Title: Data Supporting the 'VGAM' Package
Description: Mainly data sets to accompany the VGAM package and
the book "Vector Generalized Linear and
Additive Models: With an Implementation in R" (Yee, 2015)
<DOI:10.1007/978-1-4939-2818-7>.
These are used to illustrate vector generalized
linear and additive models (VGLMs/VGAMs), and associated models
(Reduced-Rank VGLMs, Quadratic RR-VGLMs, Row-Column
Interaction Models, and constrained and unconstrained ordination
models in ecology). This package now contains some
old VGAM family functions which have been replaced by newer
ones (often because they are now special cases).
Author: Thomas Yee [aut, cre, cph],
James Gray [dtc]
Maintainer: Thomas Yee <t.yee@auckland.ac.nz>
Diff between VGAMdata versions 1.1-4 dated 2020-10-20 and 1.1-5 dated 2021-01-12
DESCRIPTION | 8 MD5 | 31 +- NAMESPACE | 11 NEWS | 17 + R/family.fishing.R | 2 R/family.vd1.R | 607 +++++++++++++++++++++++++++++++++++++++++++++++- R/family.vd2.R |only data/airbnb.ac.R |only data/flamingo.R |only man/VGAMdata-package.Rd | 28 +- man/airbnb.ac.Rd |only man/bellUC.Rd |only man/bellff.Rd |only man/flamingo.Rd |only man/genpoisson.Rd |only man/notdocumentedyet.Rd | 2 man/posbinomUC.Rd | 4 man/posnegbinUC.Rd | 4 man/profs.nz.Rd | 279 +++++++++++----------- man/tikuv.Rd |only man/tikuvUC.Rd |only man/yip88.Rd |only 22 files changed, 821 insertions(+), 172 deletions(-)
Title: Judd, McClelland, & Ryan Formatting for ANOVA Output
Description: Produces ANOVA tables in the format used by Judd, McClelland, and Ryan
(2017, ISBN: 978-1138819832) in their introductory textbook, Data Analysis. This includes
proportional reduction in error and formatting to improve ease the transition between the book
and R.
Author: Adam Blake [aut] (<https://orcid.org/0000-0001-7881-8652>),
Jeff Chrabaszcz [aut],
Ji Son [aut] (<https://orcid.org/0000-0002-4258-4791>),
Jim Stigler [cre, aut] (<https://orcid.org/0000-0001-6107-7827>)
Maintainer: Jim Stigler <jstigler@gmail.com>
Diff between supernova versions 2.2.3 dated 2020-11-04 and 2.3.0 dated 2021-01-12
DESCRIPTION | 27 - MD5 | 29 - NAMESPACE | 5 NEWS.md | 123 +++--- R/equation.R |only R/generate_models.R | 31 - R/supernova.R | 2 R/utils-formula.R |only R/utils.R | 239 ++++++------ R/variables.R | 135 ++++-- man/equation.Rd |only man/formula_building.Rd |only man/formula_expansion.Rd |only man/formula_extraction.Rd |only man/variables.Rd | 21 - tests/testthat/test-equation.R |only tests/testthat/test-generate_models.R | 642 ++++++++++++++++----------------- tests/testthat/test-value_extraction.r | 60 +-- tests/testthat/test-variables.R | 204 +++++++--- 19 files changed, 831 insertions(+), 687 deletions(-)
Title: Example Datasets from Archaeological Research
Description: The archdata package provides several types of data that are typically used in archaeological research. It provides all of the data sets used in "Quantitative Methods in Archaeology Using R" by David L Carlson, one of the Cambridge Manuals in Archaeology.
Author: David L. Carlson [aut, cre],
Georg Roth [ctb]
Maintainer: David L. Carlson <dcarlson@tamu.edu>
Diff between archdata versions 1.2 dated 2018-02-19 and 1.2-1 dated 2021-01-12
DESCRIPTION | 16 +-- MD5 | 62 +++++++-------- NAMESPACE | 2 NEWS | 31 ++++--- man/Acheulean.Rd | 106 ++++++++++++------------- man/Arnhofen.Rd | 176 +++++++++++++++++++++---------------------- man/BACups.Rd | 72 ++++++++--------- man/BarmoseI.grid.Rd | 76 +++++++++--------- man/BarmoseI.pp.Rd | 76 +++++++++--------- man/Bornholm.Rd | 158 +++++++++++++++++++------------------- man/DartPoints.Rd | 106 ++++++++++++------------- man/EIAGraves.Rd | 106 ++++++++++++------------- man/ESASites.Rd | 102 ++++++++++++------------ man/EWBurials.Rd | 89 +++++++++++---------- man/EndScrapers.Rd | 80 +++++++++---------- man/EngrBone.Rd | 90 +++++++++++----------- man/Fibulae.Rd | 120 ++++++++++++++--------------- man/Handaxes.Rd | 94 +++++++++++------------ man/MaskSite.Rd | 82 ++++++++++---------- man/Mesolithic.Rd | 74 +++++++++--------- man/Michelsberg.Rd | 196 ++++++++++++++++++++++++------------------------ man/Nelson.Rd | 94 ++++++++++++----------- man/Olorgesailie.maj.Rd | 84 ++++++++++---------- man/Olorgesailie.sub.Rd | 110 +++++++++++++------------- man/OxfordPots.Rd | 94 +++++++++++------------ man/PitHouses.Rd | 88 ++++++++++----------- man/RBGlass1.Rd | 102 ++++++++++++------------ man/RBGlass2.Rd | 98 ++++++++++++------------ man/RBPottery.Rd | 92 +++++++++++----------- man/Snodgrass.Rd | 96 +++++++++++------------ man/TRBPottery.Rd | 104 ++++++++++++------------- man/archdata-package.Rd | 116 ++++++++++++++-------------- 32 files changed, 1503 insertions(+), 1489 deletions(-)
Title: Safety Diagnostics for Dose-Escalation Trial Designs
Description: Enhances various R packages that support the design and simulation
of phase 1 dose-escalation trials, adding diagnostics to examine
the safety characteristics of these designs in light of expected
inter-individual variation in pharmacokinetics and pharmacodynamics.
See Norris (2020b), "Retrospective analysis of a fatal dose-finding
trial" <arXiv:2004.12755> and (2020c) "What Were They Thinking?
Pharmacologic priors implicit in a choice of 3+3 dose-escalation design"
<arXiv:2012.05301>.
Author: David C. Norris [aut, cre, cph]
(<https://orcid.org/0000-0001-9593-6343>),
Markus Triska [ctb]
Maintainer: David C. Norris <david@precisionmethods.guru>
Diff between precautionary versions 0.2-0 dated 2020-12-15 and 0.2-1 dated 2021-01-12
DESCRIPTION | 18 +++--- LICENSE | 2 MD5 | 37 +++++++----- NEWS.md | 7 ++ R/data.R |only R/enhance.R | 2 R/precautionary-package.R | 40 +++++++------- R/simulate_trials.R | 1 build/partial.rdb |binary build/vignette.rds |binary data |only exec/esc.pl | 19 +++++- inst/WORDLIST | 16 +++++ inst/doc/FDA-proactive.html | 42 -------------- inst/doc/Intro.html | 40 -------------- inst/doc/Safety-Schematic-via-DTP.R |only inst/doc/Safety-Schematic-via-DTP.Rmd |only inst/doc/Safety-Schematic-via-DTP.html |only man/phase1_sim.Rd | 2 man/simulate_trials.Rd | 1 man/viola_dtp.Rd |only vignettes/Safety-Schematic-via-DTP.Rmd |only vignettes/precautionary-package.bib | 94 +++++++++++++++++++++++++++++++-- 23 files changed, 189 insertions(+), 132 deletions(-)
Title: A C++11 Interface for R's C Interface
Description: Provides a header only, C++11 interface to R's C
interface. Compared to other approaches 'cpp11' strives to be safe
against long jumps from the C API as well as C++ exceptions, conform
to normal R function semantics and supports interaction with 'ALTREP'
vectors.
Author: Jim Hester [aut, cre] (<https://orcid.org/0000-0002-2739-7082>),
Romain François [ctb],
Benjamin Kietzman [ctb],
RStudio [cph, fnd]
Maintainer: Jim Hester <jim.hester@rstudio.com>
Diff between cpp11 versions 0.2.4 dated 2020-11-05 and 0.2.5 dated 2021-01-12
DESCRIPTION | 6 MD5 | 48 +- NEWS.md | 14 R/knitr.R | 3 R/register.R | 13 R/source.R | 63 ++- inst/doc/converting.Rmd | 6 inst/doc/converting.html | 16 inst/doc/cpp11.R | 344 ++++++++++---------- inst/doc/cpp11.html | 614 +++++++++++++++++++----------------- inst/doc/internals.html | 10 inst/doc/motivations.R | 108 +++--- inst/doc/motivations.html | 371 +++++++++++++++++++++ inst/include/cpp11/declarations.hpp | 2 inst/include/cpp11/integers.hpp | 2 inst/include/cpp11/list_of.hpp | 36 +- inst/include/cpp11/named_arg.hpp | 13 inst/include/cpp11/protect.hpp | 8 inst/include/cpp11/r_bool.hpp | 10 inst/include/cpp11/r_string.hpp | 3 inst/include/cpp11/r_vector.hpp | 2 man/cpp_source.Rd | 33 + tests/testthat/test-register.R | 4 tests/testthat/test-source.R | 55 +++ vignettes/converting.Rmd | 6 25 files changed, 1177 insertions(+), 613 deletions(-)
Title: Nested and Crossed Block Designs for Factorial and Unstructured
Treatment Sets
Description: Constructs treatment and block designs for linear treatment models
with crossed or nested block factors. The treatment design can be any feasible
linear model and the block design can be any feasible combination of crossed or
nested block factors. The block design is a sum of one or more block factors
and the block design is optimized sequentially with the levels of each successive
block factor optimized conditional on all previously optimized block factors.
D-optimality is used throughout except for square or rectangular lattice block designs
which are constructed algebraically using mutually orthogonal Latin squares.
Crossed block designs with interaction effects are optimized using a weighting scheme
which allows for differential weighting of first and second-order block effects.
Outputs include a table showing the allocation of treatments to blocks and tables showing
the achieved D-efficiency factors for each block and treatment design.
Edmondson, R.N. Multi-level Block Designs for Comparative Experiments.
JABES 25, 500–522 (2020). <doi:10.1007/s13253-020-00416-0>.
Author: R. N. Edmondson.
Maintainer: Rodney Edmondson <rodney.edmondson@gmail.com>
Diff between blocksdesign versions 4.6 dated 2020-11-14 and 4.7 dated 2021-01-12
blocksdesign-4.6/blocksdesign/R/buildblocks.R |only blocksdesign-4.6/blocksdesign/R/orthogM.R |only blocksdesign-4.6/blocksdesign/man/buildblocks.Rd |only blocksdesign-4.7/blocksdesign/DESCRIPTION | 22 blocksdesign-4.7/blocksdesign/MD5 | 23 blocksdesign-4.7/blocksdesign/NAMESPACE | 1 blocksdesign-4.7/blocksdesign/R/blocks.R | 300 +-- blocksdesign-4.7/blocksdesign/R/blocksdesign-package.R | 119 - blocksdesign-4.7/blocksdesign/R/design.R | 1381 +++++++------- blocksdesign-4.7/blocksdesign/R/nestedBlocks.R |only blocksdesign-4.7/blocksdesign/inst/doc/blocksdesign.pdf |binary blocksdesign-4.7/blocksdesign/man/blocks.Rd | 51 blocksdesign-4.7/blocksdesign/man/blocksdesign-package.Rd | 3 blocksdesign-4.7/blocksdesign/man/design.Rd | 227 +- blocksdesign-4.7/blocksdesign/man/nestedBlocks.Rd |only 15 files changed, 1116 insertions(+), 1011 deletions(-)
Title: Supplemental U.S. 2000 Census Tract Boundaries for 13 Western
States without Seer Registries for 'SeerMapper'
Description: Provides supplemental 2000 census tract boundaries for the 13 states
without Seer Registries that are west of the Mississippi river
for use with the 'SeerMapper' package.
The data contained in this
package is derived from U.S. 2000 Census data and is in the public domain.
Updated to Alber Equal Area projection.
Author: Jim Pearson <jbpearson353@gmail.com> with data provided by U.S. Census Bureau
Maintainer: Joe Zou <zouj@imsweb.com>
Diff between SeerMapperWest versions 1.2.4 dated 2020-06-23 and 1.2.5 dated 2021-01-12
DESCRIPTION | 8 ++++---- MD5 | 30 +++++++++++++++--------------- data/tr05_d00.rda |binary data/tr08_d00.rda |binary data/tr20_d00.rda |binary data/tr27_d00.rda |binary data/tr29_d00.rda |binary data/tr30_d00.rda |binary data/tr31_d00.rda |binary data/tr32_d00.rda |binary data/tr38_d00.rda |binary data/tr41_d00.rda |binary data/tr46_d00.rda |binary data/tr48_d00.rda |binary data/tr56_d00.rda |binary inst/NEWS | 5 ++++- 16 files changed, 23 insertions(+), 20 deletions(-)
More information about SeerMapperWest at CRAN
Permanent link
Title: Supplemental U.S. 2000 Census Tract Boundaries for 19 States
with Seer Registries for 'SeerMapper'
Description: Provides supplemental 2000 census tract boundaries for the 19 states
containing Seer Registries for use with the 'SeerMapper' package.
The data contained in this
package is derived from U.S. Census data and is in the public domain.
Author: Jim Pearson <jbpearson353@gmail.com> with data provided by U.S. Census Bureau
Maintainer: Joe Zou <zouj@imsweb.com>
Diff between SeerMapperRegs versions 1.2.4 dated 2020-06-23 and 1.2.5 dated 2021-01-12
DESCRIPTION | 8 ++++---- MD5 | 42 +++++++++++++++++++++--------------------- data/tr02_d00.rda |binary data/tr04_d00.rda |binary data/tr06_d00.rda |binary data/tr09_d00.rda |binary data/tr13_d00.rda |binary data/tr15_d00.rda |binary data/tr16_d00.rda |binary data/tr19_d00.rda |binary data/tr21_d00.rda |binary data/tr22_d00.rda |binary data/tr25_d00.rda |binary data/tr26_d00.rda |binary data/tr34_d00.rda |binary data/tr35_d00.rda |binary data/tr36_d00.rda |binary data/tr40_d00.rda |binary data/tr49_d00.rda |binary data/tr53_d00.rda |binary data/tr55_d00.rda |binary inst/NEWS | 5 ++++- 22 files changed, 29 insertions(+), 26 deletions(-)
More information about SeerMapperRegs at CRAN
Permanent link
Title: Supplemental U.S. 2000 Census Tract Boundaries for 20 States,
District and Territory without Seer Registries that are East of
the Mississippi River for Use with 'SeerMapper' Package
Description: Provides supplemental 2000 census tract boundaries for the 20 states, district and territory
without Seer Registries that are east of the Mississippi river
for use with the 'SeerMapper' package.
The data contained in this
package is derived from U.S. Census data and is in the public domain.
Author: Jim Pearson <jbpearson353@gmail.com> with data provided by U.S. Census Bureau
Maintainer: Joe Zou <zouj@imsweb.com>
Diff between SeerMapperEast versions 1.2.4 dated 2020-06-23 and 1.2.5 dated 2021-01-12
DESCRIPTION | 8 ++++---- MD5 | 44 ++++++++++++++++++++++---------------------- data/tr01_d00.rda |binary data/tr10_d00.rda |binary data/tr11_d00.rda |binary data/tr12_d00.rda |binary data/tr17_d00.rda |binary data/tr18_d00.rda |binary data/tr23_d00.rda |binary data/tr24_d00.rda |binary data/tr28_d00.rda |binary data/tr33_d00.rda |binary data/tr37_d00.rda |binary data/tr39_d00.rda |binary data/tr42_d00.rda |binary data/tr44_d00.rda |binary data/tr45_d00.rda |binary data/tr47_d00.rda |binary data/tr50_d00.rda |binary data/tr51_d00.rda |binary data/tr54_d00.rda |binary data/tr72_d00.rda |binary inst/NEWS | 5 ++++- 23 files changed, 30 insertions(+), 27 deletions(-)
More information about SeerMapperEast at CRAN
Permanent link
Title: Supplemental U.S. 2010 Census Tract Boundaries for 13 Western
States without Seer Registries for 'SeerMapper'
Description: Provides supplemental 2010 census tract boundaries for the 13 states
without Seer Registries that are west of the Mississippi river
for use with the 'SeerMapper' package.
The data contained in this
package is derived from U.S. 2010 Census data and is in public domain.
Author: Jim Pearson <jbpearson353@gmail.com> with data provided by U.S. Census Bureau
Maintainer: Joe Zou <zouj@imsweb.com>
Diff between SeerMapper2010West versions 1.2.4 dated 2020-06-23 and 1.2.5 dated 2021-01-12
DESCRIPTION | 8 ++++---- MD5 | 30 +++++++++++++++--------------- data/tr05_d10.rda |binary data/tr08_d10.rda |binary data/tr20_d10.rda |binary data/tr27_d10.rda |binary data/tr29_d10.rda |binary data/tr30_d10.rda |binary data/tr31_d10.rda |binary data/tr32_d10.rda |binary data/tr38_d10.rda |binary data/tr41_d10.rda |binary data/tr46_d10.rda |binary data/tr48_d10.rda |binary data/tr56_d10.rda |binary inst/NEWS | 9 ++++++--- 16 files changed, 25 insertions(+), 22 deletions(-)
More information about SeerMapper2010West at CRAN
Permanent link
Title: Supplemental U.S. 2010 Census Tract Boundaries for 19 States
with Seer Registries for 'SeerMapper'
Description: Provides supplemental 2010 census tract boundaries of the 19 states
containing Seer Registries for use with the 'SeerMapper' package.
The data contained in this
package is derived from U.S. 2010 Census data and is in public domain.
Author: Jim Pearson <jbpearson353@gmail.com> with data provided by U.S. Census Bureau
Maintainer: Joe Zou <zouj@imsweb.com>
Diff between SeerMapper2010Regs versions 1.2.4 dated 2020-06-23 and 1.2.5 dated 2021-01-12
DESCRIPTION | 8 ++++---- MD5 | 42 +++++++++++++++++++++--------------------- data/tr02_d10.rda |binary data/tr04_d10.rda |binary data/tr06_d10.rda |binary data/tr09_d10.rda |binary data/tr13_d10.rda |binary data/tr15_d10.rda |binary data/tr16_d10.rda |binary data/tr19_d10.rda |binary data/tr21_d10.rda |binary data/tr22_d10.rda |binary data/tr25_d10.rda |binary data/tr26_d10.rda |binary data/tr34_d10.rda |binary data/tr35_d10.rda |binary data/tr36_d10.rda |binary data/tr40_d10.rda |binary data/tr49_d10.rda |binary data/tr53_d10.rda |binary data/tr55_d10.rda |binary inst/NEWS | 5 ++++- 22 files changed, 29 insertions(+), 26 deletions(-)
More information about SeerMapper2010Regs at CRAN
Permanent link
Title: Supplemental U.S. 2010 Census Tract Boundaries for 20 Eastern
States (including DC and PR) without Registries for
'SeerMapper'
Description: Provides supplemental 2010 census tract boundary package for 20 states
without Seer Registries that are east of the Mississippi river
for use with the 'SeerMapper' package.
The data contained in this
package is derived from U.S. Census data and is in public domain.
Author: Jim Pearson <jbpearson353@gmail.com> with data provided by U.S. Census Bureau
Maintainer: Joe Zou <zouj@imsweb.com>
Diff between SeerMapper2010East versions 1.2.4 dated 2020-06-23 and 1.2.5 dated 2021-01-12
DESCRIPTION | 8 ++++---- MD5 | 44 ++++++++++++++++++++++---------------------- data/tr01_d10.rda |binary data/tr10_d10.rda |binary data/tr11_d10.rda |binary data/tr12_d10.rda |binary data/tr17_d10.rda |binary data/tr18_d10.rda |binary data/tr23_d10.rda |binary data/tr24_d10.rda |binary data/tr28_d10.rda |binary data/tr33_d10.rda |binary data/tr37_d10.rda |binary data/tr39_d10.rda |binary data/tr42_d10.rda |binary data/tr44_d10.rda |binary data/tr45_d10.rda |binary data/tr47_d10.rda |binary data/tr50_d10.rda |binary data/tr51_d10.rda |binary data/tr54_d10.rda |binary data/tr72_d10.rda |binary inst/NEWS | 9 ++++++--- 23 files changed, 32 insertions(+), 29 deletions(-)
More information about SeerMapper2010East at CRAN
Permanent link
Title: A Quick Way to Map U.S. Rates and Data of U.S. States, Counties,
Census Tracts, or Seer Registries using 2000 and 2010 U.S.
Census Boundaries
Description: Provides an easy way to map seer registry area rate data on a U.S. map.
The U.S. data may be mapped at the state or state/county.
U.S. Seer registry data may be mapped at the Seer registry area, Seer Registry
area/county or Seer Registry area/county/census tract level. The function uses
a calculated default categorization breakpoint list for 5 categories,
when not breakpoint list is provided or the number of categories is specified
by the user. A user provided break point list is limited to containing 5 values.
The number of calculated categories may be from 3 to 11. The user provide the p-value
for each area and request hatching over any areas with a p-value > 0.05.
Other types of comparisons can be specified. If states or
state/counties are used, the area identifier is the U.S. FIPS codes for states and
counties, 2 digits and 5 digits respectfully. If the data is for U.S. Seer Registry
areas, the Seer Registry area identifier used to link the data to the geographical
area is a Seer Registry area abbreviation. See documentation for the list of
acceptable Seer Registry area names and abbreviations. The state boundaries are
overlaid all rate maps. The package contains the boundary data for state, county,
Seer Registry areas, and census tracts for counties within a Seer registry area.
The package support boundary data from the 2000 and 2010 U.S. Census.
The SeerMapper package version contains the U.S. Census 2000 and 2010 boundary data
for the regional, state, Seer Registry, and county levels. Six supplement packages
contain the census tract boundary data.
Copyrighted 2014, 2015, 2016, 2017, 2018 and 2019 by Pearson and Pickle.
Author: Jim Pearson <jbpearson353@gmail.com>
Maintainer: Joe Zou <zouj@imsweb.com>
Diff between SeerMapper versions 1.2.4 dated 2020-06-23 and 1.2.5 dated 2021-01-12
DESCRIPTION | 8 - MD5 | 228 +++++++++++++++++++++++++++--------------------------- data/co01_d00.rda |binary data/co02_d00.rda |binary data/co02_d10.rda |binary data/co04_d00.rda |binary data/co05_d00.rda |binary data/co06_d00.rda |binary data/co08_d00.rda |binary data/co08_d10.rda |binary data/co09_d00.rda |binary data/co10_d00.rda |binary data/co11_d00.rda |binary data/co12_d00.rda |binary data/co13_d00.rda |binary data/co15_d00.rda |binary data/co16_d00.rda |binary data/co17_d00.rda |binary data/co18_d00.rda |binary data/co19_d00.rda |binary data/co20_d00.rda |binary data/co21_d00.rda |binary data/co22_d00.rda |binary data/co23_d00.rda |binary data/co24_d00.rda |binary data/co25_d00.rda |binary data/co26_d00.rda |binary data/co27_d00.rda |binary data/co28_d00.rda |binary data/co29_d00.rda |binary data/co30_d00.rda |binary data/co31_d00.rda |binary data/co32_d00.rda |binary data/co33_d00.rda |binary data/co34_d00.rda |binary data/co35_d00.rda |binary data/co36_d00.rda |binary data/co37_d00.rda |binary data/co38_d00.rda |binary data/co39_d00.rda |binary data/co40_d00.rda |binary data/co41_d00.rda |binary data/co42_d00.rda |binary data/co44_d00.rda |binary data/co45_d00.rda |binary data/co46_d00.rda |binary data/co47_d00.rda |binary data/co48_d00.rda |binary data/co49_d00.rda |binary data/co50_d00.rda |binary data/co51_d00.rda |binary data/co51_d10.rda |binary data/co53_d00.rda |binary data/co54_d00.rda |binary data/co55_d00.rda |binary data/co56_d00.rda |binary data/co72_d00.rda |binary data/hs01_d00.rda |binary data/hs02_d00.rda |binary data/hs02_d10.rda |binary data/hs04_d00.rda |binary data/hs05_d00.rda |binary data/hs06_d00.rda |binary data/hs08_d00.rda |binary data/hs08_d10.rda |binary data/hs09_d00.rda |binary data/hs10_d00.rda |binary data/hs11_d00.rda |binary data/hs12_d00.rda |binary data/hs13_d00.rda |binary data/hs15_d00.rda |binary data/hs16_d00.rda |binary data/hs17_d00.rda |binary data/hs18_d00.rda |binary data/hs19_d00.rda |binary data/hs20_d00.rda |binary data/hs21_d00.rda |binary data/hs22_d00.rda |binary data/hs23_d00.rda |binary data/hs24_d00.rda |binary data/hs25_d00.rda |binary data/hs26_d00.rda |binary data/hs27_d00.rda |binary data/hs28_d00.rda |binary data/hs29_d00.rda |binary data/hs30_d00.rda |binary data/hs31_d00.rda |binary data/hs32_d00.rda |binary data/hs33_d00.rda |binary data/hs34_d00.rda |binary data/hs35_d00.rda |binary data/hs36_d00.rda |binary data/hs37_d00.rda |binary data/hs38_d00.rda |binary data/hs39_d00.rda |binary data/hs40_d00.rda |binary data/hs41_d00.rda |binary data/hs42_d00.rda |binary data/hs44_d00.rda |binary data/hs45_d00.rda |binary data/hs46_d00.rda |binary data/hs47_d00.rda |binary data/hs48_d00.rda |binary data/hs49_d00.rda |binary data/hs50_d00.rda |binary data/hs51_d00.rda |binary data/hs51_d10.rda |binary data/hs53_d00.rda |binary data/hs54_d00.rda |binary data/hs55_d00.rda |binary data/hs56_d00.rda |binary data/rg99_d00.rda |binary data/sa99_d00.rda |binary data/st99_d00.rda |binary inst/doc/NEWS | 5 - 115 files changed, 122 insertions(+), 119 deletions(-)
Title: 'WebDriver' Client for 'PhantomJS'
Description: A client for the 'WebDriver' 'API'. It allows driving a
(probably headless) web browser, and can be used to test web
applications, including 'Shiny' apps. In theory it works with any
'WebDriver' implementation, but it was only tested with 'PhantomJS'.
Author: Ariya Hidayat, Gábor Csárdi, Gabor Torok, Ivan De Marino, Robert Gieseke,
Steven Masala, Winston Chang, Zack Weinberg
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between webdriver versions 1.0.5 dated 2018-04-10 and 1.0.6 dated 2021-01-12
webdriver-1.0.5/webdriver/inst/README.Rmd |only webdriver-1.0.5/webdriver/inst/README.markdown |only webdriver-1.0.5/webdriver/inst/screenshot-1-1.png |only webdriver-1.0.5/webdriver/inst/screenshot-2-1.png |only webdriver-1.0.6/webdriver/DESCRIPTION | 8 - webdriver-1.0.6/webdriver/MD5 | 15 +-- webdriver-1.0.6/webdriver/NEWS.md | 6 + webdriver-1.0.6/webdriver/R/element-keys.R | 102 +++++++++++----------- webdriver-1.0.6/webdriver/R/errors.R | 49 +++++++--- webdriver-1.0.6/webdriver/R/run-phantomjs.R | 55 ++++++++++- webdriver-1.0.6/webdriver/README.md |only 11 files changed, 148 insertions(+), 87 deletions(-)
Title: Display Resizable Plots
Description: Display a plot in a Tk canvas.
Author: Filipe Campelo
Maintainer: Filipe Campelo <fcampelo@ci.uc.pt>
Diff between tkRplotR versions 0.1.3 dated 2020-06-20 and 0.1.4 dated 2021-01-12
DESCRIPTION | 8 +- MD5 | 10 +- NAMESPACE | 5 + R/functions.R | 190 ++++++++++++++++++++++++++++++++++++++++++++--------- R/zzz.R | 141 +++++++++++++++++++-------------------- man/setVariable.Rd | 11 +-- 6 files changed, 249 insertions(+), 116 deletions(-)
Title: Credible Visualization for Two-Dimensional Projections of Data
Description: Projections are common dimensionality reduction methods, which represent high-dimensional data in a two-dimensional space. However, when restricting the output space to two dimensions, which results in a two dimensional scatter plot (projection) of the data, low dimensional similarities do not represent high dimensional distances coercively [Thrun, 2018] <DOI: 10.1007/978-3-658-20540-9>. This could lead to a misleading interpretation of the underlying structures [Thrun, 2018]. By means of the 3D topographic map the generalized Umatrix is able to depict errors of these two-dimensional scatter plots. The package is derived from the book of Thrun, M.C.: "Projection Based Clustering through Self-Organization and Swarm Intelligence" (2018) <DOI:10.1007/978-3-658-20540-9> and the main algorithm called simplified self-organizing map for dimensionality reduction methods is published in <DOI: 10.1016/j.mex.2020.101093>.
Author: Michael Thrun [aut, cre, cph] (<https://orcid.org/0000-0001-9542-5543>),
Felix Pape [ctb, ctr],
Tim Schreier [ctb, ctr],
Luis Winckelman [ctb, ctr],
Alfred Ultsch [ths]
Maintainer: Michael Thrun <m.thrun@gmx.net>
Diff between GeneralizedUmatrix versions 1.2.1 dated 2020-10-25 and 1.2.2 dated 2021-01-12
DESCRIPTION | 10 MD5 | 37 +- R/GeneralizedUmatrix.R | 687 +++++++++++++++++++------------------- R/TopviewTopographicMap.R | 10 R/XYcoords2LinesColumns.R | 11 README.md |only build/partial.rdb |binary inst/CITATION | 31 - inst/doc/GeneralizedUmatrix.R | 27 + inst/doc/GeneralizedUmatrix.Rmd | 31 + inst/doc/GeneralizedUmatrix.html | 73 +++- man/Delta3DWeightsC.Rd | 2 man/GeneralizedUmatrix-package.Rd | 2 man/GeneralizedUmatrix.Rd | 5 man/NormalizeUmatrix.Rd | 17 man/TopviewTopographicMap.Rd | 4 man/XYcoords2LinesColumns.Rd | 2 man/plotTopographicMap.Rd | 4 man/trainstepC.Rd | 2 vignettes/GeneralizedUmatrix.Rmd | 31 + 20 files changed, 574 insertions(+), 412 deletions(-)
More information about GeneralizedUmatrix at CRAN
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Title: Swarm Intelligence for Self-Organized Clustering
Description: Algorithms implementing populations of agents that interact with one another and sense their environment may exhibit emergent behavior such as self-organization and swarm intelligence. Here, a swarm system called Databionic swarm (DBS) is introduced which was published in Thrun, M.C., Ultsch A.: "Swarm Intelligence for Self-Organized Clustering" (2020), Artificial Intelligence, <DOI:10.1016/j.artint.2020.103237>. DBS is able to adapt itself to structures of high-dimensional data such as natural clusters characterized by distance and/or density based structures in the data space. The first module is the parameter-free projection method called Pswarm (Pswarm()), which exploits the concepts of self-organization and emergence, game theory, swarm intelligence and symmetry considerations. The second module is the parameter-free high-dimensional data visualization technique, which generates projected points on the topographic map with hypsometric tints defined by the generalized U-matrix (GeneratePswarmVisualization()). The third module is the clustering method itself with non-critical parameters (DBSclustering()). Clustering can be verified by the visualization and vice versa. The term DBS refers to the method as a whole. It enables even a non-professional in the field of data mining to apply its algorithms for visualization and/or clustering to data sets with completely different structures drawn from diverse research fields. The comparison to common projection methods can be found in the book of Thrun, M.C.: "Projection Based Clustering through Self-Organization and Swarm Intelligence" (2018) <DOI:10.1007/978-3-658-20540-9>. A comparison to 26 common clustering algorithms on 15 datasets is presented on the website.
Author: Michael Thrun [aut, cre, cph] (<https://orcid.org/0000-0001-9542-5543>)
Maintainer: Michael Thrun <m.thrun@gmx.net>
Diff between DatabionicSwarm versions 1.1.3 dated 2020-02-03 and 1.1.5 dated 2021-01-12
DESCRIPTION | 16 - MD5 | 78 ++++----- NAMESPACE | 6 R/DBSclustering.R | 38 +++- R/GeneratePswarmVisualization.R | 21 +- R/Pswarm.R | 51 +++-- R/RobustNormalization.R | 226 ++++++++++++++------------ R/ShortestGraphPathsC.R | 4 R/checkInputDistancesOrData.R | 21 +- R/sESOM4BMUs.R | 222 ++++++++++++------------- R/setGridSize.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 2 inst/doc/DatabionicSwarm.R | 32 ++- inst/doc/DatabionicSwarm.Rmd | 72 +++++--- inst/doc/DatabionicSwarm.html | 268 +++++++++++++++++++------------ man/DBSclustering.Rd | 78 ++++----- man/DatabionicSwarm-package.Rd | 51 +++-- man/Delaunay4Points.Rd | 2 man/Delta3DWeightsC.Rd | 2 man/DijkstraSSSP.Rd | 2 man/GeneratePswarmVisualization.Rd | 70 +++----- man/Hepta.Rd | 4 man/Lsun3D.Rd | 4 man/ProjectedPoints2Grid.Rd | 2 man/Pswarm.Rd | 19 +- man/PswarmCurrentRadiusC2botsPositive.Rd | 2 man/RobustNormalization.Rd | 18 +- man/ShortestGraphPathsC.Rd | 2 man/findPossiblePositionsCsingle.Rd | 2 man/getCartesianCoordinates.Rd | 2 man/rDistanceToroidCsingle.Rd | 2 man/sESOM4BMUs.Rd | 2 man/setGridSize.Rd | 2 man/setPolarGrid.Rd | 2 man/setRmin.Rd | 2 man/trainstepC.Rd | 2 src/trainstepC.cpp | 10 - vignettes/DatabionicSwarm.Rmd | 72 +++++--- 40 files changed, 810 insertions(+), 603 deletions(-)
More information about DatabionicSwarm at CRAN
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Title: Global Triangular and Penta-Hexagonal Grids Based on Tessellated
Icosahedra
Description: Employs triangular tessellation to refine icosahedra
defined in 3d space. The procedures can be set to provide a grid with a
custom resolution. Both the primary triangular and their inverted penta-
hexagonal grids are available for implementation. Additional functions
are provided to position points (latitude-longitude data) on the grids,
to allow 2D and 3D plotting, use raster data and shapefiles.
Author: Adam T. Kocsis [aut, cre]
Maintainer: Adam T. Kocsis <adam.t.kocsis@gmail.com>
Diff between icosa versions 0.10.0 dated 2020-02-17 and 0.10.1 dated 2021-01-12
DESCRIPTION | 10 MD5 | 60 ++--- R/data-facelayer-basic.R | 2 R/grid-build.R | 2 R/grid-move.R | 4 R/grid-sp-polygons.R | 6 R/grid-subset.R | 4 R/plot-2d-grid.R | 1 R/plot-rgl-facelayer.R | 22 + R/plot-rgl-grid.R | 438 +++++++++++++++++++++++---------------- R/plot-rgl-sp3d.R | 7 R/plot-rgl-util.R | 8 build/vignette.rds |binary inst/NEWS.md | 6 inst/doc/icosa.R | 518 +++++++++++++++++++++++------------------------ inst/doc/icosa.Rmd | 13 - inst/doc/icosa.pdf |binary man/facelayer-class.Rd | 2 man/faces3d.Rd | 2 man/gridlabs3d.Rd | 4 man/guides3d.Rd | 8 man/lines3d.Rd | 6 man/plot.Rd | 4 man/plot3d.Rd | 8 man/resample.Rd | 4 man/rotate.Rd | 4 man/subset.Rd | 8 man/tessguide.Rd | 6 man/translate.Rd | 4 man/values.Rd | 6 vignettes/icosa.Rmd | 13 - 31 files changed, 645 insertions(+), 535 deletions(-)
Title: Generalized Spherical Distributions
Description: Define and compute with generalized spherical distributions - multivariate probability
laws that are specified by a star shaped contour (directional behavior) and a radial component.
The methods are described in Nolan (2016) <doi:10.1186/s40488-016-0053-0>.
Author: John P Nolan
Maintainer: John P Nolan <jpnolan@american.edu>
Diff between gensphere versions 1.1 dated 2017-09-16 and 1.3 dated 2021-01-12
gensphere-1.1/gensphere/man/figures/star.png |only gensphere-1.3/gensphere/DESCRIPTION | 13 ++++--- gensphere-1.3/gensphere/MD5 | 13 ++++--- gensphere-1.3/gensphere/R/gensphere.R | 18 ++++------ gensphere-1.3/gensphere/build |only gensphere-1.3/gensphere/man/cfunc.new.Rd | 40 ++++++++++------------- gensphere-1.3/gensphere/man/figures/ballbump.png |only gensphere-1.3/gensphere/man/gensphere-package.Rd | 20 +++++++---- gensphere-1.3/gensphere/man/gensphere.Rd | 15 ++++---- 9 files changed, 61 insertions(+), 58 deletions(-)
Title: Visualizations of High-Dimensional Data
Description: Gives access to data visualisation methods that are relevant from the data scientist's point of view. The flagship idea of 'DataVisualizations' is the mirrored density plot (MD-plot) for either classified or non-classified multivariate data published in Thrun, M.C. et al.: "Analyzing the Fine Structure of Distributions" (2020), PLoS ONE, <DOI:10.1371/journal.pone.0238835>. The MD-plot outperforms the box-and-whisker diagram (box plot), violin plot and bean plot and geom_violin plot of ggplot2. Furthermore, a collection of various visualization methods for univariate data is provided. In the case of exploratory data analysis, 'DataVisualizations' makes it possible to inspect the distribution of each feature of a dataset visually through a combination of four methods. One of these methods is the Pareto density estimation (PDE) of the probability density function (pdf). Additionally, visualizations of the distribution of distances using PDE, the scatter-density plot using PDE for two variables as well as the Shepard density plot and the Bland-Altman plot are presented here. Pertaining to classified high-dimensional data, a number of visualizations are described, such as f.ex. the heat map and silhouette plot. A political map of the world or Germany can be visualized with the additional information defined by a classification of countries or regions. By extending the political map further, an uncomplicated function for a Choropleth map can be used which is useful for measurements across a geographic area. For categorical features, the Pie charts, slope charts and fan plots, improved by the ABC analysis, become usable. More detailed explanations are found in the book by Thrun, M.C.: "Projection-Based Clustering through Self-Organization and Swarm Intelligence" (2018) <DOI:10.1007/978-3-658-20540-9>.
Author: Michael Thrun [aut, cre, cph] (<https://orcid.org/0000-0001-9542-5543>),
Felix Pape [aut, rev],
Onno Hansen-Goos [ctr, ctb],
Hamza Tayyab [ctr, ctb],
Dirk Eddelbuettel [ctr],
Craig Varrichio [ctr],
Alfred Ultsch [dtc, ctb, ctr]
Maintainer: Michael Thrun <m.thrun@gmx.net>
Diff between DataVisualizations versions 1.2.1 dated 2020-10-28 and 1.2.2 dated 2021-01-12
DESCRIPTION | 18 - MD5 | 57 ++-- R/ABCbarplot.R | 9 R/Choroplethmap.R | 8 R/ClassMDplot.R | 39 ++ R/ClassPDEplot.R | 3 R/Classplot.R | 250 +++++++++-------- R/DensityScatter.R | 331 ++++++++++++----------- R/DualaxisLinechart.R | 11 R/Fanplot.R | 12 R/GoogleMapsCoordinates.R | 11 R/Heatmap.R | 11 R/InspectDistances.R | 10 R/MDplot.R | 32 ++ R/PDEscatter.R | 12 R/ParetoDensityEstimation.R | 9 R/ParetoRadius.R | 20 - R/Silhouetteplot.R | 11 R/Worldmap.R | 11 R/zplot.R | 8 README.md |only build/partial.rdb |binary inst/NEWS | 6 inst/doc/DataVisualizations.html | 191 ++++++------- man/ABCbarplot.Rd | 4 man/ClassMDplot.Rd | 7 man/DataVisualizations-package.Rd | 2 man/Heatmap.Rd | 2 man/MDplot.Rd | 534 +++++++++++++++++++------------------- man/ShepardDensityScatter.Rd | 8 30 files changed, 895 insertions(+), 732 deletions(-)
More information about DataVisualizations at CRAN
Permanent link
Title: Diagnostics for Pharmacometric Models
Description: Diagnostics for non-linear mixed-effects (population)
models from 'NONMEM' <https://www.iconplc.com/innovation/nonmem/>.
'xpose' facilitates data import, creation of numerical run summary
and provide 'ggplot2'-based graphics for data exploration and model
diagnostics.
Author: Benjamin Guiastrennec [aut, cre, cph],
Andrew C. Hooker [aut, cph],
Sebastian Ueckert [aut, cph],
Mike K. Smith [ctb],
Mats O. Karlsson [aut, cph]
Maintainer: Benjamin Guiastrennec <guiastrennec@gmail.com>
Diff between xpose versions 0.4.11 dated 2020-07-22 and 0.4.12 dated 2021-01-12
DESCRIPTION | 6 +- MD5 | 46 +++++++++---------- NEWS.md | 5 +- R/examples.R | 2 README.md | 6 +- build/vignette.rds |binary inst/doc/access_xpdb_data.html | 38 +++++++--------- inst/doc/customize_plots.html | 70 ++++++++++++++---------------- inst/doc/import_model_outputs.html | 38 +++++++--------- inst/doc/introduction.html | 46 +++++++++---------- inst/doc/multiple_pages.html | 50 ++++++++++----------- inst/doc/vpc.html | 44 +++++++++--------- man/figures/readme_example_figure_1-1.png |binary man/figures/readme_example_figure_2-1.png |binary man/figures/readme_example_figure_3-1.png |binary man/figures/readme_example_figure_4-1.png |binary man/figures/readme_example_figure_5-1.png |binary man/xpdb_ex_pk.Rd | 2 tests/testthat/data/ctrl_psn_vpc.RData |binary tests/testthat/data/ctrl_special.RData |binary tests/testthat/data/psn_vpc/m1.zip |binary tests/testthat/test-update_themes.R | 26 +++++++---- tests/testthat/test-vpc.R | 1 tests/testthat/test-xpose_geom.R | 6 +- 24 files changed, 194 insertions(+), 192 deletions(-)
Title: A 'dplyr' Interface for Crunch
Description: In order to facilitate analysis of datasets hosted on the Crunch
data platform <https://crunch.io/>, the 'crplyr' package implements 'dplyr'
methods on top of the Crunch backend. The usual methods 'select', 'filter',
'group_by', 'summarize', and 'collect' are implemented in such a way as to
perform as much computation on the server and pull as little data locally
as possible.
Author: Greg Freedman Ellis [aut, cre],
Jonathan Keane [aut],
Neal Richardson [aut],
Mike Malecki [aut],
Gordon Shotwell [aut]
Maintainer: Greg Freedman Ellis <greg@crunch.io>
Diff between crplyr versions 0.3.6 dated 2020-07-21 and 0.3.7 dated 2021-01-12
DESCRIPTION | 15 MD5 | 29 - NEWS.md | 5 R/crplyr.R | 8 README.md | 8 inst/doc/plotting.Rmd | 2 inst/doc/plotting.html | 308 ++------------ tests/figs/autoplot/catarray-x-mr-tile.svg | 2 tests/figs/deps.txt | 2 tests/spelling.R | 5 tests/testthat/helper.R | 5 tests/testthat/test-plots-vdiff.R | 10 tests/testthat/test-variable-autoplot.R | 33 + vignettes/plotting.Rmd | 2 vignettes/plotting/0/api/datasets/5c9336/README.md |only vignettes/plotting/0/api/datasets/5c9336/cube-43dc35.json |only vignettes/plotting/0/api/datasets/5c9336/cube-71c70e.json |only 17 files changed, 139 insertions(+), 295 deletions(-)
Title: Wrapper Functions for 'SPM' (Statistical Parametric Mapping)
Version 12 from the 'Wellcome' Trust Centre for 'Neuroimaging'
Description: Installs 'SPM12' to the R library directory and has
associated functions for 'fMRI' and general imaging utilities,
called through 'MATLAB'.
Author: John Muschelli [cre, aut]
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between spm12r versions 2.8.1 dated 2019-01-09 and 2.8.2 dated 2021-01-12
DESCRIPTION | 10 MD5 | 82 +- NEWS.md | 5 R/install_spm12.R | 15 R/spm12_normalize.R | 7 R/spm12_segment.R | 6 R/spm_bwlabel.R | 10 build/vignette.rds |binary inst/doc/fmri_processing_spm12r.R | 46 - inst/doc/fmri_processing_spm12r.Rmd | 2 inst/doc/fmri_processing_spm12r.html | 761 +++++++++++++------------ inst/doc/fmri_task_processing.R | 40 - inst/doc/fmri_task_processing.html | 872 +++++++++++++++------------- inst/doc/fmri_task_processing_acpc.R | 38 - inst/doc/fmri_task_processing_acpc.html | 966 +++++++++++++++++--------------- man/acpc_reorient.Rd | 10 man/bwconncomp.Rd | 13 man/install_spm12.Rd | 6 man/run_matlabbatch.Rd | 10 man/run_spm12_script.Rd | 27 man/spm12_condition.Rd | 10 man/spm12_contrast.Rd | 7 man/spm12_contrast_manager.Rd | 19 man/spm12_contrast_query.Rd | 17 man/spm12_coregister.Rd | 117 ++- man/spm12_coregister.deprecated.Rd | 17 man/spm12_first_level.Rd | 21 man/spm12_first_level_spec.Rd | 45 + man/spm12_fmri_est.Rd | 22 man/spm12_normalize.Rd | 34 - man/spm12_normalize_est.Rd | 21 man/spm12_normalize_write.Rd | 36 - man/spm12_realign.Rd | 41 - man/spm12_realign.deprecated.Rd | 19 man/spm12_realign_est.Rd | 16 man/spm12_results.Rd | 30 man/spm12_segment.Rd | 44 + man/spm12_slice_timing.Rd | 46 + man/spm12_slice_timing.deprecated.Rd | 25 man/spm12_smooth.Rd | 19 man/spm_bwlabel.Rd | 26 vignettes/fmri_processing_spm12r.Rmd | 2 42 files changed, 2064 insertions(+), 1496 deletions(-)
Title: Convert R Graphics to Flash Animations
Description: Using the 'Ming' library
<http://www.libming.org/> to create Flash animations.
Users can either use the 'SWF' device swf() to generate 'SWF' file
directly through plotting functions like plot() and lines(),
or convert images of other formats ('SVG', 'PNG', 'JPEG') into 'SWF'.
Author: Yixuan Qiu, Yihui Xie, Cameron Bracken and authors of included
software. See file AUTHORS for details.
Maintainer: Yixuan Qiu <yixuan.qiu@cos.name>
Diff between R2SWF versions 0.9-4 dated 2020-07-30 and 0.9-5 dated 2021-01-12
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- R/xx2swf.R | 2 +- README.md | 9 +++++---- configure | 22 +++++++++++----------- configure.ac | 6 +++--- inst/NEWS.Rd | 9 +++++++++ man/dev2swf.Rd | 2 +- 8 files changed, 42 insertions(+), 32 deletions(-)
Title: Tools for HTML
Description: Tools for HTML generation and output.
Author: Joe Cheng [aut],
Carson Sievert [aut, cre] (<https://orcid.org/0000-0002-4958-2844>),
Winston Chang [aut],
Yihui Xie [aut],
Jeff Allen [aut],
RStudio [cph]
Maintainer: Carson Sievert <carson@rstudio.com>
Diff between htmltools versions 0.5.0 dated 2020-06-16 and 0.5.1 dated 2021-01-12
htmltools-0.5.0/htmltools/NEWS |only htmltools-0.5.1/htmltools/DESCRIPTION | 8 htmltools-0.5.1/htmltools/MD5 | 41 +- htmltools-0.5.1/htmltools/NAMESPACE | 3 htmltools-0.5.1/htmltools/NEWS.md |only htmltools-0.5.1/htmltools/R/colors.R | 10 htmltools-0.5.1/htmltools/R/html_dependency.R | 123 +++++- htmltools-0.5.1/htmltools/R/html_print.R | 19 htmltools-0.5.1/htmltools/R/images.R | 32 - htmltools-0.5.1/htmltools/R/tags.R | 139 +++++- htmltools-0.5.1/htmltools/R/template.R | 2 htmltools-0.5.1/htmltools/R/utils.R | 28 + htmltools-0.5.1/htmltools/man/capturePlot.Rd | 32 - htmltools-0.5.1/htmltools/man/htmlDependency.Rd | 25 + htmltools-0.5.1/htmltools/man/renderDocument.Rd | 3 htmltools-0.5.1/htmltools/man/save_html.Rd | 9 htmltools-0.5.1/htmltools/man/tagFunction.Rd |only htmltools-0.5.1/htmltools/man/validateCssUnit.Rd | 6 htmltools-0.5.1/htmltools/tests/testthat/test-colors.R | 20 + htmltools-0.5.1/htmltools/tests/testthat/test-deps.r | 300 +++++++++++++-- htmltools-0.5.1/htmltools/tests/testthat/test-print.R | 37 + htmltools-0.5.1/htmltools/tests/testthat/test-tags.r | 25 + htmltools-0.5.1/htmltools/tests/testthat/test-template.R | 1 23 files changed, 733 insertions(+), 130 deletions(-)
Title: Advanced and Fast Data Transformation
Description: A C/C++ based package for advanced data transformation and
statistical computing in R that is extremely fast, flexible and
parsimonious to code with, class-agnostic and programmer friendly.
It is well integrated with base R, 'dplyr' / (grouped) 'tibble',
'data.table' and 'plm' (panel-series and data frames), and non-
destructively handles other matrix or data frame based classes (such as
'ts', 'xts' / 'zoo', 'timeSeries', 'tsibble', 'sf' data frames etc.)
--- Key Features: ---
(1) Advanced statistical programming: A full set of fast statistical functions
supporting grouped and weighted computations on vectors, matrices and
data frames. Fast and programmable grouping, ordering, unique values / rows,
factor generation and interactions. Fast and flexible functions for data
manipulation and data object conversions.
(2) Advanced aggregation: Fast and easy multi-data-type, multi-function,
weighted, parallelized and fully customized data aggregation.
(3) Advanced transformations: Fast row / column arithmetic, (grouped) replacing
and sweeping out of statistics, (grouped, weighted) scaling / standardizing,
between (averaging) and (quasi-)within (centering / demeaning) transformations,
higher-dimensional centering (i.e. multiple fixed effects transformations),
linear prediction / partialling-out, linear model fitting and testing.
(4) Advanced time-computations: Fast (sequences of) lags / leads, and
(lagged / leaded, iterated, quasi-, log-) differences and (compounded)
growth rates on (unordered, irregular) time series and panel data.
Multivariate auto-, partial- and cross-correlation functions for panel data.
Panel data to (ts-)array conversions.
(5) List processing: (Recursive) list search / identification, splitting,
extraction / subsetting, data-apply, and generalized recursive
row-binding / unlisting in 2D.
(6) Advanced data exploration: Fast (grouped, weighted, panel-decomposed)
summary statistics for complex multilevel / panel data.
Author: Sebastian Krantz [aut, cre],
Matt Dowle [ctb],
Arun Srinivasan [ctb],
Laurent Berge [ctb],
Dirk Eddelbuettel [ctb],
Josh Pasek [ctb],
Kevin Tappe [ctb],
R Core Team and contributors worldwide [ctb],
Martyn Plummer [cph],
1999-2016 The R Core Team [cph]
Maintainer: Sebastian Krantz <sebastian.krantz@graduateinstitute.ch>
Diff between collapse versions 1.5.0 dated 2021-01-04 and 1.5.1 dated 2021-01-12
DESCRIPTION | 12 +-- MD5 | 28 +++---- NEWS.md | 12 +++ R/GRP.R | 11 +-- R/fHDbetween_fHDwithin.R | 13 ++- R/flm.R | 2 R/pwcor_pwcov_pwNobs.R | 9 ++ man/recode-replace.Rd | 4 - src/base_radixsort.c | 2 tests/testthat/test-GRP.R | 21 +++-- tests/testthat/test-fHDbetween-fHDwithin-HDB-HDW.R | 74 +++++++++++---------- tests/testthat/test-flm-fFtest.R | 8 +- tests/testthat/test-fmode.R | 3 tests/testthat/test-misc.R | 10 +- tests/testthat/test-varying.R | 2 15 files changed, 128 insertions(+), 83 deletions(-)
Title: Analysis of Factorial Experiments
Description: Convenience functions for analyzing factorial experiments using ANOVA or
mixed models. aov_ez(), aov_car(), and aov_4() allow specification of
between, within (i.e., repeated-measures), or mixed (i.e., split-plot)
ANOVAs for data in long format (i.e., one observation per row),
automatically aggregating multiple observations per individual and cell
of the design. mixed() fits mixed models using lme4::lmer() and computes
p-values for all fixed effects using either Kenward-Roger or Satterthwaite
approximation for degrees of freedom (LMM only), parametric bootstrap
(LMMs and GLMMs), or likelihood ratio tests (LMMs and GLMMs).
afex_plot() provides a high-level interface for interaction or one-way
plots using ggplot2, combining raw data and model estimates. afex uses
type 3 sums of squares as default (imitating commercial statistical software).
Author: Henrik Singmann [aut, cre] (<https://orcid.org/0000-0002-4842-3657>),
Ben Bolker [aut],
Jake Westfall [aut],
Frederik Aust [aut] (<https://orcid.org/0000-0003-4900-788X>),
Mattan S. Ben-Shachar [aut],
Søren Højsgaard [ctb],
John Fox [ctb],
Michael A. Lawrence [ctb],
Ulf Mertens [ctb],
Jonathon Love [ctb],
Russell Lenth [ctb],
Rune Haubo Bojesen Christensen [ctb]
Maintainer: Henrik Singmann <singmann@gmail.com>
Diff between afex versions 0.28-0 dated 2020-09-20 and 0.28-1 dated 2021-01-12
DESCRIPTION | 6 MD5 | 206 +- NAMESPACE | 172 - NEWS | 1892 +++++++++---------- R/afex-package.R | 20 R/afex_plot.R | 1644 ++++++++-------- R/afex_plot_plotting_functions.R | 520 ++--- R/afex_plot_utils.R | 628 +++--- R/allFit.R | 258 +- R/aov_car.R | 1628 ++++++++-------- R/compare.2.vectors.R | 298 +-- R/deprecated.R | 68 R/ems.R | 214 +- R/fhch2010-data.R | 70 R/helpers.R | 194 +- R/ks2013.3-data.R | 56 R/lmerTest_utils.R | 140 - R/md_12.1-data.R | 90 R/md_15.1-data.R | 122 - R/md_16.1-data.R | 68 R/md_16.4-data.R | 68 R/methods.afex_aov.R | 571 ++--- R/mixed.R | 2320 +++++++++++------------ R/nice.R | 698 +++---- R/obk.long-data.R | 92 R/reexport.R | 14 R/residuals.R | 172 - R/round_ps.R | 100 - R/set_contrasts.R | 88 R/sk2011.1-data.R | 90 R/sk2011.2-data.R | 64 R/stroop-data.R | 82 R/test_assumption.R | 86 R/utils.R | 270 +- R/zzz.R | 84 README.md | 1150 +++++------ build/partial.rdb |binary build/vignette.rds |binary inst/doc/afex_analysing_accuracy_data.R | 944 ++++----- inst/doc/afex_analysing_accuracy_data.Rmd | 1508 +++++++-------- inst/doc/afex_analysing_accuracy_data.html | 1962 ++++++++++---------- inst/doc/afex_anova_example.R | 246 +- inst/doc/afex_anova_example.Rmd | 572 ++--- inst/doc/afex_anova_example.html | 2328 +++++++++++------------- inst/doc/afex_mixed_example.R | 514 ++--- inst/doc/afex_mixed_example.Rmd | 900 ++++----- inst/doc/afex_mixed_example.html | 1788 +++++++++--------- inst/doc/afex_plot_introduction.R | 526 ++--- inst/doc/afex_plot_introduction.Rmd | 874 ++++----- inst/doc/afex_plot_introduction.html | 1588 ++++++++-------- inst/doc/afex_plot_supported_models.R | 532 ++--- inst/doc/afex_plot_supported_models.Rmd | 786 ++++---- inst/doc/afex_plot_supported_models.html | 1302 ++++++------- inst/doc/introduction-mixed-models.pdf.asis | 12 man/afex-package.Rd | 96 man/afex_aov-methods.Rd | 269 +- man/afex_options.Rd | 168 - man/afex_plot.Rd | 1778 +++++++++--------- man/all_fit.Rd | 216 +- man/aov_car.Rd | 1196 ++++++------ man/compare.2.vectors.Rd | 168 - man/deprecated.Rd | 52 man/ems.Rd | 98 - man/fhch2010.Rd | 130 - man/ks2013.3.Rd | 82 man/md_12.1.Rd | 104 - man/md_15.1.Rd | 142 - man/md_16.1.Rd | 82 man/md_16.4.Rd | 82 man/mixed.Rd | 1548 +++++++-------- man/nice.Rd | 412 ++-- man/obk.long.Rd | 106 - man/reexports.Rd | 32 man/residuals.afex_aov.Rd | 190 - man/round_ps.Rd | 100 - man/set_sum_contrasts.Rd | 58 man/sk2011.1.Rd | 96 man/sk2011.2.Rd | 148 - man/stroop.Rd | 84 man/test_assumptions.Rd | 108 - tests/testthat.R | 8 tests/testthat/test-afex_aov.R | 294 +-- tests/testthat/test-afex_plot-basics.R | 594 +++--- tests/testthat/test-afex_plot-bugs.R | 172 - tests/testthat/test-afex_plot-default-support.R | 138 - tests/testthat/test-afex_plot-vignette.R | 256 +- tests/testthat/test-aov_car-basic.R | 290 +- tests/testthat/test-aov_car-bugs.R | 550 ++--- tests/testthat/test-aov_car-structural.R | 290 +- tests/testthat/test-assumption_tests.R | 78 tests/testthat/test-compare_2_vectors.R | 18 tests/testthat/test-emmeans-interface.R | 438 ++-- tests/testthat/test-lmerTest-support.R | 62 tests/testthat/test-mixed-bugs.R | 328 +-- tests/testthat/test-mixed-effects.R | 58 tests/testthat/test-mixed-mw.R | 96 tests/testthat/test-mixed-structure.R | 848 ++++---- tests/testthat/test-residuals.R | 120 - vignettes/afex_analysing_accuracy_data.Rmd | 1508 +++++++-------- vignettes/afex_anova_example.Rmd | 572 ++--- vignettes/afex_mixed_example.Rmd | 900 ++++----- vignettes/afex_plot_introduction.Rmd | 874 ++++----- vignettes/afex_plot_supported_models.Rmd | 786 ++++---- vignettes/introduction-mixed-models.pdf.asis | 12 104 files changed, 23746 insertions(+), 23714 deletions(-)
Title: Convert Tibbles or Data Frames to Xts Easily
Description: Facilitate the movement between data frames to 'xts'. Particularly
useful when moving from 'tidyverse' to the widely used 'xts' package, which is
the input format of choice to various other packages. It also allows the user
to use a 'spread_by' argument for a character column 'xts' conversion.
Author: Nico Katzke [aut, cre]
Maintainer: Nico Katzke <nfkatzke@gmail.com>
Diff between tbl2xts versions 1.0.2 dated 2020-08-04 and 1.0.4 dated 2021-01-12
DESCRIPTION | 10 +-- MD5 | 37 ++++++++++--- R/tbl_xts.R | 22 +++++-- R/xts_tbl.R | 7 ++ README.md | 114 +++++++++++++++++++++++++++-------------- inst/doc/tbl2xts_vignette.Rmd | 15 +++++ inst/doc/tbl2xts_vignette.html | 59 ++++++++++++++++++++- inst/docs |only man/tbl_xts.Rd | 12 +++- man/xts_tbl.Rd | 4 + vignettes/index.bib |only vignettes/tbl2xts_vignette.Rmd | 15 +++++ 12 files changed, 231 insertions(+), 64 deletions(-)
Title: Optimum Contribution Selection and Population Genetics
Description: A framework for the optimization of breeding programs via optimum contribution selection and mate allocation. An easy to use set of function for computation of optimum contributions of selection candidates, and of the population genetic parameters to be optimized. These parameters can be estimated using pedigree or genotype information, and include kinships, kinships at native haplotype segments, and breed composition of crossbred individuals. They are suitable for managing genetic diversity, removing introgressed genetic material, and accelerating genetic gain. Additionally, functions are provided for computing genetic contributions from ancestors, inbreeding coefficients, the native effective size, the native genome equivalent, pedigree completeness, and for preparing and plotting pedigrees.
Author: Robin Wellmann
Maintainer: Robin Wellmann <r.wellmann@uni-hohenheim.de>
Diff between optiSel versions 2.0.3 dated 2020-03-12 and 2.0.5 dated 2021-01-12
DESCRIPTION | 10 MD5 | 24 - R/matings.R | 4 build/partial.rdb |binary build/vignette.rds |binary data/Cattle.rda |binary data/ExamplePed.rda |binary data/PedigWithErrors.rda |binary data/Phen.rda |binary data/map.rda |binary inst/doc/ocs-vignette.html | 767 +++++++++++++++++---------------------------- inst/doc/ped-vignette.html | 446 +++++++------------------- inst/doc/seg-vignette.html | 428 ++++++------------------- 13 files changed, 551 insertions(+), 1128 deletions(-)
Title: Analytic Insurance Rating Techniques
Description: Methods for insurance rating. It helps actuaries to implement GLMs within all relevant steps needed to construct
a risk premium from raw data. It provides a data driven strategy for the construction of insurance tariff classes.
This strategy is based on the work by Antonio and Valdez (2012) <doi:10.1007/s10182-011-0152-7>. It also provides recipes
on how to easily perform one-way, or univariate, analyses on an insurance portfolio. In addition it adds functionality
to include reference categories in the levels of the coefficients in the output of a generalized linear regression analysis.
Author: Martin Haringa [aut, cre]
Maintainer: Martin Haringa <mtharinga@gmail.com>
Diff between insurancerating versions 0.6.3 dated 2020-10-28 and 0.6.4 dated 2021-01-12
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NAMESPACE | 2 +- NEWS.md | 6 ++++++ R/MTPL.R | 9 ++++++--- R/model_performance.R | 4 ++-- R/reduce.R | 19 +++++++++++++++---- data/MTPL.rda |binary man/MTPL.Rd | 9 ++++++--- man/summary.reduce.Rd | 6 ++++-- 10 files changed, 52 insertions(+), 27 deletions(-)
More information about insurancerating at CRAN
Permanent link
Title: Analysis of fMRI Experiments
Description: Contains R-functions to perform an fMRI analysis as described in
Polzehl and Tabelow (2019) <DOI:10.1007/978-3-030-29184-6>,
Tabelow et al. (2006) <DOI:10.1016/j.neuroimage.2006.06.029>,
Polzehl et al. (2010) <DOI:10.1016/j.neuroimage.2010.04.241>,
Tabelow and Polzehl (2011) <DOI:10.18637/jss.v044.i11>.
Author: Karsten Tabelow [aut, cre],
Joerg Polzehl [aut],
Brandon Whitcher [ctb],
Dames Sibylle [ctb]
Maintainer: Karsten Tabelow <tabelow@wias-berlin.de>
Diff between fmri versions 1.9.3 dated 2020-02-25 and 1.9.6 dated 2021-01-12
DESCRIPTION | 10 ++-- MD5 | 9 ++-- R/lmslicetime.R | 4 - README.md |only inst/CITATION | 122 ++++++++++++++++++++++++++++---------------------------- src/Makevars | 4 - 6 files changed, 74 insertions(+), 75 deletions(-)
Title: Event History Analysis
Description: Parametric proportional hazards fitting with left truncation and
right censoring for common families of distributions, piecewise constant
hazards, and discrete models. Parametric accelerated failure time models
for left truncated and right censored data. Proportional hazards
models for tabular and register data. Sampling of risk sets in Cox
regression, selections in the Lexis diagram, bootstrapping.
Broström (2012) <doi:10.1201/9781315373942>.
Author: Göran Broström [aut, cre],
Jianming Jin [ctb]
Maintainer: Göran Broström <goran.brostrom@umu.se>
Diff between eha versions 2.8.4 dated 2020-12-15 and 2.8.5 dated 2021-01-12
eha-2.8.4/eha/R/pchreg2.R |only eha-2.8.5/eha/ChangeLog | 51 ++++++ eha-2.8.5/eha/DESCRIPTION | 8 eha-2.8.5/eha/MD5 | 86 +++++----- eha-2.8.5/eha/NAMESPACE | 10 - eha-2.8.5/eha/NEWS.md | 35 ++++ eha-2.8.5/eha/R/aftreg.R | 2 eha-2.8.5/eha/R/age.window.R | 7 eha-2.8.5/eha/R/check.dist.R | 10 - eha-2.8.5/eha/R/compHaz.R |only eha-2.8.5/eha/R/coxreg.R | 18 -- eha-2.8.5/eha/R/eha.R | 2 eha-2.8.5/eha/R/extract.R | 2 eha-2.8.5/eha/R/hazards.R | 151 +++++++++++++++++- eha-2.8.5/eha/R/ltx.R | 33 ++- eha-2.8.5/eha/R/ltx.tpchreg.R | 1 eha-2.8.5/eha/R/pchreg.R |only eha-2.8.5/eha/R/pchreg.fit.R |only eha-2.8.5/eha/R/phreg.R | 43 +---- eha-2.8.5/eha/R/phreg.fit.R | 5 eha-2.8.5/eha/R/plotHaz.R |only eha-2.8.5/eha/R/print.summary.aftreg.R | 251 +++++++++++++++++++++++++++++- eha-2.8.5/eha/R/regtable.R |only eha-2.8.5/eha/R/summary.aftreg.R | 2 eha-2.8.5/eha/R/summary.tpchreg.R | 7 eha-2.8.5/eha/R/tpchreg.R | 26 ++- eha-2.8.5/eha/R/tpchreg.fit.R | 35 +++- eha-2.8.5/eha/R/weibreg.R | 2 eha-2.8.5/eha/R/wfunk.R | 2 eha-2.8.5/eha/inst/doc/eha.html | 144 ++++------------- eha-2.8.5/eha/inst/doc/gompertz.html | 59 ------- eha-2.8.5/eha/inst/doc/parametric.R | 3 eha-2.8.5/eha/inst/doc/parametric.Rmd | 3 eha-2.8.5/eha/inst/doc/parametric.html | 90 ++-------- eha-2.8.5/eha/inst/doc/parametric1.pdf |binary eha-2.8.5/eha/inst/doc/tpchreg.html | 70 +------- eha-2.8.5/eha/man/age.window.Rd | 3 eha-2.8.5/eha/man/check.dist.Rd | 3 eha-2.8.5/eha/man/compHaz.Rd |only eha-2.8.5/eha/man/coxreg.Rd | 1 eha-2.8.5/eha/man/pchreg.Rd |only eha-2.8.5/eha/man/phreg.Rd | 5 eha-2.8.5/eha/man/phreg.fit.Rd | 5 eha-2.8.5/eha/man/plotHaz.Rd |only eha-2.8.5/eha/man/print.summary.aftreg.Rd | 4 eha-2.8.5/eha/man/regtable.Rd |only eha-2.8.5/eha/man/summary.aftreg.Rd | 2 eha-2.8.5/eha/src/init.c | 2 eha-2.8.5/eha/vignettes/parametric.Rmd | 3 49 files changed, 724 insertions(+), 462 deletions(-)
Title: Deriving Expressions of Joint Interventional Distributions and
Transport Formulas in Causal Models
Description: Functions for identification and transportation of causal effects. Provides a conditional causal effect identification algorithm (IDC) by Shpitser, I. and Pearl, J. (2006) <http://ftp.cs.ucla.edu/pub/stat_ser/r329-uai.pdf>, an algorithm for transportability from multiple domains with limited experiments by Bareinboim, E. and Pearl, J. (2014) <http://ftp.cs.ucla.edu/pub/stat_ser/r443.pdf> and a selection bias recovery algorithm by Bareinboim, E. and Tian, J. (2015) <http://ftp.cs.ucla.edu/pub/stat_ser/r445.pdf>. All of the previously mentioned algorithms are based on a causal effect identification algorithm by Tian , J. (2002) <http://ftp.cs.ucla.edu/pub/stat_ser/r309.pdf>.
Author: Santtu Tikka [aut, cre] (<https://orcid.org/0000-0003-4039-4342>)
Maintainer: Santtu Tikka <santtuth@gmail.com>
Diff between causaleffect versions 1.3.10 dated 2019-09-26 and 1.3.12 dated 2021-01-12
causaleffect-1.3.10/causaleffect/R/gather.R |only causaleffect-1.3.12/causaleffect/DESCRIPTION | 26 causaleffect-1.3.12/causaleffect/MD5 | 255 - causaleffect-1.3.12/causaleffect/NAMESPACE | 34 causaleffect-1.3.12/causaleffect/NEWS | 144 causaleffect-1.3.12/causaleffect/R/activate.interventions.R | 62 causaleffect-1.3.12/causaleffect/R/activate.selection.variable.R | 34 causaleffect-1.3.12/causaleffect/R/ancestors.R | 18 causaleffect-1.3.12/causaleffect/R/c.components.R | 44 causaleffect-1.3.12/causaleffect/R/cancel.R | 32 causaleffect-1.3.12/causaleffect/R/cancel.out.R | 120 causaleffect-1.3.12/causaleffect/R/cancel.rc.R | 76 causaleffect-1.3.12/causaleffect/R/causal.effect.R | 123 causaleffect-1.3.12/causaleffect/R/causal.parents.R | 18 causaleffect-1.3.12/causaleffect/R/children.R | 18 causaleffect-1.3.12/causaleffect/R/compare.graphs.R | 28 causaleffect-1.3.12/causaleffect/R/compute.c.factor.R | 62 causaleffect-1.3.12/causaleffect/R/connected.R | 12 causaleffect-1.3.12/causaleffect/R/dSep.R |only causaleffect-1.3.12/causaleffect/R/deconstruct.R | 316 - causaleffect-1.3.12/causaleffect/R/dependencies.R | 32 causaleffect-1.3.12/causaleffect/R/descendants.R | 12 causaleffect-1.3.12/causaleffect/R/descendent.sets.R | 53 causaleffect-1.3.12/causaleffect/R/exclusion.restrictions.R | 32 causaleffect-1.3.12/causaleffect/R/factorize.R | 38 causaleffect-1.3.12/causaleffect/R/generalize.R | 90 causaleffect-1.3.12/causaleffect/R/generalize_ex.R | 90 causaleffect-1.3.12/causaleffect/R/get.expression.R | 26 causaleffect-1.3.12/causaleffect/R/get.expression.internal.R | 168 causaleffect-1.3.12/causaleffect/R/id.R | 314 - causaleffect-1.3.12/causaleffect/R/idc.R | 61 causaleffect-1.3.12/causaleffect/R/identify.R | 108 causaleffect-1.3.12/causaleffect/R/independence.restrictions.R | 30 causaleffect-1.3.12/causaleffect/R/insert.R | 56 causaleffect-1.3.12/causaleffect/R/irrelevant.R | 20 causaleffect-1.3.12/causaleffect/R/is.prefix.R | 4 causaleffect-1.3.12/causaleffect/R/join.R | 76 causaleffect-1.3.12/causaleffect/R/latent.projection.R | 68 causaleffect-1.3.12/causaleffect/R/meta.transport.R | 48 causaleffect-1.3.12/causaleffect/R/observed.graph.R | 10 causaleffect-1.3.12/causaleffect/R/parents.R | 16 causaleffect-1.3.12/causaleffect/R/parse.expression.R | 186 causaleffect-1.3.12/causaleffect/R/parse.graphml.R | 17 causaleffect-1.3.12/causaleffect/R/parse.graphml.internal.R | 48 causaleffect-1.3.12/causaleffect/R/parse.graphml.standard.R | 105 causaleffect-1.3.12/causaleffect/R/parse.joint.R | 26 causaleffect-1.3.12/causaleffect/R/pid.R | 502 +- causaleffect-1.3.12/causaleffect/R/powerset.R |only causaleffect-1.3.12/causaleffect/R/probability.R | 62 causaleffect-1.3.12/causaleffect/R/q.constraints.R | 246 - causaleffect-1.3.12/causaleffect/R/rc.R | 162 causaleffect-1.3.12/causaleffect/R/recover.R | 130 causaleffect-1.3.12/causaleffect/R/sc.components.R | 50 causaleffect-1.3.12/causaleffect/R/set.primes.R | 28 causaleffect-1.3.12/causaleffect/R/simplify.R | 124 causaleffect-1.3.12/causaleffect/R/simplify.expression.R | 178 causaleffect-1.3.12/causaleffect/R/simplify.trmz.R | 106 causaleffect-1.3.12/causaleffect/R/so.factorize.R | 60 causaleffect-1.3.12/causaleffect/R/soid.R | 366 - causaleffect-1.3.12/causaleffect/R/surrogate.outcome.R | 122 causaleffect-1.3.12/causaleffect/R/tr.target.R | 28 causaleffect-1.3.12/causaleffect/R/transport.R | 42 causaleffect-1.3.12/causaleffect/R/trmz.R | 475 +- causaleffect-1.3.12/causaleffect/R/trmz_ex.R | 576 +- causaleffect-1.3.12/causaleffect/R/trso.R | 469 +- causaleffect-1.3.12/causaleffect/R/ts.operator.R | 4 causaleffect-1.3.12/causaleffect/R/unobserved.graph.R | 34 causaleffect-1.3.12/causaleffect/R/verma.constraints.R | 56 causaleffect-1.3.12/causaleffect/R/wrap.dSep.R | 12 causaleffect-1.3.12/causaleffect/R/zero.children.R | 24 causaleffect-1.3.12/causaleffect/R/zzaux.effect.R | 35 causaleffect-1.3.12/causaleffect/build/vignette.rds |binary causaleffect-1.3.12/causaleffect/inst/doc/causaleffect.ltx | 2016 +++++----- causaleffect-1.3.12/causaleffect/inst/doc/causaleffect.pdf |binary causaleffect-1.3.12/causaleffect/inst/doc/simplification.ltx | 1714 ++++---- causaleffect-1.3.12/causaleffect/inst/doc/simplification.pdf |binary causaleffect-1.3.12/causaleffect/man/causal.effect.Rd | 117 causaleffect-1.3.12/causaleffect/man/causaleffect-package.Rd | 144 causaleffect-1.3.12/causaleffect/man/generalize.Rd | 144 causaleffect-1.3.12/causaleffect/man/get.expression.Rd | 68 causaleffect-1.3.12/causaleffect/man/meta.transport.Rd | 133 causaleffect-1.3.12/causaleffect/man/parse.graphml.Rd | 42 causaleffect-1.3.12/causaleffect/man/recover.Rd | 107 causaleffect-1.3.12/causaleffect/man/surrogate.outcome.Rd | 93 causaleffect-1.3.12/causaleffect/man/transport.Rd | 106 causaleffect-1.3.12/causaleffect/man/verma.constraints.rd | 40 causaleffect-1.3.12/causaleffect/man/zzaux.effect.Rd | 96 causaleffect-1.3.12/causaleffect/vignettes/Figures/causalmarkov.pdf | 218 - causaleffect-1.3.12/causaleffect/vignettes/Figures/cexp1.pdf | 218 - causaleffect-1.3.12/causaleffect/vignettes/Figures/cexp2.pdf | 218 - causaleffect-1.3.12/causaleffect/vignettes/Figures/cycle.pdf | 218 - causaleffect-1.3.12/causaleffect/vignettes/Figures/dircycle.pdf | 218 - causaleffect-1.3.12/causaleffect/vignettes/Figures/dirpath.pdf | 218 - causaleffect-1.3.12/causaleffect/vignettes/Figures/discrimination.pdf | 218 - causaleffect-1.3.12/causaleffect/vignettes/Figures/format1.pdf | 218 - causaleffect-1.3.12/causaleffect/vignettes/Figures/format2.pdf | 218 - causaleffect-1.3.12/causaleffect/vignettes/Figures/format3.pdf | 218 - causaleffect-1.3.12/causaleffect/vignettes/Figures/formatreal.pdf | 218 - causaleffect-1.3.12/causaleffect/vignettes/Figures/g1.pdf | 218 - causaleffect-1.3.12/causaleffect/vignettes/Figures/g1sub1.pdf | 218 - causaleffect-1.3.12/causaleffect/vignettes/Figures/g1sub2.pdf | 218 - causaleffect-1.3.12/causaleffect/vignettes/Figures/g2.pdf | 218 - causaleffect-1.3.12/causaleffect/vignettes/Figures/g2ccomp.pdf | 218 - causaleffect-1.3.12/causaleffect/vignettes/Figures/g2sub1.pdf | 218 - causaleffect-1.3.12/causaleffect/vignettes/Figures/gdocalc.pdf | 218 - causaleffect-1.3.12/causaleffect/vignettes/Figures/giden.pdf | 218 - causaleffect-1.3.12/causaleffect/vignettes/Figures/gnonid.pdf | 218 - causaleffect-1.3.12/causaleffect/vignettes/Figures/grule1a.pdf | 218 - causaleffect-1.3.12/causaleffect/vignettes/Figures/grule1b.pdf | 218 - causaleffect-1.3.12/causaleffect/vignettes/Figures/grule1c.pdf | 218 - causaleffect-1.3.12/causaleffect/vignettes/Figures/gtian.pdf | 218 - causaleffect-1.3.12/causaleffect/vignettes/Figures/gxovrzovr.pdf | 218 - causaleffect-1.3.12/causaleffect/vignettes/Figures/gxovrzund.pdf | 218 - causaleffect-1.3.12/causaleffect/vignettes/Figures/gxund.pdf | 218 - causaleffect-1.3.12/causaleffect/vignettes/Figures/gzbpath.pdf | 218 - causaleffect-1.3.12/causaleffect/vignettes/Figures/gzovr.pdf | 218 - causaleffect-1.3.12/causaleffect/vignettes/Figures/gzund.pdf | 218 - causaleffect-1.3.12/causaleffect/vignettes/Figures/nodirpath.pdf | 218 - causaleffect-1.3.12/causaleffect/vignettes/Figures/path.pdf | 218 - causaleffect-1.3.12/causaleffect/vignettes/Figures/wage1.pdf | 218 - causaleffect-1.3.12/causaleffect/vignettes/Figures/wage2.pdf | 218 - causaleffect-1.3.12/causaleffect/vignettes/causaleffect.bib | 1146 ++--- causaleffect-1.3.12/causaleffect/vignettes/causaleffect.ltx | 2016 +++++----- causaleffect-1.3.12/causaleffect/vignettes/giden.pdf | 218 - causaleffect-1.3.12/causaleffect/vignettes/ginsert.pdf | 218 - causaleffect-1.3.12/causaleffect/vignettes/gsimpset.pdf | 294 - causaleffect-1.3.12/causaleffect/vignettes/gtian.pdf | 218 - causaleffect-1.3.12/causaleffect/vignettes/jmlr2e.sty | 694 +-- causaleffect-1.3.12/causaleffect/vignettes/simplification.bib | 420 +- causaleffect-1.3.12/causaleffect/vignettes/simplification.ltx | 1714 ++++---- 130 files changed, 13119 insertions(+), 13098 deletions(-)
Title: Retrieving Information of Proteins from Uniprot
Description: Connect to Uniprot <https://www.uniprot.org/> to retrieve information about proteins using their accession number such information could be name or taxonomy information, For detailed information kindly read the publication <https://www.sciencedirect.com/science/article/pii/S1874391919303859>.
Author: Mohamed Soudy [aut, cre],
Ali Mostafa [aut]
Maintainer: Mohamed Soudy <MohmedSoudy2009@gmail.com>
Diff between UniprotR versions 2.0.1 dated 2020-12-15 and 2.0.2 dated 2021-01-12
UniprotR-2.0.1/UniprotR/man/Enrichment.React.Rd |only UniprotR-2.0.1/UniprotR/man/Enrichment.gprofiler.Rd |only UniprotR-2.0.2/UniprotR/DESCRIPTION | 8 UniprotR-2.0.2/UniprotR/MD5 | 18 - UniprotR-2.0.2/UniprotR/NAMESPACE | 11 UniprotR-2.0.2/UniprotR/R/Getdiseases.R | 10 UniprotR-2.0.2/UniprotR/R/PathwayAnalysis.R | 308 ++++++++++++++++++-- UniprotR-2.0.2/UniprotR/R/PlotGoInfo.R | 47 --- UniprotR-2.0.2/UniprotR/man/Enrichment.BP.Rd |only UniprotR-2.0.2/UniprotR/man/Enrichment.CC.Rd |only UniprotR-2.0.2/UniprotR/man/Enrichment.KEGG.Rd |only UniprotR-2.0.2/UniprotR/man/Enrichment.MF.Rd |only UniprotR-2.0.2/UniprotR/man/Enrichment.REAC.Rd |only UniprotR-2.0.2/UniprotR/man/Pathway.Enr.Rd |only 14 files changed, 320 insertions(+), 82 deletions(-)
Title: Antares Visualizations
Description: Visualize results generated by Antares, a powerful open source software
developed by RTE to simulate and study electric power systems
(more information about 'Antares' here: <https://github.com/AntaresSimulatorTeam/Antares_Simulator>).
This package provides functions that create interactive charts to help
'Antares' users visually explore the results of their simulations.
Author: Veronique Bachelier [aut, cre],
Jalal-Edine Zawam [aut],
Francois Guillem [aut],
Benoit Thieurmel [aut],
Titouan Robert [aut],
Paul Plessiez [aut],
Baptiste Seguinot [ctb],
RTE [cph]
Maintainer: Veronique Bachelier <veronique.bachelier@rte-france.com>
Diff between antaresViz versions 0.15.3 dated 2020-11-13 and 0.15.4 dated 2021-01-12
DESCRIPTION | 8 +++---- MD5 | 8 +++---- NEWS.md | 4 +++ inst/doc/antaresViz.html | 44 ++----------------------------------------- tests/testthat/test-plotXY.R | 1 5 files changed, 16 insertions(+), 49 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-12-18 0.1.0
Title: Genome-Wide Structural Equation Modeling
Description: Melds genome-wide association tests with structural
equation modeling (SEM) using 'OpenMx'. This package contains
low-level C/C++ code to rapidly read genetic data encoded in U.K.
Biobank or 'plink' formats. Prebuilt modeling options include one and
two factor models. Alternately, analyses may utilize arbitrary,
user-provided SEMs. See Verhulst, Maes, & Neale (2017)
<doi:10.1007/s10519-017-9842-6> for details. An updated manuscript is
in preparation.
Author: Joshua N. Pritikin [aut, cre],
Bradley Verhulst [cph],
Gavin Band [cph],
Yann Collet [cph],
Facebook, Inc. [cph],
Yuta Mori [cph],
Shaun Purcell [cph],
Christopher Chang [cph],
Wojciech Mula [cph],
Kim Walisch [cph]
Maintainer: Joshua N. Pritikin <jpritikin@pobox.com>
Diff between gwsem versions 2.0.7 dated 2020-08-30 and 2.0.9 dated 2021-01-12
gwsem-2.0.7/gwsem/src/pgenlib_internal.cpp |only gwsem-2.0.7/gwsem/src/pgenlib_internal.h |only gwsem-2.0.9/gwsem/DESCRIPTION | 6 gwsem-2.0.9/gwsem/MD5 | 49 gwsem-2.0.9/gwsem/R/model.R | 4 gwsem-2.0.9/gwsem/R/report.R | 14 gwsem-2.0.9/gwsem/build/gwsem.pdf |binary gwsem-2.0.9/gwsem/man/GWAS.Rd | 2 gwsem-2.0.9/gwsem/man/isSuspicious.Rd | 2 gwsem-2.0.9/gwsem/man/loadResults.Rd | 2 gwsem-2.0.9/gwsem/man/loadSuspicious.Rd | 2 gwsem-2.0.9/gwsem/man/plot.gwsemResult.Rd | 2 gwsem-2.0.9/gwsem/man/prepareComputePlan.Rd | 2 gwsem-2.0.9/gwsem/man/signif.Rd | 2 gwsem-2.0.9/gwsem/src/disable_plink.h |only gwsem-2.0.9/gwsem/src/loader.cpp | 48 gwsem-2.0.9/gwsem/src/openmx.h | 3 gwsem-2.0.9/gwsem/src/pgenlib_misc.cc |only gwsem-2.0.9/gwsem/src/pgenlib_misc.h |only gwsem-2.0.9/gwsem/src/pgenlib_read.cc |only gwsem-2.0.9/gwsem/src/pgenlib_read.h |only gwsem-2.0.9/gwsem/src/plink2_base.cc | 2355 ---------------------- gwsem-2.0.9/gwsem/src/plink2_base.h | 953 +++----- gwsem-2.0.9/gwsem/src/plink2_bits.cc |only gwsem-2.0.9/gwsem/src/plink2_bits.h |only gwsem-2.0.9/gwsem/tests/testthat/test-covariate.R | 2 gwsem-2.0.9/gwsem/tests/testthat/test-formats.R | 2 gwsem-2.0.9/gwsem/tests/testthat/test-gxe.R | 2 gwsem-2.0.9/gwsem/tests/testthat/test-model.R | 3 gwsem-2.0.9/gwsem/tests/testthat/test-rowFilter.R | 2 30 files changed, 482 insertions(+), 2975 deletions(-)
Title: Generalized Pairwise Comparisons
Description: Implementation of the Generalized Pairwise Comparisons (GPC)
as defined in Buyse (2010) <doi:10.1002/sim.3923> for complete observations,
and extended in Peron (2018) <doi:10.1177/0962280216658320> to deal with right-censoring.
GPC compare two groups of observations (intervention vs. control group)
regarding several prioritized endpoints to estimate the probability that a random observation drawn from
one group performs better than a random observation drawn from the other group (Mann-Whitney parameter).
The net benefit and win ratio statistics,
i.e. the difference and ratio between the probabilities relative to the intervention and control groups,
can then also be estimated. Confidence intervals and p-values are obtained using permutations, a non-parametric bootstrap, or the asymptotic theory.
The software enables the use of thresholds of minimal importance difference,
stratification, non-prioritized endpoints (O'Brien test), and can handle right-censoring and competing-risks.
Author: Brice Ozenne [aut, cre] (<https://orcid.org/0000-0001-9694-2956>),
Julien Peron [ctb],
Eva Cantagallo [aut]
Maintainer: Brice Ozenne <brice.mh.ozenne@gmail.com>
Diff between BuyseTest versions 2.2.1 dated 2021-01-05 and 2.2.3 dated 2021-01-12
DESCRIPTION | 8 MD5 | 141 +- NAMESPACE | 128 - NEWS | 360 ++--- R/0-onLoad.R | 16 R/1-setGeneric.R | 103 - R/BuyseTTEM.R | 1095 +++++++++------- R/BuyseTest-Peron.R | 626 ++++----- R/BuyseTest-check.R | 897 ++++++------- R/BuyseTest-inference.R | 882 ++++++------- R/BuyseTest-initialization.R | 1331 +++++++++----------- R/BuyseTest-package.R | 90 - R/BuyseTest-print.R | 306 ++-- R/BuyseTest.R | 1352 ++++++++++---------- R/BuyseTest.options.R | 208 +-- R/PairScore.R | 106 - R/RcppExports.R | 413 +++--- R/S4-BuysePower-show.R | 88 - R/S4-BuysePower-summary.R | 402 +++--- R/S4-BuysePower.R | 134 +- R/S4-BuyseTest-coef.R | 306 ++-- R/S4-BuyseTest-confint.R | 1518 +++++++++++----------- R/S4-BuyseTest-get.R | 1123 +++++++++------- R/S4-BuyseTest-show.R | 98 - R/S4-BuyseTest-summary.R | 1042 +++++++-------- R/S4-BuyseTest.R | 536 ++++---- R/S4-BuyseTest.options.R | 424 +++--- R/auc.R | 584 ++++---- R/constStrata.R | 176 +- R/discreteRoot.R | 532 ++++---- R/iid.prodlim.R | 372 ++--- R/normexp.R | 210 +-- R/powerBuyseTest.R | 915 ++++++------- R/simBuyseTest.R | 1078 ++++++++-------- R/simCompetingRisks.R | 282 ++-- R/valid.R | 950 +++++++------- build/vignette.rds |binary inst/CITATION | 96 - inst/doc/overview.pdf |binary inst/doc/overview.pdf.asis | 10 inst/optim-iid/FCT_calcOnePair.h | 1724 +++++++++++++------------- man/BuyseTTEM.Rd | 156 +- man/BuyseTest.Rd | 1 man/GPC_cpp.Rd | 4 man/S4BuyseTest-getPseudovalue.Rd |only man/coef.BuyseTestAuc.Rd | 38 man/internal-initialization.Rd | 242 +-- man/predict.BuyseTTEM.Rd | 52 man/simulation.Rd | 292 ++-- src/FCT_buyseTest.cpp | 224 +-- src/FCT_calcAllPairs.h | 177 +- src/RcppExports.cpp | 18 tests/testthat.R | 80 - tests/testthat/test-BuysePower.R | 394 ++--- tests/testthat/test-BuyseTTEM.R | 504 +++---- tests/testthat/test-BuyseTest-CR.R | 466 +++---- tests/testthat/test-BuyseTest-PairScore.R | 238 +-- tests/testthat/test-BuyseTest-Pairs.R | 1192 ++++++++--------- tests/testthat/test-BuyseTest-checkValues.R | 1001 +++++++-------- tests/testthat/test-BuyseTest-correctionTTE.R | 446 +++--- tests/testthat/test-BuyseTest-engine.R | 208 +-- tests/testthat/test-BuyseTest-iid.R | 1432 ++++++++++----------- tests/testthat/test-BuyseTest-neutralAsUnif.R | 204 +-- tests/testthat/test-BuyseTest-operator.R | 159 +- tests/testthat/test-BuyseTest-previousBug.R | 959 +++++++------- tests/testthat/test-BuyseTest-resampling.R | 1198 +++++++++--------- tests/testthat/test-auc.R | 170 +- tests/testthat/test-initSurvival.R | 438 +++--- tests/testthat/test-initThreshold.R | 168 +- tests/testthat/test-otherPackages.R | 296 ++-- vignettes/overview.pdf.asis | 10 vignettes/vignette_CR.Rmd | 146 +- 72 files changed, 15987 insertions(+), 15588 deletions(-)
Title: Statistical Methods for Life Data Analysis
Description: Provides statistical methods and visualizations that are often
used in reliability engineering. Comprises a compact and easily
accessible set of methods and visualization tools that make the
examination and adjustment as well as the analysis and interpretation
of field data (and bench tests) as simple as possible.
Non-parametric estimators like Median Ranks,
Kaplan-Meier (Abernethy, 2006, <ISBN:978-0-9653062-3-2>),
Johnson (Johnson, 1964, <ISBN:978-0444403223>), and Nelson-Aalen
for failure probability estimation within samples that contain
failures as well as censored data are included.
The package supports methods like Maximum Likelihood and Rank Regression,
(Genschel and Meeker, 2010, <DOI:10.1080/08982112.2010.503447>)
for the estimation of multiple parametric lifetime distributions,
as well as the computation of confidence intervals of quantiles and
probabilities using the delta method related to Fisher's confidence
intervals (Meeker and Escobar, 1998, <ISBN:9780471673279>) and the
beta-binomial confidence bounds.
If desired, mixture model analysis can be done with segmented regression
and the EM algorithm.
Besides the well-known Weibull analysis, the package also contains
Monte Carlo methods for the correction and completion of imprecisely
recorded or unknown lifetime characteristics.
(Verband der Automobilindustrie e.V. (VDA), 2016, <ISSN:0943-9412>).
Plots are created statically ('ggplot2') or interactively ('plotly') and
can be customized with functions of the respective visualization package.
The graphical technique of probability plotting as well as the addition
of regression lines and confidence bounds to existing plots are
supported.
Author: Tim-Gunnar Hensel [aut, cre],
David Barkemeyer [aut]
Maintainer: Tim-Gunnar Hensel <tim-gunnar.hensel@tu-berlin.de>
Diff between weibulltools versions 1.0.1 dated 2019-01-29 and 2.0.0 dated 2021-01-12
weibulltools-1.0.1/weibulltools/R/parameter_estimators.R |only weibulltools-1.0.1/weibulltools/R/weibulltools.R |only weibulltools-1.0.1/weibulltools/man/weibulltools.Rd |only weibulltools-2.0.0/weibulltools/DESCRIPTION | 81 weibulltools-2.0.0/weibulltools/MD5 | 184 weibulltools-2.0.0/weibulltools/NAMESPACE | 68 weibulltools-2.0.0/weibulltools/NEWS.md | 149 weibulltools-2.0.0/weibulltools/R/RcppExports.R | 38 weibulltools-2.0.0/weibulltools/R/confidence_intervals.R | 1454 ++++-- weibulltools-2.0.0/weibulltools/R/data.R |only weibulltools-2.0.0/weibulltools/R/delay_distributions.R | 986 +++- weibulltools-2.0.0/weibulltools/R/mileage_distribution.R | 476 +- weibulltools-2.0.0/weibulltools/R/mixture_identification.R | 990 +++- weibulltools-2.0.0/weibulltools/R/ml_estimation.R |only weibulltools-2.0.0/weibulltools/R/model_estimation.R |only weibulltools-2.0.0/weibulltools/R/plot_functions.R | 2314 +++++----- weibulltools-2.0.0/weibulltools/R/plot_functions_generic.R |only weibulltools-2.0.0/weibulltools/R/plot_functions_ggplot2.R |only weibulltools-2.0.0/weibulltools/R/plot_functions_plotly.R |only weibulltools-2.0.0/weibulltools/R/plot_helpers.R |only weibulltools-2.0.0/weibulltools/R/predict.R |only weibulltools-2.0.0/weibulltools/R/probability_estimators.R | 850 ++- weibulltools-2.0.0/weibulltools/R/rank_regression.R |only weibulltools-2.0.0/weibulltools/R/reliability_data.R |only weibulltools-2.0.0/weibulltools/R/weibulltools-package.R |only weibulltools-2.0.0/weibulltools/README.md | 170 weibulltools-2.0.0/weibulltools/build/vignette.rds |binary weibulltools-2.0.0/weibulltools/data |only weibulltools-2.0.0/weibulltools/inst/doc/Life_Data_Analysis_Part_I.R | 105 weibulltools-2.0.0/weibulltools/inst/doc/Life_Data_Analysis_Part_I.Rmd | 344 - weibulltools-2.0.0/weibulltools/inst/doc/Life_Data_Analysis_Part_I.html | 1528 +----- weibulltools-2.0.0/weibulltools/inst/doc/Life_Data_Analysis_Part_II.R | 202 weibulltools-2.0.0/weibulltools/inst/doc/Life_Data_Analysis_Part_II.Rmd | 456 - weibulltools-2.0.0/weibulltools/inst/doc/Life_Data_Analysis_Part_II.html | 867 ++- weibulltools-2.0.0/weibulltools/inst/doc/Life_Data_Analysis_Part_III.R | 113 weibulltools-2.0.0/weibulltools/inst/doc/Life_Data_Analysis_Part_III.Rmd | 230 weibulltools-2.0.0/weibulltools/inst/doc/Life_Data_Analysis_Part_III.html | 589 +- weibulltools-2.0.0/weibulltools/man/alloy.Rd |only weibulltools-2.0.0/weibulltools/man/calculate_ranks.Rd | 7 weibulltools-2.0.0/weibulltools/man/confint_betabinom.Rd | 238 - weibulltools-2.0.0/weibulltools/man/confint_betabinom.default.Rd |only weibulltools-2.0.0/weibulltools/man/confint_fisher.Rd | 190 weibulltools-2.0.0/weibulltools/man/confint_fisher.default.Rd |only weibulltools-2.0.0/weibulltools/man/delta_method.Rd | 126 weibulltools-2.0.0/weibulltools/man/dist_delay.Rd |only weibulltools-2.0.0/weibulltools/man/dist_delay_register.Rd | 30 weibulltools-2.0.0/weibulltools/man/dist_delay_report.Rd | 33 weibulltools-2.0.0/weibulltools/man/dist_mileage.Rd | 113 weibulltools-2.0.0/weibulltools/man/estimate_cdf.Rd |only weibulltools-2.0.0/weibulltools/man/estimate_cdf.default.Rd |only weibulltools-2.0.0/weibulltools/man/figures |only weibulltools-2.0.0/weibulltools/man/johnson_method.Rd | 44 weibulltools-2.0.0/weibulltools/man/kaplan_method.Rd | 72 weibulltools-2.0.0/weibulltools/man/loglik_function.Rd | 85 weibulltools-2.0.0/weibulltools/man/loglik_profiling.Rd | 80 weibulltools-2.0.0/weibulltools/man/mcs_delay.Rd |only weibulltools-2.0.0/weibulltools/man/mcs_delay_register.Rd | 103 weibulltools-2.0.0/weibulltools/man/mcs_delay_report.Rd | 105 weibulltools-2.0.0/weibulltools/man/mcs_delays.Rd | 137 weibulltools-2.0.0/weibulltools/man/mcs_mileage.Rd | 207 weibulltools-2.0.0/weibulltools/man/mixmod_em.Rd | 167 weibulltools-2.0.0/weibulltools/man/mixmod_em.default.Rd |only weibulltools-2.0.0/weibulltools/man/mixmod_regression.Rd | 182 weibulltools-2.0.0/weibulltools/man/mixmod_regression.default.Rd |only weibulltools-2.0.0/weibulltools/man/mixture_em_cpp.Rd | 39 weibulltools-2.0.0/weibulltools/man/ml_estimation.Rd | 152 weibulltools-2.0.0/weibulltools/man/ml_estimation.default.Rd |only weibulltools-2.0.0/weibulltools/man/mr_method.Rd | 62 weibulltools-2.0.0/weibulltools/man/nelson_method.Rd | 43 weibulltools-2.0.0/weibulltools/man/plot_conf.Rd | 198 weibulltools-2.0.0/weibulltools/man/plot_conf.default.Rd |only weibulltools-2.0.0/weibulltools/man/plot_layout.Rd | 50 weibulltools-2.0.0/weibulltools/man/plot_mod.Rd | 155 weibulltools-2.0.0/weibulltools/man/plot_mod.default.Rd |only weibulltools-2.0.0/weibulltools/man/plot_mod_mix.Rd | 159 weibulltools-2.0.0/weibulltools/man/plot_pop.Rd | 121 weibulltools-2.0.0/weibulltools/man/plot_prob.Rd | 164 weibulltools-2.0.0/weibulltools/man/plot_prob.default.Rd |only weibulltools-2.0.0/weibulltools/man/plot_prob_mix.Rd | 175 weibulltools-2.0.0/weibulltools/man/predict_prob.Rd | 61 weibulltools-2.0.0/weibulltools/man/predict_quantile.Rd | 62 weibulltools-2.0.0/weibulltools/man/r_squared_profiling.Rd | 109 weibulltools-2.0.0/weibulltools/man/r_squared_profiling.default.Rd |only weibulltools-2.0.0/weibulltools/man/rank_regression.Rd | 206 weibulltools-2.0.0/weibulltools/man/rank_regression.default.Rd |only weibulltools-2.0.0/weibulltools/man/reliability_data.Rd |only weibulltools-2.0.0/weibulltools/man/shock.Rd |only weibulltools-2.0.0/weibulltools/man/voltage.Rd |only weibulltools-2.0.0/weibulltools/man/weibulltools-package.Rd |only weibulltools-2.0.0/weibulltools/src/RcppExports.cpp | 8 weibulltools-2.0.0/weibulltools/src/em_mixture.cpp | 45 weibulltools-2.0.0/weibulltools/src/johnson_ranks.cpp | 8 weibulltools-2.0.0/weibulltools/tests |only weibulltools-2.0.0/weibulltools/vignettes/Life_Data_Analysis_Part_I.Rmd | 344 - weibulltools-2.0.0/weibulltools/vignettes/Life_Data_Analysis_Part_II.Rmd | 456 - weibulltools-2.0.0/weibulltools/vignettes/Life_Data_Analysis_Part_III.Rmd | 230 96 files changed, 9970 insertions(+), 6990 deletions(-)
Title: Transformation Model Based Estimation of Survival and Regression
Under Dependent Truncation and Independent Censoring
Description: A latent, quasi-independent truncation time is assumed to be linked with the observed dependent truncation time, the event time, and an unknown transformation parameter via a structural transformation model. The transformation parameter is chosen to minimize the conditional Kendall's tau (Martin and Betensky, 2005) <doi:10.1198/016214504000001538> or the regression coefficient estimates (Jones and Crowley, 1992) <doi:10.2307/2336782>. The marginal distribution for the truncation time and the event time are completely left unspecified. The methodology is applied to survival curve estimation and regression analysis.
Author: Sy Han (Steven) Chiou [aut, cre],
Jing Qian [aut]
Maintainer: Sy Han (Steven) Chiou <schiou@utdallas.edu>
Diff between tranSurv versions 1.2.1 dated 2020-07-28 and 1.2.2 dated 2021-01-12
DESCRIPTION | 19 ++++++++++--------- MD5 | 8 ++++---- NEWS.md | 5 ++++- R/trReg.R | 43 ++++++++++++++++++++++++++++++++++--------- man/tranSurv-package.Rd | 9 +++++++-- 5 files changed, 59 insertions(+), 25 deletions(-)
Title: Analyse Citation Data from Google Scholar
Description: Provides functions to extract citation data from Google
Scholar. Convenience functions are also provided for comparing
multiple scholars and predicting future h-index values.
Author: Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>),
James Keirstead [aut],
Gregory Jefferis [ctb],
Gordon Getzinger [ctb],
Jorge Cimentada [ctb],
Max Czapanskiy [ctb],
Dominique Makowski [ctb]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between scholar versions 0.1.7 dated 2018-07-03 and 0.2.0 dated 2021-01-12
scholar-0.1.7/scholar/README.md |only scholar-0.1.7/scholar/man/scholar.Rd |only scholar-0.2.0/scholar/DESCRIPTION | 19 - scholar-0.2.0/scholar/MD5 | 59 +-- scholar-0.2.0/scholar/NAMESPACE | 7 scholar-0.2.0/scholar/NEWS.md |only scholar-0.2.0/scholar/R/coauthors.R |only scholar-0.2.0/scholar/R/data.R | 15 scholar-0.2.0/scholar/R/getCompleteAuthors.R | 89 ++++ scholar-0.2.0/scholar/R/predict.r | 4 scholar-0.2.0/scholar/R/publications.r | 82 ++++ scholar-0.2.0/scholar/R/scholar-package.r | 76 +--- scholar-0.2.0/scholar/R/scholar.r | 261 ++++++++------ scholar-0.2.0/scholar/R/sysdata.rda |binary scholar-0.2.0/scholar/R/utils.R |only scholar-0.2.0/scholar/R/zzz.r | 102 ----- scholar-0.2.0/scholar/build/partial.rdb |only scholar-0.2.0/scholar/build/vignette.rds |binary scholar-0.2.0/scholar/inst/CITATION | 4 scholar-0.2.0/scholar/inst/doc/scholar.R | 18 - scholar-0.2.0/scholar/inst/doc/scholar.html | 393 +++++++++++++--------- scholar-0.2.0/scholar/man/author_position.Rd |only scholar-0.2.0/scholar/man/format_authors.Rd |only scholar-0.2.0/scholar/man/get_coauthors.Rd | 2 scholar-0.2.0/scholar/man/get_complete_authors.Rd | 10 scholar-0.2.0/scholar/man/get_impactfactor.Rd | 3 scholar-0.2.0/scholar/man/get_journalrank.Rd |only scholar-0.2.0/scholar/man/get_num_top_journals.Rd | 2 scholar-0.2.0/scholar/man/get_publications.Rd | 15 scholar-0.2.0/scholar/man/get_scholar_id.Rd |only scholar-0.2.0/scholar/man/get_scholar_resp.Rd |only scholar-0.2.0/scholar/man/plot_coauthors.Rd | 2 scholar-0.2.0/scholar/man/predict_h_index.Rd | 4 scholar-0.2.0/scholar/man/scholar-package.Rd |only scholar-0.2.0/scholar/man/set_scholar_mirror.Rd |only scholar-0.2.0/scholar/man/tidy_id.Rd | 2 scholar-0.2.0/scholar/tests |only 37 files changed, 693 insertions(+), 476 deletions(-)
Title: Import Air Quality Monitoring Data in a Fast and Easy Way
Description: A collection of tools to access prepared air quality monitoring
data files from web servers with ease and speed. Air quality data are
sourced from open and publicly accessible repositories and can be found in
these locations:
<https://www.eea.europa.eu/data-and-maps/data/airbase-the-european-air-quality-database-8>
and <https://discomap.eea.europa.eu/map/fme/AirQualityExport.htm>. The web
server space has been provided by Ricardo Energy & Environment.
Author: Stuart K. Grange [cre, aut] (<https://orcid.org/0000-0003-4093-3596>)
Maintainer: Stuart K. Grange <stuart.grange@york.ac.uk>
Diff between saqgetr versions 0.2.1 dated 2020-11-19 and 0.2.21 dated 2021-01-12
DESCRIPTION | 11 +++++------ MD5 | 19 ++++++++++--------- NEWS.md | 7 ++++++- R/get_saq_observations.R | 36 +++++++++++++----------------------- R/get_saq_processes.R | 13 +++++++++---- R/get_saq_simple_summaries.R | 22 +++++++++++++++------- R/get_saq_sites.R | 13 +++++++++---- R/get_saq_validity.R | 8 ++++---- R/read_csv_gz_remote.R |only man/get_saq_observations.Rd | 4 ++-- man/get_saq_simple_summaries.Rd | 7 +++++++ 11 files changed, 80 insertions(+), 60 deletions(-)
Title: Handling Linear Gaussian Bayesian Networks
Description: Creation, manipulation, simulation of linear Gaussian Bayesian
networks from text files and more...
Author: Jean-Baptiste Denis [aut, cre], Marco Scutari [ctb]
Maintainer: Marco Scutari <marco.scutari@gmail.com>
Diff between rbmn versions 0.9-3 dated 2020-02-13 and 0.9-4 dated 2021-01-12
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/f07.normal.code.r | 44 ++++++++++++++++++++++---------------------- man/condi4joint.Rd | 4 ++-- 4 files changed, 31 insertions(+), 31 deletions(-)
Title: Interface to the JavaScript Library 'amCharts 4'
Description: Creates JavaScript charts. The charts can be included in 'Shiny' apps and R markdown documents, or viewed from the R console and 'RStudio' viewer. Based on the JavaScript library 'amCharts 4' and the R packages 'htmlwidgets' and 'reactR'. Currently available types of chart are: vertical and horizontal bar chart, radial bar chart, stacked bar chart, vertical and horizontal Dumbbell chart, line chart, scatter chart, range area chart, gauge chart, boxplot chart, and pie chart.
Author: Stéphane Laurent [aut, cre],
Antanas Marcelionis [ctb, cph] ('amCharts' library
(https://www.amcharts.com/)),
Terence Eden [ctb, cph] ('SuperTinyIcons' library
(https://github.com/edent/SuperTinyIcons/)),
Tom Alexander [ctb, cph] ('regression-js' library
(https://github.com/Tom-Alexander/regression-js))
Maintainer: Stéphane Laurent <laurent_step@outlook.fr>
Diff between rAmCharts4 versions 1.2.0 dated 2020-11-27 and 1.3.0 dated 2021-01-12
DESCRIPTION | 8 MD5 | 25 + NAMESPACE | 2 NEWS.md | 6 R/amBoxplotChart.R | 2 R/amPieChart.R |only R/amStackedBarChart.R | 2 R/legend.R | 13 + R/shiny.R | 18 + README.md | 2 inst/htmlwidgets/amChart4.js | 492 ++++++++++++++++++++++++++++++++++++--- inst/htmlwidgets/amChart4.js.map | 2 man/amLegend.Rd | 18 + man/amPieChart.Rd |only man/updateAmPieChart.Rd |only 15 files changed, 539 insertions(+), 51 deletions(-)
Title: Stochastic Simulation of Streamflow Time Series using Phase
Randomization
Description: Provides a simulation framework to simulate streamflow time series with similar
main characteristics as observed data. These characteristics include the distribution of daily
streamflow values and their temporal correlation as expressed by short- and long-range
dependence. The approach is based on the randomization of the phases of the Fourier
transform or the phases of the wavelet transform. The function prsim() is applicable
to single site simulation and uses the Fourier transform.
The function prsim.wave() extends the approach to multiple sites
and is based on the complex wavelet transform.
We further use the flexible four-parameter Kappa distribution,
which allows for the extrapolation to yet unobserved low and high flows.
Alternatively, the empirical or any other distribution can be used.
A detailed description of the simulation approach for single sites
and an application example can be found in <https://hess.copernicus.org/articles/23/3175/2019/>.
A detailed description and evaluation of the wavelet-based multi-site approach
can be found in <https://hess.copernicus.org/articles/24/3967/2020/>.
Author: Manuela Brunner [aut, cre] (<https://orcid.org/0000-0001-8824-877X>),
Reinhard Furrer [aut] (<https://orcid.org/0000-0002-6319-2332>)
Maintainer: Manuela Brunner <manuela.i.brunner@gmail.com>
Diff between PRSim versions 1.2-2 dated 2020-05-28 and 1.3-1 dated 2021-01-12
PRSim-1.2-2/PRSim/data/datalist |only PRSim-1.3-1/PRSim/DESCRIPTION | 18 +- PRSim-1.3-1/PRSim/MD5 | 37 +++-- PRSim-1.3-1/PRSim/NAMESPACE | 5 PRSim-1.3-1/PRSim/R/fun_stoch_sim_weather.R |only PRSim-1.3-1/PRSim/build/partial.rdb |binary PRSim-1.3-1/PRSim/data/simulations.rda |binary PRSim-1.3-1/PRSim/data/weather_multi_sites.rda |only PRSim-1.3-1/PRSim/data/weather_sim_multi_sites.rda |only PRSim-1.3-1/PRSim/demo/00Index | 2 PRSim-1.3-1/PRSim/demo/PRSim-validate.R | 2 PRSim-1.3-1/PRSim/demo/PRSim_wave.R | 154 +++++++++++++++++++-- PRSim-1.3-1/PRSim/demo/PRSim_weather-validate.R |only PRSim-1.3-1/PRSim/demo/PRSim_weather.R |only PRSim-1.3-1/PRSim/man/PRSim-package.Rd | 12 + PRSim-1.3-1/PRSim/man/fun_stoch_sim.Rd | 2 PRSim-1.3-1/PRSim/man/fun_stoch_sim_wave.Rd | 2 PRSim-1.3-1/PRSim/man/fun_stoch_sim_weather.Rd |only PRSim-1.3-1/PRSim/man/runoff.Rd | 2 PRSim-1.3-1/PRSim/man/runoff_multi_sites.Rd | 2 PRSim-1.3-1/PRSim/man/simulations.Rd | 10 - PRSim-1.3-1/PRSim/man/simulations_multi_sites.Rd | 2 PRSim-1.3-1/PRSim/man/weather_multi_sites.Rd |only PRSim-1.3-1/PRSim/man/weather_sim_multi_sites.Rd |only 24 files changed, 201 insertions(+), 49 deletions(-)
Title: Estimate Sample Size Based on Precision Rather than Power
Description: Estimate sample size based on precision rather than
power. 'precisely' is a study planning tool to calculate sample size
based on precision. Power calculations are focused
on whether or not an estimate will be statistically significant;
calculations of precision are based on the same principles as power
calculation but turn the focus to the width of the confidence
interval. 'precisely' is based on the work of Rothman and Greenland
(2018) <doi: 10.1097/EDE.0000000000000876>.
Author: Malcolm Barrett [aut, cre] (<https://orcid.org/0000-0003-0299-5825>)
Maintainer: Malcolm Barrett <malcolmbarrett@gmail.com>
Diff between precisely versions 0.1.0 dated 2020-06-02 and 0.1.1 dated 2021-01-12
DESCRIPTION | 8 MD5 | 31 - NEWS.md |only R/precision.R | 2 R/sample_size.R | 2 R/upper_limit.R | 2 README.md | 18 - build/vignette.rds |binary inst/doc/introduction-to-precisely.Rmd | 2 inst/doc/introduction-to-precisely.html | 532 ++++++++++---------------------- man/map_precisely.Rd | 4 man/n_risk_difference.Rd | 2 man/precision_risk_difference.Rd | 2 man/theme_precisely.Rd | 2 man/upper_risk_difference.Rd | 2 tests/testthat/test-plot_precisely.R | 12 vignettes/introduction-to-precisely.Rmd | 2 17 files changed, 230 insertions(+), 393 deletions(-)
Title: Enterprise Streamlined 'Shiny' Application Framework
Description: An enterprise-targeted scalable and UI-standardized 'shiny' framework
including a variety of developer convenience functions with the goal of both
streamlining robust application development while assisting with creating a
consistent user experience regardless of application or developer.
Author: Constance Brett [aut, cre],
Isaac Neuhaus [aut] (canvasXpress JavaScript Library Maintainer),
Ger Inberg [ctb],
Bristol-Meyers Squibb (BMS) [cph]
Maintainer: Constance Brett <connie@aggregate-genius.com>
Diff between periscope versions 0.5.3 dated 2021-01-06 and 0.5.4 dated 2021-01-12
periscope-0.5.3/periscope/tests/testthat/sample_app/log |only periscope-0.5.4/periscope/DESCRIPTION | 6 +- periscope-0.5.4/periscope/MD5 | 22 ++++------ periscope-0.5.4/periscope/NEWS.md | 3 + periscope-0.5.4/periscope/inst/doc/downloadFile-module.html | 4 - periscope-0.5.4/periscope/inst/doc/downloadablePlot-module.html | 4 - periscope-0.5.4/periscope/inst/doc/downloadableTable-module.html | 4 - periscope-0.5.4/periscope/inst/doc/new-application.html | 4 - periscope-0.5.4/periscope/tests/testthat/test_download_file.R | 2 periscope-0.5.4/periscope/tests/testthat/test_downloadable_plot.R | 10 +++- periscope-0.5.4/periscope/tests/testthat/test_downloadable_table.R | 2 periscope-0.5.4/periscope/tests/testthat/test_ui_functions.R | 14 +++--- 12 files changed, 43 insertions(+), 32 deletions(-)
Title: Synthetic Control Methods with Micro- And Meso-Level Data
Description: A generalization of the 'Synth' package that is
designed for data at a more granular level (e.g., micro-level).
Provides functions to construct weights (including propensity
score-type weights) and run analyses for synthetic control methods
with micro- and meso-level data; see Robbins, Saunders, and Kilmer
(2017) <doi:10.1080/01621459.2016.1213634> and Robbins and Davenport
(2021) <doi:10.18637/jss.v097.i02>.
Author: Michael Robbins [aut, cre],
Steven Davenport [aut]
Maintainer: Michael Robbins <mrobbins@rand.org>
Diff between microsynth versions 2.0.13 dated 2019-04-10 and 2.0.17 dated 2021-01-12
DESCRIPTION | 44 MD5 | 39 NEWS.md | 2 R/microsynth-class.R | 127 - R/microsynth.R | 1653 +++++++++---------- R/miscellaneous.R | 129 - R/plot_microsynth.R | 547 +++--- R/results.r | 1420 ++++++++-------- R/weights.R | 2205 +++++++++++++------------- build/vignette.rds |binary data/seattledmi.rda |binary inst/CITATION |only inst/doc/aggregating_variables_over_time.html | 188 ++ inst/doc/ensuring_model_feasibility.html | 188 ++ inst/doc/introduction.R | 50 inst/doc/introduction.html | 640 ++++--- man/microsynth.Rd | 343 ++-- man/plot_microsynth.Rd | 36 man/print.microsynth.Rd | 2 man/seattledmi.Rd | 62 man/summary.microsynth.Rd | 2 21 files changed, 4209 insertions(+), 3468 deletions(-)
Title: Feature Extraction from Biological Sequences
Description: Extracts features from biological sequences. It contains most features which are presented in related work and also includes features which have never been introduced before. It extracts numerous features from Nucleotide and Peptide sequences. Each feature converts the input sequences to discrete numbers in order to use them as predictors in machine learning models. There are many features and information which are hidden inside a sequence. Utilizing the package, users can convert biological sequences to discrete models based on chosen properties. References: 'iLearn' 'Z. Chen et al.' (2019) <DOI:10.1093/bib/bbz041>. 'iFeature' 'Z. Chen et al.' (2018) <DOI:10.1093/bioinformatics/bty140>. <https://CRAN.R-project.org/package=rDNAse>. 'PseKRAAC' 'Y. Zuo et al.' 'PseKRAAC: a flexible web server for generating pseudo K-tuple reduced amino acids composition' (2017) <DOI:10.1093/bioinformatics/btw564>. 'iDNA6mA-PseKNC' 'P. Feng et al.' 'iDNA6mA-PseKNC: Identifying DNA N6-methyladenosine sites by incorporating nucleotide physicochemical properties into PseKNC' (2019) <DOI:10.1016/j.ygeno.2018.01.005>. 'I. Dubchak et al.' 'Prediction of protein folding class using global description of amino acid sequence' (1995) <DOI:10.1073/pnas.92.19.8700>. 'W. Chen et al.' 'Identification and analysis of the N6-methyladenosine in the Saccharomyces cerevisiae transcriptome' (2015) <DOI:10.1038/srep13859>.
Author: Sare Amerifar
Maintainer: Sare Amerifar <sare.ameri.01@gmail.com>
Diff between ftrCOOL versions 1.1.0 dated 2020-12-16 and 1.1.1 dated 2021-01-12
DESCRIPTION | 6 +- MD5 | 95 +++++++++++++++++++++++----------------------- NEWS.md |only R/AAindex.R | 1 R/ANF_DNA.R | 1 R/ANF_RNA.R | 1 R/ASA.R | 2 R/Blosum62.R | 3 + R/DisorderB.R | 7 +-- R/DisorderS.R | 3 - R/EAAComposition.R | 2 R/EGAAComposition.R | 2 R/ENUComposition_DNA.R | 3 + R/ENUComposition_RNA.R | 3 + R/KNNProtein.R | 4 - R/LocalPoSpKAAF.R | 2 R/LocalPoSpKNUCF_DNA.R | 2 R/LocalPoSpKNUCF_RNA.R | 2 R/NCP_DNA.R | 2 R/NCP_RNA.R | 1 R/NUC2Binary_DNA.R | 2 R/NUC2Binary_RNA.R | 2 R/PSSM.R | 3 + R/SSEB.R | 2 R/SSES.R | 1 R/TorsionAngle.R | 1 man/AAindex.Rd | 1 man/ANF_DNA.Rd | 1 man/ANF_RNA.Rd | 1 man/ASA.Rd | 2 man/BLOSUM62.Rd | 3 + man/DisorderB.Rd | 5 +- man/DisorderS.Rd | 3 - man/EAAComposition.Rd | 1 man/EGAAComposition.Rd | 2 man/ENUComposition_DNA.Rd | 3 + man/ENUComposition_RNA.Rd | 3 + man/KNNProtein.Rd | 4 - man/LocalPoSpKAAF.Rd | 2 man/LocalPoSpKNUCF_DNA.Rd | 2 man/LocalPoSpKNUCF_RNA.Rd | 2 man/NCP_DNA.Rd | 2 man/NCP_RNA.Rd | 1 man/NUC2Binary_DNA.Rd | 2 man/NUC2Binary_RNA.Rd | 2 man/PSSM.Rd | 2 man/SSEB.Rd | 2 man/SSES.Rd | 1 man/TorsionAngle.Rd | 1 49 files changed, 138 insertions(+), 63 deletions(-)
Title: Easily Scrape and Process AFL Data
Description: An easy package for scraping and processing Australia Rules Football (AFL)
data. 'fitzRoy' provides a range of functions for accessing publicly available data
from 'AFL Tables' <https://afltables.com/afl/afl_index.html>, 'Footy Wire' <https://www.footywire.com> and
'The Squiggle' <https://squiggle.com.au>. Further functions allow for easy processing,
cleaning and transformation of this data into formats that can be used for analysis.
Author: James Day [cre, aut],
Robert Nguyen [aut],
Matthew Erbs [ctb],
Oscar Lane [aut],
Jason Zivkovic [ctb]
Maintainer: James Day <jamesthomasday@gmail.com>
Diff between fitzRoy versions 0.3.2 dated 2020-05-23 and 0.3.3 dated 2021-01-12
fitzRoy-0.3.2/fitzRoy/NEWS.md |only fitzRoy-0.3.2/fitzRoy/README.md |only fitzRoy-0.3.2/fitzRoy/man/calculate_round.Rd |only fitzRoy-0.3.3/fitzRoy/DESCRIPTION | 14 fitzRoy-0.3.3/fitzRoy/MD5 | 74 + fitzRoy-0.3.3/fitzRoy/NAMESPACE | 8 fitzRoy-0.3.3/fitzRoy/R/afl_fixture.R |only fitzRoy-0.3.3/fitzRoy/R/afl_helpers.R |only fitzRoy-0.3.3/fitzRoy/R/afltables_player.R | 29 fitzRoy-0.3.3/fitzRoy/R/afltables_player_main.R | 17 fitzRoy-0.3.3/fitzRoy/R/aflw-player_stats.R |only fitzRoy-0.3.3/fitzRoy/R/fetch_ladder.R |only fitzRoy-0.3.3/fitzRoy/R/footywire-calcs.R | 426 +++++----- fitzRoy-0.3.3/fitzRoy/R/footywire-results.R |only fitzRoy-0.3.3/fitzRoy/R/fryziggafl-player_stats.R |only fitzRoy-0.3.3/fitzRoy/R/helper.R |only fitzRoy-0.3.3/fitzRoy/R/sysdata.rda |binary fitzRoy-0.3.3/fitzRoy/R/team_colour_palettes.R |only fitzRoy-0.3.3/fitzRoy/R/womens_stats.R | 10 fitzRoy-0.3.3/fitzRoy/build/vignette.rds |binary fitzRoy-0.3.3/fitzRoy/inst/doc/elo-ratings-example.Rmd | 2 fitzRoy-0.3.3/fitzRoy/inst/doc/elo-ratings-example.html | 184 ++-- fitzRoy-0.3.3/fitzRoy/inst/doc/mens-stats.Rmd | 2 fitzRoy-0.3.3/fitzRoy/inst/doc/mens-stats.html | 160 ++- fitzRoy-0.3.3/fitzRoy/inst/doc/using-fryzigg-stats.R |only fitzRoy-0.3.3/fitzRoy/inst/doc/using-fryzigg-stats.Rmd |only fitzRoy-0.3.3/fitzRoy/inst/doc/using-fryzigg-stats.html |only fitzRoy-0.3.3/fitzRoy/inst/doc/womens-stats.Rmd | 2 fitzRoy-0.3.3/fitzRoy/inst/doc/womens-stats.html | 28 fitzRoy-0.3.3/fitzRoy/man/fetch_ladder.Rd |only fitzRoy-0.3.3/fitzRoy/man/fetch_ladder_afl.Rd |only fitzRoy-0.3.3/fitzRoy/man/fitzRoy-package.Rd | 2 fitzRoy-0.3.3/fitzRoy/man/get_afl_colour_palettes.Rd |only fitzRoy-0.3.3/fitzRoy/man/get_afl_cookie.Rd |only fitzRoy-0.3.3/fitzRoy/man/get_afl_fixture.Rd |only fitzRoy-0.3.3/fitzRoy/man/get_aflw_match_data.Rd | 2 fitzRoy-0.3.3/fitzRoy/man/get_aflw_player_stats.Rd |only fitzRoy-0.3.3/fitzRoy/man/get_footywire_match_results.Rd |only fitzRoy-0.3.3/fitzRoy/man/get_footywire_stats.Rd | 1 fitzRoy-0.3.3/fitzRoy/man/get_fryzigg_stats.Rd |only fitzRoy-0.3.3/fitzRoy/man/verify_year.Rd |only fitzRoy-0.3.3/fitzRoy/tests/testthat/test-afl_fixture.R |only fitzRoy-0.3.3/fitzRoy/tests/testthat/test-afltables.R | 7 fitzRoy-0.3.3/fitzRoy/tests/testthat/test-afltables_player.R | 2 fitzRoy-0.3.3/fitzRoy/tests/testthat/test-aflw_player_stats.R |only fitzRoy-0.3.3/fitzRoy/tests/testthat/test-footywire.R | 34 fitzRoy-0.3.3/fitzRoy/tests/testthat/test-footywire_results.R |only fitzRoy-0.3.3/fitzRoy/tests/testthat/test-fryzigg-api-works.R |only fitzRoy-0.3.3/fitzRoy/vignettes/elo-ratings-example.Rmd | 2 fitzRoy-0.3.3/fitzRoy/vignettes/mens-stats.Rmd | 2 fitzRoy-0.3.3/fitzRoy/vignettes/using-fryzigg-stats.Rmd |only fitzRoy-0.3.3/fitzRoy/vignettes/womens-stats.Rmd | 2 52 files changed, 616 insertions(+), 394 deletions(-)
Title: Tools for the Analysis of Epidemiological Data
Description: Tools for the analysis of epidemiological and surveillance data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, computation of confidence intervals around incidence risk and incidence rate estimates and sample size calculations for cross-sectional, case-control and cohort studies. Surveillance tools include functions to calculate an appropriate sample size for 1- and 2-stage representative freedom surveys, functions to estimate surveillance system sensitivity and functions to support scenario tree modelling analyses.
Author: Mark Stevenson <mark.stevenson1@unimelb.edu.au> and Evan Sergeant <evansergeant@gmail.com> with contributions from Telmo Nunes, Cord Heuer, Jonathon Marshall, Javier Sanchez, Ron Thornton, Jeno Reiczigel, Jim Robison-Cox, Paola Sebastiani, Peter Solymos, Kazuki Yoshida, Geoff Jones, Sarah Pirikahu, Simon Firestone, Ryan Kyle, Johann Popp, Mathew Jay and Charles Reynard.
Maintainer: Mark Stevenson <mark.stevenson1@unimelb.edu.au>
Diff between epiR versions 2.0.17 dated 2020-12-04 and 2.0.19 dated 2021-01-12
DESCRIPTION | 8 MD5 | 39 +- NEWS | 15 R/rsu.spp.rs.R | 28 - build/vignette.rds |binary inst/doc/epiR_RSurveillance.html | 4 inst/doc/epiR_descriptive.R | 127 +++---- inst/doc/epiR_descriptive.Rmd | 170 ++++------ inst/doc/epiR_descriptive.html | 646 +++++++++++++++++++-------------------- inst/doc/epiR_sample_size.R |only inst/doc/epiR_sample_size.Rmd |only inst/doc/epiR_sample_size.html |only inst/doc/epiR_surveillance.Rmd | 2 inst/doc/epiR_surveillance.html | 8 man/epi.about.Rd | 2 man/epi.psi.Rd | 8 man/rsu.spp.rs.Rd | 13 man/rsu.sssep.rbsrg.Rd | 2 man/rsu.sssep.rs.Rd | 2 vignettes/epiR_descriptive.Rmd | 170 ++++------ vignettes/epiR_sample_size.Rmd |only vignettes/epiR_sample_size.bib |only vignettes/epiR_surveillance.Rmd | 2 23 files changed, 617 insertions(+), 629 deletions(-)
Title: Inter-Widget Interactivity for HTML Widgets
Description: Provides building blocks for allowing HTML widgets to communicate
with each other, with Shiny or without (i.e. static .html files). Currently
supports linked brushing and filtering.
Author: Joe Cheng [aut],
Carson Sievert [aut, cre] (<https://orcid.org/0000-0002-4958-2844>),
RStudio [cph],
jQuery Foundation [cph] (jQuery library and jQuery UI library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/www/shared/jquery-AUTHORS.txt),
Mark Otto [ctb] (Bootstrap library),
Jacob Thornton [ctb] (Bootstrap library),
Bootstrap contributors [ctb] (Bootstrap library),
Twitter, Inc [cph] (Bootstrap library),
Brian Reavis [ctb, cph] (selectize.js library),
Kristopher Michael Kowal [ctb, cph] (es5-shim library),
es5-shim contributors [ctb, cph] (es5-shim library),
Denis Ineshin [ctb, cph] (ion.rangeSlider library),
Sami Samhuri [ctb, cph] (Javascript strftime library)
Maintainer: Carson Sievert <carson@rstudio.com>
Diff between crosstalk versions 1.1.0.1 dated 2020-03-13 and 1.1.1 dated 2021-01-12
DESCRIPTION | 17 MD5 | 30 NEWS.md | 8 R/controls.R | 2 R/crosstalk.R | 240 +++---- README.md | 9 inst/lib/jquery/jquery-AUTHORS.txt | 168 ++--- inst/lib/jquery/jquery.js | 1240 ++++++++++++++++++++++--------------- inst/lib/jquery/jquery.min.js | 4 inst/lib/jquery/jquery.min.map | 2 man/ClientValue.Rd | 124 ++- man/SharedData.Rd | 273 +++++--- man/filter_select.Rd | 14 man/filter_slider.Rd | 31 man/scale_fill_selection.Rd | 7 tests/testthat/test-crosstalk.R | 2 16 files changed, 1332 insertions(+), 839 deletions(-)
Title: Agricultural Datasets
Description: Datasets from books, papers, and websites related to agriculture.
Example graphics and analyses are included. Data come from small-plot trials,
multi-environment trials, uniformity trials, yield monitors, and more.
Author: Kevin Wright [aut, cre] (<https://orcid.org/0000-0002-0617-8673>)
Maintainer: Kevin Wright <kw.stat@gmail.com>
Diff between agridat versions 1.17 dated 2020-08-03 and 1.18 dated 2021-01-12
DESCRIPTION | 7 MD5 | 464 +++++++++++++++++----------------- NEWS.md | 9 build/vignette.rds |binary data/damesa.maize.txt |only data/jayaraman.bamboo.txt |only data/nair.turmeric.uniformity.txt |only data/shafi.tomato.uniformity.txt |only inst/doc/agridat_data.Rmd | 107 ++++--- inst/doc/agridat_data.html | 119 +++++--- inst/doc/agridat_examples.R | 437 ++++++++++++++++---------------- inst/doc/agridat_examples.Rmd | 451 +++++++++++++++++---------------- inst/doc/agridat_examples.html | 149 +++------- inst/doc/agridat_intro.Rmd | 6 inst/doc/agridat_intro.html | 32 +- man/aastveit.barley.Rd | 4 man/acorsi.grayleafspot.Rd | 3 man/adugna.sorghum.Rd | 2 man/agridat.Rd | 7 man/allcroft.lodging.Rd | 2 man/alwan.lamb.Rd | 6 man/ars.earlywhitecorn96.Rd | 38 +- man/australia.soybean.Rd | 2 man/baker.barley.uniformity.Rd | 2 man/baker.strawberry.uniformity.Rd | 2 man/baker.wheat.uniformity.Rd | 20 - man/batchelor.uniformity.Rd | 4 man/battese.survey.Rd | 4 man/beall.webworms.Rd | 4 man/beaven.barley.Rd | 2 man/besag.bayesian.Rd | 3 man/besag.beans.Rd | 2 man/besag.checks.Rd | 2 man/besag.elbatan.Rd | 4 man/besag.endive.Rd | 43 +-- man/besag.met.Rd | 220 +++++----------- man/besag.triticale.Rd | 57 +--- man/blackman.wheat.Rd | 2 man/bliss.borers.Rd | 4 man/bond.diallel.Rd | 39 ++ man/bose.multi.uniformity.Rd | 2 man/box.cork.Rd | 2 man/bradley.multi.uniformity.Rd | 4 man/brandt.switchback.Rd | 6 man/bridges.cucumber.Rd | 62 ---- man/broadbalk.wheat.Rd | 10 man/burgueno.alpha.Rd | 71 ++--- man/burgueno.rowcol.Rd | 42 +-- man/burgueno.unreplicated.Rd | 67 ++-- man/butron.maize.Rd | 115 ++------ man/byers.apple.Rd | 2 man/caribbean.maize.Rd | 2 man/carlson.germination.Rd | 2 man/carmer.density.Rd | 2 man/cate.potassium.Rd | 2 man/christidis.cotton.uniformity.Rd | 2 man/christidis.wheat.uniformity.Rd | 2 man/cleveland.soil.Rd | 4 man/cochran.beets.Rd | 2 man/cochran.crd.Rd | 2 man/cochran.lattice.Rd | 2 man/cochran.wireworms.Rd | 2 man/connolly.potato.Rd | 2 man/cornelius.maize.Rd | 2 man/correa.soybean.uniformity.Rd | 2 man/corsten.interaction.Rd | 2 man/cox.stripsplit.Rd | 2 man/crossa.wheat.Rd | 72 ++--- man/crowder.seeds.Rd | 82 +++--- man/cullis.earlygen.Rd | 60 ---- man/damesa.maize.Rd |only man/darwin.maize.Rd | 2 man/dasilva.maize.Rd | 2 man/day.wheat.uniformity.Rd | 2 man/denis.missing.Rd | 2 man/denis.ryegrass.Rd | 2 man/devries.pine.Rd | 2 man/digby.jointregression.Rd | 6 man/diggle.cow.Rd | 30 -- man/draper.safflower.uniformity.Rd | 2 man/durban.competition.Rd | 2 man/durban.rowcol.Rd | 14 - man/durban.splitplot.Rd | 45 +-- man/eden.nonnormal.Rd | 4 man/eden.potato.Rd | 2 man/edwards.oats.Rd | 2 man/federer.diagcheck.Rd | 55 ---- man/federer.tobacco.Rd | 2 man/fisher.barley.Rd | 56 +--- man/foulley.calving.Rd | 2 man/garber.multi.uniformity.Rd | 2 man/gartner.corn.Rd | 6 man/gathmann.bt.Rd | 2 man/gauch.soy.Rd | 2 man/george.wheat.Rd | 2 man/giles.wheat.Rd | 2 man/gilmour.serpentine.Rd | 138 +++------- man/gilmour.slatehall.Rd | 69 +---- man/gomez.wetdry.Rd | 2 man/gotway.hessianfly.Rd | 11 man/graybill.heteroskedastic.Rd | 2 man/gregory.cotton.Rd | 2 man/hanks.sprinkler.Rd | 6 man/hanover.whitepine.Rd | 47 +-- man/harris.multi.uniformity.Rd | 4 man/harville.lamb.Rd | 2 man/hayman.tobacco.Rd | 30 +- man/hazell.vegetables.Rd | 2 man/hessling.argentina.Rd | 2 man/hildebrand.systems.Rd | 83 ++---- man/holland.arthropods.Rd | 2 man/holtsmark.timothy.uniformity.Rd | 2 man/huehn.wheat.Rd | 2 man/hughes.grapes.Rd | 4 man/hunter.corn.Rd | 2 man/igue.sugarcane.uniformity.Rd | 2 man/ilri.sheep.Rd | 2 man/immer.sugarbeet.uniformity.Rd | 4 man/ivins.herbs.Rd | 6 man/jansen.apple.Rd | 2 man/jansen.carrot.Rd | 2 man/jansen.strawberry.Rd | 2 man/jayaraman.bamboo.Rd |only man/jenkyn.mildew.Rd | 2 man/john.alpha.Rd | 100 ++----- man/johnson.blight.Rd | 2 man/kalamkar.potato.uniformity.Rd | 2 man/kalamkar.wheat.uniformity.Rd | 25 - man/keen.potatodamage.Rd | 2 man/kempton.barley.uniformity.Rd | 33 +- man/kempton.competition.Rd | 7 man/kenward.cattle.Rd | 11 man/khin.rice.uniformity.Rd | 2 man/kiesselbach.oats.uniformity.Rd | 2 man/kristensen.barley.uniformity.Rd | 4 man/lambert.soiltemp.Rd | 4 man/lavoranti.eucalyptus.Rd | 2 man/lee.potatoblight.Rd | 6 man/lehner.soybeanmold.Rd | 2 man/li.millet.uniformity.Rd | 2 man/lillemo.wheat.Rd | 2 man/lin.superiority.Rd | 6 man/lin.unbalanced.Rd | 2 man/lonnquist.maize.Rd | 14 - man/love.cotton.uniformity.Rd | 2 man/lucas.switchback.Rd | 4 man/lyon.potato.uniformity.Rd | 2 man/masood.rice.uniformity.Rd | 2 man/mcclelland.corn.uniformity.Rd | 2 man/mcconway.turnip.Rd | 5 man/mcleod.barley.Rd | 2 man/mead.cauliflower.Rd | 2 man/mead.cowpeamaize.Rd | 2 man/mercer.mangold.uniformity.Rd | 4 man/mercer.wheat.uniformity.Rd | 6 man/miguez.biomass.Rd | 6 man/minnesota.barley.weather.Rd | 4 man/minnesota.barley.yield.Rd | 8 man/montgomery.wheat.uniformity.Rd | 2 man/nagai.strawberry.uniformity.Rd | 2 man/nair.turmeric.uniformity.Rd |only man/nass.corn.Rd | 2 man/nebraska.farmincome.Rd | 2 man/nonnecke.peas.uniformity.Rd | 4 man/nonnecke.sweetcorn.uniformity.Rd | 4 man/obsi.potato.uniformity.Rd | 2 man/odland.soy.uniformity.Rd | 2 man/onofri.winterwheat.Rd | 6 man/ortiz.tomato.Rd | 2 man/pacheco.soybean.Rd | 2 man/paez.coffee.uniformity.Rd | 2 man/parker.orange.uniformity.Rd | 2 man/patterson.switchback.Rd | 2 man/pearl.kernels.Rd | 2 man/perry.springwheat.Rd | 2 man/piepho.barley.uniformity.Rd | 16 - man/piepho.cocksfoot.Rd | 2 man/polson.safflower.uniformity.Rd | 2 man/ratkowsky.onions.Rd | 2 man/rothamsted.brussels.Rd | 2 man/rothamsted.oats.Rd | 4 man/ryder.groundnut.Rd | 28 -- man/salmon.bunt.Rd | 2 man/sawyer.multi.uniformity.Rd | 6 man/senshu.rice.Rd | 6 man/shafi.tomato.uniformity.Rd |only man/shafii.rapeseed.Rd | 4 man/silva.cotton.Rd | 10 man/sinclair.clover.Rd | 2 man/smith.beans.uniformity.Rd | 2 man/smith.corn.uniformity.Rd | 4 man/snedecor.asparagus.Rd | 170 +++--------- man/snijders.fusarium.Rd | 4 man/stephens.sorghum.uniformity.Rd | 2 man/steptoe.morex.pheno.Rd | 24 - man/streibig.competition.Rd | 4 man/strickland.apple.uniformity.Rd | 2 man/strickland.grape.uniformity.Rd | 4 man/strickland.peach.uniformity.Rd | 2 man/strickland.tomato.uniformity.Rd | 2 man/stroup.nin.Rd | 172 +++++------- man/stroup.splitplot.Rd | 4 man/student.barley.Rd | 2 man/tai.potato.Rd | 2 man/theobald.barley.Rd | 2 man/theobald.covariate.Rd | 2 man/thompson.cornsoy.Rd | 2 man/turner.herbicide.Rd | 2 man/urquhart.feedlot.Rd | 4 man/vaneeuwijk.drymatter.Rd | 6 man/vaneeuwijk.fusarium.Rd | 4 man/vaneeuwijk.nematodes.Rd | 4 man/vargas.wheat1.Rd | 2 man/vargas.wheat2.Rd | 2 man/verbyla.lupin.Rd | 6 man/vold.longterm.Rd | 2 man/vsn.lupin3.Rd | 2 man/wallace.iowaland.Rd | 4 man/walsh.cottonprice.Rd | 2 man/wassom.brome.uniformity.Rd | 2 man/waynick.soil.Rd | 2 man/wedderburn.barley.Rd | 2 man/weiss.incblock.Rd | 22 - man/weiss.lattice.Rd | 14 - man/wheatley.carrot.Rd | 2 man/wiebe.wheat.uniformity.Rd | 4 man/wiedemann.safflower.uniformity.Rd | 2 man/williams.barley.uniformity.Rd | 2 man/williams.cotton.uniformity.Rd | 2 man/williams.trees.Rd | 2 man/yan.winterwheat.Rd | 2 man/yang.barley.Rd | 10 man/yates.oats.Rd | 12 vignettes/agridat.bib | 2 vignettes/agridat_data.Rmd | 107 ++++--- vignettes/agridat_examples.Rmd | 451 +++++++++++++++++---------------- vignettes/agridat_intro.Rmd | 6 237 files changed, 2326 insertions(+), 2747 deletions(-)
Title: Write 'YAML' for 'R Markdown', 'bookdown', 'blogdown', and More
Description: Write 'YAML' front matter for R Markdown and related
documents. yml_*() functions write 'YAML' and use_*() functions let
you write the resulting 'YAML' to your clipboard or to .yml files
related to your project.
Author: Malcolm Barrett [aut, cre] (<https://orcid.org/0000-0003-0299-5825>),
Richard Iannone [aut] (<https://orcid.org/0000-0003-3925-190X>),
RStudio [cph, fnd]
Maintainer: Malcolm Barrett <malcolmbarrett@gmail.com>
Diff between ymlthis versions 0.1.2 dated 2020-02-03 and 0.1.3 dated 2021-01-12
DESCRIPTION | 8 MD5 | 50 +- NEWS.md | 3 R/yml_citations.R | 2 R/yml_distill.R | 9 R/yml_latex.R | 2 R/yml_pkgdown.R | 2 build/vignette.rds |binary inst/WORDLIST | 1 inst/doc/introduction-to-ymlthis.R | 2 inst/doc/introduction-to-ymlthis.Rmd | 2 inst/doc/introduction-to-ymlthis.html | 670 +++++++++++++++--------------- inst/doc/yaml-fieldguide.R | 3 inst/doc/yaml-fieldguide.Rmd | 3 inst/doc/yaml-fieldguide.html | 92 +++- inst/doc/yaml-overview.html | 130 +++-- man/pkgdown_template.Rd | 2 man/use_yml_defaults.Rd | 2 man/yml_distill_opts.Rd | 7 man/yml_latex_opts.Rd | 2 man/yml_params.Rd | 19 man/yml_reference.Rd | 2 man/yml_replace.Rd | 2 tests/testthat/test-rmarkdown_functions.R | 4 vignettes/introduction-to-ymlthis.Rmd | 2 vignettes/yaml-fieldguide.Rmd | 3 26 files changed, 560 insertions(+), 464 deletions(-)
Title: 'Htmlwidget' for 'Vega' and 'Vega-Lite'
Description: 'Vega' and 'Vega-Lite' parse text in 'JSON' notation to render
chart-specifications into 'HTML'. This package is used to facilitate the
rendering. It also provides a means to interact with signals, events,
and datasets in a 'Vega' chart using 'JavaScript' or 'Shiny'.
Author: Ian Lyttle [aut, cre] (<https://orcid.org/0000-0001-9962-4849>),
Vega/Vega-Lite Developers [aut],
Alicia Schep [ctb] (<https://orcid.org/0000-0002-3915-0618>),
Stuart Lee [ctb],
Kanit Wongsuphasawat [ctb] (Vega/Vega-Lite library),
Dominik Moritz [ctb] (Vega/Vega-Lite library),
Arvind Satyanarayan [ctb] (Vega/Vega-Lite library),
Jeffrey Heer [ctb] (Vega/Vega-Lite library),
Mike Bostock [ctb] (D3 library),
David Frank [ctb] (node-fetch library),
Hadley Wickham [ctb] (s3_register)
Maintainer: Ian Lyttle <ian.lyttle@se.com>
Diff between vegawidget versions 0.3.1 dated 2020-01-22 and 0.3.2 dated 2021-01-12
vegawidget-0.3.1/vegawidget/inst/schema/vega-lite/v4.0.2.json |only vegawidget-0.3.1/vegawidget/inst/schema/vega/v5.9.0.json |only vegawidget-0.3.1/vegawidget/tests/reference |only vegawidget-0.3.1/vegawidget/tests/spec |only vegawidget-0.3.2/vegawidget/DESCRIPTION | 31 vegawidget-0.3.2/vegawidget/MD5 | 131 vegawidget-0.3.2/vegawidget/NAMESPACE | 2 vegawidget-0.3.2/vegawidget/NEWS.md | 33 vegawidget-0.3.2/vegawidget/R/data.R | 2 vegawidget-0.3.2/vegawidget/R/js-handler-internal.R | 1 vegawidget-0.3.2/vegawidget/R/js-handler.R | 9 vegawidget-0.3.2/vegawidget/R/js-listener.R | 7 vegawidget-0.3.2/vegawidget/R/set-base-url.R |only vegawidget-0.3.2/vegawidget/R/sysdata.rda |binary vegawidget-0.3.2/vegawidget/R/to-image.R | 5 vegawidget-0.3.2/vegawidget/R/use-vegawidget.R | 35 vegawidget-0.3.2/vegawidget/R/utils-javascript.R | 5 vegawidget-0.3.2/vegawidget/R/utils-vegaspec.R | 9 vegawidget-0.3.2/vegawidget/R/vega-embed.R | 225 - vegawidget-0.3.2/vegawidget/R/vegaspec.R | 7 vegawidget-0.3.2/vegawidget/R/vegawidget.R | 35 vegawidget-0.3.2/vegawidget/R/zzz.R |only vegawidget-0.3.2/vegawidget/README.md | 119 vegawidget-0.3.2/vegawidget/build/vignette.rds |binary vegawidget-0.3.2/vegawidget/data/data_category.rda |binary vegawidget-0.3.2/vegawidget/data/data_seattle_daily.rda |binary vegawidget-0.3.2/vegawidget/data/data_seattle_hourly.rda |binary vegawidget-0.3.2/vegawidget/data/spec_mtcars.rda |binary vegawidget-0.3.2/vegawidget/inst/doc/vegawidget.R |only vegawidget-0.3.2/vegawidget/inst/doc/vegawidget.Rmd | 49 vegawidget-0.3.2/vegawidget/inst/doc/vegawidget.html | 2019 ---------- vegawidget-0.3.2/vegawidget/inst/htmlwidgets/lib/vega-embed/vega-embed.js | 47 vegawidget-0.3.2/vegawidget/inst/htmlwidgets/lib/vega-lite/LICENSE | 16 vegawidget-0.3.2/vegawidget/inst/htmlwidgets/lib/vega-lite/vega-lite.min.js | 17 vegawidget-0.3.2/vegawidget/inst/htmlwidgets/lib/vega/vega.min.js | 3 vegawidget-0.3.2/vegawidget/inst/htmlwidgets/vegawidget.yaml | 6 vegawidget-0.3.2/vegawidget/inst/schema/vega-lite/v4.17.0.json |only vegawidget-0.3.2/vegawidget/inst/schema/vega/v5.17.0.json |only vegawidget-0.3.2/vegawidget/inst/templates/utils-vegawidget.R | 21 vegawidget-0.3.2/vegawidget/man/add-listeners.Rd | 7 vegawidget-0.3.2/vegawidget/man/as_vegaspec.Rd | 4 vegawidget-0.3.2/vegawidget/man/data_category.Rd | 6 vegawidget-0.3.2/vegawidget/man/data_seattle_daily.Rd | 6 vegawidget-0.3.2/vegawidget/man/data_seattle_hourly.Rd | 8 vegawidget-0.3.2/vegawidget/man/figures/README-vegawidget-1.svg | 2 vegawidget-0.3.2/vegawidget/man/s3_register.Rd |only vegawidget-0.3.2/vegawidget/man/spec_mtcars.Rd | 4 vegawidget-0.3.2/vegawidget/man/use_vegawidget.Rd | 15 vegawidget-0.3.2/vegawidget/man/vega_embed.Rd | 122 vegawidget-0.3.2/vegawidget/man/vegawidget.Rd | 7 vegawidget-0.3.2/vegawidget/man/vw_handler_signal.Rd | 9 vegawidget-0.3.2/vegawidget/man/vw_set_base_url.Rd |only vegawidget-0.3.2/vegawidget/tests/testthat/_snaps |only vegawidget-0.3.2/vegawidget/tests/testthat/test-assert-packages.R | 2 vegawidget-0.3.2/vegawidget/tests/testthat/test-autosize.R | 2 vegawidget-0.3.2/vegawidget/tests/testthat/test-handlers.R | 8 vegawidget-0.3.2/vegawidget/tests/testthat/test-rename-datasets.R | 3 vegawidget-0.3.2/vegawidget/tests/testthat/test-rlang-check.R |only vegawidget-0.3.2/vegawidget/tests/testthat/test-serialize-data.R | 2 vegawidget-0.3.2/vegawidget/tests/testthat/test-set-base-url.R |only vegawidget-0.3.2/vegawidget/tests/testthat/test-spec-version.R | 2 vegawidget-0.3.2/vegawidget/tests/testthat/test-to-image.R | 15 vegawidget-0.3.2/vegawidget/tests/testthat/test-to-vega.R | 14 vegawidget-0.3.2/vegawidget/tests/testthat/test-vega-embed.R | 24 vegawidget-0.3.2/vegawidget/tests/testthat/test-vega-version.R | 2 vegawidget-0.3.2/vegawidget/tests/testthat/test-vegaspec.R | 42 vegawidget-0.3.2/vegawidget/vignettes/articles/dates-times.Rmd | 3 vegawidget-0.3.2/vegawidget/vignettes/articles/image.Rmd | 36 vegawidget-0.3.2/vegawidget/vignettes/articles/import.Rmd | 42 vegawidget-0.3.2/vegawidget/vignettes/articles/javascript.Rmd | 37 vegawidget-0.3.2/vegawidget/vignettes/articles/render-vegawidget.Rmd | 28 vegawidget-0.3.2/vegawidget/vignettes/freeny.svg |only vegawidget-0.3.2/vegawidget/vignettes/mtcars.svg |only vegawidget-0.3.2/vegawidget/vignettes/vegawidget.Rmd | 49 74 files changed, 773 insertions(+), 2562 deletions(-)
Title: Automated Backtesting of Portfolios over Multiple Datasets
Description: Automated backtesting of multiple portfolios over multiple
datasets of stock prices in a rolling-window fashion. Intended for
researchers and practitioners to backtest a set of different portfolios,
as well as by a course instructor to assess the students in their portfolio
design in a fully automated and convenient manner, with results conveniently
formatted in tables and plots. Each portfolio design is easily defined as a
function that takes as input a window of the stock prices and outputs the
portfolio weights. Multiple portfolios can be easily specified as a list
of functions or as files in a folder. Multiple datasets can be conveniently
extracted randomly from different markets, different time periods, and
different subsets of the stock universe. The results can be later assessed
and ranked with tables based on a number of performance criteria (e.g.,
expected return, volatility, Sharpe ratio, drawdown, turnover rate, return
on investment, computational time, etc.), as well as plotted in a number of
ways with nice barplots and boxplots.
Author: Daniel P. Palomar [cre, aut],
Rui Zhou [aut]
Maintainer: Daniel P. Palomar <daniel.p.palomar@gmail.com>
Diff between portfolioBacktest versions 0.2.2 dated 2020-08-03 and 0.2.3 dated 2021-01-12
DESCRIPTION | 14 - MD5 | 64 +++--- NAMESPACE | 15 - NEWS.md | 15 + R/backtestLeaderboard.R | 27 +- R/backtestSummary.R | 108 ++++------- R/benchmarkPortfolios.R | 47 ++++ R/plotsNtables.R | 11 - R/portfolioBacktest-package.R | 2 R/portfolioBacktest.R | 254 +++++++++++++------------- R/stockDataDownload.R | 88 +++++---- R/zzz.R |only README.md | 25 +- build/vignette.rds |binary inst/CITATION | 8 inst/doc/PortfolioBacktest.html | 307 +++++++++++++++++++------------- man/backtestLeaderboard.Rd | 3 man/backtestSelector.Rd | 2 man/backtestSummary.Rd | 5 man/backtestTable.Rd | 4 man/financialDataResample.Rd |only man/portfolioBacktest-package.Rd | 2 man/portfolioBacktest.Rd | 33 ++- man/stockDataDownload.Rd | 2 man/stockDataResample.Rd | 42 ---- man/summaryTable.Rd | 3 tests/testthat/bt_summary_check.RData |binary tests/testthat/bt_table_check.RData |binary tests/testthat/test-errorControl.R | 38 +-- tests/testthat/test-plotsNtables.R | 6 tests/testthat/test-portfolioBacktest.R | 17 - vignettes/portfolio_files/0001.R | 2 vignettes/portfolio_files/0002.R | 2 vignettes/portfolio_files/0003.R | 2 34 files changed, 644 insertions(+), 504 deletions(-)
More information about portfolioBacktest at CRAN
Permanent link
Title: Joint Mean-Covariance Models using 'Armadillo' and S4
Description: Fit joint mean-covariance models for longitudinal data. The models
and their components are represented using S4 classes and methods. The core
computational algorithms are implemented using the 'Armadillo' C++ library
for numerical linear algebra and 'RcppArmadillo' glue.
Author: Jianxin Pan [aut, cre],
Yi Pan [aut]
Maintainer: Jianxin Pan <Jianxin.Pan@manchester.ac.uk>
Diff between jmcm versions 0.2.3 dated 2021-01-06 and 0.2.4 dated 2021-01-12
jmcm-0.2.3/jmcm/src/arma_util.cpp |only jmcm-0.2.3/jmcm/src/arma_util.h |only jmcm-0.2.4/jmcm/DESCRIPTION | 8 jmcm-0.2.4/jmcm/MD5 | 22 - jmcm-0.2.4/jmcm/inst/NEWS.Rd | 13 jmcm-0.2.4/jmcm/src/acd.h | 559 +++++--------------------------- jmcm-0.2.4/jmcm/src/bfgs.h | 3 jmcm-0.2.4/jmcm/src/external.cpp | 4 jmcm-0.2.4/jmcm/src/hpc.h | 655 ++++++-------------------------------- jmcm-0.2.4/jmcm/src/jmcm_base.h | 374 +++++++++++++++------ jmcm-0.2.4/jmcm/src/jmcm_fit.h | 3 jmcm-0.2.4/jmcm/src/linesearch.h | 4 jmcm-0.2.4/jmcm/src/mcd.h | 521 ++++-------------------------- 13 files changed, 592 insertions(+), 1574 deletions(-)
Title: Geometric Morphometric Analyses of 2D/3D Landmark Data
Description: Read, manipulate, and digitize landmark data, generate shape
variables via Procrustes analysis for points, curves and surfaces, perform
shape analyses, and provide graphical depictions of shapes and patterns of
shape variation.
Author: Dean Adams [aut, cre],
Michael Collyer [aut],
Antigoni Kaliontzopoulou [aut],
Erica Baken [aut]
Maintainer: Dean Adams <dcadams@iastate.edu>
Diff between geomorph versions 3.3.1 dated 2020-06-12 and 3.3.2 dated 2021-01-12
DESCRIPTION | 14 MD5 | 196 ++--- NAMESPACE | 2 NEWS.md | 1360 +++++++++++++++++++------------------- R/arrayspecs.r | 39 - R/bilat.symmetry.r | 33 R/build.template.r | 17 R/combine.subsets.R | 32 R/compare.CR.R | 62 + R/compare.evol.rates.r | 22 R/compare.multi.evol.rates.r | 17 R/compare.pls.r | 12 R/define.links.r | 2 R/define.modules.r | 2 R/define.sliders.r | 10 R/deprecated.defunct.r | 14 R/digit.fixed.r | 10 R/digitsurface.r | 4 R/fixed.angle.r | 3 R/geomorph.data.frame.r | 5 R/geomorph.support.code.r | 408 ----------- R/geomorph.utils.r | 149 ++-- R/gm.prcomp.R | 30 R/gpagen.r | 17 R/gridPar.r | 29 R/integration.test.r | 199 ++++- R/modularity.test.r | 15 R/morphol.disparity.r | 7 R/phylo.integration.r | 272 +++++-- R/phylo.modularity.r | 115 +-- R/physignal.r | 21 R/picknplot.shape.r | 19 R/plotAllSpecimens.r | 2 R/plotAllometry.r | 37 - R/plotGMPhyloMorphoSpace.r | 8 R/plotOutliers.r | 10 R/plotRefToTarget.r | 36 - R/plotTangentSpace.r | 10 R/plotspec.r | 7 R/procD.lm.r | 26 R/procD.pgls.r | 11 R/read.ply.r | 3 R/readland.nts.r | 58 + R/readland.shapes.r | 15 R/readmulti.nts.r | 104 +- R/shape.predictor.r | 35 R/shared.support.code.R | 135 +++ R/two.b.pls.r | 75 +- R/warpRefMesh.r | 3 build/vignette.rds |binary inst/CITATION | 15 inst/doc/geomorph.PCA.html | 151 ++-- inst/doc/geomorph.assistance.html | 349 +++++---- inst/doc/geomorph.digitize3D.html | 79 +- inst/doc/geomorph.functions.html | 30 man/arrayspecs.Rd | 39 - man/bilat.symmetry.Rd | 28 man/buildtemplate.Rd | 17 man/combine.subsets.Rd | 32 man/compare.CR.Rd | 56 - man/compare.evol.rates.Rd | 3 man/compare.multi.evol.rates.Rd | 9 man/compare.pls.Rd | 12 man/define.modules.Rd | 2 man/define.sliders.Rd | 5 man/digit.fixed.Rd | 4 man/digitsurface.Rd | 4 man/fixed.angle.Rd | 3 man/geomorph-package.Rd | 2 man/geomorph.data.frame.Rd | 3 man/gm.prcomp.Rd | 28 man/gpagen.Rd | 17 man/gridPar.Rd | 29 man/integration.test.Rd | 10 man/lizards.Rd | 2 man/modularity.test.Rd | 6 man/morphol.disparity.Rd | 5 man/phylo.integration.Rd | 14 man/phylo.modularity.Rd | 10 man/physignal.Rd | 17 man/picknplot.shape.Rd | 19 man/plethspecies.Rd | 4 man/plot.gm.prcomp.Rd | 13 man/plotAllSpecimens.Rd | 2 man/plotAllometry.Rd | 35 man/plotGMPhyloMorphoSpace.Rd | 18 man/plotOutliers.Rd | 10 man/plotRefToTarget.Rd | 18 man/plotTangentSpace.Rd | 17 man/plotspec.Rd | 7 man/print.compare.CR.Rd |only man/procD.lm.Rd | 26 man/procD.pgls.Rd | 9 man/read.ply.Rd | 3 man/readland.shapes.Rd | 15 man/readmulti.nts.Rd | 36 - man/shape.predictor.Rd | 30 man/summary.compare.CR.Rd |only man/two.b.pls.Rd | 8 vignettes/figs/tree.plot.png |binary 100 files changed, 2683 insertions(+), 2280 deletions(-)
Title: Utilities for Working with NEON Data
Description: NEON data packages can be accessed through the NEON Data Portal <https://data.neonscience.org/home>
or through the NEON Data API (see <https://data.neonscience.org/data-api> for documentation). Data delivered from
the Data Portal are provided as monthly zip files packaged within a parent zip file, while individual files
can be accessed from the API. This package provides tools that aid in discovering, downloading, and reformatting
data prior to use in analyses. This includes downloading data via the API, merging data tables by type, and
converting formats. For more information, see the readme file at <https://github.com/NEONScience/NEON-utilities>.
Author: Claire Lunch [aut, cre, ctb],
Christine Laney [aut, ctb],
Nathan Mietkiewicz [aut, ctb],
Eric Sokol [aut, ctb],
Kaelin Cawley [aut, ctb],
NEON (National Ecological Observatory Network) [aut]
Maintainer: Claire Lunch <clunch@battelleecology.org>
Diff between neonUtilities versions 1.3.8 dated 2020-11-11 and 1.3.9 dated 2021-01-12
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- R/getAPI.R | 22 ++++++++++++++++++---- R/getAvg.R | 5 +++++ R/getDatatable.R | 6 ++++++ R/getProductInfo.R | 5 +++++ R/getTaxonTable.R | 17 ++++++++++++----- R/stackEddy.R | 1 + R/stackFromStore.R | 2 +- README.md | 11 +++++++++-- 10 files changed, 70 insertions(+), 25 deletions(-)
Title: Multiple Locus Association Mapping on a Genome-Wide Scale
Description: An implementation of multiple-locus association mapping on a genome-wide scale. 'Eagle' can handle inbred and outbred study populations, populations of arbitrary unknown complexity, and data larger than the memory capacity of the computer. Since 'Eagle' is based on linear mixed models, it is best suited to the analysis of data on continuous traits. However, it can tolerate non-normal data. 'Eagle' reports, as its findings, the best set of snp in strongest association with a trait. For users unfamiliar with R, to perform an analysis, run 'OpenGUI()'. This opens a web browser to the menu-driven user interface for the input of data, and for performing genome-wide analysis.
Author: Andrew George [aut, cre],
Joshua Bowden [ctb],
Ryan Stephenson [ctb],
Hyun Kang [ctb],
Noah Zaitlen [ctb],
Claire Wade [ctb],
Andrew Kirby [ctb],
David Heckerman [ctb],
Mark Daly [ctb],
Eleazar Eskin [ctb]
Maintainer: Andrew George <andrew.george@csiro.au>
Diff between Eagle versions 2.4.2 dated 2020-12-06 and 2.4.3 dated 2021-01-12
Eagle-2.4.2/Eagle/inst/doc/article.Rnw |only Eagle-2.4.2/Eagle/inst/doc/article.pdf |only Eagle-2.4.2/Eagle/vignettes/article.Rnw |only Eagle-2.4.3/Eagle/DESCRIPTION | 10 +++++----- Eagle-2.4.3/Eagle/MD5 | 21 +++++++++++---------- Eagle-2.4.3/Eagle/NEWS | 6 ++++++ Eagle-2.4.3/Eagle/R/PlotAM.R | 3 +-- Eagle-2.4.3/Eagle/R/onAttach.R | 2 +- Eagle-2.4.3/Eagle/R/print_title.R | 2 +- Eagle-2.4.3/Eagle/build/vignette.rds |binary Eagle-2.4.3/Eagle/inst/doc/Eagle_vignette.Rnw |only Eagle-2.4.3/Eagle/inst/doc/Eagle_vignette.pdf |only Eagle-2.4.3/Eagle/inst/shiny_app/app.R | 16 ++++++++-------- Eagle-2.4.3/Eagle/vignettes/Eagle_vignette.Rnw |only Eagle-2.4.3/Eagle/vignettes/jsslogo.jpg |only 15 files changed, 33 insertions(+), 27 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-23 1.1.0
2020-01-21 1.0.0
2019-04-02 0.2.1
2019-03-29 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-06-30 0.9
2016-10-18 0.8
2016-09-16 0.7
2016-03-12 0.6
2014-09-16 0.5
2014-06-13 0.4
2014-02-20 0.3
2014-02-17 0.2
2013-05-07 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-12-18 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-28 2.0.0
2014-04-03 1.1.1
2014-02-25 1.1.0
2012-07-16 1.0.5
2011-06-03 1.0.4
2011-06-01 1.0.3
2010-12-15 1.0.1
2010-05-03 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-29 1.6
2017-02-08 1.5
2015-02-22 1.4
2014-09-02 1.2
2014-07-29 1.1
2014-07-24 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-28 3.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-12-17 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-06 1.0.2
2021-01-04 1.0.1
2020-12-18 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-06 1.3.1
2020-03-11 1.3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-12-16 1.6.0
2020-09-10 1.5.3
2020-07-24 1.5.2
2020-07-07 1.5.1
2020-02-20 1.4.3
2020-01-20 1.4.2
2019-06-21 1.4.1
2019-02-28 1.3.0
2018-11-21 1.2.3
2018-09-10 1.2.2
2018-06-13 1.2.0
2018-01-03 1.1.1
2017-09-25 1.1.0
2017-06-30 1.0.1
Title: Analyze and Create Elegant Directed Acyclic Graphs
Description: Tidy, analyze, and plot directed acyclic graphs
(DAGs). 'ggdag' is built on top of 'dagitty', an R package that uses
the 'DAGitty' web tool (<http://dagitty.net>) for creating and
analyzing DAGs. 'ggdag' makes it easy to tidy and plot 'dagitty'
objects using 'ggplot2' and 'ggraph', as well as common analytic and
graphical functions, such as determining adjustment sets and node
relationships.
Author: Malcolm Barrett [aut, cre] (<https://orcid.org/0000-0003-0299-5825>)
Maintainer: Malcolm Barrett <malcolmbarrett@gmail.com>
Diff between ggdag versions 0.2.2 dated 2020-02-13 and 0.2.3 dated 2021-01-12
DESCRIPTION | 8 MD5 | 96 + NEWS.md | 6 R/colliders.R | 47 R/equivalence.R | 31 R/geom_dag.R | 1 R/utils.R | 13 build/vignette.rds |binary inst/doc/bias-structures.Rmd | 2 inst/doc/bias-structures.html | 490 +++------- inst/doc/intro-to-dags.Rmd | 4 inst/doc/intro-to-dags.html | 326 +----- inst/doc/intro-to-ggdag.Rmd | 2 inst/doc/intro-to-ggdag.html | 482 +++------ man/as.tbl.tidy_daggity.Rd | 2 man/as_tbl_graph.Rd | 2 man/d_relationship.Rd | 2 man/equivalent.Rd | 6 man/geom_dag_edge_functions.Rd | 4 man/geom_dag_text.Rd | 13 man/repel.Rd | 9 man/theme_dag_blank.Rd | 2 man/theme_dag_grey.Rd | 2 man/tidy_dagitty.Rd | 2 man/variable_family.Rd | 2 tests/figs/deps.txt | 2 tests/figs/ggdag-equivalent-dags/ggdag-equivalent-class-plots-labels.svg |only tests/figs/ggrepel-extensions/geom-dag-label-repel-repels-labels.svg | 15 tests/figs/ggrepel-extensions/geom-dag-text-repel-repels-names.svg | 9 tests/testthat/helper-load_dag.R | 4 tests/testthat/helper-vdiffr.R |only tests/testthat/test-adjustment_sets.R | 4 tests/testthat/test-canonical.R | 6 tests/testthat/test-colliders.R | 32 tests/testthat/test-dagify.R | 6 tests/testthat/test-drelationship.R | 22 tests/testthat/test-equivalence.R | 40 tests/testthat/test-exogenous.R | 8 tests/testthat/test-geom_dag.R | 12 tests/testthat/test-ggdag.R | 8 tests/testthat/test-instrumental.R | 2 tests/testthat/test-paths.R | 4 tests/testthat/test-quick_plots.R | 8 tests/testthat/test-relations.R | 8 tests/testthat/test-simulate_data.R | 2 tests/testthat/test-status.R | 6 tests/testthat/test-themes.R | 10 vignettes/bias-structures.Rmd | 2 vignettes/intro-to-dags.Rmd | 4 vignettes/intro-to-ggdag.Rmd | 2 50 files changed, 666 insertions(+), 1104 deletions(-)
Title: Binary Expansion Testing
Description: Nonparametric detection of nonuniformity and dependence with Binary Expansion Testing (BET). See Kai Zhang (2019) BET on Independence, Journal of the American Statistical Association, 114:528, 1620-1637, <DOI:10.1080/01621459.2018.1537921> and Zhigen Zhao, Michael Baiocchi, Kai Zhang. SorBET: A Fast and Powerful Algorithm to Test Dependence of Variables.
Author: Wan Zhang [aut, cre],
Zhigen Zhao [aut],
Michael Baiocchi [aut],
Kai Zhang [aut]
Maintainer: Wan Zhang <wanz63@live.unc.edu>
Diff between BET versions 0.2.0 dated 2020-11-18 and 0.3.0 dated 2021-01-12
BET-0.2.0/BET/src/BET2nd.cpp |only BET-0.3.0/BET/DESCRIPTION | 6 +-- BET-0.3.0/BET/MD5 | 22 +++++++------ BET-0.3.0/BET/NAMESPACE | 1 BET-0.3.0/BET/R/RcppExports.R | 12 ++++--- BET-0.3.0/BET/R/plot.R | 61 ++++++++++++++++++++++++++++++++------ BET-0.3.0/BET/build |only BET-0.3.0/BET/man/BET.Rd | 20 +++++++++++- BET-0.3.0/BET/man/BET_package.Rd | 43 +++++++++++++------------- BET-0.3.0/BET/man/BETs.Rd | 20 +++++++++++- BET-0.3.0/BET/man/Beast.Rd |only BET-0.3.0/BET/src/BET.h | 45 +++++++++++++++++++++++----- BET-0.3.0/BET/src/BET3.cpp |only BET-0.3.0/BET/src/RcppExports.cpp | 43 +++++++++++++++++++++----- 14 files changed, 207 insertions(+), 66 deletions(-)