Title: Loading Screen for 'Shiny'
Description: Full screen and partial loading screens for 'Shiny' with spinners, progress bars, and notifications.
Author: John Coene [aut, cre],
Jinhwan Kim [ctb],
Victor Granda [ctb] (<https://orcid.org/0000-0002-0469-1991>)
Maintainer: John Coene <jcoenep@gmail.com>
Diff between waiter versions 0.1.3 dated 2020-09-13 and 0.2.0 dated 2021-01-14
waiter-0.1.3/waiter/R/butler.R |only waiter-0.1.3/waiter/inst/assets/waiter/please-wait.css |only waiter-0.1.3/waiter/inst/assets/waiter/please-wait.min.js |only waiter-0.1.3/waiter/inst/waiter |only waiter-0.1.3/waiter/inst/waitress |only waiter-0.1.3/waiter/man/butler.Rd |only waiter-0.1.3/waiter/man/butlerClass.Rd |only waiter-0.2.0/waiter/DESCRIPTION | 20 +- waiter-0.2.0/waiter/MD5 | 52 ++--- waiter-0.2.0/waiter/NAMESPACE | 15 - waiter-0.2.0/waiter/NEWS.md | 22 ++ waiter-0.2.0/waiter/R/garcon.R | 9 waiter-0.2.0/waiter/R/hostess.R | 84 +++----- waiter-0.2.0/waiter/R/spinners.R | 12 - waiter-0.2.0/waiter/R/waiter.R | 140 ++------------ waiter-0.2.0/waiter/R/waitress.R | 46 ---- waiter-0.2.0/waiter/R/zzz.R | 16 - waiter-0.2.0/waiter/README.md | 5 waiter-0.2.0/waiter/inst/assets/hostess/custom.js | 41 ++++ waiter-0.2.0/waiter/inst/assets/waiter/custom.js | 35 +-- waiter-0.2.0/waiter/inst/assets/waiter/waiter.css |only waiter-0.2.0/waiter/inst/assets/waiter/waiter.js | 47 +++- waiter-0.2.0/waiter/inst/assets/waitress/custom.js | 7 waiter-0.2.0/waiter/inst/doc/introduction.html | 10 + waiter-0.2.0/waiter/man/garcon.Rd | 28 -- waiter-0.2.0/waiter/man/hostess.Rd | 49 +++- waiter-0.2.0/waiter/man/hostessLoader.Rd | 5 waiter-0.2.0/waiter/man/spinners.Rd | 5 waiter-0.2.0/waiter/man/waiter.Rd | 25 -- waiter-0.2.0/waiter/man/waitress.Rd | 23 -- waiter-0.2.0/waiter/man/waitressClass.Rd | 37 --- 31 files changed, 258 insertions(+), 475 deletions(-)
Title: UK Flood Estimation
Description: Functions to implement the methods of the Flood Estimation Handbook (FEH), associated updates and the revitalised flood hydrograph model (ReFH). Currently the packages uses NRFA peak flow dataset version 9. Aside from FEH functionality, further hydrological functions are available. Most of the methods implemented in this package are described in one or more of the following: "Flood Estimation Handbook", Centre for Ecology & Hydrology (1999, ISBN:0 948540 94 X). "Flood Estimation Handbook Supplementary Report No. 1", Kjeldsen (2007, ISBN:0 903741 15 7). "Regional Frequency Analysis - an approach based on L-moments", Hosking & Wallis (1997, ISBN: 978 0 521 01940 8). "Proposal of the ‘extreme rank plot’ for extreme value analysis: with an emphasis on flood frequency studies", Hammond (2019, <doi:10.2166/nh.2019.157>). "Making better use of local data in flood frequency estimation", Environment Agency (2017, ISBN: 978 1 84911 387 8). "Improving the FEH statistical procedures for flood frequency estimation", Environment Agency (2008, ISBN: 978 1 84432 920 5). "Low flow estimation in the United Kingdom", Institute of Hydrology (1992, ISBN 0 948540 45 1). Wallingford HydroSolutions, (2016, <http://software.hydrosolutions.co.uk/winfap4/Urban-Adjustment-Procedure-Technical-Note.pdf>). Data from the UK National River Flow Archive (<https://nrfa.ceh.ac.uk/>, terms and conditions: <https://nrfa.ceh.ac.uk/costs-terms-and-conditions>.
Author: Anthony Hammond
Maintainer: Anthony Hammond <agqhammond@gmail.com>
Diff between UKFE versions 0.1.2 dated 2020-12-05 and 0.1.3 dated 2021-01-14
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- R/All.R | 10 +++++----- man/LSkewUrb.Rd | 2 +- man/LcvUrb.Rd | 2 +- man/PoolEst.Rd | 2 +- man/QMED.Rd | 2 +- man/QMEDLink.Rd | 2 +- 8 files changed, 20 insertions(+), 20 deletions(-)
Title: Reports from Trello in R
Description: Creates reports from Trello, a collaborative, project organization
and list-making application. <https://trello.com/>
Reports are created by comparing individual Trello board
cards from two different points in time and documenting any changes made
to the cards.
Author: Andrew Guide [aut, cre],
Thomas Stewart [aut]
Maintainer: Andrew Guide <andrew.guide@vumc.org>
Diff between repello versions 1.0.0 dated 2020-11-09 and 1.0.1 dated 2021-01-14
repello-1.0.0/repello/R/set_token.R |only repello-1.0.0/repello/man/set_token.Rd |only repello-1.0.0/repello/vignettes/user_token.txt |only repello-1.0.1/repello/DESCRIPTION | 6 +- repello-1.0.1/repello/MD5 | 37 ++++++-------- repello-1.0.1/repello/NAMESPACE | 2 repello-1.0.1/repello/R/all_checklists.R | 19 +++---- repello-1.0.1/repello/R/cards_info.R | 18 +++--- repello-1.0.1/repello/R/get_board_id.R | 16 ++---- repello-1.0.1/repello/R/get_checklist.R | 17 +++--- repello-1.0.1/repello/R/set_key_token.R |only repello-1.0.1/repello/R/trello_updates.R | 23 ++++---- repello-1.0.1/repello/inst/doc/r-reports-from-trello.R | 4 + repello-1.0.1/repello/inst/doc/r-reports-from-trello.Rmd | 14 +++-- repello-1.0.1/repello/inst/doc/r-reports-from-trello.html | 6 +- repello-1.0.1/repello/man/all_checklists.Rd | 4 - repello-1.0.1/repello/man/cards_info.Rd | 4 - repello-1.0.1/repello/man/get_board_id.Rd | 4 - repello-1.0.1/repello/man/get_checklist.Rd | 4 - repello-1.0.1/repello/man/set_key_token.Rd |only repello-1.0.1/repello/man/trello_updates.Rd | 10 --- repello-1.0.1/repello/vignettes/r-reports-from-trello.Rmd | 14 +++-- 22 files changed, 95 insertions(+), 107 deletions(-)
Title: 'NoSQL' Database Connector
Description: Simplified document database manipulation and analysis,
including support for many 'NoSQL' databases, including document
databases ('Elasticsearch', 'CouchDB', 'MongoDB'),
'key-value' databases ('Redis'), and (with limitations)
SQLite/json1.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
Rich FitzJohn [aut],
Jeroen Ooms [aut],
Ralf Herold [aut] (<https://orcid.org/0000-0002-8148-6748>)
Maintainer: Scott Chamberlain <sckott@protonmail.com>
Diff between nodbi versions 0.4.0 dated 2019-11-11 and 0.4.2 dated 2021-01-14
nodbi-0.4.0/nodbi/README.md |only nodbi-0.4.2/nodbi/DESCRIPTION | 11 ++++---- nodbi-0.4.2/nodbi/LICENSE | 4 +-- nodbi-0.4.2/nodbi/MD5 | 31 +++++++++++------------- nodbi-0.4.2/nodbi/NEWS.md | 7 +++++ nodbi-0.4.2/nodbi/R/src.R | 10 +++---- nodbi-0.4.2/nodbi/R/src_couchdb.R | 13 +++++----- nodbi-0.4.2/nodbi/man/contacts.Rd | 4 ++- nodbi-0.4.2/nodbi/man/diamonds.Rd | 6 +++- nodbi-0.4.2/nodbi/man/docdb_query.Rd | 2 - nodbi-0.4.2/nodbi/man/nodbi-defunct.Rd | 2 - nodbi-0.4.2/nodbi/man/src.Rd | 12 ++++----- nodbi-0.4.2/nodbi/man/src_couchdb.Rd | 11 ++++++-- nodbi-0.4.2/nodbi/man/src_elastic.Rd | 13 +++++++--- nodbi-0.4.2/nodbi/man/src_mongo.Rd | 3 -- nodbi-0.4.2/nodbi/tests/testthat/helper-nodbi.R | 6 +++- nodbi-0.4.2/nodbi/tests/testthat/test-couchdb.R | 13 ++++++---- 17 files changed, 90 insertions(+), 58 deletions(-)
Title: (Non)Additive Genetic Relatedness Matrices
Description: Constructs (non)additive genetic relationship matrices, and their
inverses, from a pedigree to be used in linear mixed effect models (A.K.A.
the 'animal model'). Also includes other functions to facilitate the use of
animal models. Some functions have been created to be used in conjunction
with the R package 'asreml' for the 'ASReml' software, which can be
obtained upon purchase from 'VSN' international
(<https://www.vsni.co.uk/software/asreml>).
Author: Matthew Wolak [cre, aut]
Maintainer: Matthew Wolak <matthewwolak@gmail.com>
Diff between nadiv versions 2.16.2.0 dated 2019-10-20 and 2.17.0 dated 2021-01-14
DESCRIPTION | 14 +-- MD5 | 101 ++++++++++++----------- NAMESPACE | 5 + NEWS.md | 22 ++++- R/ggcontrib.R | 64 +++++++-------- R/makeA.R | 12 +- R/makeAinv.R | 7 + R/makeD.R | 22 ++--- R/makeDomEpi.R | 5 - R/makeDsim.R | 41 ++++----- R/makeDufam.R | 22 ++--- R/makeMinv.R |only R/makeS.R | 4 R/makeSd.R | 18 +--- R/makeSdsim.R | 10 +- R/makeTinvDF.R | 92 +++++++++++++++++++-- R/nadiv-datasets.R | 35 ++------ R/nadiv.R | 9 -- R/numPed.R | 20 ++-- R/prepPed.R | 80 +++++++++++++----- R/simPed.R | 216 ++++++++++++++++++++++++++++++++++++++++++++++++++- R/sm2list.R | 2 README.md | 6 - inst/CITATION | 2 man/F2009.Rd | 26 ++---- man/FG90.Rd | 23 ++--- man/Mrode2.Rd | 19 ++-- man/Mrode3.Rd | 25 ++--- man/Mrode9.Rd | 11 ++ man/Q1988.Rd | 25 ++--- man/findDFC.Rd | 8 + man/geneDrop.Rd | 27 ++++-- man/ggTutorial.Rd | 6 - man/grfx.Rd | 11 ++ man/makeAinv.Rd | 33 ++++++- man/makeD.Rd | 24 ++++- man/makeDomEpi.Rd | 9 +- man/makeDsim.Rd | 59 ++++++++----- man/makeMinv.Rd |only man/makeS.Rd | 8 + man/makeTinv.Rd | 13 ++- man/nadiv-package.Rd | 14 --- man/prepPed.Rd | 1 man/proLik.Rd | 27 +++++- man/simGG.Rd | 24 ++++- man/simPedHS.Rd | 2 man/simPedMCN.Rd |only man/sm2list.Rd | 2 man/warcolak.Rd | 56 ++++++------- src/Trow.cc |only src/fcoeff.cc | 81 +++++++++---------- src/ga.cc | 68 +++++++++++----- src/minv.cc |only src/nadiv.h | 79 ------------------ 54 files changed, 947 insertions(+), 543 deletions(-)
Title: Comprehensive TIFF I/O with Full Support for 'ImageJ' TIFF Files
Description: General purpose TIFF file I/O for R users.
Currently the only such package with read and write support for TIFF
files with floating point (real-numbered) pixels, and the only package
that can correctly import TIFF files that were saved from 'ImageJ' and
write TIFF files than can be correctly read by 'ImageJ'
<https://imagej.nih.gov/ij/>. Also supports text image I/O.
Author: Rory Nolan [aut, cre] (<https://orcid.org/0000-0002-5239-4043>),
Kent Johnson [aut],
Simon Urbanek [ctb],
Sergi Padilla-Parra [ths] (<https://orcid.org/0000-0002-8010-9481>),
Jeroen Ooms [rev, ctb] (<https://orcid.org/0000-0002-4035-0289>),
Jon Clayden [rev] (<https://orcid.org/0000-0002-6608-0619>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between ijtiff versions 2.2.4 dated 2020-11-09 and 2.2.5 dated 2021-01-14
ijtiff-2.2.4/ijtiff/tests/testthat/testthat-files |only ijtiff-2.2.5/ijtiff/DESCRIPTION | 11 ijtiff-2.2.5/ijtiff/MD5 | 34 +- ijtiff-2.2.5/ijtiff/NEWS.md | 13 ijtiff-2.2.5/ijtiff/R/class_constructors.R | 8 ijtiff-2.2.5/ijtiff/R/graphics.R | 2 ijtiff-2.2.5/ijtiff/R/utils.R | 15 ijtiff-2.2.5/ijtiff/inst/doc/reading-and-writing-images.html | 74 ---- ijtiff-2.2.5/ijtiff/inst/doc/text-images.html | 7 ijtiff-2.2.5/ijtiff/inst/doc/the-imagej-problem.html | 66 ---- ijtiff-2.2.5/ijtiff/src/read.c | 63 +-- ijtiff-2.2.5/ijtiff/src/utils.c | 2 ijtiff-2.2.5/ijtiff/tests/testthat/_snaps |only ijtiff-2.2.5/ijtiff/tests/testthat/test-as_EBImage-examples.R | 8 ijtiff-2.2.5/ijtiff/tests/testthat/test-graphics.R | 41 ++ ijtiff-2.2.5/ijtiff/tests/testthat/test-io.R | 162 ++++++---- ijtiff-2.2.5/ijtiff/tests/testthat/test-print.R | 7 ijtiff-2.2.5/ijtiff/tests/testthat/test-utils.R | 37 ++ ijtiff-2.2.5/ijtiff/tools/config/configure.R | 54 ++- 19 files changed, 296 insertions(+), 308 deletions(-)
Title: Plots Coefficients from Fitted Models
Description: Plots the coefficients from model objects. This very quickly shows the user the point estimates and confidence intervals for fitted models.
Author: Jared P. Lander
Maintainer: Jared P. Lander <packages@jaredlander.com>
Diff between coefplot versions 1.2.6 dated 2018-02-07 and 1.2.7 dated 2021-01-14
DESCRIPTION | 19 MD5 | 70 +- NAMESPACE | 1 NEWS.md | 128 ++--- R/buildPlot.r | 57 +- R/buildPlotPlotly.r |only R/coefpath.r | 270 +++++------ R/coefplot.r | 122 +++-- R/extractCoef.r | 776 +++++++++++++++++---------------- R/multiplot.r | 30 - README.md | 18 man/annotateSeries.Rd | 13 man/buildModelCI.default.Rd | 22 man/buildPlotting.default.Rd | 42 + man/buildPlottingPloty.default.Rd |only man/coefpath.Rd | 37 + man/coefplot.Rd | 2 man/coefplot.data.frame.Rd | 43 + man/coefplot.default.Rd | 55 +- man/coefplot.model_fit.Rd |only man/coefplot.workflow.Rd |only man/extract.coef.Rd | 8 man/extract.coef.cv.glmnet.Rd | 11 man/extract.coef.default.Rd | 5 man/extract.coef.glm.Rd | 5 man/extract.coef.glmnet.Rd | 22 man/extract.coef.lm.Rd | 5 man/extract.coef.maxLik.Rd | 19 man/extract.coef.rxGlm.Rd | 8 man/extract.coef.rxLinMod.Rd | 8 man/extract.coef.rxLogit.Rd | 8 man/extract.coef.xgb.Booster.Rd | 27 - man/getCoefsFromPredictors.default.Rd | 3 man/getCoefsFromPredictors.rxGlm.Rd | 3 man/getCoefsFromPredictors.rxLinMod.Rd | 3 man/getCoefsFromPredictors.rxLogit.Rd | 3 man/multiplot.Rd | 62 ++ man/position_dodgev.Rd | 1 38 files changed, 1109 insertions(+), 797 deletions(-)
Title: Object Pooling
Description: Enables the creation of object pools, which make it
less computationally expensive to fetch a new object. Currently the
only supported pooled objects are 'DBI' connections.
Author: Joe Cheng [aut, cre],
Barbara Borges [aut],
RStudio [cph]
Maintainer: Joe Cheng <joe@rstudio.com>
Diff between pool versions 0.1.5 dated 2020-11-03 and 0.1.6 dated 2021-01-14
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 9 +++++++++ R/dbplyr.R | 33 +++++++++++++++++++++------------ R/scheduler.R | 7 ++----- R/zzz-hooks.R | 2 +- man/dplyr-db-methods.Rd | 8 ++++---- tests/testthat/test-dbplyr.R | 25 +++++++++++++++++++++++++ 8 files changed, 73 insertions(+), 33 deletions(-)
Title: Non-Parametric Bayesian Multiple Imputation for Categorical Data
Description: These routines create multiple imputations of missing at random categorical data, and create multiply imputed synthesis of categorical data, with or without structural zeros. Imputations and syntheses are based on Dirichlet process mixtures of multinomial distributions, which is a non-parametric Bayesian modeling approach that allows for flexible joint modeling, described in Manrique-Vallier and Reiter (2014) <doi:10.1080/10618600.2013.844700>.
Author: Quanli Wang, Daniel Manrique-Vallier, Jerome P. Reiter and Jingchen Hu
Maintainer: Jingchen Hu <jingchen.monika.hu@gmail.com>
Diff between NPBayesImputeCat versions 0.2 dated 2019-11-08 and 0.3 dated 2021-01-14
NPBayesImputeCat-0.2/NPBayesImputeCat/data/ss16pusa_sample.RData |only NPBayesImputeCat-0.2/NPBayesImputeCat/man/ss16pusa_sample.Rd |only NPBayesImputeCat-0.3/NPBayesImputeCat/DESCRIPTION | 11 +- NPBayesImputeCat-0.3/NPBayesImputeCat/MD5 | 46 +++++----- NPBayesImputeCat-0.3/NPBayesImputeCat/NAMESPACE | 15 ++- NPBayesImputeCat-0.3/NPBayesImputeCat/R/AllFunctions.R |only NPBayesImputeCat-0.3/NPBayesImputeCat/man/CreateModel.Rd | 2 NPBayesImputeCat-0.3/NPBayesImputeCat/man/DPMPM_nozeros_imp.Rd |only NPBayesImputeCat-0.3/NPBayesImputeCat/man/DPMPM_nozeros_syn.Rd |only NPBayesImputeCat-0.3/NPBayesImputeCat/man/DPMPM_zeros_imp.Rd |only NPBayesImputeCat-0.3/NPBayesImputeCat/man/GetDataFrame.Rd | 2 NPBayesImputeCat-0.3/NPBayesImputeCat/man/MCZ.Rd | 26 +++-- NPBayesImputeCat-0.3/NPBayesImputeCat/man/NPBayesImputCat-package.Rd | 2 NPBayesImputeCat-0.3/NPBayesImputeCat/man/Rcpp_Lcm-class.Rd | 5 - NPBayesImputeCat-0.3/NPBayesImputeCat/man/X.Rd | 31 ++++-- NPBayesImputeCat-0.3/NPBayesImputeCat/man/compute_probs.Rd |only NPBayesImputeCat-0.3/NPBayesImputeCat/man/fit_GLMs.Rd |only NPBayesImputeCat-0.3/NPBayesImputeCat/man/marginal_compare_all_imp.Rd |only NPBayesImputeCat-0.3/NPBayesImputeCat/man/marginal_compare_all_syn.Rd |only NPBayesImputeCat-0.3/NPBayesImputeCat/man/pool_estimated_probs.Rd |only NPBayesImputeCat-0.3/NPBayesImputeCat/man/pool_fitted_GLMs.Rd |only NPBayesImputeCat-0.3/NPBayesImputeCat/man/ss16pusa_ds_MCZ.Rd | 16 ++- NPBayesImputeCat-0.3/NPBayesImputeCat/man/ss16pusa_mi_MCZ.Rd | 16 ++- NPBayesImputeCat-0.3/NPBayesImputeCat/man/ss16pusa_sample_nozeros.Rd | 11 +- NPBayesImputeCat-0.3/NPBayesImputeCat/man/ss16pusa_sample_nozeros_miss.Rd | 11 +- NPBayesImputeCat-0.3/NPBayesImputeCat/man/ss16pusa_sample_zeros.Rd | 13 ++ NPBayesImputeCat-0.3/NPBayesImputeCat/man/ss16pusa_sample_zeros_miss.Rd | 13 ++ NPBayesImputeCat-0.3/NPBayesImputeCat/src/CEnv.cpp | 27 ++++- NPBayesImputeCat-0.3/NPBayesImputeCat/src/CEnv.h | 5 - NPBayesImputeCat-0.3/NPBayesImputeCat/src/lczmain.cpp | 2 30 files changed, 176 insertions(+), 78 deletions(-)
More information about NPBayesImputeCat at CRAN
Permanent link
Title: Measuring Agreement Using Krippendorff's Alpha Coefficient
Description: Provides tools for applying Krippendorff's Alpha methodology <DOI:10.1080/19312450709336664>. The framework supports common and user-defined distance functions, and can accommodate any number of units, any number of coders, and missingness. Bootstrap inference is permitted, and the computation can be done in parallel.
Author: John Hughes
Maintainer: John Hughes <drjphughesjr@gmail.com>
Diff between krippendorffsalpha versions 1.0 dated 2020-06-04 and 1.1 dated 2021-01-14
COPYING | 2 DESCRIPTION | 14 +-- MD5 | 21 ++--- NAMESPACE | 6 + R/krippendorff.R | 145 ++++++++++++++++++++++++++---------- R/zzz.R | 10 +- man/confint.krippendorffsalpha.Rd | 16 +-- man/influence.krippendorffsalpha.Rd | 16 +-- man/krippendorffs.alpha.Rd | 18 ++-- man/plot.krippendorffsalpha.Rd |only man/summary.krippendorffsalpha.Rd | 15 +-- tests |only 12 files changed, 173 insertions(+), 90 deletions(-)
More information about krippendorffsalpha at CRAN
Permanent link
Title: Easy Access to Model Information for Various Model Objects
Description: A tool to provide an easy, intuitive and consistent access to
information contained in various R models, like model formulas, model terms,
information about random effects, data that was used to fit the model or
data from response variables. 'insight' mainly revolves around two types
of functions: Functions that find (the names of) information, starting with
'find_', and functions that get the underlying data, starting with 'get_'.
The package has a consistent syntax and works with many different model
objects, where otherwise functions to access these information are missing.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>,
@strengejacke),
Dominique Makowski [aut, ctb] (<https://orcid.org/0000-0001-5375-9967>),
Indrajeet Patil [aut, ctb] (<https://orcid.org/0000-0003-1995-6531>),
Philip Waggoner [aut, ctb] (<https://orcid.org/0000-0002-7825-7573>),
Mattan S. Ben-Shachar [aut, ctb]
(<https://orcid.org/0000-0002-4287-4801>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between insight versions 0.11.1 dated 2020-12-08 and 0.12.0 dated 2021-01-14
insight-0.11.1/insight/man/parameters_table.Rd |only insight-0.12.0/insight/DESCRIPTION | 29 insight-0.12.0/insight/MD5 | 206 - insight-0.12.0/insight/NAMESPACE | 164 insight-0.12.0/insight/NEWS.md | 74 insight-0.12.0/insight/R/all_equal_models.R | 23 insight-0.12.0/insight/R/clean_names.R | 19 insight-0.12.0/insight/R/clean_parameters.R | 74 insight-0.12.0/insight/R/compute_variances.R | 38 insight-0.12.0/insight/R/display.R | 12 insight-0.12.0/insight/R/ellipsis_info.R |only insight-0.12.0/insight/R/export_table.R | 171 - insight-0.12.0/insight/R/find_algorithm.R | 11 insight-0.12.0/insight/R/find_formula.R | 289 + insight-0.12.0/insight/R/find_parameter_zi.R |only insight-0.12.0/insight/R/find_parameters.R | 1290 ------- insight-0.12.0/insight/R/find_parameters_bayesian.R |only insight-0.12.0/insight/R/find_parameters_gam.R |only insight-0.12.0/insight/R/find_parameters_mfx.R |only insight-0.12.0/insight/R/find_parameters_mixed.R |only insight-0.12.0/insight/R/find_parameters_other.R |only insight-0.12.0/insight/R/find_random.R | 3 insight-0.12.0/insight/R/find_response.R | 4 insight-0.12.0/insight/R/find_statistic.R | 30 insight-0.12.0/insight/R/format_ci.R | 7 insight-0.12.0/insight/R/format_table.R | 86 insight-0.12.0/insight/R/get_auxiliary.R |only insight-0.12.0/insight/R/get_call.R |only insight-0.12.0/insight/R/get_data.R | 61 insight-0.12.0/insight/R/get_deviance.R |only insight-0.12.0/insight/R/get_df.R |only insight-0.12.0/insight/R/get_intercept.R |only insight-0.12.0/insight/R/get_loglikelihood.R |only insight-0.12.0/insight/R/get_parameters.R | 1664 ---------- insight-0.12.0/insight/R/get_parameters_bayesian.R |only insight-0.12.0/insight/R/get_parameters_emmeans.R |only insight-0.12.0/insight/R/get_parameters_gam.R |only insight-0.12.0/insight/R/get_parameters_mfx.R |only insight-0.12.0/insight/R/get_parameters_mixed.R |only insight-0.12.0/insight/R/get_parameters_others.R |only insight-0.12.0/insight/R/get_parameters_zi.R |only insight-0.12.0/insight/R/get_predicted.R |only insight-0.12.0/insight/R/get_priors.R | 78 insight-0.12.0/insight/R/get_residuals.R |only insight-0.12.0/insight/R/get_sigma.R | 24 insight-0.12.0/insight/R/get_statistic.R | 127 insight-0.12.0/insight/R/get_varcov.R | 325 - insight-0.12.0/insight/R/get_weights.R | 52 insight-0.12.0/insight/R/helper_functions.R | 83 insight-0.12.0/insight/R/is_mixed_model.R |only insight-0.12.0/insight/R/is_model.R | 517 +-- insight-0.12.0/insight/R/is_model_supported.R | 10 insight-0.12.0/insight/R/is_nested_models.R |only insight-0.12.0/insight/R/link_function.R | 24 insight-0.12.0/insight/R/link_inverse.R | 24 insight-0.12.0/insight/R/model_info.R | 36 insight-0.12.0/insight/R/model_name.R |only insight-0.12.0/insight/R/n_obs.R | 99 insight-0.12.0/insight/R/n_parameters.R |only insight-0.12.0/insight/R/null_model.R | 6 insight-0.12.0/insight/R/standardize_names.R | 27 insight-0.12.0/insight/R/utils_get_data.R | 86 insight-0.12.0/insight/R/utils_model_info.R | 37 insight-0.12.0/insight/README.md | 110 insight-0.12.0/insight/build/partial.rdb |binary insight-0.12.0/insight/build/vignette.rds |binary insight-0.12.0/insight/inst/WORDLIST | 7 insight-0.12.0/insight/inst/doc/insight.html | 40 insight-0.12.0/insight/man/all_models_equal.Rd | 23 insight-0.12.0/insight/man/clean_names.Rd | 19 insight-0.12.0/insight/man/display.Rd | 8 insight-0.12.0/insight/man/ellipsis_info.Rd |only insight-0.12.0/insight/man/export_table.Rd | 51 insight-0.12.0/insight/man/find_algorithm.Rd | 10 insight-0.12.0/insight/man/find_formula.Rd | 95 insight-0.12.0/insight/man/find_parameters.BGGM.Rd |only insight-0.12.0/insight/man/find_parameters.Rd | 138 insight-0.12.0/insight/man/find_parameters.averaging.Rd |only insight-0.12.0/insight/man/find_parameters.betamfx.Rd |only insight-0.12.0/insight/man/find_parameters.gamlss.Rd |only insight-0.12.0/insight/man/find_parameters.glmmTMB.Rd |only insight-0.12.0/insight/man/find_parameters.zeroinfl.Rd |only insight-0.12.0/insight/man/format_table.Rd |only insight-0.12.0/insight/man/get_auxiliary.Rd |only insight-0.12.0/insight/man/get_call.Rd |only insight-0.12.0/insight/man/get_deviance.Rd |only insight-0.12.0/insight/man/get_df.Rd |only insight-0.12.0/insight/man/get_intercept.Rd |only insight-0.12.0/insight/man/get_loglikelihood.Rd |only insight-0.12.0/insight/man/get_parameters.BGGM.Rd |only insight-0.12.0/insight/man/get_parameters.Rd | 198 - insight-0.12.0/insight/man/get_parameters.betamfx.Rd |only insight-0.12.0/insight/man/get_parameters.betareg.Rd |only insight-0.12.0/insight/man/get_parameters.emmGrid.Rd |only insight-0.12.0/insight/man/get_parameters.gamm.Rd |only insight-0.12.0/insight/man/get_parameters.glmm.Rd |only insight-0.12.0/insight/man/get_parameters.zeroinfl.Rd |only insight-0.12.0/insight/man/get_predicted.Rd |only insight-0.12.0/insight/man/get_residuals.Rd |only insight-0.12.0/insight/man/get_sigma.Rd | 12 insight-0.12.0/insight/man/get_statistic.Rd | 4 insight-0.12.0/insight/man/get_weights.Rd | 21 insight-0.12.0/insight/man/is_mixed_model.Rd |only insight-0.12.0/insight/man/is_model.Rd | 15 insight-0.12.0/insight/man/is_nested_models.Rd |only insight-0.12.0/insight/man/model_info.Rd | 2 insight-0.12.0/insight/man/model_name.Rd |only insight-0.12.0/insight/man/n_parameters.Rd |only insight-0.12.0/insight/tests/testthat/test-BayesFactorBF.R | 25 insight-0.12.0/insight/tests/testthat/test-GLMMadaptive.R | 2 insight-0.12.0/insight/tests/testthat/test-all_models_equal.R | 3 insight-0.12.0/insight/tests/testthat/test-coxme.R | 6 insight-0.12.0/insight/tests/testthat/test-ellipses_info.R |only insight-0.12.0/insight/tests/testthat/test-find_random.R |only insight-0.12.0/insight/tests/testthat/test-find_smooth.R | 45 insight-0.12.0/insight/tests/testthat/test-fixest.R | 2 insight-0.12.0/insight/tests/testthat/test-gam.R | 2 insight-0.12.0/insight/tests/testthat/test-gamm.R | 110 insight-0.12.0/insight/tests/testthat/test-gamm4.R | 19 insight-0.12.0/insight/tests/testthat/test-get_auxiliary.R |only insight-0.12.0/insight/tests/testthat/test-get_deviance.R |only insight-0.12.0/insight/tests/testthat/test-get_loglikelihood.R |only insight-0.12.0/insight/tests/testthat/test-get_residuals.R |only insight-0.12.0/insight/tests/testthat/test-glm.R | 14 insight-0.12.0/insight/tests/testthat/test-glmrob_base.R | 2 insight-0.12.0/insight/tests/testthat/test-has_intercept.R | 3 insight-0.12.0/insight/tests/testthat/test-htest.R |only insight-0.12.0/insight/tests/testthat/test-is_nullmodel.R | 6 insight-0.12.0/insight/tests/testthat/test-lm.R | 37 insight-0.12.0/insight/tests/testthat/test-lmer.R | 17 insight-0.12.0/insight/tests/testthat/test-lmtest.R |only insight-0.12.0/insight/tests/testthat/test-metaBMA.R | 14 insight-0.12.0/insight/tests/testthat/test-rstanarm.R | 32 insight-0.12.0/insight/tests/testthat/test-standardize_names.R | 19 insight-0.12.0/insight/tests/testthat/test-survreg.R | 4 135 files changed, 2710 insertions(+), 4215 deletions(-)
Title: Pipe-Friendly Vector Replacement with Case Statements
Description: Offers a pipe-friendly alternative to the 'dplyr'
functions case_when() and if_else(). These functions accept a vector
as an optional first argument, allowing conditional statements to be
built using the 'magrittr' dot operator. The functions also coerce
all possible outputs to the same type, meaning you no longer have to
worry about using specific typed variants of NA or explicitly
declaring integer outputs.
Author: Alexander Rossell Hayes [aut, cre, cph]
(<https://orcid.org/0000-0001-9412-0457>)
Maintainer: Alexander Rossell Hayes <alexander@rossellhayes.com>
Diff between incase versions 0.2.0 dated 2020-12-17 and 0.2.1 dated 2021-01-14
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NEWS.md | 5 +++++ R/check_length_val.R | 14 +++----------- R/fn_case.R | 2 +- R/if_case.R | 20 ++++++-------------- R/in_case.R | 2 +- R/replace_with.R | 4 ++-- R/validate_case_when_length.R | 10 ++++++++-- tests/testthat/test-if_case.R | 2 +- tests/testthat/test-in_case.R | 5 ++++- 11 files changed, 45 insertions(+), 47 deletions(-)
Title: Inspect, Read, Edit and Run 'APSIM' "Next Generation" and
'APSIM' Classic
Description: The functions in this package inspect, read, edit and run files for 'APSIM' "Next Generation" ('JSON')
and 'APSIM' "Classic" ('XML'). The files with an 'apsim' extension correspond to
'APSIM' Classic (7.x) - Windows only - and the ones with an 'apsimx' extension correspond to 'APSIM' "Next Generation".
For more information about 'APSIM' see (<https://www.apsim.info/>) and for 'APSIM'
next generation (<https://apsimnextgeneration.netlify.app/>).
Author: Fernando Miguez [aut, cre] (<https://orcid.org/0000-0002-4627-8329>)
Maintainer: Fernando Miguez <femiguez@iastate.edu>
Diff between apsimx versions 1.964 dated 2020-10-16 and 1.971 dated 2021-01-14
DESCRIPTION | 8 MD5 | 76 ++++--- NAMESPACE | 8 R/apsim_classic.R | 29 ++ R/apsim_internal.R | 4 R/apsim_met.R | 117 ++++++++--- R/apsimx.R | 23 +- R/compare_apsim.R |only R/compare_apsim_met.R | 36 ++- R/edit_apsimx_replacement.R | 6 R/get_gsod_apsim_met.R | 8 R/inspect_apsim_xml.R | 177 +++++++++++++---- R/inspect_apsimx_replacement.R | 119 +++++++++-- R/optim_apsim.R | 67 ++++++ R/optim_apsimx.R | 6 R/unit_conv.R | 124 +++++++++++- R/zzz.R | 5 README.md | 6 build/vignette.rds |binary inst/doc/apsimx-scripts.R | 8 inst/doc/apsimx-scripts.html | 62 +++++- inst/doc/apsimx.R | 74 +++---- inst/doc/apsimx.Rmd | 35 ++- inst/doc/apsimx.html | 389 ++++++++++++++++++++------------------ inst/doc/optim-apsim.R | 30 +- inst/doc/optim-apsim.html | 66 +++++- man/compare_apsim.Rd |only man/compare_apsim_met.Rd | 19 + man/doy2date.Rd |only man/edit_apsimx_replacement.Rd | 2 man/impute_apsim_met.Rd | 12 - man/inspect_apsim.Rd | 14 + man/inspect_apsimx_replacement.Rd | 15 + man/napad_apsim_met.Rd |only man/optim_apsim.Rd | 18 + man/unit_conv.Rd | 20 + tests/test_compare_apsim.R |only tests/test_get_gsod_apsim_met.R |only tests/test_inspect_apsim_xml.R |only tests/test_optim_apsimx.R | 11 - tests/test_replacements.R | 7 tests/wop-mcmc.RData |only vignettes/apsimx.Rmd | 35 ++- 43 files changed, 1162 insertions(+), 474 deletions(-)
Title: Taxometric Analysis
Description: We provide functions to perform taxometric analyses. This package contains 44 functions, but only 5 should be called directly by users. CheckData() should be run prior to any taxometric analysis to ensure that the data are appropriate for taxometric analysis. RunTaxometrics() performs taxometric analyses for a sample of data. RunCCFIProfile() performs a series of taxometric analyses to generate a CCFI profile. CreateData() generates a sample of categorical or dimensional data. ClassifyCases() assigns cases to groups using the base-rate classification method.
Author: John Ruscio <ruscio@tcnj.edu> and Shirley Wang <shirleywang@g.harvard.edu>
Maintainer: John Ruscio <ruscio@tcnj.edu>
Diff between RTaxometrics versions 3.0 dated 2020-11-01 and 3.1 dated 2021-01-14
DESCRIPTION | 8 ++++---- LICENSE | 2 +- MD5 | 20 +++++++++++--------- NAMESPACE | 2 +- R/GetSpecifications.R | 1 - R/RemoveMissingData.R | 21 +++++++-------------- R/RunCCFIProfile.R | 14 +++++++++----- R/RunTaxometrics.R | 10 +++++++--- R/print.profile.R |only R/print.taxometrics.R |only man/RunCCFIProfile.Rd | 4 ++-- man/RunTaxometrics.Rd | 4 ++-- 12 files changed, 44 insertions(+), 42 deletions(-)
Title: Download 'Qualtrics' Survey Data
Description: Provides functions to access survey results directly into R using
the 'Qualtrics' API. 'Qualtrics' <https://www.qualtrics.com/about/> is an
online survey and data collection software platform. See
<https://api.qualtrics.com/> for more information about the 'Qualtrics' API.
This package is community-maintained and is not officially supported by
'Qualtrics'.
Author: Jasper Ginn [aut],
Jackson Curtis [ctb],
Shaun Jackson [ctb],
Samuel Kaminsky [ctb],
Eric Knudsen [ctb],
Joseph O'Brien [ctb],
Daniel Seneca [ctb],
Julia Silge [aut, cre] (<https://orcid.org/0000-0002-3671-836X>),
Phoebe Wong [ctb]
Maintainer: Julia Silge <julia.silge@gmail.com>
Diff between qualtRics versions 3.1.3 dated 2020-05-22 and 3.1.4 dated 2021-01-14
DESCRIPTION | 12 - MD5 | 100 ++++---- NAMESPACE | 17 + NEWS.md | 9 R/all_surveys.R | 2 R/assertions.R | 17 + R/column_map.R | 2 R/extract_colmap.R |only R/fetch_distributions.R |only R/fetch_mailinglist.R | 10 R/fetch_survey.R | 32 ++ R/globals.R | 5 R/qualtrics_api_credentials.R | 8 R/read_survey.R | 225 ++++++++++++------ R/survey_questions.R | 2 R/utils.R | 36 ++- build/vignette.rds |binary inst/doc/qualtRics.Rmd | 8 inst/doc/qualtRics.html | 285 +++++------------------- man/all_surveys.Rd | 2 man/column_map.Rd | 2 man/construct_header.Rd | 5 man/create_root_url.Rd | 2 man/extract_colmap.Rd |only man/fetch_distributions.Rd |only man/fetch_survey.Rd | 24 +- man/qualtrics_api_credentials.Rd | 4 man/read_survey.Rd | 18 + man/survey_questions.Rd | 2 tests/fixtures/all_mailinglists.yml | 2 tests/fixtures/all_surveys.yml | 2 tests/fixtures/colmap_fetch.yml |only tests/fixtures/column_map.yml | 2 tests/fixtures/extract_colmap.yml |only tests/fixtures/fetch_distributions.yml |only tests/fixtures/fetch_mailinglist.yml | 2 tests/fixtures/fetch_one_qid.yml |only tests/fixtures/fetch_survey.yml | 10 tests/fixtures/fetch_survey_custom.yml | 14 - tests/fixtures/metadata.yml | 2 tests/fixtures/metadata_flow.yml | 2 tests/fixtures/survey_questions.yml | 2 tests/testthat/helper-qualtRics.R | 30 ++ tests/testthat/test-all-mailinglists.R | 2 tests/testthat/test-all-surveys.R | 13 - tests/testthat/test-api-credentials.R | 4 tests/testthat/test-column_map.R | 2 tests/testthat/test-download-qualtrics-export.R | 5 tests/testthat/test-extract-colmap.R |only tests/testthat/test-fetch-distributions.R |only tests/testthat/test-fetch-mailinglist.R | 2 tests/testthat/test-fetch-survey.R | 71 ++++- tests/testthat/test-metadata.R | 7 tests/testthat/test-qualtrics-api-request.R | 3 tests/testthat/test-survey-questions.R | 12 - vignettes/qualtRics.Rmd | 8 56 files changed, 560 insertions(+), 466 deletions(-)
Title: An Interface for Microclimate Time Series Analysis
Description: An R code with a GUI for microclimate time series, with an emphasis on underground environments. 'KarsTS' provides linear and nonlinear methods, including recurrence analysis (Marwan et al. (2007) <doi:10.1016/j.physrep.2006.11.001>) and filling methods (Moffat et al. (2007) <doi:10.1016/j.agrformet.2007.08.011>), as well as tools to manipulate easily time series and gap sets.
Author: Marina Saez [aut, cre],
David Benavente [ths],
Soledad Cuezva [ths],
Concepcion Pla [ctb]
Maintainer: Marina Saez <marinasaez_andreu@hotmail.com>
Diff between KarsTS versions 2.4 dated 2020-12-15 and 2.4.1 dated 2021-01-14
DESCRIPTION | 14 MD5 | 12 NEWS | 6 README | 2 build/partial.rdb |binary inst/extdata/KarsTS-manual.pdf | 5316 +++++++++++++++++++-------------------- inst/extdata/KarsTSUserGuide.pdf |binary 7 files changed, 2679 insertions(+), 2671 deletions(-)
Title: Reproducible Scripts via Version-Specific Package Loading
Description: Make R scripts that rely on packages reproducible, by ensuring that
every time a given script is run, the same version of the used packages are
loaded (instead of whichever version the user running the script happens to
have installed). This is achieved by using the new command
groundhog.library() instead of the base command library(), and including a
date in the call. The date is used to call on the same version of the
package every time (the most recent version available on CRAN at that date).
Author: Uri Simonsohn [aut, cre] (<https://orcid.org/0000-0002-8601-7211>),
Hugo Gruson [ctb, aut] (<https://orcid.org/0000-0002-4094-1476>)
Maintainer: Uri Simonsohn <urisohn@gmail.com>
Diff between groundhog versions 1.1.0 dated 2021-01-04 and 1.2.0 dated 2021-01-14
DESCRIPTION | 6 +-- MD5 | 16 ++++----- R/get.groundhog.folder.R | 6 ++- R/groundhog.library.R | 66 +++++++++++++++++++++++++++++++++++++---- R/zzz.R | 10 ++++-- README.md | 58 +----------------------------------- man/check.snowball.conflict.Rd | 2 - man/groundhog.library.Rd | 2 - man/install.snowball.Rd | 2 - 9 files changed, 88 insertions(+), 80 deletions(-)
Title: Diversity-Dependent Diversification
Description: Implements maximum likelihood and bootstrap methods based on
the diversity-dependent birth-death process to test whether
speciation or extinction are diversity-dependent, under various
models including various types of key innovations.
See Etienne et al. 2012, Proc. Roy. Soc. B 279: 1300-1309,
<DOI:10.1098/rspb.2011.1439>,
Etienne & Haegeman 2012, Am. Nat. 180: E75-E89,
<DOI:10.1086/667574> and
Etienne et al. 2016. Meth. Ecol. Evol. 7: 1092-1099,
<DOI:10.1111/2041-210X.12565>.
Also contains functions to simulate the diversity-dependent
process.
Author: Rampal S. Etienne & Bart Haegeman
Maintainer: Rampal S. Etienne <r.s.etienne@rug.nl>
Diff between DDD versions 4.4 dated 2020-06-02 and 4.4.1 dated 2021-01-14
DESCRIPTION | 10 +++++----- MD5 | 9 +++++---- R/dd_KI_ML.R | 2 +- R/dd_KI_loglik.R | 2 +- configure |only man/dd_KI_ML.Rd | 2 +- 6 files changed, 13 insertions(+), 12 deletions(-)
Title: NanoString Quality Control Dashboard
Description: NanoString nCounter data are gene expression assays
where there is no need for the use of enzymes or amplification
protocols and work with fluorescent barcodes (Geiss et al. (2018)
<doi:10.1038/nbt1385>). Each barcode is assigned a
messenger-RNA/micro-RNA (mRNA/miRNA) which after bonding with its
target can be counted. As a result each count of a specific barcode
represents the presence of its target mRNA/miRNA. 'NACHO' (NAnoString
quality Control dasHbOard) is able to analyse the exported NanoString
nCounter data and facilitates the user in performing a quality
control. 'NACHO' does this by visualising quality control metrics,
expression of control genes, principal components and sample specific
size factors in an interactive web application.
Author: Mickaël Canouil [aut, cre] (<https://orcid.org/0000-0002-3396-4549>),
Roderick Slieker [aut] (<https://orcid.org/0000-0003-0961-9152>),
Gerard Bouland [aut]
Maintainer: Mickaël Canouil <mickael.canouil@cnrs.fr>
Diff between NACHO versions 1.0.2 dated 2021-01-05 and 1.1.0 dated 2021-01-14
DESCRIPTION | 10 +- MD5 | 18 ++-- NEWS.md | 21 +++++ R/autoplot.R | 10 +- R/load_rcc.R | 19 ----- R/norm_glm.R | 3 inst/doc/NACHO-analysis.html | 34 ++++----- inst/doc/NACHO.html | 58 ++++++--------- tests/testthat/test-load_rcc.R | 150 ++++++++++++++++++++-------------------- tests/testthat/test-normalise.R | 2 10 files changed, 162 insertions(+), 163 deletions(-)
Title: Arrange Elements on the R's Drawing Area or Inside the
PowerPoint's Slide
Description: Create complicated drawing areas for multiple elements by combining much simpler layouts. It is an extended version of layout function from the 'graphics' package, but it also works with 'grid' graphics. It also supports arranging elements inside 'PowerPoint' slides created using the 'officer' package.
Author: Zygmunt Zawadzki [aut, cre]
Maintainer: Zygmunt Zawadzki <zygmunt@zstat.pl>
Diff between customLayout versions 0.3.1 dated 2020-01-17 and 0.3.2 dated 2021-01-14
DESCRIPTION | 9 MD5 | 39 +- README.md | 2 build/vignette.rds |binary inst/doc/Roadmap.html | 38 +- inst/doc/customlayout-cookbook.html | 242 +++++++------ inst/doc/layouts-for-officer-power-point-document.html | 311 +++++++++-------- tests/figs/basic-bind-col.svg | 16 tests/figs/basic-bind-row.svg | 16 tests/figs/deps.txt | 4 tests/figs/reps-functions/rep-by-col.svg | 24 - tests/figs/reps-functions/rep-by-row.svg | 24 - tests/figs/split-field/basic-split-field-1.svg | 14 tests/figs/split-field/basic-split-field-2.svg | 14 tests/figs/split-field/basic-split-field-3.svg | 14 tests/figs/split-field/basic-split-field-4.svg | 14 tests/pptx/phl_with_flextable.pptx |binary tests/pptx/phl_with_gg.pptx |binary tests/testthat/test-basic.R | 2 tests/testthat/test-flextable.R | 4 tests/testthat/testthat-problems.rds |only 21 files changed, 433 insertions(+), 354 deletions(-)
Title: 'Rcpp' Implementation of 'FSelector' Entropy-Based Feature
Selection Algorithms with a Sparse Matrix Support
Description: 'Rcpp' (free of 'Java'/'Weka') implementation of 'FSelector' entropy-based feature selection
algorithms based on an MDL discretization (Fayyad U. M., Irani K. B.: Multi-Interval Discretization of Continuous-Valued Attributes for Classification Learning.
In 13'th International Joint Conference on Uncertainly in Artificial Intelligence (IJCAI93), pages 1022-1029, Chambery, France, 1993.) <https://www.ijcai.org/Proceedings/93-2/Papers/022.pdf>
with a sparse matrix support.
Author: Zygmunt Zawadzki [aut, cre],
Marcin Kosinski [aut],
Krzysztof Slomczynski [ctb],
Damian Skrzypiec [ctb],
Patrick Schratz [ctb] (<https://orcid.org/0000-0003-0748-6624>)
Maintainer: Zygmunt Zawadzki <zygmunt@zstat.pl>
Diff between FSelectorRcpp versions 0.3.7 dated 2020-10-08 and 0.3.8 dated 2021-01-14
DESCRIPTION | 6 +-- MD5 | 28 ++++++++--------- build/vignette.rds |binary inst/doc/benchmarks_discretize.R | 2 - inst/doc/benchmarks_discretize.Rmd | 2 - inst/doc/benchmarks_discretize.html | 14 +++++++- inst/doc/get_started.html | 10 ++++++ inst/doc/integer-variables.R | 2 - inst/doc/integer-variables.Rmd | 2 - inst/doc/integer-variables.html | 46 ++++++++++++++++------------- tests/testthat/test-discretize_transform.R | 12 ++++++- tests/testthat/test-information_gain.R | 10 +++--- vignettes/RJreferences.bib | 2 - vignettes/benchmarks_discretize.Rmd | 2 - vignettes/integer-variables.Rmd | 2 - 15 files changed, 89 insertions(+), 51 deletions(-)
Title: Hydrological Data Discovery Tools
Description: Tools to discover hydrological data, accessing catalogues and databases from various data providers.
Author: Claudia Vitolo [aut, cre] (<https://orcid.org/0000-0002-4252-1176>),
Wouter Buytaert [ctb] (Supervisor),
Erin Le Dell [ctb] (Erin reviewed the package for rOpenSci, see
https://github.com/ropensci/software-review/issues/73),
Michael Sumner [ctb] (Michael reviewed the package for rOpenSci, see
https://github.com/ropensci/software-review/issues/73)
Maintainer: Claudia Vitolo <cvitolodev@gmail.com>
Diff between hddtools versions 0.9.1 dated 2020-05-25 and 0.9.3 dated 2021-01-14
DESCRIPTION | 20 +- MD5 | 30 +-- NEWS.md | 14 + R/KGClimateClass.R | 2 R/SEPA.R | 44 +++- R/bboxSpatialPolygon.R | 2 R/hddtools-package.R | 2 README.md | 8 inst/doc/hddtools_vignette.R | 48 ++--- inst/doc/hddtools_vignette.Rmd | 6 inst/doc/hddtools_vignette.html | 354 ++++++++++++++++++---------------------- man/KGClimateClass.Rd | 2 man/bboxSpatialPolygon.Rd | 2 man/hddtools.Rd | 2 tests/testthat/test-SEPA.R | 18 +- vignettes/hddtools_vignette.Rmd | 6 16 files changed, 290 insertions(+), 270 deletions(-)
Title: Interface to 'Altair'
Description: Interface to 'Altair' <https://altair-viz.github.io>, which itself
is a 'Python' interface to 'Vega-Lite' <https://vega.github.io/vega-lite/>.
This package uses the 'Reticulate' framework
<https://rstudio.github.io/reticulate/> to manage the interface between R
and 'Python'.
Author: Ian Lyttle [aut, cre] (<https://orcid.org/0000-0001-9962-4849>),
Haley Jeppson [aut],
Altair Developers [aut],
Alicia Schep [ctb] (<https://orcid.org/0000-0002-3915-0618>),
Jake Vanderplas [ctb] (Altair library),
Brian Granger [ctb] (Altair library)
Maintainer: Ian Lyttle <ian.lyttle@se.com>
Diff between altair versions 4.0.1 dated 2020-01-23 and 4.1.1 dated 2021-01-14
altair-4.0.1/altair/man/repr_text.altair.vegalite.v4.api.Chart.Rd |only altair-4.0.1/altair/man/repr_vegalite4.altair.vegalite.v4.api.Chart.Rd |only altair-4.1.1/altair/DESCRIPTION | 22 + altair-4.1.1/altair/MD5 | 29 +- altair-4.1.1/altair/NAMESPACE | 8 altair-4.1.1/altair/NEWS.md | 8 altair-4.1.1/altair/R/altair-package.R | 8 altair-4.1.1/altair/R/utils-jupyterlab.R | 6 altair-4.1.1/altair/R/utils-vegawidget.R | 11 altair-4.1.1/altair/R/zzz.R | 9 altair-4.1.1/altair/README.md | 114 +++++----- altair-4.1.1/altair/man/alt.Rd | 6 altair-4.1.1/altair/man/altair.Rd | 8 altair-4.1.1/altair/man/figures/README-example-1.svg | 2 altair-4.1.1/altair/man/install_altair.Rd | 6 altair-4.1.1/altair/man/repr_text.altair.vegalite.v4.api.TopLevelMixin.Rd |only altair-4.1.1/altair/man/repr_vegalite4.altair.vegalite.v4.api.TopLevelMixin.Rd |only altair-4.1.1/altair/man/vw_set_base_url.Rd |only 18 files changed, 136 insertions(+), 101 deletions(-)
Title: Statistical Analysis of Textual Data
Description: Provides a set of functions devoted to multivariate exploratory statistics on textual data. Classical methods such as correspondence analysis and agglomerative hierarchical clustering are available. Chronologically constrained agglomerative hierarchical clustering enriched with labelled-by-words trees is offered. Given a division of the corpus into parts, their characteristic words and documents are identified. Further, accessing to 'FactoMineR' functions is very easy. Two of them are relevant in textual domain. MFA() addresses multiple lexical table allowing applications such as dealing with multilingual corpora as well as simultaneously analyzing both open-ended and closed questions in surveys. See <http://xplortext.unileon.es> for examples.
Author: Mónica Bécue-Bertaut, Ramón Alvarez-Esteban, Josep-Anton Sánchez-Espigares, Belchin Kostov
Maintainer: Ramón Alvarez-Esteban <ramon.alvarez@unileon.es>
Diff between Xplortext versions 1.3.2 dated 2020-05-09 and 1.4.1 dated 2021-01-14
Xplortext-1.3.2/Xplortext/R/LexHCca_121.R |only Xplortext-1.4.1/Xplortext/DESCRIPTION | 20 Xplortext-1.4.1/Xplortext/MD5 | 41 Xplortext-1.4.1/Xplortext/NAMESPACE | 12 Xplortext-1.4.1/Xplortext/R/LexCA.R | 50 Xplortext-1.4.1/Xplortext/R/LexCHCca.R | 68 Xplortext-1.4.1/Xplortext/R/LexChar.R | 720 ++++++--- Xplortext-1.4.1/Xplortext/R/LexHCca.R | 1519 ++++++++------------- Xplortext-1.4.1/Xplortext/R/TextData.R | 85 - Xplortext-1.4.1/Xplortext/R/plot.LexChar.R | 212 ++ Xplortext-1.4.1/Xplortext/R/plot.LexHCca.R |only Xplortext-1.4.1/Xplortext/R/print.LexCA.R | 363 ++--- Xplortext-1.4.1/Xplortext/R/print.LexChar.R | 184 +- Xplortext-1.4.1/Xplortext/R/summary.LexChar.R |only Xplortext-1.4.1/Xplortext/build/partial.rdb |binary Xplortext-1.4.1/Xplortext/inst/Xplortext.pdf |binary Xplortext-1.4.1/Xplortext/man/LexCA.Rd | 2 Xplortext-1.4.1/Xplortext/man/LexChar.Rd | 34 Xplortext-1.4.1/Xplortext/man/LexHCca.Rd | 63 Xplortext-1.4.1/Xplortext/man/Xplortext-package.Rd | 8 Xplortext-1.4.1/Xplortext/man/plot.LexChar.Rd | 10 Xplortext-1.4.1/Xplortext/man/plot.LexHCca.Rd |only Xplortext-1.4.1/Xplortext/man/print.LexChar.Rd | 3 Xplortext-1.4.1/Xplortext/man/summary.LexChar.Rd |only 24 files changed, 1873 insertions(+), 1521 deletions(-)
More information about seasonalclumped at CRAN
Permanent link
More information about shinyRadioMatrix at CRAN
Permanent link
Title: Normalized Power Prior Bayesian Analysis
Description: Posterior sampling in several commonly used distributions using
normalized power prior as described in
Duan, Ye and Smith (2006) <doi:10.1002/env.752> and
Ibrahim et.al. (2015) <doi:10.1002/sim.6728>.
Sampling of the power parameter is achieved via
either independence Metropolis-Hastings or random walk Metropolis-Hastings
based on transformation.
Author: Zifei Han, Tianyu Bai and Keying Ye
Maintainer: Zifei Han <hanzifei1@gmail.com>
Diff between NPP versions 0.2.0 dated 2019-08-21 and 0.3.0 dated 2021-01-14
DESCRIPTION | 6 +++--- MD5 | 4 ++-- man/BerNPP.Rd | 4 ++-- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Kalman Filter and Smoother for Exponential Family State Space
Models
Description: State space modelling is an efficient and flexible framework for
statistical inference of a broad class of time series and other data. KFAS
includes computationally efficient functions for Kalman filtering, smoothing,
forecasting, and simulation of multivariate exponential family state space models,
with observations from Gaussian, Poisson, binomial, negative binomial, and gamma
distributions. See the paper by Helske (2017) <doi:10.18637/jss.v078.i10> for details.
Author: Jouni Helske [aut, cre] (<https://orcid.org/0000-0001-7130-793X>)
Maintainer: Jouni Helske <jouni.helske@iki.fi>
Diff between KFAS versions 1.4.1 dated 2020-12-08 and 1.4.2 dated 2021-01-14
ChangeLog | 8 ++ DESCRIPTION | 9 +- MD5 | 52 ++++++++-------- NAMESPACE | 156 +++++++++++++++++++++++++------------------------- R/KFAS-package.R | 129 +++++++++++++++++++++++++++++++---------- R/KFS.R | 26 +++++--- R/approxSSM.R | 8 +- R/fitSSM.R | 5 + R/importanceSSM.R | 13 ++-- R/logLik.SSModel.R | 37 ++++++++--- inst/doc/KFAS.pdf |binary man/GlobalTemp.Rd | 23 +++++++ man/KFAS.Rd | 100 +++++++++++++++++++++++--------- man/KFS.Rd | 15 ++++ man/alcohol.Rd | 1 man/approxSSM.Rd | 12 +++ man/boat.Rd | 2 man/fitSSM.Rd | 5 + man/importanceSSM.Rd | 6 + man/logLik.SSModel.Rd | 9 ++ src/approx.f95 | 11 +++ src/init.c | 12 +-- src/isample.f95 | 8 +- src/isamplefilter.f95 | 6 + src/ngfilter.f95 | 7 +- src/ngloglik.f95 | 12 +-- src/ngsmooth.f95 | 13 +--- 27 files changed, 450 insertions(+), 235 deletions(-)
Title: Tools for Environmental Analyses, Ecotoxicology and Various R
Functions
Description: Contains miscellaneous functions useful for managing 'NetCDF' files (see <https://en.wikipedia.org/wiki/NetCDF>), get moon phase and time for sun rise and fall, analyse and reconstruct periodic time series of temperature with irregular sinusoidal pattern, show scales and wind rose in plot with change of color of text, Metropolis-Hastings algorithm for Bayesian MCMC analysis, plot graphs or boxplot with error bars, search files in disk by there names or their content, read the contents of all files from a folder at one time.
Author: Marc Girondot
Maintainer: Marc Girondot <marc.girondot@u-psud.fr>
Diff between HelpersMG versions 4.3 dated 2020-08-12 and 4.4 dated 2021-01-14
HelpersMG-4.3/HelpersMG/R/tide.info.R |only HelpersMG-4.3/HelpersMG/man/tide.info.Rd |only HelpersMG-4.4/HelpersMG/DESCRIPTION | 12 - HelpersMG-4.4/HelpersMG/MD5 | 56 +++--- HelpersMG-4.4/HelpersMG/NAMESPACE | 2 HelpersMG-4.4/HelpersMG/NEWS | 8 HelpersMG-4.4/HelpersMG/R/HelpersMG-package.R | 4 HelpersMG-4.4/HelpersMG/R/MHalgoGen.R | 50 ++++-- HelpersMG-4.4/HelpersMG/R/RandomFromHessianOrMCMC.R | 139 +++++++++++++---- HelpersMG-4.4/HelpersMG/R/SEfromHessian.R | 6 HelpersMG-4.4/HelpersMG/R/as.parameters.R | 9 - HelpersMG-4.4/HelpersMG/R/barplot_errbar.R | 3 HelpersMG-4.4/HelpersMG/R/duplicated_packages.R | 8 HelpersMG-4.4/HelpersMG/R/flexit.R | 5 HelpersMG-4.4/HelpersMG/R/growlnotify.R | 15 - HelpersMG-4.4/HelpersMG/R/nlConfint.R | 6 HelpersMG-4.4/HelpersMG/R/plot.mcmcComposite.R | 2 HelpersMG-4.4/HelpersMG/R/sysdata.rda |binary HelpersMG-4.4/HelpersMG/man/HelpersMG-package.Rd | 4 HelpersMG-4.4/HelpersMG/man/MHalgoGen.Rd | 4 HelpersMG-4.4/HelpersMG/man/RandomFromHessianOrMCMC.Rd | 20 +- HelpersMG-4.4/HelpersMG/man/SEfromHessian.Rd | 6 HelpersMG-4.4/HelpersMG/man/as.parameters.Rd | 3 HelpersMG-4.4/HelpersMG/man/duplicated_packages.Rd | 8 HelpersMG-4.4/HelpersMG/man/flexit.Rd | 5 HelpersMG-4.4/HelpersMG/man/growlnotify.Rd | 5 HelpersMG-4.4/HelpersMG/man/index.periodic.Rd | 3 HelpersMG-4.4/HelpersMG/man/minmax.periodic.Rd | 3 HelpersMG-4.4/HelpersMG/man/moon.info.Rd | 3 HelpersMG-4.4/HelpersMG/man/sun.info.Rd | 3 30 files changed, 262 insertions(+), 130 deletions(-)
Title: Global Envelopes
Description: Implementation of global envelopes for a set of general d-dimensional vectors T
in various applications. A 100(1-alpha)% global envelope is a band bounded by two
vectors such that the probability that T falls outside this envelope in any of the d
points is equal to alpha. Global means that the probability is controlled simultaneously
for all the d elements of the vectors. The global envelopes can be used for graphical
Monte Carlo and permutation tests where the test statistic is a multivariate vector or
function (e.g. goodness-of-fit testing for point patterns and random sets, functional
analysis of variance, functional general linear model, n-sample test of correspondence
of distribution functions), for central regions of functional or multivariate data (e.g.
outlier detection, functional boxplot) and for global confidence and prediction bands
(e.g. confidence band in polynomial regression, Bayesian posterior prediction). See
Myllymäki and Mrkvička (2020) <arXiv:1911.06583>,
Myllymäki et al. (2017) <doi: 10.1111/rssb.12172>,
Mrkvička et al. (2017) <doi: 10.1007/s11222-016-9683-9>,
Mrkvička et al. (2020) <doi: 10.14736/kyb-2020-3-0432>,
Mrkvička et al. (2019) <doi: 10.1007/s11009-019-09756-y>,
Mrkvička et al. (2019) <arXiv:1902.04926>,
Mrkvička et al. (2016) <doi: 10.1016/j.spasta.2016.04.005>, and
Myllymäki et al. (2020) <doi: 10.1016/j.spasta.2020.100436>.
Author: Mari Myllymäki [aut, cre],
Tomáš Mrkvička [aut],
Pavel Grabarnik [ctb],
Ute Hahn [ctb],
Mikko Kuronen [ctb],
Michael Rost [ctb],
Henri Seijo [ctb]
Maintainer: Mari Myllymäki <mari.myllymaki@luke.fi>
Diff between GET versions 0.2-1 dated 2020-12-12 and 0.2-2 dated 2021-01-14
GET-0.2-1/GET/inst/doc/GET.R |only GET-0.2-1/GET/inst/doc/GET.Rnw |only GET-0.2-1/GET/inst/doc/pointpatterns.R |only GET-0.2-1/GET/inst/doc/pointpatterns.Rnw |only GET-0.2-1/GET/vignettes/GET.Rnw |only GET-0.2-1/GET/vignettes/pointpatterns.Rnw |only GET-0.2-2/GET/DESCRIPTION | 15 - GET-0.2-2/GET/MD5 | 142 ++++++---- GET-0.2-2/GET/R/GET-package.r | 14 GET-0.2-2/GET/R/adjusted_envelopes.r | 54 +-- GET-0.2-2/GET/R/adult_trees.r | 2 GET-0.2-2/GET/R/appl_ecdf.r | 8 GET-0.2-2/GET/R/appl_spatialF.r | 6 GET-0.2-2/GET/R/appl_variogram.r | 2 GET-0.2-2/GET/R/combined_envelope_tests.R | 7 GET-0.2-2/GET/R/curve-set.r | 20 - GET-0.2-2/GET/R/deviation_test.r | 4 GET-0.2-2/GET/R/envelopes.r | 86 ++---- GET-0.2-2/GET/R/envelopes2d.r | 26 + GET-0.2-2/GET/R/fboxplot.r | 16 - GET-0.2-2/GET/R/forder.r | 18 - GET-0.2-2/GET/R/glm.R | 71 ++--- GET-0.2-2/GET/R/graphfanova.r | 46 +-- GET-0.2-2/GET/R/imageset3.r | 4 GET-0.2-2/GET/R/plot_envelope_helper.R | 2 GET-0.2-2/GET/R/saplings.r | 34 +- GET-0.2-2/GET/README.md | 21 + GET-0.2-2/GET/build/vignette.rds |binary GET-0.2-2/GET/inst/doc/GET.pdf |binary GET-0.2-2/GET/inst/doc/GET.tex.rsp |only GET-0.2-2/GET/inst/doc/pointpatterns.pdf |binary GET-0.2-2/GET/inst/doc/pointpatterns.tex.rsp |only GET-0.2-2/GET/man/GET-package.Rd | 14 GET-0.2-2/GET/man/GET.composite.Rd | 46 +-- GET-0.2-2/GET/man/GET.necdf.Rd | 8 GET-0.2-2/GET/man/GET.spatialF.Rd | 2 GET-0.2-2/GET/man/GET.variogram.Rd | 2 GET-0.2-2/GET/man/adult_trees.Rd | 2 GET-0.2-2/GET/man/central_region.Rd | 14 GET-0.2-2/GET/man/combined_scaled_MAD_envelope_test.Rd | 7 GET-0.2-2/GET/man/create_curve_set.Rd | 6 GET-0.2-2/GET/man/deviation_test.Rd | 4 GET-0.2-2/GET/man/fBoxplot.Rd | 10 GET-0.2-2/GET/man/forder.Rd | 2 GET-0.2-2/GET/man/frank.fanova.Rd | 6 GET-0.2-2/GET/man/frank.flm.Rd | 18 - GET-0.2-2/GET/man/global_envelope_test.Rd | 59 +--- GET-0.2-2/GET/man/graph.fanova.Rd | 40 +- GET-0.2-2/GET/man/graph.flm.Rd | 53 +-- GET-0.2-2/GET/man/imageset3.Rd | 4 GET-0.2-2/GET/man/partial_forder.Rd | 16 - GET-0.2-2/GET/man/plot.combined_global_envelope2d.Rd | 26 + GET-0.2-2/GET/man/plot.curve_set.Rd | 10 GET-0.2-2/GET/man/plot.fboxplot.Rd | 6 GET-0.2-2/GET/man/plot.global_envelope.Rd | 8 GET-0.2-2/GET/man/qdir_envelope.Rd | 2 GET-0.2-2/GET/man/rank_envelope.Rd | 2 GET-0.2-2/GET/man/saplings.Rd | 34 +- GET-0.2-2/GET/tests/testthat/test-partialforder.R |only GET-0.2-2/GET/vignettes/GET-NOx_data.pdf |only GET-0.2-2/GET/vignettes/GET-abide_9002_23_subj1and27.pdf |only GET-0.2-2/GET/vignettes/GET-adulttrees.pdf |only GET-0.2-2/GET/vignettes/GET-adulttrees_CSR_plot.pdf |only GET-0.2-2/GET/vignettes/GET-flm_frank_abide.pdf |only GET-0.2-2/GET/vignettes/GET-flm_graph_abide.pdf |only GET-0.2-2/GET/vignettes/GET-girls_curves_fig.pdf |only GET-0.2-2/GET/vignettes/GET-girls_fboxplot_plot.pdf |only GET-0.2-2/GET/vignettes/GET-graphfanova_logNOx.pdf |only GET-0.2-2/GET/vignettes/GET-necdfs.pdf |only GET-0.2-2/GET/vignettes/GET-necdfs_means_GET.pdf |only GET-0.2-2/GET/vignettes/GET-normalitytest.pdf |only GET-0.2-2/GET/vignettes/GET-polynomial.pdf |only GET-0.2-2/GET/vignettes/GET.Rnw.orig |only GET-0.2-2/GET/vignettes/GET.tex.rsp |only GET-0.2-2/GET/vignettes/pointpatterns-HC_goodness-of-fit_test.pdf |only GET-0.2-2/GET/vignettes/pointpatterns-combined_test.pdf |only GET-0.2-2/GET/vignettes/pointpatterns-saplings.pdf |only GET-0.2-2/GET/vignettes/pointpatterns-saplings_adjusted_test.pdf |only GET-0.2-2/GET/vignettes/pointpatterns-saplings_csr_L3.pdf |only GET-0.2-2/GET/vignettes/pointpatterns-saplings_matclust4.pdf |only GET-0.2-2/GET/vignettes/pointpatterns-saplings_matclust_J_plot.pdf |only GET-0.2-2/GET/vignettes/pointpatterns-saplings_matclust_L_plot.pdf |only GET-0.2-2/GET/vignettes/pointpatterns-spatialF_bei_F.pdf |only GET-0.2-2/GET/vignettes/pointpatterns-spatialF_bei_S.pdf |only GET-0.2-2/GET/vignettes/pointpatterns-spatialF_forestfires_F.pdf |only GET-0.2-2/GET/vignettes/pointpatterns-spatialF_forestfires_S.pdf |only GET-0.2-2/GET/vignettes/pointpatterns-spruces.pdf |only GET-0.2-2/GET/vignettes/pointpatterns-spruces_csr.pdf |only GET-0.2-2/GET/vignettes/pointpatterns-spruces_csr_crop.pdf |only GET-0.2-2/GET/vignettes/pointpatterns-spruces_mpp.pdf |only GET-0.2-2/GET/vignettes/pointpatterns-spruces_randomlabeling_test.pdf |only GET-0.2-2/GET/vignettes/pointpatterns-workflow_res.pdf |only GET-0.2-2/GET/vignettes/pointpatterns.Rnw.orig |only GET-0.2-2/GET/vignettes/pointpatterns.tex.rsp |only 94 files changed, 471 insertions(+), 528 deletions(-)
Title: Vector Generalized Linear and Additive Models
Description: An implementation of about 6 major classes of
statistical regression models. The central algorithm is
Fisher scoring and iterative reweighted least squares.
At the heart of this package are the vector generalized linear
and additive model (VGLM/VGAM) classes. VGLMs can be loosely
thought of as multivariate GLMs. VGAMs are data-driven
VGLMs that use smoothing. The book "Vector Generalized
Linear and Additive Models: With an Implementation in R"
(Yee, 2015) <DOI:10.1007/978-1-4939-2818-7> gives details of
the statistical framework and the package. Currently only
fixed-effects models are implemented. Many (150+) models and
distributions are estimated by maximum likelihood estimation
(MLE) or penalized MLE. The other classes are RR-VGLMs
(reduced-rank VGLMs), quadratic RR-VGLMs, reduced-rank VGAMs,
RCIMs (row-column interaction models)---these classes perform
constrained and unconstrained quadratic ordination (CQO/UQO)
models in ecology, as well as constrained additive ordination
(CAO). Hauck-Donner effect detection is implemented.
Note that these functions are subject to change;
see the NEWS and ChangeLog files for latest changes.
Author: Thomas Yee [aut, cre],
Cleve Moler [ctb] (author of several LINPACK routines)
Maintainer: Thomas Yee <t.yee@auckland.ac.nz>
Diff between VGAM versions 1.1-4 dated 2020-10-23 and 1.1-5 dated 2021-01-14
VGAM-1.1-4/VGAM/man/bellUC.Rd |only VGAM-1.1-4/VGAM/man/bellff.Rd |only VGAM-1.1-4/VGAM/man/tikuv.Rd |only VGAM-1.1-4/VGAM/man/tikuvUC.Rd |only VGAM-1.1-4/VGAM/man/yip88.Rd |only VGAM-1.1-5/VGAM/DESCRIPTION | 10 VGAM-1.1-5/VGAM/MD5 | 290 ++++++++++----------- VGAM-1.1-5/VGAM/NAMESPACE | 14 - VGAM-1.1-5/VGAM/NEWS | 31 ++ VGAM-1.1-5/VGAM/R/Links.R | 2 VGAM-1.1-5/VGAM/R/aamethods.q | 2 VGAM-1.1-5/VGAM/R/anova.vglm.q | 2 VGAM-1.1-5/VGAM/R/attrassign.R | 2 VGAM-1.1-5/VGAM/R/bAIC.q | 2 VGAM-1.1-5/VGAM/R/build.terms.vlm.q | 2 VGAM-1.1-5/VGAM/R/calibrate.R | 2 VGAM-1.1-5/VGAM/R/cao.R | 2 VGAM-1.1-5/VGAM/R/cao.fit.q | 66 ++-- VGAM-1.1-5/VGAM/R/coef.vlm.q | 2 VGAM-1.1-5/VGAM/R/confint.vlm.R | 2 VGAM-1.1-5/VGAM/R/cqo.R | 2 VGAM-1.1-5/VGAM/R/cqo.fit.q | 2 VGAM-1.1-5/VGAM/R/deviance.vlm.q | 2 VGAM-1.1-5/VGAM/R/effects.vglm.q | 2 VGAM-1.1-5/VGAM/R/family.actuary.R | 2 VGAM-1.1-5/VGAM/R/family.aunivariate.R | 299 +++------------------ VGAM-1.1-5/VGAM/R/family.basics.R | 128 ++++++++- VGAM-1.1-5/VGAM/R/family.binomial.R | 2 VGAM-1.1-5/VGAM/R/family.bivariate.R | 2 VGAM-1.1-5/VGAM/R/family.categorical.R | 16 - VGAM-1.1-5/VGAM/R/family.censored.R | 2 VGAM-1.1-5/VGAM/R/family.circular.R | 331 ++++++++++++++++++++++++ VGAM-1.1-5/VGAM/R/family.exp.R | 2 VGAM-1.1-5/VGAM/R/family.extremes.R | 2 VGAM-1.1-5/VGAM/R/family.functions.R | 2 VGAM-1.1-5/VGAM/R/family.gait.R | 405 ++++++++++++++++++++--------- VGAM-1.1-5/VGAM/R/family.genetic.R | 2 VGAM-1.1-5/VGAM/R/family.glmgam.R | 40 +- VGAM-1.1-5/VGAM/R/family.loglin.R | 2 VGAM-1.1-5/VGAM/R/family.maths.R | 12 VGAM-1.1-5/VGAM/R/family.mixture.R | 2 VGAM-1.1-5/VGAM/R/family.nbd.R | 2 VGAM-1.1-5/VGAM/R/family.nonlinear.R | 2 VGAM-1.1-5/VGAM/R/family.normal.R | 435 +++++++------------------------- VGAM-1.1-5/VGAM/R/family.oneinf.R | 11 VGAM-1.1-5/VGAM/R/family.others.R | 4 VGAM-1.1-5/VGAM/R/family.positive.R | 123 ++++----- VGAM-1.1-5/VGAM/R/family.qreg.R | 2 VGAM-1.1-5/VGAM/R/family.rcim.R | 2 VGAM-1.1-5/VGAM/R/family.rcqo.R | 2 VGAM-1.1-5/VGAM/R/family.robust.R | 2 VGAM-1.1-5/VGAM/R/family.rrr.R | 2 VGAM-1.1-5/VGAM/R/family.sur.R | 2 VGAM-1.1-5/VGAM/R/family.survival.R | 2 VGAM-1.1-5/VGAM/R/family.ts.R | 2 VGAM-1.1-5/VGAM/R/family.univariate.R | 76 ++--- VGAM-1.1-5/VGAM/R/family.vglm.R | 2 VGAM-1.1-5/VGAM/R/family.zeroinf.R | 143 ---------- VGAM-1.1-5/VGAM/R/fittedvlm.R | 2 VGAM-1.1-5/VGAM/R/formula.vlm.q | 2 VGAM-1.1-5/VGAM/R/generic.q | 2 VGAM-1.1-5/VGAM/R/getxvlmaug.R | 2 VGAM-1.1-5/VGAM/R/hdeff.R | 2 VGAM-1.1-5/VGAM/R/links.q | 2 VGAM-1.1-5/VGAM/R/linksold.R | 2 VGAM-1.1-5/VGAM/R/logLik.vlm.q | 2 VGAM-1.1-5/VGAM/R/lrp.R | 2 VGAM-1.1-5/VGAM/R/lrwaldtest.R | 2 VGAM-1.1-5/VGAM/R/model.matrix.vglm.q | 2 VGAM-1.1-5/VGAM/R/mux.q | 2 VGAM-1.1-5/VGAM/R/nobs.R | 2 VGAM-1.1-5/VGAM/R/plot.vgam.R | 2 VGAM-1.1-5/VGAM/R/plot.vglm.R | 128 +++++++++ VGAM-1.1-5/VGAM/R/predict.vgam.q | 2 VGAM-1.1-5/VGAM/R/predict.vglm.q | 2 VGAM-1.1-5/VGAM/R/predict.vlm.q | 2 VGAM-1.1-5/VGAM/R/print.vglm.q | 2 VGAM-1.1-5/VGAM/R/print.vlm.q | 2 VGAM-1.1-5/VGAM/R/psv2magic.R | 2 VGAM-1.1-5/VGAM/R/qrrvglm.control.q | 2 VGAM-1.1-5/VGAM/R/qtplot.q | 8 VGAM-1.1-5/VGAM/R/residuals.vlm.q | 2 VGAM-1.1-5/VGAM/R/rootogram4.vglm.R | 10 VGAM-1.1-5/VGAM/R/rrvglm.R | 10 VGAM-1.1-5/VGAM/R/rrvglm.control.q | 2 VGAM-1.1-5/VGAM/R/rrvglm.fit.q | 2 VGAM-1.1-5/VGAM/R/s.q | 2 VGAM-1.1-5/VGAM/R/s.vam.q | 2 VGAM-1.1-5/VGAM/R/simulate.vglm.R | 2 VGAM-1.1-5/VGAM/R/sm.os.R | 2 VGAM-1.1-5/VGAM/R/sm.ps.R | 2 VGAM-1.1-5/VGAM/R/smart.R | 2 VGAM-1.1-5/VGAM/R/step4.vglm.R | 2 VGAM-1.1-5/VGAM/R/summary.vgam.q | 2 VGAM-1.1-5/VGAM/R/summary.vglm.q | 2 VGAM-1.1-5/VGAM/R/summary.vlm.q | 2 VGAM-1.1-5/VGAM/R/vcov.pvgam.R | 2 VGAM-1.1-5/VGAM/R/vgam.R | 2 VGAM-1.1-5/VGAM/R/vgam.control.q | 2 VGAM-1.1-5/VGAM/R/vgam.fit.q | 15 - VGAM-1.1-5/VGAM/R/vgam.match.q | 6 VGAM-1.1-5/VGAM/R/vglm.R | 2 VGAM-1.1-5/VGAM/R/vglm.control.q | 2 VGAM-1.1-5/VGAM/R/vglm.fit.q | 2 VGAM-1.1-5/VGAM/R/vlm.R | 25 + VGAM-1.1-5/VGAM/R/vlm.wfit.q | 2 VGAM-1.1-5/VGAM/R/vsmooth.spline.q | 2 VGAM-1.1-5/VGAM/R/wald0.R | 2 VGAM-1.1-5/VGAM/build/partial.rdb |binary VGAM-1.1-5/VGAM/man/Trunc.Rd | 2 VGAM-1.1-5/VGAM/man/VGAM-package.Rd | 24 + VGAM-1.1-5/VGAM/man/alteredvglm.Rd | 2 VGAM-1.1-5/VGAM/man/bell.Rd | 4 VGAM-1.1-5/VGAM/man/benfUC.Rd | 13 VGAM-1.1-5/VGAM/man/binom2.orUC.Rd | 3 VGAM-1.1-5/VGAM/man/binom2.rho.Rd | 3 VGAM-1.1-5/VGAM/man/bisa.Rd | 2 VGAM-1.1-5/VGAM/man/constraints.Rd | 3 VGAM-1.1-5/VGAM/man/dgaitplot.Rd | 26 + VGAM-1.1-5/VGAM/man/drop1.Rd | 1 VGAM-1.1-5/VGAM/man/foldnormUC.Rd | 32 +- VGAM-1.1-5/VGAM/man/foldnormal.Rd | 14 - VGAM-1.1-5/VGAM/man/gaitbinomUC.Rd | 2 VGAM-1.1-5/VGAM/man/gaitlog.Rd | 10 VGAM-1.1-5/VGAM/man/gaitlogUC.Rd | 2 VGAM-1.1-5/VGAM/man/gaitnbinomUC.Rd | 2 VGAM-1.1-5/VGAM/man/gaitpoisUC.Rd | 4 VGAM-1.1-5/VGAM/man/gaitpoisson.Rd | 25 + VGAM-1.1-5/VGAM/man/gaitzeta.Rd | 10 VGAM-1.1-5/VGAM/man/gaitzetaUC.Rd | 2 VGAM-1.1-5/VGAM/man/genpois1UC.Rd | 24 - VGAM-1.1-5/VGAM/man/iam.Rd | 9 VGAM-1.1-5/VGAM/man/logff.Rd | 38 ++ VGAM-1.1-5/VGAM/man/meangait.Rd |only VGAM-1.1-5/VGAM/man/model.matrixvlm.Rd | 1 VGAM-1.1-5/VGAM/man/notdocumentedyet.Rd | 2 VGAM-1.1-5/VGAM/man/plotrcim0.Rd | 11 VGAM-1.1-5/VGAM/man/specialsvglm.Rd | 2 VGAM-1.1-5/VGAM/man/spikeplot.Rd |only VGAM-1.1-5/VGAM/man/step4vglm.Rd | 1 VGAM-1.1-5/VGAM/man/trim.constraints.Rd |only VGAM-1.1-5/VGAM/man/vglm.Rd | 31 +- VGAM-1.1-5/VGAM/man/zabinomial.Rd | 1 VGAM-1.1-5/VGAM/man/zageometric.Rd | 1 VGAM-1.1-5/VGAM/man/zanegbinomial.Rd | 1 VGAM-1.1-5/VGAM/man/zapoisson.Rd | 7 VGAM-1.1-5/VGAM/man/zibinomial.Rd | 1 VGAM-1.1-5/VGAM/man/zigeometric.Rd | 1 VGAM-1.1-5/VGAM/man/zinegbinomial.Rd | 1 VGAM-1.1-5/VGAM/man/zipoisson.Rd | 7 150 files changed, 1712 insertions(+), 1405 deletions(-)
Title: Refining Evaluation Methodology on Stage System
Description: T (extent of the primary tumor), N (absence or presence and extent of regional lymph node metastasis) and M (absence or presence of distant metastasis) are three components to describe the anatomical tumor extent. TNM stage is important in treatment decision-making and outcome predicting. The existing oropharyngeal Cancer (OPC) TNM stages have not made distinction of the two sub sites of Human papillomavirus positive (HPV+) and Human papillomavirus negative (HPV-) diseases. We developed novel criteria to assess performance of the TNM stage grouping schemes based on parametric modeling adjusting on important clinical factors. These criteria evaluate the TNM stage grouping scheme in five different measures: hazard consistency, hazard discrimination, explained variation, likelihood difference, and balance. The methods are described in Xu, W., et al. (2015) <https://www.austinpublishinggroup.com/biometrics/fulltext/biometrics-v2-id1014.php>.
Author: Wei Xu [aut],
Susie Su [aut],
Yi Zhu [cre]
Maintainer: Yi Zhu <yizhu87@gmail.com>
Diff between remss versions 1.0.0 dated 2019-11-20 and 1.0.1 dated 2021-01-14
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- R/balance_measure.R | 2 +- R/explain_var_measure.R | 4 ++-- R/hz_cons_measure.R | 2 +- R/hz_dis_measure.R | 2 +- R/lik_diff_measure.R | 2 +- R/overall_rank.R | 18 +++++++++--------- R/rank.R | 14 +++++++------- inst/doc/remss.html | 4 ++-- 10 files changed, 36 insertions(+), 36 deletions(-)
Title: Embedded Conic Solver in R
Description: R interface to the Embedded COnic Solver (ECOS), an efficient
and robust C library for convex problems. Conic and equality
constraints can be specified in addition to integer and
boolean variable constraints for mixed-integer problems. This
R interface is inspired by the python interface and has
similar calling conventions.
Author: Anqi Fu [aut],
Balasubramanian Narasimhan [aut, cre],
Florian Schwendinger [ctb],
Martin Maechler [ctb]
Maintainer: Balasubramanian Narasimhan <naras@stat.Stanford.EDU>
Diff between ECOSolveR versions 0.5.3 dated 2019-11-06 and 0.5.4 dated 2021-01-14
DESCRIPTION | 21 + MD5 | 26 +- NAMESPACE | 1 NEWS.md | 5 R/ecos.R | 9 README.md | 20 - build/vignette.rds |binary inst/doc/examples.R | 16 - inst/doc/examples.Rmd | 2 inst/doc/examples.html | 621 +++++++++++++++++-------------------------------- man/ECOS_csolve.Rd | 20 + man/ECOSolveR.Rd | 1 man/ecos.control.Rd | 18 + vignettes/examples.Rmd | 2 14 files changed, 309 insertions(+), 453 deletions(-)
Title: Required 'libphonenumber' jars for the 'dialr' Package
Description: Collects 'libphonenumber' jars required for the
'dialr' package.
Author: Danny Smith [aut, cre],
Google Inc. [ctb, cph] (libphonenumber),
Vonage Holdings Corp. [ctb, cph] (libphonenumber),
Ian Galpin [ctb, cph] (libphonenumber),
Ben Gertzfield [ctb, cph] (libphonenumber)
Maintainer: Danny Smith <danny@gorcha.org>
Diff between dialrjars versions 8.12.6 dated 2020-07-17 and 8.12.16 dated 2021-01-14
dialrjars-8.12.16/dialrjars/DESCRIPTION | 10 ++--- dialrjars-8.12.16/dialrjars/MD5 | 20 +++++----- dialrjars-8.12.16/dialrjars/NEWS.md | 20 ++++++++++ dialrjars-8.12.16/dialrjars/README.md | 2 - dialrjars-8.12.16/dialrjars/inst/COPYRIGHTS | 2 - dialrjars-8.12.16/dialrjars/inst/java/carrier-1.142.jar |only dialrjars-8.12.16/dialrjars/inst/java/geocoder-2.152.jar |only dialrjars-8.12.16/dialrjars/inst/java/libphonenumber-8.12.16.jar |only dialrjars-8.12.16/dialrjars/inst/java/prefixmapper-2.152.jar |only dialrjars-8.12.16/dialrjars/java/README | 2 - dialrjars-8.12.16/dialrjars/man/dialrjars-package.Rd | 2 - dialrjars-8.12.6/dialrjars/inst/java/carrier-1.132.jar |only dialrjars-8.12.6/dialrjars/inst/java/geocoder-2.142.jar |only dialrjars-8.12.6/dialrjars/inst/java/libphonenumber-8.12.6.jar |only dialrjars-8.12.6/dialrjars/inst/java/prefixmapper-2.142.jar |only 15 files changed, 39 insertions(+), 19 deletions(-)
Title: Utilities for Sampling
Description: Interactive tools for generating random samples. Users select an
.xlsx, .csv, or delimited .txt file with population data and are walked through selecting the
sample type (Simple Random Sample or Stratified), the number of backups
desired, and a "stratify_on" value (if desired). The sample size is determined
using a normal approximation to the hypergeometric distribution based on
Nicholson (1956) <doi:10.1214/aoms/1177728270>. An .xlsx file is created
with the sample and key metadata for reference. It is menu-driven and lets
users pick an output directory. See vignettes for a detailed walk-through.
Author: Paul West [aut, cre]
Maintainer: Paul West <fp8049@gmail.com>
Diff between whSample versions 0.9.2 dated 2020-09-02 and 0.9.4 dated 2021-01-14
DESCRIPTION | 11 ++--- MD5 | 22 +++++----- NAMESPACE | 1 R/sampler.R | 31 ++++++++------ README.md | 25 ++++++++--- build/vignette.rds |binary inst/doc/Using_sampler.R | 2 inst/doc/Using_sampler.Rmd | 21 +++++---- inst/doc/Using_sampler.html | 93 +++++++++++++++++++++++++++++++++++++++----- inst/doc/Using_ssize.html | 72 ++++++++++++++++++++++++++++++++++ man/sampler.Rd | 2 vignettes/Using_sampler.Rmd | 21 +++++---- 12 files changed, 237 insertions(+), 64 deletions(-)
Title: FDR Power
Description: This is a package for calculating two differing notions of power, or deriving sample
sizes for specified requisite power in multiple testing experiments under a variety of methods for
control of the distribution of the False Discovery Proportion (FDP). More specifically, one can
choose to control the FDP distribution according to control of its (i) mean, e.g. the usual BH-FDR
procedure, or via the probability that it exceeds a given value, delta, via (ii) the Romano
procedure, or via (iii) my procedure based upon asymptotic approximation. Likewise, we can think of
the power in multiple testing experiments in terms of a summary of the distribution of the
True Positive Proportion (TPP). The package will compute power, sample size or any other missing
parameter required for power based upon (i) the mean of the TPP which is the average power
(ii) the probability that the TPP exceeds a given value, lambda, via my asymptotic approximation
procedure. The theoretical results are described in Izmirlian, G. (2020) Stat. and Prob. letters,
<doi:10.1016/j.spl.2020.108713>, and an applied paper describing the methodology with a
simulation study is in preparation.
Author: Grant Izmirlian Jr <izmirlig@mail.nih.gov>
Maintainer: Grant Izmirlian Jr <izmirlig@mail.nih.gov>
Diff between pwrFDR versions 2.8.6 dated 2020-11-03 and 2.8.7 dated 2021-01-14
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/pwrFDR.R | 26 +++++++++++++++++++------- man/Ch01-pwrFDR.Rd | 8 ++++++-- man/Ch02-pwrFDR-grid.Rd | 30 +++++++++++++++++++++++++++++- 5 files changed, 61 insertions(+), 17 deletions(-)
Title: Statistical Inference and Sensitivity Analysis for Instrumental
Variables Model
Description: Carries out instrumental variable
estimation of causal effects, including power analysis, sensitivity analysis,
and diagnostics. See Kang, Jiang, Zhao, and Small (2020) <http://pages.cs.wisc.edu/~hyunseung/> for details.
Author: Hyunseung Kang, Yang Jiang, Qingyuan Zhao, and Dylan Small
Maintainer: Hyunseung Kang <hyunseung@stat.wisc.edu>
Diff between ivmodel versions 1.8.1 dated 2020-02-20 and 1.9.0 dated 2021-01-14
DESCRIPTION | 9 + LICENSE | 2 MD5 | 69 ++++++++++---- NAMESPACE | 6 - R/KClass.r | 163 +++++++++++++++++++++------------- R/balanceLovePlot.R |only R/biasLovePlot.R |only R/coefOther.r |only R/distributionBalancePlot.R |only R/fitted.ivmodel.r | 33 +----- R/getCovMeanDiffs.R |only R/getMD.R |only R/getStandardizedCovMeanDiffs.R |only R/internalFuncBransonKeele.r |only R/ivmodel.r | 28 ++++- R/ivmodelFormula.r | 5 - R/para.r | 30 +++--- R/permTest.absBias.R |only R/permTest.md.R |only R/residuals.ivmodel.r | 2 R/vcov.ivmodel.r | 3 R/vcovOther.r |only README.md | 15 ++- build/partial.rdb |binary data/icu.data.rda |only man/KClass.Rd | 2 man/balanceLovePlot.Rd |only man/biasLovePlot.Rd |only man/coefOther.Rd |only man/distributionBalancePlot.Rd |only man/fitted.ivmodel.Rd | 7 + man/getCovMeanDiffs.Rd |only man/getMD.Rd |only man/getStandardizedCovMeanDiffs.Rd |only man/icu.data.Rd |only man/ivmodel-bransonKeele-internal.Rd |only man/ivmodel-package.Rd | 62 ++++++------ man/ivmodel.Rd | 31 ++++-- man/ivmodelFormula.Rd | 167 +++++++++++++++++++---------------- man/permTest.absBias.Rd |only man/permTest.md.Rd |only man/residuals.ivmodel.Rd | 2 man/vcov.ivmodel.Rd | 2 man/vcovOther.Rd |only tests |only 45 files changed, 377 insertions(+), 261 deletions(-)
Title: Toolkit for Data Analytics in Human Resources
Description: Transform and analyze workforce data in meaningful ways for human resources (HR) analytics. Get started with workforce planning using a simple Shiny app.
Author: Dale Kube [aut, cre]
Maintainer: Dale Kube <dkube@uwalumni.com>
Diff between hR versions 0.2.41 dated 2020-11-09 and 0.2.50 dated 2021-01-14
DESCRIPTION | 6 MD5 | 8 inst/doc/hR.html | 4 inst/workforcePlanApp/app.R | 340 +++++----- inst/workforcePlanApp/rsconnect/shinyapps.io/dalekube/workforcePlanApp.dcf | 4 5 files changed, 194 insertions(+), 168 deletions(-)
Title: Data Sets for Psychometric Modeling
Description: Collection of data sets from various assessments that can be used to
evaluate psychometric models. These data sets have been analyzed in the
following papers that introduced new methodology as part of the application section:
Chen, Y., Culpepper, S. A., & Liang, F. (2020) <doi:10.1007/s11336-019-09693-2>
Culpepper, S. A. (2019a) <doi:10.1007/s11336-019-09683-4>,
Culpepper, S. A. (2019b) <doi:10.1007/s11336-018-9643-8>,
Culpepper, S. A., & Chen, Y. (2019) <doi:10.3102/1076998618791306>,
Culpepper, S. A., & Balamuta, J. J. (2017) <doi:10.1007/s11336-015-9484-7>,
and Culpepper, S. A. (2015) <doi:10.3102/1076998615595403>.
Author: James Joseph Balamuta [aut, cre, cph]
(<https://orcid.org/0000-0003-2826-8458>),
Steven Andrew Culpepper [aut, cph]
(<https://orcid.org/0000-0003-4226-6176>),
Jeffrey Alan Douglas [aut, cph]
Maintainer: James Joseph Balamuta <balamut2@illinois.edu>
Diff between edmdata versions 1.0.0 dated 2020-08-17 and 1.1.0 dated 2021-01-14
DESCRIPTION | 6 ++-- MD5 | 34 ++++++++++++------------ NEWS.md | 14 +++++++++ R/qmatrix-oracle-data.R | 3 +- README.md | 1 build |only data/qmatrix_oracle_k2_j12.rda |only data/qmatrix_oracle_k5_j30.rda |binary man/items_ecpe.Rd | 10 +++---- man/items_fractions.Rd | 10 +++---- man/items_matrix_reasoning.Rd | 2 - man/items_narcissistic_personality_inventory.Rd | 2 - man/items_ordered_eclsk_atl.Rd | 2 - man/items_revised_psvtr.Rd | 6 ++-- man/items_spm_ls.Rd | 6 ++-- man/items_taylor_manifest_anxiety_scale.Rd | 2 - man/qmatrix_ecpe.Rd | 6 ++-- man/qmatrix_fractions.Rd | 10 +++---- man/qmatrix_oracle.Rd | 2 + 19 files changed, 68 insertions(+), 48 deletions(-)