Title: Simulate Admixture of Genomes
Description: Individual-based simulations forward in time, simulating how patterns in ancestry along the genome change after admixture. Full description can be found in Janzen (2020) <doi:10.1101/2020.10.19.343491>.
Author: Thijs Janzen [aut, cre],
Fernando Diaz G. [ctb],
Richèl J.C. Bilderbeek [ctb]
Maintainer: Thijs Janzen <thijsjanzen@gmail.com>
Diff between GenomeAdmixR versions 1.1.2 dated 2021-01-21 and 1.1.3 dated 2021-01-24
DESCRIPTION | 6 +-- MD5 | 42 +++++++++++----------- R/calculate_marker_frequency.R | 2 - inst/doc/Demonstrate_isofemales.html | 8 ++-- inst/doc/Joyplots.html | 8 ++-- inst/doc/Visualization.html | 14 +++---- inst/doc/Walkthrough.html | 32 ++++++++--------- man/calculate_marker_frequency.Rd | 2 - src/helper_functions.cpp | 4 ++ src/simulate_migration.cpp | 46 ++++++++++--------------- tests/testthat/test-LD.R | 10 +++-- tests/testthat/test-allele_frequencies.R | 3 + tests/testthat/test-fst.R | 11 +---- tests/testthat/test-isoFemales.R | 6 +++ tests/testthat/test-joyplot.R | 2 + tests/testthat/test-junctions.R | 2 + tests/testthat/test-save_load.R | 2 + tests/testthat/test-selection.R | 15 +++++--- tests/testthat/test-simulate_admixture.R | 12 +++++- tests/testthat/test-simulate_admixture_until.R | 3 + tests/testthat/test-simulate_migration.R | 4 ++ tests/testthat/test-utilities.R | 15 +++++++- 22 files changed, 142 insertions(+), 107 deletions(-)
Title: Forest Mensuration and Management
Description: Processing forest inventory data with methods such as simple random sampling, stratified random sampling and systematic sampling. There are also functions for yield and growth predictions and model fitting, linear and nonlinear grouped data fitting, and statistical tests. References: Kershaw Jr., Ducey, Beers and Husch (2016). <doi:10.1002/9781118902028>.
Author: Sollano Rabelo Braga [aut, cre, cph],
Marcio Leles Romarco de Oliveira [aut],
Eric Bastos Gorgens [aut]
Maintainer: Sollano Rabelo Braga <sollanorb@gmail.com>
Diff between forestmangr versions 0.9.2 dated 2020-04-07 and 0.9.3 dated 2021-01-24
DESCRIPTION | 13 MD5 | 70 - NAMESPACE | 2 NEWS.md | 23 R/classify_site.R | 2 R/dom_height.R | 4 R/fit_clutter.R | 6 R/guide_curve.R | 6 R/lm_resid.R |only R/lm_resid_group.R |only R/plot_summarise.R | 2 R/smalianwb.R | 2 R/smalianwob.R | 2 R/sprs.R | 4 R/ss_diffs.R | 2 R/strs.R | 2 R/tree_summarise.R | 4 README.md | 4 build/vignette.rds |binary inst/doc/eq_group_fit_en.html | 87 ++ inst/doc/eq_group_fit_ptbr.html | 87 ++ inst/doc/invent_vol_plot_en.html | 64 + inst/doc/invent_vol_plot_ptbr.html | 64 + inst/doc/phyto_ana_en.html | 128 ++- inst/doc/phyto_ana_ptbr.html | 128 ++- inst/doc/sampling_en.Rmd | 2 inst/doc/sampling_en.html | 1379 ++++++++++++++++++++----------------- inst/doc/sampling_ptbr.Rmd | 2 inst/doc/sampling_ptbr.html | 1189 +++++++++++++++++-------------- inst/doc/volume_est_en.html | 101 ++ inst/doc/volume_est_ptbr.html | 66 + inst/doc/yield_growth_en.html | 64 + inst/doc/yield_growth_ptbr.html | 64 + man/lm_resid.Rd |only man/lm_resid_group.Rd |only man/strs.Rd | 2 vignettes/sampling_en.Rmd | 2 vignettes/sampling_ptbr.Rmd | 2 38 files changed, 2250 insertions(+), 1329 deletions(-)
Title: Estimation of Parameter-Dependent Network Centrality Measures
Description: Provides methods for estimating parameter-dependent network centrality measures with linear-in-means models. Both non linear least squares and maximum likelihood estimators are implemented. The methods allow for both link and node heterogeneity in network effects, endogenous network formation and the presence of unconnected nodes. The routines also compare the explanatory power of parameter-dependent network centrality measures with those of standard measures of network centrality. Benefits and features of the 'econet' package are illustrated using data from Battaglini and Patacchini (2018) and Battaglini, Patacchini, and Leone Sciabolazza (2020). For additional details, see the vignette.
Author: Marco Battaglini [aut] (<https://orcid.org/0000-0001-9690-0721>),
Valerio Leone Sciabolazza [aut, cre]
(<https://orcid.org/0000-0003-2537-3084>),
Eleonora Patacchini [aut] (<https://orcid.org/0000-0002-3510-2969>),
Sida Peng [aut] (<https://orcid.org/0000-0002-2151-0523>)
Maintainer: Valerio Leone Sciabolazza <valerio.leonesciabolazza@uniparthenope.it>
Diff between econet versions 0.1.92 dated 2020-09-02 and 0.1.93 dated 2021-01-24
DESCRIPTION | 12 +-- MD5 | 34 +++++---- NAMESPACE | 2 R/boot.R | 123 +++++++++++++++++++++++++++++++++-- R/check_entries.R | 150 ++++++++++++++++++++++++++++++++++++------- R/create_dyadic_db_no_excl.R |only R/formula.R | 8 +- R/globals.R | 3 R/horse_race.R | 26 +++++-- R/mle_prepare_data.R | 2 R/net_dep.R | 106 ++++++++++++++++++++++++++---- R/nls_constrained.R |only R/sample_data.R | 13 +++ inst/doc/econet.pdf |binary man/boot.Rd | 6 + man/horse_race.Rd | 16 +++- man/net_dep.Rd | 13 ++- vignettes/econet.tex | 13 +-- vignettes/econet_refs.bib | 4 - 19 files changed, 436 insertions(+), 95 deletions(-)
Title: A Lightweight Core of the 'assertive' Package
Description: A minimal set of predicates and assertions used by the assertive
package. This is mainly for use by other package developers who want to
include run-time testing features in their own packages. End-users will
usually want to use assertive directly.
Author: Richard Cotton [aut, cre],
Sunkyu Choi [trl],
Ivanka Skakun [trl],
Gergely Dar<c3><b3>czi [trl],
Anton Antonov [trl],
Hisham Ben Hamidane [trl],
Anja Billing [trl],
Aditya Bhagwat [trl],
Rasmus B<c3><a5><c3><a5>th [trl],
Mine Cetinkaya-Rundel [trl],
Aspasia Chatziefthymiou [trl]
Maintainer: Richard Cotton <richierocks@gmail.com>
Diff between assertive.base versions 0.0-7 dated 2016-12-29 and 0.0-8 dated 2021-01-24
DESCRIPTION | 34 +- MD5 | 59 ++-- NEWS | 41 +- R/conditions.R | 157 +++++------ R/engine.R | 294 ++++++++++---------- README.md | 196 ++++++------- man/Truth.Rd | 71 ++--- man/are_identical.Rd | 20 - man/assert_engine.Rd | 12 man/assertionError.Rd | 3 man/bapply.Rd | 1 man/call_and_name.Rd | 1 man/cause.Rd | 1 man/coerce_to.Rd | 1 man/dont_stop.Rd | 1 man/false.Rd | 1 man/get_name_in_parent.Rd | 1 man/is2.Rd | 1 man/merge.list.Rd | 4 man/merge_dots_with_list.Rd | 9 man/na.Rd | 1 man/parenthesize.Rd | 19 - man/print.vector_with_cause.Rd | 1 man/print_and_capture.Rd | 3 man/safe_deparse.Rd | 1 man/set_cause.Rd | 1 man/strip_attributes.Rd | 1 man/use_first.Rd | 1 po/R-assertive.base.pot | 37 +- tests/testthat/test-utils.R | 494 +++++++++++++++++------------------ tests/testthat/testthat-problems.rds |only 31 files changed, 745 insertions(+), 722 deletions(-)
More information about assertive.base at CRAN
Permanent link
Title: Create FAQ Page
Description: Create Frequently Asked Questions page for Shiny application.
Author: Jiena McLellan [aut, cre] (<https://orcid.org/0000-0002-5578-088X>),
Michael Condouris [ctb] (<https://orcid.org/0000-0002-8862-4250>),
Alex Lais [ctb],
Jason Forrest [ctb],
Gunvansh Khanna [ctb]
Maintainer: Jiena McLellan <jienagu90@gmail.com>
Diff between faq versions 0.1.0 dated 2020-07-30 and 0.1.1 dated 2021-01-24
DESCRIPTION | 16 ++++----- MD5 | 13 ++++--- NEWS.md |only R/faq.R | 13 ++++++- README.md | 39 +++++++++++++++++------ inst/doc/Intro-faq.html | 81 +++++++++++++++++++++++++++++++++++++++++++----- inst/htmlwidgets/faq.js | 11 +++--- man/faq.Rd | 11 +++++- 8 files changed, 143 insertions(+), 41 deletions(-)
Title: Base de Datos de Facil Acceso del Censo 2017 de Chile (2017
Chilean Census Easy Access Database)
Description: Provee un acceso conveniente a mas de 17 millones de registros
de la base de datos del Censo 2017. Los datos fueron importados desde
el DVD oficial del INE usando el Convertidor REDATAM creado por Pablo De
Grande y ademas se proporcionan los mapas que acompanian a estos
datos. Esta paquete esta documentado intencionalmente en castellano
asciificado para que funcione sin problema en diferentes plataformas.
(Provides convenient access to more than 17 million records from the
Chilean Census 2017 database. The datasets were imported from the official
DVD provided by the Chilean National Bureau of Statistics by using the
REDATAM converter created by Pablo De Grande and in addition it includes the
maps accompanying these datasets.)
Author: Mauricio Vargas [aut, cre] (<https://orcid.org/0000-0003-1017-7574>),
Juan Correa [ctb],
Instituto Nacional de Estadisticas (INE) [dtc]
Maintainer: Mauricio Vargas <mvargas@dcc.uchile.cl>
Diff between censo2017 versions 0.2 dated 2020-12-16 and 0.3 dated 2021-01-24
censo2017-0.2/censo2017/README.md |only censo2017-0.3/censo2017/DESCRIPTION | 18 +++---- censo2017-0.3/censo2017/MD5 | 19 +++---- censo2017-0.3/censo2017/NAMESPACE | 1 censo2017-0.3/censo2017/NEWS.md | 8 ++- censo2017-0.3/censo2017/R/connect.R | 41 +++++++--------- censo2017-0.3/censo2017/R/download.R | 20 +++---- censo2017-0.3/censo2017/R/zzz.R | 13 +++++ censo2017-0.3/censo2017/man/censo_bbdd.Rd | 2 censo2017-0.3/censo2017/man/censo_descargar_base.Rd | 8 +-- censo2017-0.3/censo2017/tests/testthat/test-02-tables.R | 4 - 11 files changed, 72 insertions(+), 62 deletions(-)
Title: Transforming and Harmonizing CCHS Variables
Description: Supporting the use of the Canadian Community Health Survey
(CCHS) by transforming variables from each cycle into harmonized,
consistent versions that span survey cycles (currently, 2001 to
2014). CCHS data used in this library is accessed and adapted in
accordance to the Statistics Canada Open Licence Agreement. This
package uses rec_with_table(), which was developed from 'sjmisc'
rec(). Lüdecke D (2018). "sjmisc: Data and Variable Transformation
Functions". Journal of Open Source Software, 3(26), 754.
<doi:10.21105/joss.00754>.
Author: Doug Manuel [aut, cph] (<https://orcid.org/0000-0003-0912-0845>),
Warsame Yusuf [aut, cre],
Rostyslav Vyuha [aut],
Carol Bennett [aut],
Yulric Sequeira [ctb],
The Ottawa Hospital [cph]
Maintainer: Warsame Yusuf <waryusuf@ohri.ca>
Diff between cchsflow versions 1.6.0 dated 2020-03-30 and 1.8.0 dated 2021-01-24
cchsflow-1.6.0/cchsflow/R/multiple-conditions.R |only cchsflow-1.6.0/cchsflow/tests/testthat/test-multiple-conditions.R |only cchsflow-1.8.0/cchsflow/DESCRIPTION | 10 cchsflow-1.8.0/cchsflow/MD5 | 111 cchsflow-1.8.0/cchsflow/NAMESPACE | 12 cchsflow-1.8.0/cchsflow/NEWS.md | 113 cchsflow-1.8.0/cchsflow/R/adl.R | 110 cchsflow-1.8.0/cchsflow/R/age-categorical.R | 3 cchsflow-1.8.0/cchsflow/R/bmi.R | 4 cchsflow-1.8.0/cchsflow/R/data.R | 20 cchsflow-1.8.0/cchsflow/R/depression.R |only cchsflow-1.8.0/cchsflow/R/diet.R |only cchsflow-1.8.0/cchsflow/R/label-utils.R | 2 cchsflow-1.8.0/cchsflow/R/merge-data.R |only cchsflow-1.8.0/cchsflow/R/number-conditions.R |only cchsflow-1.8.0/cchsflow/R/occupation.R |only cchsflow-1.8.0/cchsflow/R/percent-time-canada.R | 6 cchsflow-1.8.0/cchsflow/R/recode-with-table.R | 227 cchsflow-1.8.0/cchsflow/R/respiratory-condition.R | 350 - cchsflow-1.8.0/cchsflow/R/smoking.R | 271 cchsflow-1.8.0/cchsflow/R/utility-functions.R | 2 cchsflow-1.8.0/cchsflow/README.md | 4 cchsflow-1.8.0/cchsflow/data/variable_details.RData |binary cchsflow-1.8.0/cchsflow/data/variables.RData |binary cchsflow-1.8.0/cchsflow/inst/extdata/sample_variable_details.csv | 8 cchsflow-1.8.0/cchsflow/inst/extdata/variable_details.csv | 2927 +++++----- cchsflow-1.8.0/cchsflow/inst/extdata/variables.csv | 360 - cchsflow-1.8.0/cchsflow/man/COPD_Emph_der_fun1.Rd |only cchsflow-1.8.0/cchsflow/man/COPD_Emph_der_fun2.Rd |only cchsflow-1.8.0/cchsflow/man/DPSDPP.Rd |only cchsflow-1.8.0/cchsflow/man/DPSDSF.Rd |only cchsflow-1.8.0/cchsflow/man/LBFA_31A.Rd |only cchsflow-1.8.0/cchsflow/man/LBFA_31A_a.Rd |only cchsflow-1.8.0/cchsflow/man/LBFA_31A_b.Rd |only cchsflow-1.8.0/cchsflow/man/adl_fun.Rd | 4 cchsflow-1.8.0/cchsflow/man/adl_score_5_fun.Rd |only cchsflow-1.8.0/cchsflow/man/bmi_fun.Rd | 4 cchsflow-1.8.0/cchsflow/man/cchs2001_p.Rd | 2 cchsflow-1.8.0/cchsflow/man/cchs2003_p.Rd | 2 cchsflow-1.8.0/cchsflow/man/cchs2005_p.Rd | 2 cchsflow-1.8.0/cchsflow/man/cchs2007_2008_p.Rd | 2 cchsflow-1.8.0/cchsflow/man/cchs2009_2010_p.Rd | 2 cchsflow-1.8.0/cchsflow/man/cchs2010_p.Rd | 2 cchsflow-1.8.0/cchsflow/man/cchs2011_2012_p.Rd | 2 cchsflow-1.8.0/cchsflow/man/cchs2012_p.Rd | 2 cchsflow-1.8.0/cchsflow/man/cchs2013_2014_p.Rd | 2 cchsflow-1.8.0/cchsflow/man/cchs2014_p.Rd | 2 cchsflow-1.8.0/cchsflow/man/diet_score_fun.Rd |only cchsflow-1.8.0/cchsflow/man/get_data_variable_name.Rd | 2 cchsflow-1.8.0/cchsflow/man/merge_rec_data.Rd |only cchsflow-1.8.0/cchsflow/man/multiple_conditions_fun1.Rd | 8 cchsflow-1.8.0/cchsflow/man/multiple_conditions_fun2.Rd | 8 cchsflow-1.8.0/cchsflow/man/pack_years_fun.Rd | 23 cchsflow-1.8.0/cchsflow/man/pct_time_fun.Rd | 6 cchsflow-1.8.0/cchsflow/man/rec_with_table.Rd | 10 cchsflow-1.8.0/cchsflow/man/recode_variable_NA_formating.Rd |only cchsflow-1.8.0/cchsflow/man/resp_condition_fun1.Rd | 7 cchsflow-1.8.0/cchsflow/man/resp_condition_fun2.Rd | 6 cchsflow-1.8.0/cchsflow/man/resp_condition_fun3.Rd | 6 cchsflow-1.8.0/cchsflow/man/smoke_simple_fun.Rd |only cchsflow-1.8.0/cchsflow/man/time_quit_smoking_fun.Rd |only cchsflow-1.8.0/cchsflow/tests/testdata/rec_with_table_test_data.RData |binary cchsflow-1.8.0/cchsflow/tests/testthat/test-adl.R | 24 cchsflow-1.8.0/cchsflow/tests/testthat/test-age-categorical.R | 2 cchsflow-1.8.0/cchsflow/tests/testthat/test-number-conditions.R |only cchsflow-1.8.0/cchsflow/tests/testthat/test-respiratory-condition.R | 38 cchsflow-1.8.0/cchsflow/tests/testthat/test-smoking.R | 40 67 files changed, 2927 insertions(+), 1821 deletions(-)
Title: Manage Data from Stock Exchange Markets
Description: Tools to perform some descriptive data analysis for assets. Manage the portfolio and capital of assets. It also downloads and organizes data from the Tehran Stock Exchange (TSE).
Author: Ali Saeb
Maintainer: Ali Saeb <ali.saeb@gmail.com>
Diff between TSEtools versions 0.1.4 dated 2020-01-07 and 0.2.0 dated 2021-01-24
DESCRIPTION | 12 ++++++------ MD5 | 16 ++++++++++------ NAMESPACE | 5 +++-- R/capm.R |only R/getTSE.R | 4 ++-- R/prtf.R |only README.md | 12 ++++++++---- inst/extdata/sample.csv | 1 - man/capm.Rd |only man/getTSE.Rd | 4 ++-- man/prtf.Rd |only 11 files changed, 31 insertions(+), 23 deletions(-)
Title: Syntactically Awesome Style Sheets ('Sass')
Description: An 'SCSS' compiler, powered by the 'LibSass' library. With this,
R developers can use variables, inheritance, and functions to generate
dynamic style sheets. The package uses the 'Sass CSS' extension language,
which is stable, powerful, and CSS compatible.
Author: Joe Cheng [aut],
Timothy Mastny [aut],
Richard Iannone [aut] (<https://orcid.org/0000-0003-3925-190X>),
Barret Schloerke [aut] (<https://orcid.org/0000-0001-9986-114X>),
Carson Sievert [aut, cre] (<https://orcid.org/0000-0002-4958-2844>),
RStudio [cph, fnd],
Sass Open Source Foundation [ctb, cph] (LibSass library),
Greter Marcel [ctb, cph] (LibSass library),
Mifsud Michael [ctb, cph] (LibSass library),
Hampton Catlin [ctb, cph] (LibSass library),
Natalie Weizenbaum [ctb, cph] (LibSass library),
Chris Eppstein [ctb, cph] (LibSass library),
Adams Joseph [ctb, cph] (json.cpp),
Trifunovic Nemanja [ctb, cph] (utf8.h)
Maintainer: Carson Sievert <carson@rstudio.com>
Diff between sass versions 0.3.0 dated 2021-01-13 and 0.3.1 dated 2021-01-24
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/sass_cache.R | 18 ++++++++++++++++-- inst/doc/sass.html | 28 ++++++++++++++-------------- man/sass_cache_get.Rd | 3 ++- 6 files changed, 44 insertions(+), 25 deletions(-)
Title: NHANES Data Retrieval
Description: Utility to retrieve data from the National Health and Nutrition
Examination Survey (NHANES) website <https://www.cdc.gov/nchs/nhanes/index.htm>.
Author: Christopher J. Endres
Maintainer: Christopher J. Endres <cjendres1@gmail.com>
Diff between nhanesA versions 0.6.5 dated 2018-10-17 and 0.6.5.2 dated 2021-01-24
DESCRIPTION | 11 - MD5 | 28 +- NAMESPACE | 1 R/nhanes.R | 18 + build/vignette.rds |binary inst/doc/Introducing_nhanesA.R | 24 +- inst/doc/Introducing_nhanesA.Rmd | 6 inst/doc/Introducing_nhanesA.html | 371 ++++++++++++++++++++++---------------- man/nhanesSearch.Rd | 14 + man/nhanesSearchTableNames.Rd | 10 - man/nhanesSearchVarName.Rd | 10 - man/nhanesTableVars.Rd | 9 man/nhanesTables.Rd | 10 - man/nhanesTranslate.Rd | 17 + vignettes/Introducing_nhanesA.Rmd | 6 15 files changed, 326 insertions(+), 209 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-12-18 0.1.0.1
2019-07-12 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-08 0.1.3
2020-03-01 0.1.2
2019-07-11 0.1.1
Title: Fitting Semi-Parametric Generalized log-Gamma Regression Models
Description: Set of tools to fit a linear multiple or semi-parametric regression
models with the possibility of non-informative random right-censoring. Under this setup, the localization parameter of the response variable distribution is modeled by using linear multiple regression
or semi-parametric functions, whose non-parametric components may be approximated
by natural cubic spline or P-splines. The supported distribution for the model error is a generalized log-gamma distribution which includes
the generalized extreme value and standard normal distributions as important special cases. Also, some numerical and graphical devices for diagnostic of the fitted models are offered.
Author: Carlos Alberto Cardozo Delgado <cardozorpackages@gmail.com> and G. Paula and L. Vanegas
Maintainer: Carlos Alberto Cardozo Delgado <cardozorpackages@gmail.com>
Diff between sglg versions 0.1.8 dated 2020-11-30 and 0.1.9 dated 2021-01-24
DESCRIPTION | 10 ++-- MD5 | 26 ++++++------ R/aux_fs.R | 10 ++++ R/bootglg.R | 48 +++++++++++++++++----- R/deviance_residuals.R | 1 R/envelope.sglg.R | 6 +- R/glg.R | 99 +++++++++++++++++++++++----------------------- R/sglg2.R | 60 ++++++++++----------------- R/survglg.R | 5 +- man/bootglg.Rd | 9 ++-- man/deviance_residuals.Rd | 1 man/glg.Rd | 27 ++++++------ man/sglg.Rd | 21 ++++++--- man/survglg.Rd | 3 - 14 files changed, 182 insertions(+), 144 deletions(-)
Title: Tools to Read and Manipulate Fisheries Data
Description: Set of tools to read and manipulate various data formats for fisheries. Mainly
catered towards scientific trawl survey sampling ('biotic') data, acoustic
trawl data, and commercial fishing catch ('landings') data. Among the
supported data formats are the data products from the Norwegian Institute
Marine Research ('IMR') and the International Council for the Exploration of
the Sea (ICES).
Author: Ibrahim Umar [cre, aut],
Sindre Vatnehol [aut],
Arne Johannes Holmin [aut],
Edvin Fuglebakk [aut],
Espen Johnsen [aut],
Norwegian Institute of Marine Research [cph, fnd]
Maintainer: Ibrahim Umar <ibrahim.umar@hi.no>
Diff between RstoxData versions 1.0.23 dated 2021-01-13 and 1.0.24 dated 2021-01-24
RstoxData-1.0.23/RstoxData/man/DefineStoxBioticTranslation.Rd |only RstoxData-1.0.23/RstoxData/man/StoxBioticTranslation.Rd |only RstoxData-1.0.24/RstoxData/DESCRIPTION | 8 RstoxData-1.0.24/RstoxData/MD5 | 32 +- RstoxData-1.0.24/RstoxData/NAMESPACE | 2 RstoxData-1.0.24/RstoxData/NEWS.md | 7 RstoxData-1.0.24/RstoxData/R/DefineAndUpdateVariables.R | 123 ++++------ RstoxData-1.0.24/RstoxData/R/RstoxData-package.R | 2 RstoxData-1.0.24/RstoxData/R/Utilities.R | 18 + RstoxData-1.0.24/RstoxData/R/backwardCompatibility.R | 71 +++++ RstoxData-1.0.24/RstoxData/R/data.R | 8 RstoxData-1.0.24/RstoxData/R/stoxFunctionAttributes.R | 23 - RstoxData-1.0.24/RstoxData/inst/extdata/functionArguments.rds |binary RstoxData-1.0.24/RstoxData/inst/formats/processDataSchema.json | 2 RstoxData-1.0.24/RstoxData/man/DefineTranslation.Rd |only RstoxData-1.0.24/RstoxData/man/ProcessData.Rd | 2 RstoxData-1.0.24/RstoxData/man/TranslateStoxBiotic.Rd | 15 - RstoxData-1.0.24/RstoxData/man/Translation.Rd |only RstoxData-1.0.24/RstoxData/man/backwardCompatibility.Rd | 2 19 files changed, 179 insertions(+), 136 deletions(-)
Title: Lightweight Infrastructure for Handling Multiple R Markdown
Documents
Description: Provides an infrastructure for handling multiple R Markdown
reports, including automated curation and time-stamping of outputs,
parameterisation and provision of helper functions to manage dependencies.
Author: Thibaut Jombart [aut],
Amy Gimma [ctb],
Tim Taylor [aut, cre] (<https://orcid.org/0000-0002-8587-7113>)
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>
Diff between reportfactory versions 0.1.1 dated 2021-01-21 and 0.1.2 dated 2021-01-24
DESCRIPTION | 11 ++++------ MD5 | 12 ++++++----- NEWS.md |only R/compile_reports.R | 6 +++++ README.md | 35 +++++++++++++++++++++++++--------- tests/testthat/setup.R |only tests/testthat/test-compile_reports.R | 6 +++++ tests/testthat/test-list_outputs.R | 3 ++ 8 files changed, 53 insertions(+), 20 deletions(-)
Title: Create n-Dimensional, Quasi-Proportional Venn Diagrams
Description: Provides an interface for the "nVenn"" algorithm (Perez-Silva, Araujo-Voces and Quesada (2018),
<doi:10.1093/bioinformatics/bty109>). This algorithm works for any number of sets,
and usually yields pleasing and informative Venn diagrams with proportionality information.
However, representing more than six sets takes a long time and is hard to interpret, unless many of the
regions are empty. If you cannot make sense of the result, you may want to consider 'UpSetR'.
Author: Victor Quesada [aut, cre, cph]
Maintainer: Victor Quesada <quesadavictor@uniovi.es>
Diff between nVennR versions 0.2.2 dated 2020-05-04 and 0.2.3 dated 2021-01-24
DESCRIPTION | 11 MD5 | 18 - R/hello.R | 5 README.md |only build/vignette.rds |binary inst/CITATION |only inst/doc/nVennR.R | 59 ++- inst/doc/nVennR.Rmd | 64 ++- inst/doc/nVennR.html | 852 ++++++++++++++++++++++++++++++++++++++++++++++----- man/showSVG.Rd | 2 vignettes/nVennR.Rmd | 64 ++- 11 files changed, 940 insertions(+), 135 deletions(-)
Title: Politely Web Scrape Data from SquashInfo
Description: Scrape SquashInfo <http://www.squashinfo.com/> for data on the Professional Squash Association World Tour and other squash events. 'squashinformr' functions scrape, parse, and clean data associated with players, tournaments, and rankings.
Author: Hayden MacDonald [aut, cre]
Maintainer: Hayden MacDonald <hayden.macdonald.8778@gmail.com>
Diff between squashinformr versions 0.1.5 dated 2020-11-18 and 0.2.0 dated 2021-01-24
squashinformr-0.1.5/squashinformr/R/get_player_recent_games.R |only squashinformr-0.1.5/squashinformr/R/get_player_recent_matches.R |only squashinformr-0.1.5/squashinformr/R/get_player_recent_results.R |only squashinformr-0.1.5/squashinformr/R/get_players.R |only squashinformr-0.1.5/squashinformr/R/get_tournament_games.R |only squashinformr-0.1.5/squashinformr/R/get_tournament_matches.R |only squashinformr-0.1.5/squashinformr/R/get_tournament_players.R |only squashinformr-0.1.5/squashinformr/R/get_tournaments.R |only squashinformr-0.2.0/squashinformr/DESCRIPTION | 17 squashinformr-0.2.0/squashinformr/MD5 | 61 squashinformr-0.2.0/squashinformr/NAMESPACE | 138 - squashinformr-0.2.0/squashinformr/R/get_historical_rankings.R | 375 +--- squashinformr-0.2.0/squashinformr/R/get_matchup.R | 805 ++++------ squashinformr-0.2.0/squashinformr/R/get_player_.R |only squashinformr-0.2.0/squashinformr/R/get_player_rankings_history.R | 356 +--- squashinformr-0.2.0/squashinformr/R/get_player_recent_.R |only squashinformr-0.2.0/squashinformr/R/get_rankings.R | 245 --- squashinformr-0.2.0/squashinformr/R/get_tournament_.R |only squashinformr-0.2.0/squashinformr/R/squashinformr.R | 1 squashinformr-0.2.0/squashinformr/man/aggregate_profile_tables.Rd |only squashinformr-0.2.0/squashinformr/man/aggregate_rankings_histories.Rd |only squashinformr-0.2.0/squashinformr/man/get_big_player_table.Rd |only squashinformr-0.2.0/squashinformr/man/get_match_game_data.Rd |only squashinformr-0.2.0/squashinformr/man/get_matchup_profiles.Rd |only squashinformr-0.2.0/squashinformr/man/get_player_profile_table.Rd |only squashinformr-0.2.0/squashinformr/man/get_player_profile_urls.Rd |only squashinformr-0.2.0/squashinformr/man/get_player_rankings_history.Rd | 2 squashinformr-0.2.0/squashinformr/man/get_player_recent_.Rd |only squashinformr-0.2.0/squashinformr/man/get_player_recent_games.Rd | 2 squashinformr-0.2.0/squashinformr/man/get_player_recent_matches.Rd | 2 squashinformr-0.2.0/squashinformr/man/get_player_recent_results.Rd | 2 squashinformr-0.2.0/squashinformr/man/get_players.Rd | 6 squashinformr-0.2.0/squashinformr/man/get_rankings_table.Rd |only squashinformr-0.2.0/squashinformr/man/get_recent_matches.Rd |only squashinformr-0.2.0/squashinformr/man/get_tournament_.Rd |only squashinformr-0.2.0/squashinformr/man/get_tournament_games.Rd | 14 squashinformr-0.2.0/squashinformr/man/get_tournament_matches.Rd | 14 squashinformr-0.2.0/squashinformr/man/get_tournament_objects.Rd |only squashinformr-0.2.0/squashinformr/man/get_tournament_players.Rd | 14 squashinformr-0.2.0/squashinformr/man/get_tournaments.Rd | 14 squashinformr-0.2.0/squashinformr/tests/testthat/test_get_player_rankings_history.R | 10 squashinformr-0.2.0/squashinformr/tests/testthat/test_get_player_recent_results.R | 4 squashinformr-0.2.0/squashinformr/tests/testthat/test_get_tournaments.R | 8 43 files changed, 844 insertions(+), 1246 deletions(-)
Title: Tuning for 'mlr3'
Description: Implements methods for hyperparameter tuning with
'mlr3', e.g. Grid Search, Random Search, or Simulated Annealing.
Various termination criteria can be set and combined. The class
'AutoTuner' provides a convenient way to perform nested resampling in
combination with 'mlr3'.
Author: Marc Becker [cre, aut] (<https://orcid.org/0000-0002-8115-0400>),
Michel Lang [aut] (<https://orcid.org/0000-0001-9754-0393>),
Jakob Richter [aut] (<https://orcid.org/0000-0003-4481-5554>),
Bernd Bischl [aut] (<https://orcid.org/0000-0001-6002-6980>),
Daniel Schalk [aut] (<https://orcid.org/0000-0003-0950-1947>)
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3tuning versions 0.5.0 dated 2020-12-07 and 0.6.0 dated 2021-01-24
DESCRIPTION | 10 - MD5 | 77 ++++---- NEWS.md | 70 +++---- R/ArchiveTuning.R | 9 R/ObjectiveTuning.R | 11 - R/Tuner.R | 70 +++++-- R/TunerCmaes.R | 5 R/TunerDesignPoints.R | 3 R/TunerFromOptimizer.R | 3 R/TunerGenSA.R | 3 R/TunerGridSearch.R | 3 R/TunerNLoptr.R | 5 R/TunerRandomSearch.R | 5 R/TuningInstanceMulticrit.R | 1 R/TuningInstanceSingleCrit.R | 5 R/bibentries.R | 5 build/partial.rdb |binary inst |only man/ArchiveTuning.Rd | 12 - man/Tuner.Rd | 4 man/TuningInstanceSingleCrit.Rd | 2 man/mlr_tuners_cmaes.Rd | 18 + man/mlr_tuners_design_points.Rd | 12 + man/mlr_tuners_gensa.Rd | 12 + man/mlr_tuners_grid_search.Rd | 12 + man/mlr_tuners_nloptr.Rd | 18 + man/mlr_tuners_random_search.Rd | 33 +-- tests/testthat.R | 1 tests/testthat/helper.R | 234 ------------------------- tests/testthat/test_AutoTuner.R | 10 - tests/testthat/test_Tuner.R | 39 +++- tests/testthat/test_TunerCmaes.R | 2 tests/testthat/test_TunerDesignPoints.R | 2 tests/testthat/test_TunerGenSA.R | 4 tests/testthat/test_TunerGridSearch.R | 6 tests/testthat/test_TunerNLoptr.R | 2 tests/testthat/test_TuningInstanceMultiCrit.R | 4 tests/testthat/test_TuningInstanceSingleCrit.R | 32 +-- tests/testthat/test_trafos.R | 4 39 files changed, 314 insertions(+), 434 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-18 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-08-02 1.0
Title: Feature Selection for 'mlr3'
Description: Implements methods for feature selection with
'mlr3', e.g. random search and sequential selection. Various
termination criteria can be set and combined. The class
'AutoFSelector' provides a convenient way to perform nested resampling
in combination with 'mlr3'.
Author: Marc Becker [aut, cre] (<https://orcid.org/0000-0002-8115-0400>),
Patrick Schratz [aut] (<https://orcid.org/0000-0003-0748-6624>),
Michel Lang [aut] (<https://orcid.org/0000-0001-9754-0393>),
Bernd Bischl [aut] (<https://orcid.org/0000-0001-6002-6980>)
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3fselect versions 0.4.1 dated 2020-10-30 and 0.5.0 dated 2021-01-24
DESCRIPTION | 16 ++-- MD5 | 64 +++++++++---------- NEWS.md | 38 ++++++----- R/ArchiveFSelect.R | 9 -- R/FSelectInstanceMultiCrit.R | 6 - R/FSelectInstanceSingleCrit.R | 6 - R/FSelectorDesignPoints.R | 2 R/FSelectorGeneticSearch.R | 2 R/FSelectorRFE.R | 79 +++++++++++++----------- R/FSelectorRandomSearch.R | 2 R/FSelectorSequential.R | 4 - README.md | 7 +- man/ArchiveFSelect.Rd | 12 --- man/AutoFSelector.Rd | 2 man/FSelectInstanceMultiCrit.Rd | 2 man/FSelectInstanceSingleCrit.Rd | 2 man/FSelectorDesignPoints.Rd | 2 man/FSelectorExhaustiveSearch.Rd | 2 man/FSelectorGeneticSearch.Rd | 2 man/FSelectorRFE.Rd | 2 man/FSelectorRandomSearch.Rd | 2 man/FSelectorSequential.Rd | 2 tests/testthat/helper.R | 4 - tests/testthat/test_AutoFSelector.R | 14 +--- tests/testthat/test_FSelectInstanceMultiCrit.R | 10 +-- tests/testthat/test_FSelectInstanceSingleCrit.R | 12 +-- tests/testthat/test_FSelectorDesignPoints.R | 6 - tests/testthat/test_FSelectorExhaustiveSearch.R | 6 - tests/testthat/test_FSelectorGeneticSearch.R | 2 tests/testthat/test_FSelectorRFE.R | 33 ++++++---- tests/testthat/test_FSelectorRandomSearch.R | 4 - tests/testthat/test_FSelectorSequential.R | 10 +-- tests/testthat/test_ObjectiveFSelect.R | 2 33 files changed, 176 insertions(+), 192 deletions(-)
Title: Structural Equation and Twin Modeling in R
Description: Quickly create, run, and report structural equation and twin models.
See '?umx' for help, and umx_open_CRAN_page("umx") for NEWS.
Timothy C. Bates, Michael C. Neale, Hermine H. Maes, (2019). umx: A library for Structural Equation and Twin Modelling in R.
Twin Research and Human Genetics, 22, 27-41. <doi:10.1017/thg.2019.2>.
Author: Timothy C. Bates [aut, cre] (<https://orcid.org/0000-0002-1153-9007>),
Gillespie Nathan [ctb],
Brenton Wiernik [ctb],
Joshua N. Pritikin [ctb],
Michael C. Neale [ctb],
Hermine Maes [ctb]
Maintainer: Timothy C. Bates <timothy.c.bates@gmail.com>
Diff between umx versions 4.2.5 dated 2020-12-12 and 4.3.0 dated 2021-01-24
umx-4.2.5/umx/man/fin_percent_off.Rd |only umx-4.3.0/umx/DESCRIPTION | 18 umx-4.3.0/umx/MD5 | 311 ++++----- umx-4.3.0/umx/NAMESPACE | 14 umx-4.3.0/umx/NEWS.md | 113 ++- umx-4.3.0/umx/R/TRHG_code.R | 2 umx-4.3.0/umx/R/build_run_modify.R | 66 + umx-4.3.0/umx/R/datasets.R | 2 umx-4.3.0/umx/R/fit_and_reporting.R | 307 +++----- umx-4.3.0/umx/R/misc_and_utility.R | 515 ++++++++++++--- umx-4.3.0/umx/R/umxDoC.R | 23 umx-4.3.0/umx/R/umxDoCbyPath.R | 2 umx-4.3.0/umx/R/umxPower.R | 4 umx-4.3.0/umx/R/umx_build_high_level_models.R | 4 umx-4.3.0/umx/R/umx_build_polychoricMatrix3.R | 6 umx-4.3.0/umx/R/umx_build_umxACEv.R | 4 umx-4.3.0/umx/R/umx_build_umxGxEbiv.R | 271 +++---- umx-4.3.0/umx/R/umx_build_umxSimplex.R | 20 umx-4.3.0/umx/R/xmu.R | 96 ++ umx-4.3.0/umx/build |only umx-4.3.0/umx/inst/WORDLIST | 21 umx-4.3.0/umx/man/Fischbein_wt.Rd | 2 umx-4.3.0/umx/man/deg2rad.Rd | 2 umx-4.3.0/umx/man/fin_compound_interest.Rd | 24 umx-4.3.0/umx/man/fin_percent.Rd |only umx-4.3.0/umx/man/install.OpenMx.Rd | 1 umx-4.3.0/umx/man/plot.MxLISRELModel.Rd | 1 umx-4.3.0/umx/man/plot.MxModel.Rd | 1 umx-4.3.0/umx/man/plot.percent.Rd |only umx-4.3.0/umx/man/power.ACE.test.Rd | 4 umx-4.3.0/umx/man/print.money.Rd | 2 umx-4.3.0/umx/man/print.percent.Rd |only umx-4.3.0/umx/man/qm.Rd | 1 umx-4.3.0/umx/man/rad2deg.Rd | 2 umx-4.3.0/umx/man/umx.Rd | 4 umx-4.3.0/umx/man/umxACEcov.Rd | 4 umx-4.3.0/umx/man/umxACEv.Rd | 2 umx-4.3.0/umx/man/umxAPA.Rd | 63 - umx-4.3.0/umx/man/umxBrownie.Rd | 1 umx-4.3.0/umx/man/umxCP.Rd | 35 - umx-4.3.0/umx/man/umxCompare.Rd | 2 umx-4.3.0/umx/man/umxEFA.Rd | 4 umx-4.3.0/umx/man/umxExamples.Rd | 2 umx-4.3.0/umx/man/umxGxE.Rd | 2 umx-4.3.0/umx/man/umxGxEbiv.Rd | 6 umx-4.3.0/umx/man/umxLav2RAM.Rd | 1 umx-4.3.0/umx/man/umxModel.Rd | 1 umx-4.3.0/umx/man/umxModify.Rd | 2 umx-4.3.0/umx/man/umxPlotACE.Rd | 1 umx-4.3.0/umx/man/umxPlotACEcov.Rd | 1 umx-4.3.0/umx/man/umxPlotACEv.Rd | 1 umx-4.3.0/umx/man/umxPlotCP.Rd | 1 umx-4.3.0/umx/man/umxPlotFun.Rd |only umx-4.3.0/umx/man/umxPlotGxE.Rd | 1 umx-4.3.0/umx/man/umxPlotGxEbiv.Rd | 1 umx-4.3.0/umx/man/umxPlotIP.Rd | 1 umx-4.3.0/umx/man/umxPlotSexLim.Rd | 1 umx-4.3.0/umx/man/umxPlotSimplex.Rd | 1 umx-4.3.0/umx/man/umxRAM2Lav.Rd | 1 umx-4.3.0/umx/man/umxReduce.Rd | 2 umx-4.3.0/umx/man/umxReduceACE.Rd | 2 umx-4.3.0/umx/man/umxReduceGxE.Rd | 2 umx-4.3.0/umx/man/umxRenameMatrix.Rd | 1 umx-4.3.0/umx/man/umxSummaryCP.Rd | 1 umx-4.3.0/umx/man/umxSummarySimplex.Rd | 2 umx-4.3.0/umx/man/umxVersion.Rd | 1 umx-4.3.0/umx/man/umx_APA_pval.Rd | 1 umx-4.3.0/umx/man/umx_array_shift.Rd | 1 umx-4.3.0/umx/man/umx_find_object.Rd | 1 umx-4.3.0/umx/man/umx_fun_mean_sd.Rd | 1 umx-4.3.0/umx/man/umx_get_bracket_addresses.Rd | 1 umx-4.3.0/umx/man/umx_get_checkpoint.Rd | 1 umx-4.3.0/umx/man/umx_get_options.Rd | 1 umx-4.3.0/umx/man/umx_lower.tri.Rd |only umx-4.3.0/umx/man/umx_make.Rd | 1 umx-4.3.0/umx/man/umx_msg.Rd | 1 umx-4.3.0/umx/man/umx_open_CRAN_page.Rd | 1 umx-4.3.0/umx/man/umx_pad.Rd | 1 umx-4.3.0/umx/man/umx_polychoric.Rd | 2 umx-4.3.0/umx/man/umx_polypairwise.Rd | 2 umx-4.3.0/umx/man/umx_polytriowise.Rd | 2 umx-4.3.0/umx/man/umx_print.Rd | 31 umx-4.3.0/umx/man/umx_score_scale.Rd | 1 umx-4.3.0/umx/man/umx_set_auto_plot.Rd | 1 umx-4.3.0/umx/man/umx_set_auto_run.Rd | 1 umx-4.3.0/umx/man/umx_set_checkpoint.Rd | 1 umx-4.3.0/umx/man/umx_set_condensed_slots.Rd | 1 umx-4.3.0/umx/man/umx_set_cores.Rd | 1 umx-4.3.0/umx/man/umx_set_data_variance_check.Rd | 1 umx-4.3.0/umx/man/umx_set_optimization_options.Rd | 1 umx-4.3.0/umx/man/umx_set_optimizer.Rd | 1 umx-4.3.0/umx/man/umx_set_plot_file_suffix.Rd | 12 umx-4.3.0/umx/man/umx_set_plot_format.Rd | 3 umx-4.3.0/umx/man/umx_set_plot_use_hrbrthemes.Rd |only umx-4.3.0/umx/man/umx_set_separator.Rd | 1 umx-4.3.0/umx/man/umx_set_silent.Rd | 16 umx-4.3.0/umx/man/umx_set_table_format.Rd | 1 umx-4.3.0/umx/man/umx_standardize.Rd | 1 umx-4.3.0/umx/man/umx_string_to_algebra.Rd | 1 umx-4.3.0/umx/man/xmuHasSquareBrackets.Rd | 1 umx-4.3.0/umx/man/xmuLabel_MATRIX_Model.Rd | 1 umx-4.3.0/umx/man/xmuLabel_Matrix.Rd | 1 umx-4.3.0/umx/man/xmuLabel_RAM_Model.Rd | 1 umx-4.3.0/umx/man/xmuMI.Rd | 1 umx-4.3.0/umx/man/xmuMakeDeviationThresholdsMatrices.Rd | 1 umx-4.3.0/umx/man/xmuMakeOneHeadedPathsFromPathList.Rd | 1 umx-4.3.0/umx/man/xmuMakeTwoHeadedPathsFromPathList.Rd | 1 umx-4.3.0/umx/man/xmuMaxLevels.Rd | 1 umx-4.3.0/umx/man/xmuMinLevels.Rd | 1 umx-4.3.0/umx/man/xmuPropagateLabels.Rd | 1 umx-4.3.0/umx/man/xmuRAM2Ordinal.Rd | 1 umx-4.3.0/umx/man/xmuTwinSuper_Continuous.Rd | 1 umx-4.3.0/umx/man/xmuTwinUpgradeMeansToCovariateModel.Rd | 1 umx-4.3.0/umx/man/xmu_CI_merge.Rd | 1 umx-4.3.0/umx/man/xmu_CI_stash.Rd | 1 umx-4.3.0/umx/man/xmu_DF_to_mxData_TypeCov.Rd | 1 umx-4.3.0/umx/man/xmu_PadAndPruneForDefVars.Rd | 1 umx-4.3.0/umx/man/xmu_bracket_address2rclabel.Rd | 1 umx-4.3.0/umx/man/xmu_cell_is_on.Rd | 1 umx-4.3.0/umx/man/xmu_check_levels_identical.Rd | 1 umx-4.3.0/umx/man/xmu_check_needs_means.Rd | 1 umx-4.3.0/umx/man/xmu_check_variance.Rd | 1 umx-4.3.0/umx/man/xmu_clean_label.Rd | 1 umx-4.3.0/umx/man/xmu_data_missing.Rd | 1 umx-4.3.0/umx/man/xmu_data_swap_a_block.Rd | 1 umx-4.3.0/umx/man/xmu_describe_data_WLS.Rd | 1 umx-4.3.0/umx/man/xmu_dot_make_paths.Rd | 1 umx-4.3.0/umx/man/xmu_dot_make_residuals.Rd | 1 umx-4.3.0/umx/man/xmu_dot_maker.Rd | 1 umx-4.3.0/umx/man/xmu_dot_move_ranks.Rd | 1 umx-4.3.0/umx/man/xmu_dot_rank_str.Rd | 1 umx-4.3.0/umx/man/xmu_extract_column.Rd | 3 umx-4.3.0/umx/man/xmu_get_CI.Rd | 1 umx-4.3.0/umx/man/xmu_lavaan_process_group.Rd | 1 umx-4.3.0/umx/man/xmu_make_TwinSuperModel.Rd | 1 umx-4.3.0/umx/man/xmu_make_bin_cont_pair_data.Rd | 1 umx-4.3.0/umx/man/xmu_make_mxData.Rd | 1 umx-4.3.0/umx/man/xmu_match.arg.Rd | 1 umx-4.3.0/umx/man/xmu_name_from_lavaan_str.Rd | 1 umx-4.3.0/umx/man/xmu_path2twin.Rd | 1 umx-4.3.0/umx/man/xmu_path_regex.Rd | 1 umx-4.3.0/umx/man/xmu_print_algebras.Rd |only umx-4.3.0/umx/man/xmu_rclabel_2_bracket_address.Rd | 1 umx-4.3.0/umx/man/xmu_safe_run_summary.Rd | 1 umx-4.3.0/umx/man/xmu_set_sep_from_suffix.Rd | 1 umx-4.3.0/umx/man/xmu_show_fit_or_comparison.Rd | 1 umx-4.3.0/umx/man/xmu_simplex_corner.Rd | 1 umx-4.3.0/umx/man/xmu_standardize_ACE.Rd | 1 umx-4.3.0/umx/man/xmu_standardize_ACEcov.Rd | 1 umx-4.3.0/umx/man/xmu_standardize_ACEv.Rd | 1 umx-4.3.0/umx/man/xmu_standardize_CP.Rd | 1 umx-4.3.0/umx/man/xmu_standardize_IP.Rd | 1 umx-4.3.0/umx/man/xmu_standardize_RAM.Rd | 1 umx-4.3.0/umx/man/xmu_standardize_SexLim.Rd | 1 umx-4.3.0/umx/man/xmu_standardize_Simplex.Rd | 1 umx-4.3.0/umx/man/xmu_start_value_list.Rd | 1 umx-4.3.0/umx/man/xmu_starts.Rd | 1 umx-4.3.0/umx/man/xmu_twin_add_WeightMatrices.Rd | 1 umx-4.3.0/umx/man/xmu_twin_check.Rd | 1 umx-4.3.0/umx/man/xmu_twin_get_var_names.Rd | 1 umx-4.3.0/umx/man/xmu_twin_upgrade_selDvs2SelVars.Rd | 1 161 files changed, 1340 insertions(+), 804 deletions(-)
Title: Functions for Kriging and Point Pattern Analysis
Description: Functions for kriging and point pattern analysis.
Author: Brian Ripley [aut, cre, cph],
Roger Bivand [ctb],
William Venables [cph]
Maintainer: Brian Ripley <ripley@stats.ox.ac.uk>
Diff between spatial versions 7.3-12 dated 2020-04-26 and 7.3-13 dated 2021-01-24
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- inst/CITATION | 12 ++++++------ 3 files changed, 12 insertions(+), 12 deletions(-)
Title: Feed-Forward Neural Networks and Multinomial Log-Linear Models
Description: Software for feed-forward neural networks with a single
hidden layer, and for multinomial log-linear models.
Author: Brian Ripley [aut, cre, cph],
William Venables [cph]
Maintainer: Brian Ripley <ripley@stats.ox.ac.uk>
Diff between nnet versions 7.3-14 dated 2020-04-26 and 7.3-15 dated 2021-01-24
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- inst/CITATION | 12 ++++++------ 3 files changed, 12 insertions(+), 12 deletions(-)
Title: Functions for Classification
Description: Various functions for classification, including k-nearest
neighbour, Learning Vector Quantization and Self-Organizing Maps.
Author: Brian Ripley [aut, cre, cph],
William Venables [cph]
Maintainer: Brian Ripley <ripley@stats.ox.ac.uk>
Diff between class versions 7.3-17 dated 2020-04-26 and 7.3-18 dated 2021-01-24
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- inst/CITATION | 12 ++++++------ 3 files changed, 12 insertions(+), 12 deletions(-)
Title: Data Operator
Description: Flexibly convert data between long and wide format using just two
functions: reshape_toLong() and reshape_toWide().
Author: Jing Zhang, Zhi Jin
Maintainer: Jing Zhang<zj391120@163.com>
Diff between do versions 1.6.0.0 dated 2020-12-03 and 1.7.0.0 dated 2021-01-24
DESCRIPTION | 9 MD5 | 21 + NAMESPACE | 12 R/c.xml_nodeset.R |only R/children_node.R |only R/duplicated.R |only R/increase_decrease.R |only R/knife.R | 12 build/vignette.rds |binary inst/doc/version-update.html | 629 ++++++++++++++++++++----------------------- man/all_children.Rd |only man/c.xml_nodeset.Rd |only man/decrease.Rd |only man/duplicated_all.Rd |only man/duplicated_last.Rd |only man/has_children.Rd |only man/increase.Rd |only 17 files changed, 339 insertions(+), 344 deletions(-)
Title: 'SQLite' Interface for R
Description: Embeds the 'SQLite' database engine in R and
provides an interface compliant with the 'DBI' package. The source for
the 'SQLite' engine is included.
Author: Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>),
Hadley Wickham [aut],
David A. James [aut],
Seth Falcon [aut],
SQLite Authors [ctb] (for the included SQLite sources),
Liam Healy [ctb] (for the included SQLite sources),
R Consortium [fnd],
RStudio [cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between RSQLite versions 2.2.2 dated 2021-01-08 and 2.2.3 dated 2021-01-24
DESCRIPTION | 12 +-- MD5 | 45 +++++++------ NEWS.md | 8 ++ R/RcppExports.R | 4 - R/SQLiteConnection.R | 3 R/connect.R | 31 ++++++++- README.md | 2 man/SQLite.Rd | 22 ++++++ src/DbColumnStorage.cpp | 5 + src/DbConnection.cpp | 10 ++- src/DbConnection.h | 4 - src/RcppExports.cpp | 9 +- src/SqliteColumnDataSource.cpp | 110 ++++++++++++++++++++++++++++++---- src/SqliteColumnDataSource.h | 7 +- src/SqliteColumnDataSourceFactory.cpp | 7 +- src/SqliteColumnDataSourceFactory.h | 3 src/SqliteDataFrame.cpp | 4 - src/SqliteDataFrame.h | 3 src/SqliteResultImpl.cpp | 22 +++++- src/SqliteResultImpl.h | 1 src/connection.cpp | 4 - src/vendor/sqlite3/sqlite3.c | 20 +++--- src/vendor/sqlite3/sqlite3.h | 8 +- tests/testthat/test-extendedTypes.R |only 24 files changed, 262 insertions(+), 82 deletions(-)
Title: PC Algorithm with the Principle of Mendelian Randomization
Description: A PC Algorithm with the Principle of Mendelian Randomization. This package implements the MRPC
(PC with the principle of Mendelian randomization) algorithm to infer causal graphs. It also
contains functions to simulate data under a certain topology, to visualize a graph in different
ways, and to compare graphs and quantify the differences.
See Badsha and Fu (2019) <doi:10.3389/fgene.2019.00460>,Badsha, Martin and Fu (2018) <arXiv:1806.01899>.
Author: Md Bahadur Badsha [aut,cre],Evan A Martin [ctb] and Audrey Qiuyan Fu [aut]
Maintainer: Md Bahadur Badsha <mbbadshar@gmail.com>
Diff between MRPC versions 2.2.1 dated 2020-10-06 and 2.2.2 dated 2021-01-24
DESCRIPTION | 12 ++++++------ MD5 | 2 +- 2 files changed, 7 insertions(+), 7 deletions(-)
Title: Utility Functions for 'spatstat'
Description: Contains utility functions for the 'spatstat' package
which may also be useful for other purposes.
Author: Adrian Baddeley [aut, cre] (<https://orcid.org/0000-0001-9499-8382>),
Rolf Turner [aut] (<https://orcid.org/0000-0001-5521-5218>),
Ege Rubak [aut] (<https://orcid.org/0000-0002-6675-533X>)
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.utils versions 1.20-2 dated 2021-01-07 and 2.0-0 dated 2021-01-24
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NAMESPACE | 1 + NEWS | 18 ++++++++++++++++++ inst/doc/packagesizes.txt | 2 +- man/expand.polynom.Rd | 5 +++-- 6 files changed, 33 insertions(+), 13 deletions(-)
More information about spatstat.utils at CRAN
Permanent link
Title: Extension to 'spatstat' for Local Composite Likelihood
Description: Extension to the 'spatstat' package, enabling the user
to fit point process models to point pattern data
by local composite likelihood ('geographically weighted
regression').
Author: Adrian Baddeley [aut, cre]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.local versions 3.6-0 dated 2019-04-13 and 4.0-0 dated 2021-01-24
DESCRIPTION | 11 ++++++----- MD5 | 41 +++++++++++++++++++++-------------------- NAMESPACE | 4 +++- NEWS |only man/Smooth.locmincon.Rd | 4 ++-- man/Smooth.locppm.Rd | 6 +++--- man/bw.loccit.Rd | 2 +- man/bw.locppm.Rd | 2 +- man/homtest.Rd | 2 +- man/homtestmap.Rd | 3 ++- man/loccit.Rd | 8 ++++---- man/locmincon.Rd | 36 ++++++++++++++++++------------------ man/locppm.Rd | 8 ++++---- man/methods.locmincon.Rd | 2 +- man/methods.locppm.Rd | 6 +++--- man/plot.loccit.Rd | 6 +++--- man/plot.locmincon.Rd | 6 +++--- man/plot.locppm.Rd | 4 ++-- man/predict.loccit.Rd | 2 +- man/predict.locppm.Rd | 2 +- man/psib.loccit.Rd | 6 +++--- man/with.locmincon.Rd | 2 +- 22 files changed, 84 insertions(+), 79 deletions(-)
More information about spatstat.local at CRAN
Permanent link
Title: Global Surface Summary of the Day ('GSOD') Weather Data Client
Description: Provides automated downloading, parsing, cleaning, unit conversion
and formatting of Global Surface Summary of the Day ('GSOD') weather data
from the from the USA National Centers for Environmental Information
('NCEI'). Units are converted from from United States Customary System
('USCS') units to International System of Units ('SI'). Stations may be
individually checked for number of missing days defined by the user, where
stations with too many missing observations are omitted. Only stations with
valid reported latitude and longitude values are permitted in the final
data. Additional useful elements, saturation vapour pressure ('es'), actual
vapour pressure ('ea') and relative humidity ('RH') are calculated from the
original data using the improved August-Roche-Magnus approximation (Alduchov
& Eskridge 1996) and included in the final data set. The resulting metadata
include station identification information, country, state, latitude,
longitude, elevation, weather observations and associated flags. For
information on the 'GSOD' data from 'NCEI', please see the 'GSOD'
'readme.txt' file available from,
<https://www1.ncdc.noaa.gov/pub/data/gsod/readme.txt>.
Author: Adam Sparks [aut, cre] (<https://orcid.org/0000-0002-0061-8359>),
Tomislav Hengl [aut] (<https://orcid.org/0000-0002-9921-5129>),
Andrew Nelson [aut] (<https://orcid.org/0000-0002-7249-3778>),
Hugh Parsonage [cph, ctb] (<https://orcid.org/0000-0003-4055-0835>),
Taras Kaduk [ctb] (Suggestion for handling bulk station downloads more
efficiently),
Gwenael Giboire [ctb] (Several bug reports in early versions and
testing feedback),
Łukasz Pawlik [ctb] (Reported bug in windspeed conversion calculation),
Ross Darnell [ctb] (Reported bug in 'Windows OS' versions causing
'GSOD' data untarring to fail,
<https://orcid.org/0000-0002-7973-6322>),
Tyler Widdison [ctb] (Reported bug where `nearest_stations()` did not
return stations in order of nearest to farthest.)
Maintainer: Adam Sparks <adamhsparks@gmail.com>
Diff between GSODR versions 2.1.2 dated 2020-09-20 and 3.0.0 dated 2021-01-24
DESCRIPTION | 13 MD5 | 48 +- NEWS.md | 26 - R/get_GSOD.R | 8 R/internal_functions.R | 57 +- R/process_csv.R | 8 R/reformat_GSOD.R | 4 README.md | 2 build/vignette.rds |binary inst/doc/GSODR.Rmd | 322 +++++---------- inst/doc/GSODR.html | 641 +++++++++--------------------- inst/extdata/isd_history.rda |binary man/get_GSOD.Rd | 6 man/reformat_GSOD.Rd | 6 tests/testthat/test-get_GSOD.R | 59 +- tests/testthat/test-get_inventory.R | 1 tests/testthat/test-nearest_stations.R | 3 tests/testthat/test-process_csv.R | 3 tests/testthat/test-reformat_GSOD.R | 2 tests/testthat/test-update_station_list.R | 3 vignettes/GSODR.Rmd | 322 +++++---------- vignettes/GSODR.Rmd.orig | 19 vignettes/precompile.R | 2 vignettes/references.bib | 3 vignettes/unnamed-chunk-1-1.png |binary 25 files changed, 554 insertions(+), 1004 deletions(-)
Title: Bayesian Quantile Regression for Ordinal Models
Description: Provides an estimation technique for Bayesian quantile
regression in ordinal models. Two algorithms are considered - one
for an ordinal model with three outcomes and the other for an ordinal
model with more than 3 outcomes. It further provides model performance
criteria and trace plots for Markov chain Monte Carlo (MCMC) draws.
Rahman, M. A. (2016) <doi:10.1214/15-BA939>.
Greenberg, E. (2012) <doi:10.1017/CBO9781139058414>.
Spiegelhalter, D. J., Best, N. G., Carlin B. P. and Linde A. (2002) <doi:10.1111/1467-9868.00353>.
Author: Dr. Mohammad Arshad Rahman Developer [aut],
Prajual Maheshwari [cre]
Maintainer: Prajual Maheshwari <prajual1391@gmail.com>
Diff between bqror versions 0.1.3 dated 2020-11-10 and 0.1.4 dated 2021-01-24
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/ODRI.R | 4 +--- R/ODRII.R | 3 +-- R/bqror.R | 2 +- 5 files changed, 10 insertions(+), 13 deletions(-)