data.R | 34 ++++++++-- R/pums.R | 3 R/search_variables.R | 145 +++++++++++++++++++++------------------------- README.md | 7 ++ data/pums_variables.rda |binary man/get_acs.Rd | 94 ++++++++++++++++-------------- man/get_estimates.Rd | 2 man/get_pums.Rd | 3 man/load_variables.Rd | 15 ++-- man/pums_variables.Rd | 6 - 16 files changed, 296 insertions(+), 254 deletions(-)
Title: 64-Bit Extension of the SPArse Matrix R Package 'spam'
Description: Provides the Fortran code of the R package 'spam'
with 64-bit integers. Loading this package together with the R package
spam enables the sparse matrix class spam to handle huge sparse matrices
with more than 2^31-1 non-zero elements.
Documentation is provided in Gerber, Moesinger and Furrer (2017) <doi:10.1016/j.cageo.2016.11.015>.
Author: Reinhard Furrer [aut, cre] (<https://orcid.org/0000-0002-6319-2332>),
Florian Gerber [aut] (<https://orcid.org/0000-0001-8545-5263>),
Roman Flury [aut] (<https://orcid.org/0000-0002-0349-8698>),
Daniel Gerber [ctb],
Kaspar Moesinger [ctb],
Youcef Saad [ctb] (SPARSEKIT
http://www-users.cs.umn.edu/~saad/software/SPARSKIT/),
Esmond G. Ng [ctb] (Fortran Cholesky routines),
Barry W. Peyton [ctb] (Fortran Cholesky routines),
Joseph W.H. Liu [ctb] (Fortran Cholesky routines),
Alan D. George [ctb] (Fortran Cholesky routines),
Lehoucq B. Rich [ctb] (ARPACK),
Maschhoff Kristi [ctb] (ARPACK),
Sorensen C. Danny [ctb] (ARPACK),
Yang Chao [ctb] (ARPACK)
Maintainer: Reinhard Furrer <reinhard.furrer@math.uzh.ch>
Diff between spam64 versions 2.5-1 dated 2019-12-12 and 2.6-0 dated 2020-12-14
DESCRIPTION | 25 ++++++++++++++----------- MD5 | 3 ++- src/gmult.f |only 3 files changed, 16 insertions(+), 12 deletions(-)
Title: Heart Rate Variability Analysis of ECG Data
Description: Allows users to import data files containing heartbeat positions in the most broadly used formats, to remove outliers or points with unacceptable physiological values present in the time series, to plot HRV data, and to perform time domain, frequency domain and nonlinear HRV analysis. See Garcia et al. (2017) <DOI:10.1007/978-3-319-65355-6>.
Author: Leandro Rodriguez-Linares [aut, cre],
Xose Vila [aut],
Maria Jose Lado [aut],
Arturo Mendez [aut],
Abraham Otero [aut],
Constantino Antonio Garcia [aut],
Matti Lassila [ctb]
Maintainer: Leandro Rodriguez-Linares <leandro@uvigo.es>
Diff between RHRV versions 4.2.5 dated 2019-10-30 and 4.2.6 dated 2020-12-14
DESCRIPTION | 18 +- MD5 | 12 - NAMESPACE | 2 R/EditNIHR.R | 64 ++++++---- build/vignette.rds |binary inst/doc/RHRV-quickstart.R | 40 +++--- inst/doc/RHRV-quickstart.html | 263 +++++++++++++++++++++++------------------- 7 files changed, 223 insertions(+), 176 deletions(-)
Title: Data Class and Tools for Handling Spatial-Temporal Data
Description: Data class for increased interoperability working with spatial-
temporal data together with corresponding functions and methods (conversions,
basic calculations and basic data manipulation). The class distinguishes
between spatial, temporal and other dimensions to facilitate the development
and interoperability of tools build for it. Additional features are name-based
addressing of data and internal consistency checks (e.g. checking for the right
data order in calculations).
Author: Jan Philipp Dietrich [aut, cre],
Benjamin Leon Bodirsky [aut],
Markus Bonsch [aut],
Florian Humpenoeder [aut],
Stephen Bi [aut],
Kristine Karstens [aut],
Lavinia Baumstark [ctb],
Christoph Bertram [ctb],
Anastasis Giannousakis [ctb],
David Klein [ctb],
Ina Neher [ctb],
Michaja Pehl [ctb],
Anselm Schultes [ctb],
Miodrag Stevanovic [ctb],
Xiaoxi Wang [ctb],
Felicitas Beier [ctb]
Maintainer: Jan Philipp Dietrich <dietrich@pik-potsdam.de>
Diff between magclass versions 5.7.3 dated 2020-03-02 and 5.15.6 dated 2020-12-14
DESCRIPTION | 21 MD5 | 68 - NAMESPACE | 7 R/as.magpie.R | 77 + R/collapseNames.R | 15 R/coord.R |only R/duplicates_check.R | 11 R/getCPR.R | 4 R/getItems.R | 28 R/lowpass.R | 30 R/magpie-class.R | 59 - R/print.magpie.R | 95 + R/read.magpie.R | 82 - R/read.report.R | 56 + R/replace_non_finite.R |only R/unwrap.R | 2 R/write.magpie.R | 77 - R/write.report2.R | 27 README.md | 59 - inst/doc/magclass-concept.html | 656 +++++++++---- inst/doc/magclass-expansion.html | 550 ++++++++--- inst/doc/magclass.html | 1520 ++++++++++++++++++------------- man/collapseNames.Rd | 6 man/coord.Rd |only man/getItems.Rd | 7 man/magpie-class.Rd | 8 man/print.magpie.Rd | 8 man/read.magpie.Rd | 32 man/read.report.Rd | 46 man/replace_non_finite.Rd |only man/write.magpie.Rd | 48 tests/testthat/test-as.magpie.R | 2 tests/testthat/test-collapseNames.R |only tests/testthat/test-lowpass.R |only tests/testthat/test-magpie.R |only tests/testthat/test-metadata.R |only tests/testthat/test-printmagpie.R |only tests/testthat/test-readwritemagpie.R | 14 tests/testthat/test-replace_non_finite.R |only tests/testthat/test-travisCI.R | 7 40 files changed, 2374 insertions(+), 1248 deletions(-)
Title: Dynamic Documents for R
Description: Convert R Markdown documents into a variety of formats.
Author: JJ Allaire [aut],
Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Jonathan McPherson [aut],
Javier Luraschi [aut],
Kevin Ushey [aut],
Aron Atkins [aut],
Hadley Wickham [aut],
Joe Cheng [aut],
Winston Chang [aut],
Richard Iannone [aut] (<https://orcid.org/0000-0003-3925-190X>),
Andrew Dunning [ctb] (<https://orcid.org/0000-0003-0464-5036>),
Atsushi Yasumoto [ctb, cph] (<https://orcid.org/0000-0002-8335-495X>,
Number sections Lua filter),
Barret Schloerke [ctb],
Christophe Dervieux [ctb],
Frederik Aust [ctb] (<https://orcid.org/0000-0003-4900-788X>),
Jeff Allen [ctb],
JooYoung Seo [ctb] (<https://orcid.org/0000-0002-4064-6012>),
Malcolm Barrett [ctb],
Rob Hyndman [ctb],
Romain Lesur [ctb],
Roy Storey [ctb],
Ruben Arslan [ctb],
Sergio Oller [ctb],
RStudio, PBC [cph],
jQuery Foundation [cph] (jQuery library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/rmd/h/jquery-AUTHORS.txt),
jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in
inst/rmd/h/jqueryui-AUTHORS.txt),
Mark Otto [ctb] (Bootstrap library),
Jacob Thornton [ctb] (Bootstrap library),
Bootstrap contributors [ctb] (Bootstrap library),
Twitter, Inc [cph] (Bootstrap library),
Alexander Farkas [ctb, cph] (html5shiv library),
Scott Jehl [ctb, cph] (Respond.js library),
Ivan Sagalaev [ctb, cph] (highlight.js library),
Greg Franko [ctb, cph] (tocify library),
John MacFarlane [ctb, cph] (Pandoc templates),
Google, Inc. [ctb, cph] (ioslides library),
Dave Raggett [ctb] (slidy library),
W3C [cph] (slidy library),
Dave Gandy [ctb, cph] (Font-Awesome),
Ben Sperry [ctb] (Ionicons),
Drifty [cph] (Ionicons),
Aidan Lister [ctb, cph] (jQuery StickyTabs),
Benct Philip Jonsson [ctb, cph] (pagebreak Lua filter),
Albert Krewinkel [ctb, cph] (pagebreak Lua filter)
Maintainer: Yihui Xie <xie@yihui.name>
Diff between rmarkdown versions 2.5 dated 2020-10-21 and 2.6 dated 2020-12-14
DESCRIPTION | 10 MD5 | 90 ++--- NEWS.md | 39 ++ R/context_document.R | 2 R/github_document.R | 9 R/html_dependencies.R | 8 R/html_document.R | 43 ++ R/html_document_base.R | 3 R/html_vignette.R | 7 R/output_format.R | 13 R/pandoc.R | 8 R/render.R | 35 + R/render_site.R | 31 + R/shiny.R | 15 R/shiny_prerendered.R | 26 + R/util.R | 28 + README.md | 6 build/vignette.rds |binary inst/doc/lua-filters.html | 440 +++++-------------------- inst/doc/rmarkdown.html | 236 ------------- inst/rmd/h/anchor-sections/anchor-sections.css | 1 inst/rmd/h/anchor-sections/anchor-sections.js | 2 inst/rmd/h/default.html | 28 + man/beamer_presentation.Rd | 4 man/context_document.Rd | 6 man/github_document.Rd | 4 man/html_document.Rd | 35 + man/html_fragment.Rd | 4 man/html_vignette.Rd | 4 man/ioslides_presentation.Rd | 4 man/md_document.Rd | 4 man/output_format.Rd | 4 man/pdf_document.Rd | 4 man/pkg_file_lua.Rd | 4 man/powerpoint_presentation.Rd | 4 man/render_site.Rd | 4 man/slidy_presentation.Rd | 4 man/word_document.Rd | 4 tests/testthat/test-formats.R | 29 + tests/testthat/test-formats.Rmd | 8 tests/testthat/test-lua-filters.R | 7 tests/testthat/test-notebook.R | 4 tests/testthat/test-output_format.R | 22 + tests/testthat/test-resources.R | 10 tests/testthat/test-site.R | 34 + tests/testthat/test-vignette.R | 15 46 files changed, 597 insertions(+), 705 deletions(-)
Title: Matching Algorithms in R and C++
Description: Computes matching algorithms quickly using Rcpp.
Implements the Gale-Shapley Algorithm to compute the stable
matching for two-sided markets, such as the stable marriage
problem and the college-admissions problem. Implements Irving's
Algorithm for the stable roommate problem. Implements the top
trading cycle algorithm for the indivisible goods trading problem.
Author: Jan Tilly, Nick Janetos
Maintainer: Jan Tilly <jantilly@gmail.com>
Diff between matchingR versions 1.3.1 dated 2020-12-07 and 1.3.2 dated 2020-12-14
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 4 ++++ build/vignette.rds |binary inst/doc/matchingR-intro.Rmd | 2 +- vignettes/matchingR-intro.Rmd | 2 +- 6 files changed, 15 insertions(+), 11 deletions(-)
Title: Relationship Inference for DNA Mixtures
Description: Makes relationship inference involving DNA mixtures with unknown profiles.
Author: Guro Dorum [aut],
Elias Hernandis [ctb, cre],
Navreet Kaur [ctb],
Thore Egeland [ctb]
Maintainer: Elias Hernandis <eliashernandis@gmail.com>
Diff between relMix versions 1.3.2 dated 2020-11-06 and 1.3.3 dated 2020-12-14
DESCRIPTION | 12 ++++---- MD5 | 10 +++--- NEWS.md | 4 ++ R/relMixGUI.R | 49 ++++++++++++++++++-------------- README.md | 64 ++++++++++++++++++++++++++----------------- inst/doc/relMixVignette.html | 4 +- 6 files changed, 83 insertions(+), 60 deletions(-)
Title: Leaflet Multiple Opacity Controls for R
Description: Extends Leaflet for R by adding widget to control opacity of multiple layers.
Author: Vinícius Zendron [aut],
Meantrix [cre, cph],
Yasunori Kirimoto [ctb, cph] (Leaflet.Control.Opacity JavaScript
library)
Maintainer: Meantrix <dev@meantrix.com>
Diff between leaflet.multiopacity versions 0.1.0 dated 2020-11-30 and 0.1.1 dated 2020-12-14
DESCRIPTION | 6 +- MD5 | 25 ++++----- NEWS.md | 5 + R/multiopacity.R | 7 ++ README.md | 16 +++--- inst/doc/usage-leaflet.R | 2 inst/doc/usage-leaflet.Rmd | 4 - inst/doc/usage-leaflet.html | 45 ++++++++++------- inst/src/Leaflet.Control.Opacity/L.Control.Opacity.css | 14 ++++- inst/src/Leaflet.Control.Opacity/L.Control.Opacity.js | 4 + inst/src/Leaflet.Control.Opacity/images/alpha-2x.png |only inst/src/Leaflet.Control.Opacity/images/alpha.png |binary man/addOpacityControls.Rd | 3 + vignettes/usage-leaflet.Rmd | 4 - 14 files changed, 86 insertions(+), 49 deletions(-)
More information about leaflet.multiopacity at CRAN
Permanent link
Title: Estimate Asymptomatic Cases via Capture/Recapture Methods
Description: Estimate the lower and upper bound of asymptomatic cases in an
epidemic using the capture/recapture methods from Böhning et al. (2020)
<doi:10.1016/j.ijid.2020.06.009> and Rocchetti et al. (2020)
<doi:10.1101/2020.07.14.20153445>.
Author: Hugo Gruson [cre, aut, cph] (<https://orcid.org/0000-0002-4094-1476>)
Maintainer: Hugo Gruson <hugo.gruson+R@normalesup.org>
Diff between asymptor versions 0.2 dated 2020-10-22 and 1.0 dated 2020-12-14
asymptor-0.2/asymptor/man/custom_lag.Rd |only asymptor-1.0/asymptor/DESCRIPTION | 11 asymptor-1.0/asymptor/MD5 | 33 - asymptor-1.0/asymptor/NEWS.md | 15 asymptor-1.0/asymptor/R/custom_lag.R | 12 asymptor-1.0/asymptor/R/estimate_asympto.R | 33 - asymptor-1.0/asymptor/README.md | 10 asymptor-1.0/asymptor/build/partial.rdb |binary asymptor-1.0/asymptor/inst/CITATION | 16 asymptor-1.0/asymptor/inst/WORDLIST | 11 asymptor-1.0/asymptor/inst/doc/example.R | 2 asymptor-1.0/asymptor/inst/doc/example.Rmd | 2 asymptor-1.0/asymptor/inst/doc/example.html | 324 ----------- asymptor-1.0/asymptor/inst/extdata/covid19_germany.rds |binary asymptor-1.0/asymptor/inst/extdata/covid19_italy.rds |binary asymptor-1.0/asymptor/man/estimate_asympto.Rd | 15 asymptor-1.0/asymptor/tests/testthat/test-estimate_asympto.R | 23 asymptor-1.0/asymptor/vignettes/example.Rmd | 2 18 files changed, 149 insertions(+), 360 deletions(-)
Title: Import Professional Baseball Data from 'Retrosheet'
Description: A collection of tools to import and structure the (currently) single-season
event, game-log, roster, and schedule data available from <https://www.retrosheet.org>.
In particular, the event (a.k.a. play-by-play) files can be especially difficult to parse.
This package does the parsing on those files, returning the requested data in the most
practical R structure to use for sabermetric or other analyses.
Author: Colin Douglas [aut, cre, cph],
Richard Scriven [aut, cph]
Maintainer: Colin Douglas <colin@douglas.science>
Diff between retrosheet versions 1.1.2 dated 2020-05-15 and 1.1.3 dated 2020-12-14
DESCRIPTION | 23 +++++++++----------- MD5 | 28 +++++++++++++----------- NEWS.md | 5 ++++ R/getParkIDs.R | 2 - R/getPartialGamelog.R | 2 - R/getRetrosheet.R | 2 - R/getTeamIDs.R | 2 - R/get_retrosheet.R | 2 - README.md | 4 +-- man/getRetrosheet.Rd | 2 - man/get_retrosheet.Rd | 2 - tests/testthat/test-getParkIDs.R | 41 +++++++++++++++++++++++++++++++++++- tests/testthat/test-getRetrosheet.R | 31 ++++++++++++++++++--------- tests/testthat/test-getTeamIDs.R | 23 ++++++++++++++++++-- tests/testthat/test-rmarkdown.R |only tests/testthat/test-rmarkdown.Rmd |only 16 files changed, 122 insertions(+), 47 deletions(-)
Title: Efficient Sequential and Batch Estimation of Univariate and
Bivariate Probability Density Functions and Cumulative
Distribution Functions along with Quantiles (Univariate) and
Spearman's Correlation (Bivariate)
Description: Facilitates estimation of full univariate and bivariate
probability density functions and cumulative distribution functions along with
full quantile functions (univariate) and Spearman's rank correlation
(bivariate) using Hermite series based estimators. These estimators are
particularly useful in the sequential setting (both stationary and
non-stationary) and one-pass batch estimation setting for large data sets.
Based on: Stephanou, Michael, Varughese, Melvin and Macdonald, Iain. "Sequential quantiles via Hermite series density estimation." Electronic Journal of Statistics 11.1 (2017): 570-607 <doi:10.1214/17-EJS1245>,
Stephanou, Michael and Varughese, Melvin. "On the properties of Hermite series based distribution function estimators." Metrika (2020) <doi:10.1007/s00184-020-00785-z> and Stephanou, Michael and Varughese, Melvin. "Sequential Estimation of Nonparametric Correlation using Hermite Series Estimators." arXiv Preprint (2020) <arXiv:2012.06287>.
Author: Michael Stephanou [aut, cre],
Melvin Varughese [ctb]
Maintainer: Michael Stephanou <michael.stephanou@gmail.com>
Diff between hermiter versions 1.0.0 dated 2020-09-10 and 2.0.0 dated 2020-12-14
hermiter-1.0.0/hermiter/man/combine_hermite.Rd |only hermiter-1.0.0/hermiter/man/combine_pair.Rd |only hermiter-1.0.0/hermiter/man/cum_prob_quantile_helper.Rd |only hermiter-1.0.0/hermiter/man/get_coefficients.Rd |only hermiter-1.0.0/hermiter/man/hermite_integral_val_quantile_adap.Rd |only hermiter-1.0.0/hermiter/man/quantile_helper.Rd |only hermiter-1.0.0/hermiter/man/standardize_value.Rd |only hermiter-2.0.0/hermiter/DESCRIPTION | 30 hermiter-2.0.0/hermiter/MD5 | 97 hermiter-2.0.0/hermiter/NAMESPACE | 49 hermiter-2.0.0/hermiter/NEWS.md | 37 hermiter-2.0.0/hermiter/R/RcppExports.R | 38 hermiter-2.0.0/hermiter/R/hermite_estimator.R | 604 - hermiter-2.0.0/hermiter/R/hermite_estimator_bivar.R |only hermiter-2.0.0/hermiter/R/hermite_estimator_univar.R |only hermiter-2.0.0/hermiter/R/sysdata.rda |only hermiter-2.0.0/hermiter/R/utils.R |only hermiter-2.0.0/hermiter/README.md | 512 + hermiter-2.0.0/hermiter/build/partial.rdb |binary hermiter-2.0.0/hermiter/build/vignette.rds |binary hermiter-2.0.0/hermiter/inst/doc/hermiter.R | 268 hermiter-2.0.0/hermiter/inst/doc/hermiter.Rmd | 423 - hermiter-2.0.0/hermiter/inst/doc/hermiter.html | 3851 +--------- hermiter-2.0.0/hermiter/man/cum_prob.Rd | 29 hermiter-2.0.0/hermiter/man/cum_prob.hermite_estimator_bivar.Rd |only hermiter-2.0.0/hermiter/man/cum_prob.hermite_estimator_univar.Rd |only hermiter-2.0.0/hermiter/man/dens.Rd | 21 hermiter-2.0.0/hermiter/man/dens.hermite_estimator_bivar.Rd |only hermiter-2.0.0/hermiter/man/dens.hermite_estimator_univar.Rd |only hermiter-2.0.0/hermiter/man/gauss_hermite_quad_100.Rd |only hermiter-2.0.0/hermiter/man/hermite_estimator.Rd | 90 hermiter-2.0.0/hermiter/man/hermite_estimator_bivar.Rd |only hermiter-2.0.0/hermiter/man/hermite_estimator_univar.Rd |only hermiter-2.0.0/hermiter/man/hermite_function_N.Rd |only hermiter-2.0.0/hermiter/man/hermite_int_full_domain.Rd |only hermiter-2.0.0/hermiter/man/hermite_int_lower.Rd |only hermiter-2.0.0/hermiter/man/hermite_int_upper.Rd |only hermiter-2.0.0/hermiter/man/hermite_integral_val.Rd | 2 hermiter-2.0.0/hermiter/man/hermite_integral_val_upper.Rd |only hermiter-2.0.0/hermiter/man/hermite_polynomial.Rd |only hermiter-2.0.0/hermiter/man/merge_hermite.Rd |only hermiter-2.0.0/hermiter/man/merge_hermite_bivar.Rd |only hermiter-2.0.0/hermiter/man/merge_hermite_univar.Rd |only hermiter-2.0.0/hermiter/man/merge_moments_and_count_bivar.Rd |only hermiter-2.0.0/hermiter/man/merge_moments_and_count_univar.Rd |only hermiter-2.0.0/hermiter/man/merge_pair.Rd |only hermiter-2.0.0/hermiter/man/merge_pair.hermite_estimator_bivar.Rd |only hermiter-2.0.0/hermiter/man/merge_pair.hermite_estimator_univar.Rd |only hermiter-2.0.0/hermiter/man/merge_standardized_helper_bivar.Rd |only hermiter-2.0.0/hermiter/man/merge_standardized_helper_univar.Rd |only hermiter-2.0.0/hermiter/man/quant.Rd | 12 hermiter-2.0.0/hermiter/man/quant.hermite_estimator_univar.Rd |only hermiter-2.0.0/hermiter/man/spearmans.Rd |only hermiter-2.0.0/hermiter/man/spearmans.hermite_estimator_bivar.Rd |only hermiter-2.0.0/hermiter/man/update_batch.Rd | 58 hermiter-2.0.0/hermiter/man/update_batch.hermite_estimator_bivar.Rd |only hermiter-2.0.0/hermiter/man/update_batch.hermite_estimator_univar.Rd |only hermiter-2.0.0/hermiter/man/update_sequential.Rd | 54 hermiter-2.0.0/hermiter/man/update_sequential.hermite_estimator_bivar.Rd |only hermiter-2.0.0/hermiter/man/update_sequential.hermite_estimator_univar.Rd |only hermiter-2.0.0/hermiter/src/RcppExports.cpp | 39 hermiter-2.0.0/hermiter/src/hermite_utils.cpp | 67 hermiter-2.0.0/hermiter/tests/testthat/test_hermite_estimator.R | 292 hermiter-2.0.0/hermiter/tests/testthat/test_hermite_estimator_bivar.R |only hermiter-2.0.0/hermiter/vignettes/cdf_bivar_static.png |only hermiter-2.0.0/hermiter/vignettes/cdf_static.png |binary hermiter-2.0.0/hermiter/vignettes/hermiter.Rmd | 423 - hermiter-2.0.0/hermiter/vignettes/pdf_bivar_static.png |only hermiter-2.0.0/hermiter/vignettes/pdf_static.png |binary hermiter-2.0.0/hermiter/vignettes/quantile_static.png |binary hermiter-2.0.0/hermiter/vignettes/shiny_stream_example.gif |binary hermiter-2.0.0/hermiter/vignettes/shiny_stream_example2.gif |only 72 files changed, 3028 insertions(+), 3968 deletions(-)
More information about quanteda.textplots at CRAN
Permanent link
Title: TV Show Themes and Color Palettes for 'ggplot2' Graphics
Description: Contains various 'ggplot2' themes and color palettes based on TV shows
such as 'Game of Thrones', 'Brooklyn Nine-Nine', 'Avatar: The Last Airbender',
'Spongebob Squarepants', and more.
Author: Ryo Nakagawara [aut, cre]
Maintainer: Ryo Nakagawara <ryonakagawara@gmail.com>
Diff between tvthemes versions 1.1.0 dated 2019-10-31 and 1.1.1 dated 2020-12-14
DESCRIPTION | 8 +- MD5 | 97 ++++++++++++++++----------------- NEWS.md | 7 ++ README.md | 17 ++++- inst/doc/examples.R | 32 +++++----- inst/doc/examples.html | 17 +++-- inst/doc/fonts-and-colors.R | 6 +- inst/doc/fonts-and-colors.html | 23 ++++--- inst/doc/tvthemes-1_0_0.R | 10 +-- inst/doc/tvthemes-1_0_0.html | 17 +++-- inst/fonts/SpongeBob/LICENSE.txt |only man/attackOnTitan_pal.Rd | 52 ++++++++--------- man/avatarTLA_pal.Rd | 89 ++++++++++++++++++------------ man/avatar_pal.Rd | 89 ++++++++++++++++++------------ man/bigHero6_pal.Rd | 49 ++++++++-------- man/brooklyn99_pal.Rd | 89 ++++++++++++++++++------------ man/gravityFalls_pal.Rd | 52 ++++++++--------- man/hilda_pal.Rd | 60 +++++++++----------- man/kimPossible_pal.Rd | 49 ++++++++-------- man/paintBikiniBottom.Rd | 10 ++- man/parksAndRec_pal.Rd | 49 ++++++++-------- man/rickAndMorty_pal.Rd | 52 ++++++++--------- man/simpsons_pal.Rd | 49 ++++++++-------- man/spongeBob_pal.Rd | 49 ++++++++-------- man/theme_avatar.Rd | 29 +++++++-- man/theme_brooklyn99.Rd | 30 +++++++--- man/theme_hildaDay.Rd | 30 +++++++--- man/theme_hildaDusk.Rd | 30 +++++++--- man/theme_hildaNight.Rd | 30 +++++++--- man/theme_parksAndRec.Rd | 29 +++++++-- man/theme_parksAndRecLight.Rd | 30 +++++++--- man/theme_parksAndRec_light.Rd | 30 +++++++--- man/theme_rickAndMorty.Rd | 29 +++++++-- man/theme_simpsons.Rd | 30 +++++++--- man/theme_spongeBob.Rd | 30 +++++++--- man/theme_theLastAirbender.Rd | 29 +++++++-- man/tvthemes.Rd | 1 man/westeros_pal.Rd | 89 ++++++++++++++++++------------ tests/testthat/test-attackontitan.R | 4 + tests/testthat/test-bighero6.R | 4 + tests/testthat/test-brooklyn99.R | 6 +- tests/testthat/test-gameofthrones.R | 22 ++++--- tests/testthat/test-gravityfalls.R | 4 + tests/testthat/test-hilda.R | 8 +- tests/testthat/test-kimpossible.R | 4 + tests/testthat/test-parksandrec.R | 4 + tests/testthat/test-rickandmorty.R | 4 + tests/testthat/test-simpsons.R | 4 + tests/testthat/test-spongebob.R | 4 + tests/testthat/test-thelastairbender.R | 18 +++--- 50 files changed, 884 insertions(+), 620 deletions(-)
Title: Statistical Tests and Graphics for Hardy-Weinberg Equilibrium
Description: Contains tools for exploring Hardy-Weinberg equilibrium (Hardy, 1908; Weinberg, 1908) <doi:10.1126/science.28.706.49> for bi and multi-allelic genetic marker data. All classical tests (chi-square, exact, likelihood-ratio and permutation tests) with bi-allelic variants are included in the package, as well as functions for power computation and for the simulation of marker data under equilibrium and disequilibrium. Routines for dealing with markers on the X-chromosome are included (Graffelman & Weir, 2016) <doi: 10.1038/hdy.2016.20>, including Bayesian procedures. Some exact and permutation procedures also work with multi-allelic variants. Special test procedures that jointly address Hardy-Weinberg equilibrium and equality of allele frequencies in both sexes are supplied, for the bi and multi-allelic case. Functions for testing equilibrium in the presence of missing data by using multiple imputation are also provided. Implements several graphics for exploring the equilibrium status of a large set of bi-allelic markers: ternary plots with acceptance regions, log-ratio plots and Q-Q plots.
Author: Jan Graffelman [aut, cre],
Christopher Chang [ctb],
Xavi Puig [ctb],
Jan Wigginton [ctb],
Leonardo Ortoleva [ctb],
William R. Engels [ctb]
Maintainer: Jan Graffelman <jan.graffelman@upc.edu>
Diff between HardyWeinberg versions 1.6.9 dated 2020-12-08 and 1.7.0 dated 2020-12-14
HardyWeinberg-1.6.9/HardyWeinberg/R/HWNetwork.R |only HardyWeinberg-1.6.9/HardyWeinberg/man/HWNetwork.Rd |only HardyWeinberg-1.7.0/HardyWeinberg/DESCRIPTION | 8 ++--- HardyWeinberg-1.7.0/HardyWeinberg/MD5 | 16 ++++------ HardyWeinberg-1.7.0/HardyWeinberg/NAMESPACE | 2 - HardyWeinberg-1.7.0/HardyWeinberg/inst/doc/HardyWeinberg.R | 4 +- HardyWeinberg-1.7.0/HardyWeinberg/inst/doc/HardyWeinberg.Rnw | 6 +-- HardyWeinberg-1.7.0/HardyWeinberg/inst/doc/HardyWeinberg.pdf |binary HardyWeinberg-1.7.0/HardyWeinberg/man/HardyWeinberg-package.Rd | 4 +- HardyWeinberg-1.7.0/HardyWeinberg/vignettes/HardyWeinberg.Rnw | 6 +-- 10 files changed, 22 insertions(+), 24 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-08-11 0.2-2
2014-10-20 0.1-3
Title: Analyses of Text using Natural Language Processing and Machine
Learning
Description: Transforms text variables to word embeddings; where the word embeddings are used to statistically test the mean difference between set of texts, compute semantic similarity scores between texts, predict numerical variables, and visual statistically significant words according to various dimensions etc. For more information see <https://www.r-text.org>.
Author: Oscar Kjell [aut, cre] (<https://orcid.org/0000-0002-2728-6278>),
Salvatore Giorgi [aut] (<https://orcid.org/0000-0001-7381-6295>),
Andrew Schwartz [aut] (<https://orcid.org/0000-0002-6383-3339>)
Maintainer: Oscar Kjell <oscar.kjell@psy.lu.se>
Diff between text versions 0.9.0 dated 2020-11-23 and 0.9.10 dated 2020-12-14
DESCRIPTION | 6 MD5 | 37 +- NEWS.md |only R/0_1_globals.R | 1 R/2_1_textTrain.R | 38 -- R/2_2_textTrainRegression.R | 473 ++++++++++++++++++++---------- R/2_3_textTrainRandomForest.R | 311 +++++++++++++------ R/4_1_textPlot.R | 7 R/zzz.R | 2 README.md | 14 inst/doc/Extended_Installation_Guide.html | 90 +++++ inst/doc/text.Rmd | 8 inst/doc/text.html | 3 inst/python/huggingface_Interface3.py | 4 man/figures/README-DPP_plot-1.png |binary man/textTrainRandomForest.Rd | 41 +- man/textTrainRegression.Rd | 51 ++- tests/testthat/test_1_Analyses_flow.R | 5 tests/testthat/test_2_textTrain.R | 156 +++++---- vignettes/text.Rmd | 8 20 files changed, 842 insertions(+), 413 deletions(-)
Title: Core Utilities for Single-Cell RNA-Seq
Description: Core utilities for single-cell RNA-seq data analysis. Contained within are utility functions for working with differential expression (DE) matrices and count matrices, a collection of functions for manipulating and plotting data via 'ggplot2', and functions to work with cell graphs and cell embeddings. Graph-based methods include embedding kNN cell graphs into a UMAP <doi:10.21105/joss.00861>, collapsing vertices of each cluster in the graph, and propagating graph labels.
Author: Peter Kharchenko [aut],
Viktor Petukhov [aut],
Ramus Rydbirk [aut],
Evan Biederstedt [aut, cre]
Maintainer: Evan Biederstedt <evan.biederstedt@gmail.com>
Diff between sccore versions 0.1.0 dated 2020-09-30 and 0.1.1 dated 2020-12-14
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NAMESPACE | 1 + R/data.R | 2 +- R/plots.R | 1 + README.md | 12 ++++++++++++ src/colSumByFac.cpp | 6 ++++-- src/graph_embedding.cpp | 14 ++++++++++++++ src/jsDist.cpp | 5 ++++- 9 files changed, 48 insertions(+), 15 deletions(-)
Title: Fast and Scalable Approximate k-Nearest Neighbor Search Methods
using 'N2' Library
Description: Implements methods to perform fast approximate K-nearest neighbor search on input matrix. Algorithm based on the 'N2' implementation of an approximate nearest neighbor search using hierarchical Navigable Small World (NSW) graphs. The original algorithm is described in "Efficient and Robust Approximate Nearest Neighbor Search Using Hierarchical Navigable Small World Graphs", Y. Malkov and D. Yashunin, <doi:10.1109/TPAMI.2018.2889473>, <arXiv:1603.09320>.
Author: Peter Kharchenko [aut],
Viktor Petukhov [aut],
Dirk Eddelbuettel [ctb],
Evan Biederstedt [cre, aut]
Maintainer: Evan Biederstedt <evan.biederstedt@gmail.com>
Diff between N2R versions 0.1.0 dated 2020-09-29 and 0.1.1 dated 2020-12-14
N2R-0.1.0/N2R/inst/COPYRIGHT |only N2R-0.1.1/N2R/DESCRIPTION | 10 +++++----- N2R-0.1.1/N2R/MD5 | 11 ++++++----- N2R-0.1.1/N2R/README.md | 8 ++++++++ N2R-0.1.1/N2R/inst/COPYRIGHTS |only N2R-0.1.1/N2R/src/Makevars | 2 +- N2R-0.1.1/N2R/src/n2/Makefile | 3 +-- N2R-0.1.1/N2R/src/n2/Makefile.win |only 8 files changed, 21 insertions(+), 13 deletions(-)
Title: A Framework for Various Types of Mortality / Life Tables
Description: Classes to implement and plot cohort life tables
for actuarial calculations. In particular, birth-year dependent mortality
tables using a yearly trend to extrapolate from a base year are implemented,
as well as period life table, cohort life tables using an age shift, and
merged life tables.
Author: Reinhold Kainhofer [aut, cre]
Maintainer: Reinhold Kainhofer <reinhold@kainhofer.com>
Diff between MortalityTables versions 2.0.1 dated 2020-09-07 and 2.0.2 dated 2020-12-14
DESCRIPTION | 14 MD5 | 40 R/ages.R | 4 R/lifeTable.R | 29 R/utilityFunctions.R | 6 README.md | 12 build/vignette.rds |binary inst/doc/international-mortality-tables-overview.R |only inst/doc/international-mortality-tables-overview.Rmd |only inst/doc/international-mortality-tables-overview.html |only inst/doc/using-the-mortalityTables-package.R | 10 inst/doc/using-the-mortalityTables-package.Rmd | 11 inst/doc/using-the-mortalityTables-package.html | 695 +++++----- inst/extdata/MortalityTables_Austria_Census.R | 64 inst/extdata/MortalityTables_Austria_PopulationMCMC.R | 2 inst/extdata/MortalityTables_Austria_VUGesamtbestand_2012-16.R |only inst/extdata/MortalityTables_Germany_Annuities_DAV2004R.R | 4 inst/extdata/MortalityTables_Germany_Census.R | 33 inst/extdata/VU_Gesamtbestand_Austria_Detail_2012-16.csv |only inst/extdata/VU_Gesamtbestand_Austria_Storno_2012-16.csv |only inst/extdata/VU_Gesamtbestand_Austria_qx_2012-16.csv |only man/ages.Rd | 4 man/lifeTable.Rd | 18 vignettes/international-mortality-tables-overview.Rmd |only vignettes/using-the-mortalityTables-package.Rmd | 11 25 files changed, 551 insertions(+), 406 deletions(-)
More information about MortalityTables at CRAN
Permanent link
Title: Fast Fixed-Effects Estimations
Description: Fast and user-friendly estimation of econometric models with multiple fixed-effects. Includes ordinary least squares (OLS), generalized linear models (GLM) and the negative binomial.
The core of the package is based on optimized parallel C++ code, scaling especially well for large data sets. The method to obtain the fixed-effects coefficients is based on Berge (2018) <https://wwwen.uni.lu/content/download/110162/1299525/file/2018_13>.
Further provides tools to export and view the results of several estimations with intuitive design to cluster the standard-errors.
Author: Laurent Berge [aut, cre],
Sebastian Krantz [ctb]
Maintainer: Laurent Berge <laurent.berge@uni.lu>
Diff between fixest versions 0.7.1 dated 2020-10-27 and 0.8.0 dated 2020-12-14
fixest-0.7.1/fixest/man/did_estimate_yearly_effects.Rd |only fixest-0.7.1/fixest/man/did_plot_yearly_effects.Rd |only fixest-0.7.1/fixest/man/errbar.Rd |only fixest-0.7.1/fixest/man/setFixest_print.type.Rd |only fixest-0.8.0/fixest/DESCRIPTION | 17 fixest-0.8.0/fixest/MD5 | 161 fixest-0.8.0/fixest/NAMESPACE | 22 fixest-0.8.0/fixest/NEWS.md | 172 fixest-0.8.0/fixest/R/Deprecated_funs.R | 669 -- fixest-0.8.0/fixest/R/ESTIMATION_FUNS.R | 1851 +++++++- fixest-0.8.0/fixest/R/Lagging.R | 100 fixest-0.8.0/fixest/R/Methods.R | 20 fixest-0.8.0/fixest/R/MiscFuns.R | 3863 ++++++++++++----- fixest-0.8.0/fixest/R/RcppExports.R | 36 fixest-0.8.0/fixest/R/coefplot.R | 24 fixest-0.8.0/fixest/R/etable.R | 1619 +++++-- fixest-0.8.0/fixest/R/femlm.R | 9 fixest-0.8.0/fixest/R/fixest_env.R | 2950 +++++++++--- fixest-0.8.0/fixest/R/fixest_multi.R |only fixest-0.8.0/fixest/R/onLoad.R | 2 fixest-0.8.0/fixest/R/test_fun.R | 86 fixest-0.8.0/fixest/build/vignette.rds |binary fixest-0.8.0/fixest/inst/doc/exporting_tables.R | 130 fixest-0.8.0/fixest/inst/doc/exporting_tables.Rmd | 263 - fixest-0.8.0/fixest/inst/doc/exporting_tables.html | 405 + fixest-0.8.0/fixest/inst/doc/fixest_walkthrough.R | 125 fixest-0.8.0/fixest/inst/doc/fixest_walkthrough.Rmd | 265 - fixest-0.8.0/fixest/inst/doc/fixest_walkthrough.html | 683 ++- fixest-0.8.0/fixest/inst/doc/multiple_estimations.R |only fixest-0.8.0/fixest/inst/doc/multiple_estimations.Rmd |only fixest-0.8.0/fixest/inst/doc/multiple_estimations.html |only fixest-0.8.0/fixest/inst/doc/standard_errors.R | 104 fixest-0.8.0/fixest/inst/doc/standard_errors.Rmd | 58 fixest-0.8.0/fixest/inst/doc/standard_errors.html | 122 fixest-0.8.0/fixest/man/as.list.fixest_multi.Rd |only fixest-0.8.0/fixest/man/base_did.Rd | 3 fixest-0.8.0/fixest/man/bread.fixest.Rd | 50 fixest-0.8.0/fixest/man/cash-.fixest_multi.Rd |only fixest-0.8.0/fixest/man/confint.fixest.Rd | 2 fixest-0.8.0/fixest/man/demean.Rd | 220 fixest-0.8.0/fixest/man/deviance.fixest.Rd | 62 fixest-0.8.0/fixest/man/estfun.fixest.Rd | 50 fixest-0.8.0/fixest/man/etable.Rd | 109 fixest-0.8.0/fixest/man/feNmlm.Rd | 54 fixest-0.8.0/fixest/man/feglm.Rd | 107 fixest-0.8.0/fixest/man/femlm.Rd | 97 fixest-0.8.0/fixest/man/feols.Rd | 166 fixest-0.8.0/fixest/man/fitstat.Rd | 124 fixest-0.8.0/fixest/man/fitstat_register.Rd |only fixest-0.8.0/fixest/man/fitted.fixest.Rd | 4 fixest-0.8.0/fixest/man/fixef.fixest.Rd | 4 fixest-0.8.0/fixest/man/fixest-deprecated.Rd | 26 fixest-0.8.0/fixest/man/fixest.Rd | 50 fixest-0.8.0/fixest/man/formula.fixest.Rd | 4 fixest-0.8.0/fixest/man/hatvalues.fixest.Rd | 62 fixest-0.8.0/fixest/man/i.Rd | 2 fixest-0.8.0/fixest/man/model.matrix.fixest.Rd | 8 fixest-0.8.0/fixest/man/obs2remove.Rd | 6 fixest-0.8.0/fixest/man/predict.fixest.Rd | 4 fixest-0.8.0/fixest/man/print.fixest.Rd | 44 fixest-0.8.0/fixest/man/print.fixest_fitstat.Rd |only fixest-0.8.0/fixest/man/print.fixest_multi.Rd |only fixest-0.8.0/fixest/man/r2.Rd | 10 fixest-0.8.0/fixest/man/rep.fixest.Rd | 118 fixest-0.8.0/fixest/man/resid.fixest.Rd | 14 fixest-0.8.0/fixest/man/sandwich_reexported.Rd | 32 fixest-0.8.0/fixest/man/setFixest_estimation.Rd |only fixest-0.8.0/fixest/man/setFixest_fml.Rd | 204 fixest-0.8.0/fixest/man/setFixest_se.Rd | 99 fixest-0.8.0/fixest/man/sigma.fixest.Rd | 60 fixest-0.8.0/fixest/man/stepwise.Rd |only fixest-0.8.0/fixest/man/style.df.Rd |only fixest-0.8.0/fixest/man/style.tex.Rd |only fixest-0.8.0/fixest/man/sub-.fixest_multi.Rd |only fixest-0.8.0/fixest/man/sub-sub-.fixest_multi.Rd |only fixest-0.8.0/fixest/man/summary.fixest.Rd | 30 fixest-0.8.0/fixest/man/summary.fixest.obs2remove.Rd | 6 fixest-0.8.0/fixest/man/summary.fixest_multi.Rd |only fixest-0.8.0/fixest/man/to_integer.Rd | 144 fixest-0.8.0/fixest/man/vcov.fixest.Rd | 5 fixest-0.8.0/fixest/man/wald.Rd |only fixest-0.8.0/fixest/man/weights.fixest.Rd | 56 fixest-0.8.0/fixest/man/xpd.Rd |only fixest-0.8.0/fixest/src/RcppExports.cpp | 122 fixest-0.8.0/fixest/src/demeaning.cpp | 500 +- fixest-0.8.0/fixest/src/lm_related.cpp | 571 ++ fixest-0.8.0/fixest/src/misc_funs.cpp | 48 fixest-0.8.0/fixest/src/quf.cpp | 338 - fixest-0.8.0/fixest/tests/fixest_tests.R | 397 + fixest-0.8.0/fixest/vignettes/exporting_tables.Rmd | 263 - fixest-0.8.0/fixest/vignettes/fixest_walkthrough.Rmd | 265 - fixest-0.8.0/fixest/vignettes/multiple_estimations.Rmd |only fixest-0.8.0/fixest/vignettes/standard_errors.Rmd | 58 93 files changed, 13584 insertions(+), 4770 deletions(-)
More information about babsim.hospital at CRAN
Permanent link
More information about autoCovariateSelection at CRAN
Permanent link
Title: Read and Write 'las' and 'laz' Binary File Formats Used for
Remote Sensing Data
Description: Read and write 'las' and 'laz' binary file formats. The LAS file format is a public file format for the interchange of 3-dimensional point cloud data between data users. The LAS specifications are approved by the American Society for Photogrammetry and Remote Sensing <https://www.asprs.org/divisions-committees/lidar-division/laser-las-file-format-exchange-activities>. The LAZ file format is an open and lossless compression scheme for binary LAS format versions 1.0 to 1.3 <https://laszip.org/>.
Author: Jean-Romain Roussel [aut, cre, cph],
Florian De Boissieu [aut, ctb] (Enable the support of .lax file and
extra byte attributes),
Martin Isenburg [cph] (Is the author of the LASlib and LASzip
libraries),
David Auty [ctb] (Reviewed the documentation),
Pierrick Marie [ctb] (Helped to compile LASlib code in R),
Tiago de Conto [ctb] (Implemented the -thin_with_voxel filter method)
Maintainer: Jean-Romain Roussel <jean-romain.roussel.1@ulaval.ca>
Diff between rlas versions 1.3.7 dated 2020-11-11 and 1.3.8 dated 2020-12-14
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 4 ++++ src/Makevars | 2 +- src/Makevars.win | 2 +- 5 files changed, 14 insertions(+), 10 deletions(-)
Title: Relational Data Modeler
Description: The aim of this package is to manipulate relational data models in R.
It provides functions to create, modify and export data models in json format.
It also allows importing models created with 'MySQL Workbench' (<https://www.mysql.com/products/workbench/>).
These functions are accessible through a graphical user interface made with 'shiny'.
Constraints such as types, keys, uniqueness and mandatory fields are automatically checked and corrected when editing a model.
Finally, real data can be confronted to a model to check their compatibility.
Author: Patrice Godard
Maintainer: Patrice Godard <patrice.godard@gmail.com>
Diff between ReDaMoR versions 0.4.2 dated 2020-03-31 and 0.4.3 dated 2020-12-14
DESCRIPTION | 8 ++-- MD5 | 29 +++++++-------- NAMESPACE | 6 +++ R/RelDataModel.R | 87 +++++++++++++++++++++++++++++++++------------- R/RelTableModel.R | 17 ++++++++ R/generics.R | 25 +++++++++++++ R/model_relational_data.R | 31 +++++++++++----- build/vignette.rds |binary inst/doc/ReDaMoR.R | 3 + inst/doc/ReDaMoR.Rmd | 4 +- inst/doc/ReDaMoR.html | 68 ++++++++++++++++++++++++++++++----- inst/www/interactions.js | 18 ++++----- man/SUPPTYPES.Rd | 4 +- man/confront_data.Rd | 4 +- man/lengths.Rd |only vignettes/ReDaMoR.Rmd | 4 +- 16 files changed, 233 insertions(+), 75 deletions(-)
Title: Penalized Independent Component Analysis for Univariate
Functional Data
Description: Performs penalized independent component analysis for univariate functional data. Two alternative models are implemented, both based on the fourth order blind identification method.
Author: Marc Vidal, Ana Mª Aguilera
Maintainer: Marc Vidal <marc.vidalbadia@ugent.be>
Diff between pfica versions 0.1.0 dated 2020-09-18 and 0.1.1 dated 2020-12-14
DESCRIPTION | 12 ++-- MD5 | 20 +++--- NAMESPACE | 2 R/ffobi.R | 54 +++++++++++++----- R/kd.R | 6 +- R/kffobi.R | 147 +++++++++++++++++++++++++------------------------- R/pspline.kffobi.R | 19 +++--- man/ffobi.Rd | 17 ++--- man/kd.Rd | 10 ++- man/kffobi.Rd | 10 +-- man/pspline.kffobi.Rd | 20 ++---- 11 files changed, 169 insertions(+), 148 deletions(-)
Title: Create Tidy Data Frames of Marginal Effects for 'ggplot' from
Model Outputs
Description: Compute marginal effects from statistical models and returns the
result as tidy data frames. These data frames are ready to use with the
'ggplot2'-package. Marginal effects can be calculated for many different
models. Interaction terms, splines and polynomial terms are also supported.
The main functions are ggpredict(), ggemmeans() and ggeffect(). There is a
generic plot()-method to plot the results using 'ggplot2'.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>),
Frederik Aust [ctb] (<https://orcid.org/0000-0003-4900-788X>),
Sam Crawley [ctb] (<https://orcid.org/0000-0002-7847-0411>),
Mattan S. Ben-Shachar [ctb] (<https://orcid.org/0000-0002-4287-4801>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between ggeffects versions 1.0.0 dated 2020-11-29 and 1.0.1 dated 2020-12-14
DESCRIPTION | 6 +- MD5 | 56 +++++++++++------------ NAMESPACE | 3 - NEWS.md | 7 ++ R/emmeans_prediction_data.R | 51 ++++++++++++++------ R/get_predictions_glmmTMB.R | 4 - R/get_predictions_lm.R | 25 ++++------ R/get_predictions_survival.R | 2 R/get_predictions_zeroinfl.R | 10 ++-- R/ggemmeans.R | 4 + R/ggemmeans_add_confint.R | 6 +- R/ggemmeans_zi_predictions.R | 2 R/ggpredict.R | 3 - R/predictions.R | 2 R/standard_error_predictions.R | 2 R/utils.R | 13 +++-- build/partial.rdb |binary inst/doc/ggeffects.html | 4 - inst/doc/introduction_effectsatvalues.html | 6 +- inst/doc/introduction_partial_residuals.html | 4 - inst/doc/introduction_plotcustomize.html | 4 - inst/doc/introduction_plotmethod.html | 4 - inst/doc/introduction_randomeffects.html | 4 - inst/doc/practical_logisticmixedmodel.html | 4 - inst/doc/practical_robustestimation.html | 4 - inst/doc/technical_differencepredictemmeans.html | 4 - inst/doc/technical_stata.html | 4 - man/ggpredict.Rd | 18 ++++--- tests/testthat/test-linear-models.R | 4 - 29 files changed, 147 insertions(+), 113 deletions(-)
Title: Estimate Real-Time Case Counts and Time-Varying Epidemiological
Parameters
Description: Estimates the time-varying reproduction number, rate of spread,
and doubling time using a range of open-source tools (Abbott et al. (2020) <doi:10.12688/wellcomeopenres.16006.1>),
and current best practices (Gostic et al. (2020) <doi:10.1101/2020.06.18.20134858>).
It aims to help users avoid some of the limitations of naive implementations in a framework
that is informed by community feedback and is under active development.
Author: Sam Abbott [aut, cre] (<https://orcid.org/0000-0001-8057-8037>),
Joel Hellewell [aut] (<https://orcid.org/0000-0003-2683-0849>),
Katharine Sherratt [aut],
Katelyn Gostic [aut],
Joe Hickson [aut],
Hamada S. Badr [aut] (<https://orcid.org/0000-0002-9808-2344>),
Michael DeWitt [aut] (<https://orcid.org/0000-0001-8940-1967>),
Robin Thompson [aut],
Sophie Meakin [ctb],
James Munday [ctb],
Nikos Bosse [ctb],
Paul Mee [ctb],
Peter Ellis [ctb],
EpiForecasts [aut],
Sebastian Funk [aut]
Maintainer: Sam Abbott <sam.abbott@lshtm.ac.uk>
Diff between EpiNow2 versions 1.3.1 dated 2020-11-22 and 1.3.2 dated 2020-12-14
DESCRIPTION | 54 MD5 | 127 +- NAMESPACE | 10 NEWS.md | 31 R/create.R | 42 R/epinow.R | 8 R/estimate_infections.R | 141 +- R/estimate_secondary.R |only R/estimate_truncation.R | 20 R/extract.R | 124 +- R/get.R | 2 R/opts.R | 47 R/regional_epinow.R | 9 R/report.R | 82 - R/setup.R | 12 R/simulate_infections.R | 14 R/stanmodels.R | 4 R/summarise.R | 24 R/utilities.R | 7 README.md | 2 inst/CITATION | 24 inst/WORDLIST | 4 inst/stan/data/backcalc.stan |only inst/stan/data/rt.stan | 1 inst/stan/data/secondary.stan |only inst/stan/data/simulation_delays.stan |only inst/stan/data/simulation_observation_model.stan |only inst/stan/data/simulation_rt.stan |only inst/stan/estimate_infections.stan | 37 inst/stan/estimate_secondary.stan |only inst/stan/functions/generated_quantities.stan | 24 inst/stan/functions/infections.stan | 15 inst/stan/functions/observation_model.stan | 24 inst/stan/functions/pmfs.stan | 23 inst/stan/functions/rt.stan | 86 - inst/stan/functions/secondary.stan |only inst/stan/simulate_infections.stan | 21 inst/stan/simulate_secondary.stan |only man/EpiNow2-package.Rd | 22 man/allocate_empty.Rd | 4 man/backcalc_opts.Rd | 17 man/create_shifted_cases.Rd | 4 man/create_stan_data.Rd | 2 man/epinow.Rd | 12 man/estimate_infections.Rd | 24 man/estimate_secondary.Rd |only man/estimates_by_report_date.Rd | 2 man/extract_inits.Rd |only man/extract_stan_param.Rd |only man/fit_model_with_nuts.Rd | 5 man/fit_model_with_vb.Rd | 4 man/forecast_secondary.Rd |only man/get_regional_results.Rd | 2 man/gp_opts.Rd | 4 man/init_cumulative_fit.Rd |only man/plot.estimate_secondary.Rd |only man/regional_epinow.Rd | 10 man/report_cases.Rd | 2 man/report_plots.Rd | 6 man/run_region.Rd | 2 man/secondary_opts.Rd |only man/setup_default_logging.Rd | 2 man/setup_logging.Rd | 7 man/stan_opts.Rd | 17 src/RcppExports.cpp | 4 src/stanExports_estimate_infections.h | 1424 +++++++++++------------ src/stanExports_estimate_secondary.cc |only src/stanExports_estimate_secondary.h |only src/stanExports_estimate_truncation.h | 387 +++--- src/stanExports_simulate_infections.h | 1096 ++++++++--------- src/stanExports_simulate_secondary.cc |only src/stanExports_simulate_secondary.h |only tests/testthat/test-epinow.R | 2 tests/testthat/test-stan-rt.R | 25 tests/testthat/test-stan-secondary.R |only 75 files changed, 2162 insertions(+), 1943 deletions(-)
Title: Helper Functions to Install and Maintain TeX Live, and Compile
LaTeX Documents
Description: Helper functions to install and maintain the 'LaTeX' distribution
named 'TinyTeX' (<https://yihui.org/tinytex/>), a lightweight, cross-platform,
portable, and easy-to-maintain version of 'TeX Live'. This package also
contains helper functions to compile 'LaTeX' documents, and install missing
'LaTeX' packages automatically.
Author: Yihui Xie [aut, cre, cph] (<https://orcid.org/0000-0003-0645-5666>),
RStudio, PBC [cph],
Fernando Cagua [ctb],
Ethan Heinzen [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between tinytex versions 0.27 dated 2020-11-01 and 0.28 dated 2020-12-14
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/latex.R | 9 ++++++--- README.md | 4 +++- man/latexmk.Rd | 3 +++ 5 files changed, 19 insertions(+), 11 deletions(-)
Title: Partition-Assisted Clustering and Multiple Alignments of
Networks
Description: Implements partition-assisted clustering and multiple alignments of networks. It 1) utilizes partition-assisted clustering to find robust and accurate clusters and 2) discovers coherent relationships of clusters across multiple samples. It is particularly useful for analyzing single-cell data set. Please see Li et al. (2017) <doi:10.1371/journal.pcbi.1005875> for detail method description.
Author: Ye Henry Li, Dangna Li
Maintainer: Ye Henry Li <hlowl2@gmail.com>
Diff between PAC versions 1.1.2 dated 2020-03-20 and 1.1.3 dated 2020-12-14
DESCRIPTION | 10 +++++----- MD5 | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-)
Title: Presentation Ninja
Description: Create HTML5 slides with R Markdown and the JavaScript library
'remark.js' (<https://remarkjs.com>).
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Alessandro Gasparini [ctb] (<https://orcid.org/0000-0002-8319-7624>),
Benjie Gillam [ctb],
Claus Thorn Ekstrøm [ctb],
Daniel Anderson [ctb],
Dawei Lang [ctb],
Emi Tanaka [ctb],
Garrick Aden-Buie [ctb] (<https://orcid.org/0000-0002-7111-0077>),
Iñaki Ucar [ctb] (<https://orcid.org/0000-0001-6403-5550>),
John Little [ctb],
Joselyn Chávez [ctb] (<https://orcid.org/0000-0002-4974-4591>),
Joseph Casillas [ctb],
Lucy D'Agostino McGowan [ctb] (<https://orcid.org/0000-0001-7297-9359>),
Malcolm Barrett [ctb] (<https://orcid.org/0000-0003-0299-5825>),
Matthew Mark Strasiotto [ctb] (mstr3336),
Michael Wayne Kearney [ctb],
Nan-Hung Hsieh [ctb],
Ole Petter Bang [ctb] (CSS in
rmarkdown/templates/xaringan/resources/default.css),
Patrick Schratz [ctb],
Paul Klemm [ctb] (<https://orcid.org/0000-0002-5985-1737>),
Paul Lemmens [ctb],
Sean Lopp [ctb],
Silvia Canelon [ctb] (<https://orcid.org/0000-0003-1709-1394>),
Susan VanderPlas [ctb] (<https://orcid.org/0000-0002-3803-0972>),
Waldir Leoncio [ctb],
Yongfu Liao [ctb],
Yue Jiang [ctb] (<https://orcid.org/0000-0002-9798-5517>)
Maintainer: Yihui Xie <xie@yihui.name>
Diff between xaringan versions 0.18 dated 2020-10-21 and 0.19 dated 2020-12-14
DESCRIPTION | 8 +- MD5 | 10 +- README.md | 6 + build/vignette.rds |binary inst/rmarkdown/templates/xaringan/resources/nhsr-fonts.css |only inst/rmarkdown/templates/xaringan/resources/nhsr.css |only inst/rmarkdown/templates/xaringan/resources/useR.css | 49 +++++++++---- 7 files changed, 51 insertions(+), 22 deletions(-)
Title: A Simple HTTP Server to Serve Static Files or Dynamic Documents
Description: Start an HTTP server in R to serve static files, or dynamic
documents that can be converted to HTML files (e.g., R Markdown) under a
given directory.
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Carson Sievert [ctb],
Jesse Anderson [ctb],
Ramnath Vaidyanathan [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between servr versions 0.20 dated 2020-10-19 and 0.21 dated 2020-12-14
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS | 8 ++++++++ R/static.R | 24 +++++++++++++++++------- README.md | 6 ++++-- man/httd.Rd | 5 +++++ man/server_config.Rd | 6 ++++++ 7 files changed, 49 insertions(+), 18 deletions(-)
Title: Estimate (Generalized) Linear Mixed Models with Factor
Structures
Description: Utilizes the 'lme4' and 'optimx' packages (previously the optim()
function from 'stats') to estimate (generalized) linear mixed models (GLMM)
with factor structures using a profile likelihood approach, as outlined in
Jeon and Rabe-Hesketh (2012) <doi:10.3102/1076998611417628> and
Rockwood and Jeon (2019) <doi:10.1080/00273171.2018.1516541>.
Factor analysis and item response models can be extended to allow
for an arbitrary number of nested and crossed random effects,
making it useful for multilevel and cross-classified models.
Author: Minjeong Jeon [aut],
Nicholas Rockwood [aut, cre]
Maintainer: Nicholas Rockwood <nrockwood@llu.edu>
Diff between PLmixed versions 0.1.4 dated 2019-08-19 and 0.1.5 dated 2020-12-14
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- R/PLmixed_main_function.R | 5 ++++- build/vignette.rds |binary inst/doc/PLmixed_intro.html | 19 +++++++++++++------ man/IRTsim.Rd | 6 ++++-- man/JUDGEsim.Rd | 6 ++++-- man/KYPSitemsim.Rd | 6 ++++-- man/KYPSsim.Rd | 6 ++++-- man/PLmixed.Rd | 32 +++++++++++++++++++++++++------- 10 files changed, 71 insertions(+), 35 deletions(-)
Title: Tools for 'iNZight'
Description: Provides a collection of wrapper functions for common variable and dataset manipulation workflows primarily used by 'iNZight', a graphical user interface providing easy exploration and visualisation of data for students of statistics, available in both desktop and online versions. Additionally, many of the functions return the 'tidyverse' code used to obtain the result in an effort to bridge the gap between GUI and coding.
Author: Tom Elliott [aut, cre] (<https://orcid.org/0000-0002-7815-6318>),
Christoph Knopf [ctb],
Akshay Gupta [ctb],
Owen Jin [ctb] (Tidyverse variable/data manipulation functions),
Lushi Cai [ctb],
Yiwen He [ctb] (Dates/times and dataset manipulation),
Daniel Barnett [ctb] (Data validation)
Maintainer: Tom Elliott <tom.elliott@auckland.ac.nz>
Diff between iNZightTools versions 1.9.0 dated 2020-07-29 and 1.10 dated 2020-12-14
DESCRIPTION | 14 +-- MD5 | 18 ++-- R/aggregate_data.R | 135 ++++++++++++++++++++++++++---------- R/import_data.R | 33 ++++++++ R/import_survey.R | 88 +++++++++++++++++++---- man/aggregateData.Rd | 44 ++++++++++- man/import_survey.Rd | 17 +++- tests/testthat/test_Extfromdt.R | 5 - tests/testthat/test_smart_read.R | 9 ++ tests/testthat/test_survey_design.R | 65 +++++++++++++---- 10 files changed, 337 insertions(+), 91 deletions(-)