Title: Tools for Single Cell Genomics
Description: A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>, and Hao, Hao, et al (2020) <doi:10.1101/2020.10.12.335331> for more details.
Author: Andrew Butler [ctb] (<https://orcid.org/0000-0003-3608-0463>),
Saket Choudhary [ctb] (<https://orcid.org/0000-0001-5202-7633>),
Charlotte Darby [ctb] (<https://orcid.org/0000-0003-2195-5300>),
Jeff Farrell [ctb],
Christoph Hafemeister [ctb] (<https://orcid.org/0000-0001-6365-8254>),
Yuhan Hao [ctb] (<https://orcid.org/0000-0002-1810-0822>),
Paul Hoffman [aut, cre] (<https://orcid.org/0000-0002-7693-8957>),
Jaison Jain [ctb] (<https://orcid.org/0000-0002-9478-5018>),
Efthymia Papalexi [ctb] (<https://orcid.org/0000-0001-5898-694X>),
Patrick Roelli [ctb],
Rahul Satija [ctb] (<https://orcid.org/0000-0001-9448-8833>),
Karthik Shekhar [ctb],
Avi Srivastava [ctb] (<https://orcid.org/0000-0001-9798-2079>),
Tim Stuart [ctb] (<https://orcid.org/0000-0002-3044-0897>),
Kristof Torkenczy [ctb] (<https://orcid.org/0000-0002-4869-7957>),
Shiwei Zheng [ctb] (<https://orcid.org/0000-0001-6682-6743>),
Satija Lab and Collaborators [fnd]
Maintainer: Paul Hoffman <nygcSatijalab@nygenome.org>
Diff between Seurat versions 3.2.3 dated 2020-12-15 and 4.0.0 dated 2021-01-29
Seurat-3.2.3/Seurat/data/pbmc_small.rda |only Seurat-3.2.3/Seurat/man/ALRAChooseKPlot.Rd |only Seurat-3.2.3/Seurat/man/AddMetaData.Rd |only Seurat-3.2.3/Seurat/man/Assays.Rd |only Seurat-3.2.3/Seurat/man/CellsByIdentities.Rd |only Seurat-3.2.3/Seurat/man/Command.Rd |only Seurat-3.2.3/Seurat/man/CreateAssayObject.Rd |only Seurat-3.2.3/Seurat/man/CreateDimReducObject.Rd |only Seurat-3.2.3/Seurat/man/CreateGeneActivityMatrix.Rd |only Seurat-3.2.3/Seurat/man/CreateSeuratObject.Rd |only Seurat-3.2.3/Seurat/man/DefaultAssay.Rd |only Seurat-3.2.3/Seurat/man/Distances.Rd |only Seurat-3.2.3/Seurat/man/Embeddings.Rd |only Seurat-3.2.3/Seurat/man/ExportToCellbrowser.Rd |only Seurat-3.2.3/Seurat/man/FetchData.Rd |only Seurat-3.2.3/Seurat/man/GetAssayData.Rd |only Seurat-3.2.3/Seurat/man/HVFInfo.Rd |only Seurat-3.2.3/Seurat/man/Idents.Rd |only Seurat-3.2.3/Seurat/man/Images.Rd |only Seurat-3.2.3/Seurat/man/Index.Rd |only Seurat-3.2.3/Seurat/man/Indices.Rd |only Seurat-3.2.3/Seurat/man/IsGlobal.Rd |only Seurat-3.2.3/Seurat/man/JS.Rd |only Seurat-3.2.3/Seurat/man/Key.Rd |only Seurat-3.2.3/Seurat/man/Loadings.Rd |only Seurat-3.2.3/Seurat/man/LogSeuratCommand.Rd |only Seurat-3.2.3/Seurat/man/Misc.Rd |only Seurat-3.2.3/Seurat/man/Neighbors.Rd |only Seurat-3.2.3/Seurat/man/OldWhichCells.Rd |only Seurat-3.2.3/Seurat/man/Project.Rd |only Seurat-3.2.3/Seurat/man/ReadAlevin.Rd |only Seurat-3.2.3/Seurat/man/ReadAlevinCsv.Rd |only Seurat-3.2.3/Seurat/man/Reductions.Rd |only Seurat-3.2.3/Seurat/man/RenameAssays.Rd |only Seurat-3.2.3/Seurat/man/RowMergeSparseMatrices.Rd |only Seurat-3.2.3/Seurat/man/RunALRA.Rd |only Seurat-3.2.3/Seurat/man/RunLSI.Rd |only Seurat-3.2.3/Seurat/man/SVFInfo.Rd |only Seurat-3.2.3/Seurat/man/SetAssayData.Rd |only Seurat-3.2.3/Seurat/man/SpatiallyVariableFeatures.Rd |only Seurat-3.2.3/Seurat/man/Stdev.Rd |only Seurat-3.2.3/Seurat/man/StopCellbrowser.Rd |only Seurat-3.2.3/Seurat/man/SubsetData.Rd |only Seurat-3.2.3/Seurat/man/TF.IDF.Rd |only Seurat-3.2.3/Seurat/man/Tool.Rd |only Seurat-3.2.3/Seurat/man/UpdateSeuratObject.Rd |only Seurat-3.2.3/Seurat/man/VariableFeatures.Rd |only Seurat-3.2.3/Seurat/man/WhichCells.Rd |only Seurat-3.2.3/Seurat/man/as.Graph.Rd |only Seurat-3.2.3/Seurat/man/as.Neighbor.Rd |only Seurat-3.2.3/Seurat/man/as.list.SeuratCommand.Rd |only Seurat-3.2.3/Seurat/man/as.loom.Rd |only Seurat-3.2.3/Seurat/man/h5ad.Rd |only Seurat-3.2.3/Seurat/man/merge.Seurat.Rd |only Seurat-3.2.3/Seurat/man/oldseurat-class.Rd |only Seurat-3.2.3/Seurat/man/pbmc_small.Rd |only Seurat-3.2.3/Seurat/man/print.DimReduc.Rd |only Seurat-3.2.3/Seurat/man/subset.Seurat.Rd |only Seurat-4.0.0/Seurat/DESCRIPTION | 79 Seurat-4.0.0/Seurat/MD5 | 433 Seurat-4.0.0/Seurat/NAMESPACE | 312 Seurat-4.0.0/Seurat/NEWS.md | 171 Seurat-4.0.0/Seurat/R/RcppExports.R | 20 Seurat-4.0.0/Seurat/R/clustering.R | 993 + Seurat-4.0.0/Seurat/R/convenience.R | 6 Seurat-4.0.0/Seurat/R/data.R | 28 Seurat-4.0.0/Seurat/R/differential_expression.R | 896 - Seurat-4.0.0/Seurat/R/dimensional_reduction.R | 513 Seurat-4.0.0/Seurat/R/generics.R | 1077 - Seurat-4.0.0/Seurat/R/integration.R | 2750 ++- Seurat-4.0.0/Seurat/R/mixscape.R |only Seurat-4.0.0/Seurat/R/objects.R | 7416 +--------- Seurat-4.0.0/Seurat/R/preprocessing.R | 1164 - Seurat-4.0.0/Seurat/R/reexports.R |only Seurat-4.0.0/Seurat/R/tree.R | 5 Seurat-4.0.0/Seurat/R/utilities.R | 970 - Seurat-4.0.0/Seurat/R/visualization.R | 378 Seurat-4.0.0/Seurat/R/zzz.R | 30 Seurat-4.0.0/Seurat/README.md | 94 Seurat-4.0.0/Seurat/build |only Seurat-4.0.0/Seurat/inst/CITATION | 68 Seurat-4.0.0/Seurat/man/AddModuleScore.Rd | 2 Seurat-4.0.0/Seurat/man/AggregateExpression.Rd |only Seurat-4.0.0/Seurat/man/AnchorSet-class.Rd | 3 Seurat-4.0.0/Seurat/man/AnnotateAnchors.Rd |only Seurat-4.0.0/Seurat/man/Assay-class.Rd | 33 Seurat-4.0.0/Seurat/man/AugmentPlot.Rd | 2 Seurat-4.0.0/Seurat/man/AverageExpression.Rd | 30 Seurat-4.0.0/Seurat/man/BGTextColor.Rd | 1 Seurat-4.0.0/Seurat/man/BarcodeInflectionsPlot.Rd | 2 Seurat-4.0.0/Seurat/man/BuildClusterTree.Rd | 5 Seurat-4.0.0/Seurat/man/CalcPerturbSig.Rd |only Seurat-4.0.0/Seurat/man/CalculateBarcodeInflections.Rd | 2 Seurat-4.0.0/Seurat/man/CaseMatch.Rd | 2 Seurat-4.0.0/Seurat/man/CellCycleScoring.Rd | 2 Seurat-4.0.0/Seurat/man/CellScatter.Rd | 7 Seurat-4.0.0/Seurat/man/CellSelector.Rd | 2 Seurat-4.0.0/Seurat/man/Cells.Rd | 34 Seurat-4.0.0/Seurat/man/CellsByImage.Rd | 1 Seurat-4.0.0/Seurat/man/CollapseEmbeddingOutliers.Rd | 2 Seurat-4.0.0/Seurat/man/CollapseSpeciesExpressionMatrix.Rd | 1 Seurat-4.0.0/Seurat/man/ColorDimSplit.Rd | 6 Seurat-4.0.0/Seurat/man/CombinePlots.Rd | 2 Seurat-4.0.0/Seurat/man/CreateSCTAssayObject.Rd |only Seurat-4.0.0/Seurat/man/CustomDistance.Rd | 2 Seurat-4.0.0/Seurat/man/CustomPalette.Rd | 1 Seurat-4.0.0/Seurat/man/DEenrichRPlot.Rd |only Seurat-4.0.0/Seurat/man/DietSeurat.Rd | 1 Seurat-4.0.0/Seurat/man/DimHeatmap.Rd | 3 Seurat-4.0.0/Seurat/man/DimPlot.Rd | 7 Seurat-4.0.0/Seurat/man/DimReduc-class.Rd | 39 Seurat-4.0.0/Seurat/man/DiscretePalette.Rd | 1 Seurat-4.0.0/Seurat/man/DoHeatmap.Rd | 2 Seurat-4.0.0/Seurat/man/DotPlot.Rd | 2 Seurat-4.0.0/Seurat/man/ElbowPlot.Rd | 2 Seurat-4.0.0/Seurat/man/ExpMean.Rd | 1 Seurat-4.0.0/Seurat/man/ExpSD.Rd | 1 Seurat-4.0.0/Seurat/man/ExpVar.Rd | 1 Seurat-4.0.0/Seurat/man/FastRowScale.Rd | 1 Seurat-4.0.0/Seurat/man/FeaturePlot.Rd | 6 Seurat-4.0.0/Seurat/man/FeatureScatter.Rd | 12 Seurat-4.0.0/Seurat/man/FilterSlideSeq.Rd | 1 Seurat-4.0.0/Seurat/man/FindAllMarkers.Rd | 15 Seurat-4.0.0/Seurat/man/FindClusters.Rd | 1 Seurat-4.0.0/Seurat/man/FindConservedMarkers.Rd | 2 Seurat-4.0.0/Seurat/man/FindIntegrationAnchors.Rd | 13 Seurat-4.0.0/Seurat/man/FindMarkers.Rd | 73 Seurat-4.0.0/Seurat/man/FindMultiModalNeighbors.Rd |only Seurat-4.0.0/Seurat/man/FindNeighbors.Rd | 87 Seurat-4.0.0/Seurat/man/FindSpatiallyVariableFeatures.Rd | 1 Seurat-4.0.0/Seurat/man/FindSubCluster.Rd |only Seurat-4.0.0/Seurat/man/FindTransferAnchors.Rd | 47 Seurat-4.0.0/Seurat/man/FindVariableFeatures.Rd | 4 Seurat-4.0.0/Seurat/man/FoldChange.Rd |only Seurat-4.0.0/Seurat/man/GetAssay.Rd | 2 Seurat-4.0.0/Seurat/man/GetImage.Rd | 40 Seurat-4.0.0/Seurat/man/GetIntegrationData.Rd | 5 Seurat-4.0.0/Seurat/man/GetResidual.Rd | 24 Seurat-4.0.0/Seurat/man/GetTissueCoordinates.Rd | 26 Seurat-4.0.0/Seurat/man/GetTransferPredictions.Rd | 1 Seurat-4.0.0/Seurat/man/Graph-class.Rd | 14 Seurat-4.0.0/Seurat/man/GroupCorrelation.Rd | 1 Seurat-4.0.0/Seurat/man/GroupCorrelationPlot.Rd | 1 Seurat-4.0.0/Seurat/man/HTODemux.Rd | 1 Seurat-4.0.0/Seurat/man/HTOHeatmap.Rd | 1 Seurat-4.0.0/Seurat/man/HoverLocator.Rd | 2 Seurat-4.0.0/Seurat/man/IFeaturePlot.Rd | 1 Seurat-4.0.0/Seurat/man/ISpatialDimPlot.Rd | 1 Seurat-4.0.0/Seurat/man/ISpatialFeaturePlot.Rd | 1 Seurat-4.0.0/Seurat/man/IntegrateData.Rd | 11 Seurat-4.0.0/Seurat/man/IntegrateEmbeddings.Rd |only Seurat-4.0.0/Seurat/man/IntegrationAnchorSet-class.Rd |only Seurat-4.0.0/Seurat/man/IntegrationData-class.Rd | 1 Seurat-4.0.0/Seurat/man/JackStraw.Rd | 2 Seurat-4.0.0/Seurat/man/JackStrawData-class.Rd | 21 Seurat-4.0.0/Seurat/man/JackStrawPlot.Rd | 2 Seurat-4.0.0/Seurat/man/L2CCA.Rd | 1 Seurat-4.0.0/Seurat/man/L2Dim.Rd | 1 Seurat-4.0.0/Seurat/man/LabelClusters.Rd | 2 Seurat-4.0.0/Seurat/man/LabelPoints.Rd | 2 Seurat-4.0.0/Seurat/man/LinkedPlots.Rd | 1 Seurat-4.0.0/Seurat/man/Load10X_Spatial.Rd | 1 Seurat-4.0.0/Seurat/man/LoadAnnoyIndex.Rd | 1 Seurat-4.0.0/Seurat/man/LoadSTARmap.Rd | 1 Seurat-4.0.0/Seurat/man/LocalStruct.Rd | 1 Seurat-4.0.0/Seurat/man/LogNormalize.Rd | 1 Seurat-4.0.0/Seurat/man/LogVMR.Rd | 1 Seurat-4.0.0/Seurat/man/MULTIseqDemux.Rd | 1 Seurat-4.0.0/Seurat/man/MapQuery.Rd |only Seurat-4.0.0/Seurat/man/MappingScore.Rd |only Seurat-4.0.0/Seurat/man/MetaFeature.Rd | 2 Seurat-4.0.0/Seurat/man/MinMax.Rd | 1 Seurat-4.0.0/Seurat/man/MixingMetric.Rd | 1 Seurat-4.0.0/Seurat/man/MixscapeHeatmap.Rd |only Seurat-4.0.0/Seurat/man/MixscapeLDA.Rd |only Seurat-4.0.0/Seurat/man/ModalityWeights-class.Rd |only Seurat-4.0.0/Seurat/man/NNPlot.Rd |only Seurat-4.0.0/Seurat/man/Neighbor-class.Rd | 30 Seurat-4.0.0/Seurat/man/NormalizeData.Rd | 2 Seurat-4.0.0/Seurat/man/PCASigGenes.Rd | 2 Seurat-4.0.0/Seurat/man/PercentageFeatureSet.Rd | 2 Seurat-4.0.0/Seurat/man/PlotClusterTree.Rd | 2 Seurat-4.0.0/Seurat/man/PlotPerturbScore.Rd |only Seurat-4.0.0/Seurat/man/PolyDimPlot.Rd | 1 Seurat-4.0.0/Seurat/man/PolyFeaturePlot.Rd | 1 Seurat-4.0.0/Seurat/man/PredictAssay.Rd |only Seurat-4.0.0/Seurat/man/PrepLDA.Rd |only Seurat-4.0.0/Seurat/man/PrepSCTIntegration.Rd | 1 Seurat-4.0.0/Seurat/man/ProjectDim.Rd | 2 Seurat-4.0.0/Seurat/man/ProjectUMAP.Rd |only Seurat-4.0.0/Seurat/man/Radius.Rd | 18 Seurat-4.0.0/Seurat/man/Read10X.Rd | 4 Seurat-4.0.0/Seurat/man/Read10X_Image.Rd | 1 Seurat-4.0.0/Seurat/man/Read10X_h5.Rd | 1 Seurat-4.0.0/Seurat/man/ReadSlideSeq.Rd | 1 Seurat-4.0.0/Seurat/man/RegroupIdents.Rd | 2 Seurat-4.0.0/Seurat/man/RelativeCounts.Rd | 1 Seurat-4.0.0/Seurat/man/RenameCells.Rd | 73 Seurat-4.0.0/Seurat/man/RidgePlot.Rd | 2 Seurat-4.0.0/Seurat/man/RunCCA.Rd | 2 Seurat-4.0.0/Seurat/man/RunICA.Rd | 1 Seurat-4.0.0/Seurat/man/RunLDA.Rd |only Seurat-4.0.0/Seurat/man/RunMarkVario.Rd | 1 Seurat-4.0.0/Seurat/man/RunMixscape.Rd |only Seurat-4.0.0/Seurat/man/RunMoransI.Rd | 1 Seurat-4.0.0/Seurat/man/RunPCA.Rd | 1 Seurat-4.0.0/Seurat/man/RunSPCA.Rd |only Seurat-4.0.0/Seurat/man/RunTSNE.Rd | 1 Seurat-4.0.0/Seurat/man/RunUMAP.Rd | 5 Seurat-4.0.0/Seurat/man/SCTAssay-class.Rd |only Seurat-4.0.0/Seurat/man/SCTResults.Rd |only Seurat-4.0.0/Seurat/man/SCTransform.Rd | 22 Seurat-4.0.0/Seurat/man/STARmap-class.Rd | 14 Seurat-4.0.0/Seurat/man/SampleUMI.Rd | 2 Seurat-4.0.0/Seurat/man/SaveAnnoyIndex.Rd | 1 Seurat-4.0.0/Seurat/man/ScaleData.Rd | 1 Seurat-4.0.0/Seurat/man/ScaleFactors.Rd | 3 Seurat-4.0.0/Seurat/man/ScoreJackStraw.Rd | 1 Seurat-4.0.0/Seurat/man/SelectIntegrationFeatures.Rd | 1 Seurat-4.0.0/Seurat/man/SetIntegrationData.Rd | 5 Seurat-4.0.0/Seurat/man/Seurat-class.Rd | 47 Seurat-4.0.0/Seurat/man/Seurat-package.Rd | 43 Seurat-4.0.0/Seurat/man/SeuratCommand-class.Rd | 23 Seurat-4.0.0/Seurat/man/SeuratTheme.Rd | 1 Seurat-4.0.0/Seurat/man/SlideSeq-class.Rd | 12 Seurat-4.0.0/Seurat/man/SpatialImage-class.Rd | 93 Seurat-4.0.0/Seurat/man/SpatialPlot.Rd | 2 Seurat-4.0.0/Seurat/man/SplitObject.Rd | 2 Seurat-4.0.0/Seurat/man/SubsetByBarcodeInflections.Rd | 2 Seurat-4.0.0/Seurat/man/TopCells.Rd | 2 Seurat-4.0.0/Seurat/man/TopFeatures.Rd | 2 Seurat-4.0.0/Seurat/man/TopNeighbors.Rd | 1 Seurat-4.0.0/Seurat/man/TransferAnchorSet-class.Rd |only Seurat-4.0.0/Seurat/man/TransferData.Rd | 57 Seurat-4.0.0/Seurat/man/UpdateSCTAssays.Rd |only Seurat-4.0.0/Seurat/man/UpdateSymbolList.Rd | 1 Seurat-4.0.0/Seurat/man/VariableFeaturePlot.Rd | 25 Seurat-4.0.0/Seurat/man/VisiumV1-class.Rd | 1 Seurat-4.0.0/Seurat/man/VizDimLoadings.Rd | 2 Seurat-4.0.0/Seurat/man/VlnPlot.Rd | 4 Seurat-4.0.0/Seurat/man/as.CellDataSet.Rd | 1 Seurat-4.0.0/Seurat/man/as.Seurat.Rd | 78 Seurat-4.0.0/Seurat/man/as.SingleCellExperiment.Rd | 1 Seurat-4.0.0/Seurat/man/as.sparse.Rd | 27 Seurat-4.0.0/Seurat/man/cc.genes.Rd | 1 Seurat-4.0.0/Seurat/man/cc.genes.updated.2019.Rd | 1 Seurat-4.0.0/Seurat/man/contrast-theory.Rd | 1 Seurat-4.0.0/Seurat/man/merge.SCTAssay.Rd |only Seurat-4.0.0/Seurat/man/reexports.Rd |only Seurat-4.0.0/Seurat/man/subset.AnchorSet.Rd |only Seurat-4.0.0/Seurat/src/RcppExports.cpp | 69 Seurat-4.0.0/Seurat/src/data_manipulation.cpp | 51 Seurat-4.0.0/Seurat/src/data_manipulation.h | 10 Seurat-4.0.0/Seurat/src/fast_NN_dist.cpp |only Seurat-4.0.0/Seurat/src/integration.cpp | 88 Seurat-4.0.0/Seurat/src/integration.h | 20 Seurat-4.0.0/Seurat/src/snn.cpp | 57 Seurat-4.0.0/Seurat/tests/testthat/test_data_manipulation.R | 14 Seurat-4.0.0/Seurat/tests/testthat/test_differential_expression.R | 64 Seurat-4.0.0/Seurat/tests/testthat/test_integratedata.R |only Seurat-4.0.0/Seurat/tests/testthat/test_integration.R |only Seurat-4.0.0/Seurat/tests/testthat/test_objects.R | 4 Seurat-4.0.0/Seurat/tests/testthat/test_preprocessing.R | 51 Seurat-4.0.0/Seurat/tests/testthat/test_transferdata.R |only Seurat-4.0.0/Seurat/tests/testthat/test_utilities.R | 132 265 files changed, 7990 insertions(+), 11252 deletions(-)
Title: Functions that Apply to Rows and Columns of Matrices (and to
Vectors)
Description: High-performing functions operating on rows and columns of matrices, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds(). Functions optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized. There are also optimized vector-based methods, e.g. binMeans(), madDiff() and weightedMedian().
Author: Henrik Bengtsson [aut, cre, cph],
Constantin Ahlmann-Eltze [ctb],
Hector Corrada Bravo [ctb],
Robert Gentleman [ctb],
Jan Gleixner [ctb],
Peter Hickey [ctb],
Ola Hossjer [ctb],
Harris Jaffee [ctb],
Dongcan Jiang [ctb],
Peter Langfelder [ctb],
Brian Montgomery [ctb],
Hugh Parsonage [ctb]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between matrixStats versions 0.57.0 dated 2020-09-25 and 0.58.0 dated 2021-01-29
DESCRIPTION | 18 - MD5 | 87 +++---- NEWS | 417 ++++++++++++++++++++---------------- R/000.DEPRECATION.R |only R/rowAlls.R | 28 +- R/rowAvgsPerColSet.R | 20 + R/rowCollapse.R | 8 R/rowCounts.R | 6 R/rowMads.R | 40 ++- R/rowProds.R | 2 R/rowQuantiles.R | 5 R/rowVars.R | 148 ++++++++++-- R/weightedMad.R | 66 ++++- R/weightedMean.R | 6 R/weightedMedian.R | 10 R/weightedVar.R | 11 R/x_OP_y.R | 7 R/zzz.R | 10 build/vignette.rds |binary inst/WORDLIST | 254 ++++++++++++++++++++- inst/benchmarking/colRowVars.md.rsp | 6 inst/doc/matrixStats-methods.html | 2 man/rowAvgsPerColSet.Rd | 14 - man/rowProds.Rd | 2 man/rowVars.Rd | 7 man/weightedMean.Rd | 5 man/weightedMedian.Rd | 5 man/x_OP_y.Rd | 7 src/weightedMean.c | 4 src/weightedMedian.c | 4 src/x_OP_y.c | 22 - tests/rowAvgsPerColSet.R | 44 +++ tests/rowMads.R | 75 ++++-- tests/rowMads_subset.R | 3 tests/rowQuantiles.R | 100 +++++--- tests/rowSds.R | 37 ++- tests/rowSds_subset.R | 19 + tests/rowVars.R | 162 ++++++++++++- tests/rowVars_subset.R | 19 + tests/rowWeightedMeans_subset.R | 4 tests/rowWeightedMedians_subset.R | 4 tests/weightedMean.R | 7 tests/weightedMedian.R | 28 ++ tests/x_OP_y.R | 2 tests/x_OP_y_subset.R | 2 45 files changed, 1271 insertions(+), 456 deletions(-)
Title: Sequential Rank Agreement
Description: Tools for analysing the agreement of two or more rankings of the same items. Examples are importance rankings of predictor variables and risk predictions of subjects. Benchmarks for agreement are computed based on random permutation and bootstrap.
Author: Claus Thorn Ekstrøm and Thomas Alexander Gerds
Maintainer: Claus Thorn Ekstrøm <ekstrom@sund.ku.dk>
Diff between SuperRanker versions 1.1.1 dated 2018-10-23 and 1.2.0 dated 2021-01-29
DESCRIPTION | 12 +++++++----- MD5 | 16 +++++++++------- man/SuperRanker.Rd | 1 - man/plot.sra.Rd | 11 +++++++++-- man/random_list_sra.Rd | 11 +++++++++-- man/sra.Rd | 26 +++++++++++++++++++------- man/sracpp.Rd | 3 +-- src/sra.cpp | 32 ++++++++++++++++++++++++++++++-- tests |only 9 files changed, 84 insertions(+), 28 deletions(-)
Title: An R Client for the 'FRED' API
Description: An R client for the 'Federal Reserve Economic Data'
('FRED') API <https://research.stlouisfed.org/docs/api/>. Functions
to retrieve economic time series and other data from 'FRED'.
Author: Sam Boysel [aut, cre],
Davis Vaughan [aut]
Maintainer: Sam Boysel <sboysel@gmail.com>
Diff between fredr versions 2.0.0 dated 2020-11-16 and 2.1.0 dated 2021-01-29
DESCRIPTION | 6 LICENSE | 2 MD5 | 34 - NEWS.md | 11 R/fredr_series_observations.R | 15 R/validation.R | 9 README.md | 30 - inst/doc/fredr-categories.html | 320 ++--------------- inst/doc/fredr-releases.html | 417 +++++------------------ inst/doc/fredr-series.html | 435 +++++------------------- inst/doc/fredr-sources.html | 283 +-------------- inst/doc/fredr-tags.html | 391 ++++----------------- inst/doc/fredr.R | 6 inst/doc/fredr.Rmd | 6 inst/doc/fredr.html | 355 +++---------------- tests/testthat/test-fredr_series_observations.R | 38 +- tests/testthat/test-validation.R | 4 vignettes/fredr.Rmd | 6 18 files changed, 530 insertions(+), 1838 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-12-24 3.1.2
2016-06-13 3.1.0
2014-04-18 2.3.1
2013-01-23 2.2
2012-06-22 2.1
Title: Radiomics Image Analysis Toolbox for Medial Images
Description: Radiomics image analysis toolbox for 2D and 3D radiological images. RIA supports DICOM, NIfTI and
nrrd file formats. RIA calculates first-order, gray level co-occurrence matrix,
gray level run length matrix and geometry-based statistics. Almost all calculations are done
using vectorized formulas to optimize run speeds. Calculation of several thousands of parameters
only takes minutes on a single core of a conventional PC.
Author: Marton Kolossvary [aut, cre]
Maintainer: Marton Kolossvary <marton.kolossvary@gmail.com>
Diff between RIA versions 1.4.3 dated 2021-01-08 and 1.5.0 dated 2021-01-29
DESCRIPTION | 10 MD5 | 112 - R/automatic_name.R | 54 R/change_to.R | 52 R/check_data_in.R | 84 - R/create_header.R | 76 R/create_header_nifti.R | 74 R/create_header_nrrd.R | 78 R/crop.R | 192 +- R/discretize.R | 294 +-- R/first_order.R | 484 +++--- R/first_order_plus.R | 218 +- R/geometry.R | 448 ++--- R/geometry_plus.R | 452 ++--- R/glcm.R | 373 ++-- R/glcm_all.R | 350 ++-- R/glcm_stat.R | 1852 +++++++++++------------ R/glcm_stat_all.R | 444 ++--- R/glcm_stat_plus.R | 914 +++++------ R/glrlm.R | 480 +++--- R/glrlm_all.R | 240 +-- R/glrlm_stat.R | 302 +-- R/glrlm_stat_all.R | 322 ++-- R/glrlm_stat_plus.R | 214 +- R/list_to_df.R | 36 R/load_dicom.R | 594 +++---- R/load_nifti.R | 526 +++--- R/load_nrrd.R | 522 +++--- R/radiomics_all.R | 174 +- R/save_RIA.R | 106 - R/save_RIA_base.R | 58 R/shift_to.R | 62 R/volume_to_dataframe.R | 130 - build/vignette.rds |binary inst/doc/RIA.R | 376 ++-- inst/doc/RIA.Rmd | 963 ++++++------ inst/doc/RIA.html | 3782 +++++++++++++++++++++++------------------------- man/DICOM_codes.Rd | 4 man/NRS.Rd | 4 man/Non_NRS.Rd | 4 man/discretize.Rd | 10 man/first_order.Rd | 10 man/geometry.Rd | 16 man/glcm.Rd | 17 man/glcm_all.Rd | 14 man/glcm_stat.Rd | 10 man/glcm_stat_all.Rd | 7 man/glrlm.Rd | 14 man/glrlm_all.Rd | 10 man/glrlm_stat.Rd | 10 man/glrlm_stat_all.Rd | 7 man/load_dicom.Rd | 30 man/load_nifti.Rd | 19 man/load_nrrd.Rd | 20 man/radiomics_all.Rd | 14 man/save_RIA.Rd | 10 vignettes/RIA.Rmd | 963 ++++++------ 57 files changed, 8494 insertions(+), 8147 deletions(-)
Title: Download and Manage Optional Package Data
Description: Manage optional data for your package. The data can be hosted anywhere, and you have to give a Uniform Resource Locator (URL) for each file. File integrity checks are supported. This is useful for package authors who need to ship more than the 5 Megabyte of data currently allowed by the the Comprehensive R Archive Network (CRAN).
Author: Tim Schäfer [aut, cre] (<https://orcid.org/0000-0002-3683-8070>)
Maintainer: Tim Schäfer <ts+code@rcmd.org>
Diff between pkgfilecache versions 0.1.2 dated 2019-11-29 and 0.1.3 dated 2021-01-29
DESCRIPTION | 8 MD5 | 13 build/vignette.rds |binary inst/doc/pkgfilecache.R | 16 - inst/doc/pkgfilecache.html | 426 ++++++++------------------------ man/download_files_with_md5_mismatch.Rd | 8 man/ensure_files_available.Rd | 12 tests/testthat/teardown-cran.R |only 8 files changed, 143 insertions(+), 340 deletions(-)
Title: Internet Memes for Data Analysts
Description: Generates internet memes that optionally include a superimposed inset plot and other atypical features,
combining the visual impact of an attention-grabbing meme with graphic results of data analysis.
The package differs from related packages that focus on imitating and reproducing standard memes.
Some packages do this by interfacing with online meme generators whereas others achieve this natively.
This package takes the latter approach. It does not interface with online meme generators or require any authentication with external websites.
It reads images directly from local files or via URL and meme generation is done by the package.
While this is similar to the 'meme' package available on CRAN, it differs in that the focus is on
allowing for non-standard meme layouts and hybrids of memes mixed with graphs.
While this package can be used to make basic memes like an online meme generator would produce,
it caters primarily to hybrid graph-meme plots where the meme presentation can be seen as a backdrop highlighting
foreground graphs of data analysis results.
The package also provides support for an arbitrary number of meme text labels with arbitrary size, position and other attributes
rather than restricting to the standard top and/or bottom text placement.
This is useful for proper aesthetic interleaving of plots of data between meme image backgrounds and overlain text labels.
The package offers a selection of templates for graph placement and appearance with respect to the underlying meme.
Graph templates also permit additional template-specific customization.
Animated gif support is provided but this is optional and functional only if the 'magick' package is installed.
'magick' is not required unless gif functionality is desired.
Author: Matthew Leonawicz [aut, cre]
Maintainer: Matthew Leonawicz <mfleonawicz@gmail.com>
Diff between memery versions 0.5.3 dated 2021-01-25 and 0.5.4 dated 2021-01-29
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/meme.R | 5 ++++- man/meme.Rd | 5 ++++- tests/testthat/test-meme.R | 1 + 6 files changed, 21 insertions(+), 10 deletions(-)
Title: Apply Mapping Functions in Parallel using Futures
Description: Implementations of the family of map() functions
from 'purrr' that can be resolved using any 'future'-supported
backend, e.g. parallel on the local machine or distributed on a
compute cluster.
Author: Davis Vaughan [aut, cre],
Matt Dancho [aut],
RStudio [cph]
Maintainer: Davis Vaughan <davis@rstudio.com>
Diff between furrr versions 0.2.1 dated 2020-10-21 and 0.2.2 dated 2021-01-29
furrr-0.2.1/furrr/tests/testthat/helper-deprecation.R |only furrr-0.2.2/furrr/DESCRIPTION | 9 +++-- furrr-0.2.2/furrr/MD5 | 14 ++++---- furrr-0.2.2/furrr/NEWS.md | 4 ++ furrr-0.2.2/furrr/R/furrr-options.R | 4 ++ furrr-0.2.2/furrr/README.md | 22 +++++++------- furrr-0.2.2/furrr/tests/testthat/_snaps |only furrr-0.2.2/furrr/tests/testthat/helper-furrr-test-that.R | 6 +++ furrr-0.2.2/furrr/tests/testthat/test-deprecation.R | 18 +++++++---- 9 files changed, 48 insertions(+), 29 deletions(-)
Title: Estimation Methods for Markets in Equilibrium and Disequilibrium
Description: Provides estimation methods for markets in equilibrium and
disequilibrium. Specifically, it supports the estimation of an equilibrium and
four disequilibrium models with both correlated and independent shocks.
It also provides post-estimation analysis tools, such as aggregation and
marginal effects calculations. The estimation methods are based on full
information maximum likelihood techniques given in Maddala and Nelson (1974)
<doi:10.2307/1914215>. They are implemented using the analytic derivative
expressions calculated in Karapanagiotis (2020) <doi:10.2139/ssrn.3525622>.
The equilibrium estimation constitutes a special case of
a system of simultaneous equations. The disequilibrium models, instead, replace
the market clearing condition with a short side rule and
allow for different specifications of price dynamics.
Author: Pantelis Karapanagiotis [aut, cre]
(<https://orcid.org/0000-0001-9871-1908>)
Maintainer: Pantelis Karapanagiotis <pikappa.devel@gmail.com>
Diff between diseq versions 0.1.1 dated 2021-01-26 and 0.1.2 dated 2021-01-29
diseq-0.1.1/diseq/src/Makevars |only diseq-0.1.2/diseq/DESCRIPTION | 15 +- diseq-0.1.2/diseq/MD5 | 37 ++--- diseq-0.1.2/diseq/NAMESPACE | 2 diseq-0.1.2/diseq/NEWS.md | 8 + diseq-0.1.2/diseq/R/diseq.R | 2 diseq-0.1.2/diseq/README.md | 5 diseq-0.1.2/diseq/build/partial.rdb |binary diseq-0.1.2/diseq/cleanup |only diseq-0.1.2/diseq/configure |only diseq-0.1.2/diseq/configure.ac |only diseq-0.1.2/diseq/inst/doc/basic_usage.html | 8 - diseq-0.1.2/diseq/inst/doc/market_clearing_assessment.html | 8 - diseq-0.1.2/diseq/src/Makevars.in |only diseq-0.1.2/diseq/src/Makevars.win | 6 diseq-0.1.2/diseq/src/equilibrium.cpp | 18 -- diseq-0.1.2/diseq/tests/testthat/helper-common.R | 5 diseq-0.1.2/diseq/tests/testthat/test-basic.R | 42 +++++- diseq-0.1.2/diseq/tests/testthat/test-deterministic_adjustment.R | 38 ++++- diseq-0.1.2/diseq/tests/testthat/test-directional.R | 30 +++- diseq-0.1.2/diseq/tests/testthat/test-equilibrium.R | 69 +++++----- diseq-0.1.2/diseq/tests/testthat/test-stochastic_adjustment.R | 35 +++-- 22 files changed, 204 insertions(+), 124 deletions(-)
Title: Interface Between GRASS 7 Geographical Information System and R
Description: Interpreted interface between 'GRASS' 7 geographical
information system and R, based on starting R from within the 'GRASS' 'GIS'
environment, or running free-standing R in a temporary 'GRASS' location;
the package provides facilities for using all 'GRASS' commands from the
R command line. This package may not be used for 'GRASS' 6, for which
'spgrass6' should be used.
Author: Roger Bivand [cre, aut] (<https://orcid.org/0000-0003-2392-6140>),
Rainer Krug [ctb] (<https://orcid.org/0000-0002-7490-0066>),
Markus Neteler [ctb] (<https://orcid.org/0000-0003-1916-1966>),
Sebastian Jeworutzki [ctb] (<https://orcid.org/0000-0002-2671-5253>),
Floris Vanderhaeghe [ctb] (<https://orcid.org/0000-0002-6378-6229>)
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between rgrass7 versions 0.2-4 dated 2021-01-07 and 0.2-5 dated 2021-01-29
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 10 +++++++--- R/initGRASS.R | 6 ++++-- R/xml1.R | 2 +- man/initGRASS.Rd | 2 +- 6 files changed, 22 insertions(+), 16 deletions(-)
Title: 'date' C++ Header Library for Date and Time Functionality
Description: A header-only C++ library is provided with support
for dates, time zones, ISO weeks, Julian dates, and Islamic dates.
'date' offers extensive date and time functionality for the C++11,
C++14 and C++17 standards and was written by Howard Hinnant and released
under the MIT license. A slightly modified version has been accepted
(along with 'tz.h') as part of C++20. This package regroups all
header files from the upstream repository by Howard Hinnant so that
other R packages can use them in their C++ code. At present, few of
the types have explicit 'Rcpp' wrappers though these may be added as
needed.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppDate versions 0.0.1 dated 2020-03-24 and 0.0.2 dated 2021-01-29
ChangeLog | 32 +++++++ DESCRIPTION | 26 +++--- MD5 | 23 ++--- README.md | 7 + build/partial.rdb |binary inst/NEWS.Rd |only inst/include/date.h | 121 ++++++++++++++++++++++------- inst/include/julian.h | 20 +++- inst/include/ptz.h | 183 ++++++++++++++++++++++++++++++++++++++++++--- inst/include/solar_hijri.h | 22 +++-- inst/include/tz.h | 96 +++++++++++------------ inst/include/tz_private.h | 8 - man/RcppDate-package.Rd | 2 13 files changed, 407 insertions(+), 133 deletions(-)
Title: Interactive Cluster Heat Maps Using 'plotly' and 'ggplot2'
Description: Create interactive cluster 'heatmaps' that can be saved as a stand-
alone HTML file, embedded in 'R Markdown' documents or in a 'Shiny' app, and
available in the 'RStudio' viewer pane. Hover the mouse pointer over a cell to
show details or drag a rectangle to zoom. A 'heatmap' is a popular graphical
method for visualizing high-dimensional data, in which a table of numbers
are encoded as a grid of colored cells. The rows and columns of the matrix
are ordered to highlight patterns and are often accompanied by 'dendrograms'.
'Heatmaps' are used in many fields for visualizing observations, correlations,
missing values patterns, and more. Interactive 'heatmaps' allow the inspection
of specific value by hovering the mouse over a cell, as well as zooming into
a region of the 'heatmap' by dragging a rectangle around the relevant area.
This work is based on the 'ggplot2' and 'plotly.js' engine. It produces
similar 'heatmaps' to 'heatmap.2' with the advantage of speed
('plotly.js' is able to handle larger size matrix), the ability to zoom from
the 'dendrogram' panes, and the placing of factor variables in the sides of the
'heatmap'.
Author: Tal Galili [aut, cre, cph] (https://www.r-statistics.com),
Alan O'Callaghan [aut] (https://github.com/Alanocallaghan),
Jonathan Sidi [ctb] (https://github.com/yonicd),
Yoav Benjamini [ths]
Maintainer: Tal Galili <tal.galili@gmail.com>
Diff between heatmaply versions 1.1.1 dated 2020-08-25 and 1.2.0 dated 2021-01-29
DESCRIPTION | 12 MD5 | 24 - NAMESPACE | 1 NEWS | 13 R/heatmaply.R | 100 ++-- R/heatmapr.R | 4 README.md | 21 inst/doc/heatmaply.R | 77 +-- inst/doc/heatmaply.Rmd | 31 - inst/doc/heatmaply.html | 1149 +++--------------------------------------------- man/heatmaply.Rd | 28 - man/heatmapr.Rd | 2 vignettes/heatmaply.Rmd | 31 - 13 files changed, 289 insertions(+), 1204 deletions(-)
Title: Interface to 'fastai'
Description: The 'fastai' <https://docs.fast.ai/index.html> library
simplifies training fast and accurate neural networks
using modern best practices. It is based on research
in to deep learning best practices undertaken
at 'fast.ai', including 'out of the box' support
for vision, text, tabular, audio, time series, and
collaborative filtering models.
Author: Turgut Abdullayev [ctb, cre, cph, aut]
Maintainer: Turgut Abdullayev <turqut.a.314@gmail.com>
Diff between fastai versions 2.0.3 dated 2021-01-09 and 2.0.4 dated 2021-01-29
fastai-2.0.3/fastai/tests/testthat/test-model_load.R |only fastai-2.0.4/fastai/DESCRIPTION | 8 fastai-2.0.4/fastai/MD5 | 87 +- fastai-2.0.4/fastai/NAMESPACE | 2 fastai-2.0.4/fastai/NEWS.md | 8 fastai-2.0.4/fastai/R/Learner_fits.R | 23 fastai-2.0.4/fastai/R/audio_core_signal.R | 37 - fastai-2.0.4/fastai/R/blurr_hugging_face.R | 37 - fastai-2.0.4/fastai/R/freeze.R | 26 fastai-2.0.4/fastai/R/image_loaders.R | 8 fastai-2.0.4/fastai/R/import_modules.R | 4 fastai-2.0.4/fastai/R/install_fastai.R | 25 fastai-2.0.4/fastai/R/package.R | 6 fastai-2.0.4/fastai/README.md | 5 fastai-2.0.4/fastai/inst/doc/Basic_Tabular.html | 276 +------- fastai-2.0.4/fastai/inst/doc/audio.html | 308 +-------- fastai-2.0.4/fastai/inst/doc/audio2tf.html | 278 +------- fastai-2.0.4/fastai/inst/doc/basic_img_class.html | 268 +------- fastai-2.0.4/fastai/inst/doc/callbacks.html | 266 +------- fastai-2.0.4/fastai/inst/doc/catalyst.html | 244 ------- fastai-2.0.4/fastai/inst/doc/custom_img.html | 340 ++-------- fastai-2.0.4/fastai/inst/doc/data_aug.html | 366 ++--------- fastai-2.0.4/fastai/inst/doc/gpt.html | 330 ++-------- fastai-2.0.4/fastai/inst/doc/head_pose.html | 340 ++-------- fastai-2.0.4/fastai/inst/doc/lightning.html | 234 ------- fastai-2.0.4/fastai/inst/doc/low.html | 404 +++--------- fastai-2.0.4/fastai/inst/doc/medical_dcm.html | 292 +-------- fastai-2.0.4/fastai/inst/doc/migrating_ignite.html | 230 ------- fastai-2.0.4/fastai/inst/doc/migrating_pytorch.html | 232 ------- fastai-2.0.4/fastai/inst/doc/multilabel.html | 328 ++-------- fastai-2.0.4/fastai/inst/doc/obj_detect.html | 290 +-------- fastai-2.0.4/fastai/inst/doc/optimizer.html | 592 ++++++------------- fastai-2.0.4/fastai/inst/doc/question_answering.html | 374 ++---------- fastai-2.0.4/fastai/inst/doc/super_res_gan.html | 304 +-------- fastai-2.0.4/fastai/inst/doc/textclassification.R | 2 fastai-2.0.4/fastai/inst/doc/textclassification.Rmd | 2 fastai-2.0.4/fastai/inst/doc/textclassification.html | 284 +-------- fastai-2.0.4/fastai/inst/doc/textsummarize.html | 338 ++-------- fastai-2.0.4/fastai/inst/doc/time_series.html | 280 +------- fastai-2.0.4/fastai/man/AudioTensor_create.Rd | 26 fastai-2.0.4/fastai/man/HF_TextBlock.Rd | 27 fastai-2.0.4/fastai/man/install_fastai.Rd | 9 fastai-2.0.4/fastai/man/os_environ_tpu.Rd |only fastai-2.0.4/fastai/man/to_xla.Rd |only fastai-2.0.4/fastai/man/xla.Rd |only fastai-2.0.4/fastai/tests/testthat/test-collab.R |only fastai-2.0.4/fastai/vignettes/textclassification.Rmd | 2 47 files changed, 1518 insertions(+), 6024 deletions(-)
Title: Topic Models
Description: Provides an interface to the C code for Latent Dirichlet
Allocation (LDA) models and Correlated Topics Models
(CTM) by David M. Blei and co-authors and the C++ code
for fitting LDA models using Gibbs sampling by Xuan-Hieu
Phan and co-authors.
Author: Bettina Grün [aut, cre] (<https://orcid.org/0000-0001-7265-4773>),
Kurt Hornik [aut] (<https://orcid.org/0000-0003-4198-9911>),
David M Blei [ctb, cph] (VEM estimation of LDA and CTM),
John D Lafferty [ctb, cph] (VEM estimation of CTM),
Xuan-Hieu Phan [ctb, cph] (MCMC estimation of LDA),
Makoto Matsumoto [ctb, cph] (Mersenne Twister RNG),
Takuji Nishimura [ctb, cph] (Mersenne Twister RNG),
Shawn Cokus [ctb] (Mersenne Twister RNG)
Maintainer: Bettina Grün <Bettina.Gruen@R-project.org>
Diff between topicmodels versions 0.2-11 dated 2020-04-19 and 0.2-12 dated 2021-01-29
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- build/vignette.rds |binary inst/NEWS.Rd | 9 +++++++-- inst/doc/topicmodels.R | 5 ++--- inst/doc/topicmodels.Rnw | 22 +++++++++++----------- inst/doc/topicmodels.pdf |binary vignettes/topicmodels.Rnw | 22 +++++++++++----------- vignettes/topicmodels.bib | 38 +++++++++++++++++++------------------- 9 files changed, 63 insertions(+), 59 deletions(-)
Title: Bitmap Images / Pixel Maps
Description: Functions for import, export, plotting and other
manipulations of bitmapped images.
Author: Roger Bivand, Friedrich Leisch and Martin Maechler
Maintainer: Friedrich Leisch <Friedrich.Leisch@R-project.org>
Diff between pixmap versions 0.4-11 dated 2011-07-19 and 0.4-12 dated 2021-01-29
DESCRIPTION | 15 ++++++++------- MD5 |only NAMESPACE | 5 ++++- NEWS | 5 +++++ man/pixmap-class.Rd | 2 ++ 5 files changed, 19 insertions(+), 8 deletions(-)
Title: Create, Build and Maintain Packages
Description: Helper functions for package creation, building and
maintenance. Designed to work with a build system such as 'GNU make' or
package 'fakemake' to help you to conditionally work through the stages of
package development (such as spell checking, linting, testing, before
building and checking a package).
Author: Andreas Dominik Cullmann [aut, cre]
Maintainer: Andreas Dominik Cullmann <fvafrcu@mailbox.org>
Diff between packager versions 1.9.0 dated 2021-01-21 and 1.10.0 dated 2021-01-29
DESCRIPTION | 14 - MD5 | 39 +-- NAMESPACE | 1 NEWS.md | 34 ++ R/compare.R |only R/extract_vignette_code.R | 7 R/git.R | 18 + R/makelist.R | 74 ++++-- README.md | 2 inst/NEWS.rd | 35 ++- inst/doc/An_Introduction_to_packager.R | 24 -- inst/doc/An_Introduction_to_packager.Rasciidoc | 29 +- inst/doc/An_Introduction_to_packager.html | 280 ++++++++++-------------- inst/runit_tests/test_devtools_modified.R | 2 inst/runit_tests/test_internal.R | 16 - inst/runit_tests/test_tools.R | 33 +- inst/templates/dot_gitlab-ci.yml | 2 inst/templates/make.R | 2 inst/templates/nomakefile | 23 - inst/vignettes_code |only man/git_diff.Rd |only vignettes/An_Introduction_to_packager.Rasciidoc | 29 +- 22 files changed, 357 insertions(+), 307 deletions(-)
Title: Machine Learning Benchmark Problems
Description: A collection of artificial and real-world machine learning
benchmark problems, including, e.g., several
data sets from the UCI repository.
Author: Friedrich Leisch and Evgenia Dimitriadou.
Maintainer: Friedrich Leisch <Friedrich.Leisch@R-project.org>
Diff between mlbench versions 2.1-1 dated 2012-07-10 and 2.1-3 dated 2021-01-29
mlbench-2.1-1/mlbench/Data-Administration.R |only mlbench-2.1-3/mlbench/DESCRIPTION | 13 +++++++------ mlbench-2.1-3/mlbench/MD5 | 13 +++++++------ mlbench-2.1-3/mlbench/NAMESPACE | 3 +++ mlbench-2.1-3/mlbench/NEWS | 9 +++++++++ mlbench-2.1-3/mlbench/R/mlbench-class.R | 2 +- mlbench-2.1-3/mlbench/R/mlbench-regression.R | 2 +- mlbench-2.1-3/mlbench/inst/notes |only mlbench-2.1-3/mlbench/src/init.c |only 9 files changed, 28 insertions(+), 14 deletions(-)
Title: Gaussian Process for Functional Data Analysis
Description: Functionalities for modelling functional data with
multidimensional inputs, multivariate functional data, and non-separable
and/or non-stationary covariance structure of function-valued processes.
In addition, there are functionalities for functional regression models where
the mean function depends on scalar and/or functional covariates and
the covariance structure depends on functional covariates.
The development version of the package can be found on
<https://github.com/gpfda/GPFDA-dev>.
Author: Jian Qing Shi, Yafeng Cheng, Evandro Konzen
Maintainer: Evandro Konzen <gpfda.r@gmail.com>
Diff between GPFDA versions 3.1.0 dated 2021-01-26 and 3.1.1 dated 2021-01-29
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/gpfr.functions6.R | 40 ++++++++++++++++++---------------------- 3 files changed, 24 insertions(+), 28 deletions(-)
More information about EvidenceSynthesis at CRAN
Permanent link
Title: Convert Statistical Objects into Tidy Tibbles
Description: Summarizes key information about statistical
objects in tidy tibbles. This makes it easy to report results, create
plots and consistently work with large numbers of models at once.
Broom provides three verbs that each provide different types of
information about a model. tidy() summarizes information about model
components such as coefficients of a regression. glance() reports
information about an entire model, such as goodness of fit measures
like AIC and BIC. augment() adds information about individual
observations to a dataset, such as fitted values or influence
measures.
Author: David Robinson [aut],
Alex Hayes [aut, cre] (<https://orcid.org/0000-0002-4985-5160>),
Simon Couch [aut],
Indrajeet Patil [ctb] (<https://orcid.org/0000-0003-1995-6531>),
Derek Chiu [ctb],
Matthieu Gomez [ctb],
Boris Demeshev [ctb],
Dieter Menne [ctb],
Benjamin Nutter [ctb],
Luke Johnston [ctb],
Ben Bolker [ctb],
Francois Briatte [ctb],
Jeffrey Arnold [ctb],
Jonah Gabry [ctb],
Luciano Selzer [ctb],
Gavin Simpson [ctb],
Jens Preussner [ctb],
Jay Hesselberth [ctb],
Hadley Wickham [ctb],
Matthew Lincoln [ctb],
Alessandro Gasparini [ctb],
Lukasz Komsta [ctb],
Frederick Novometsky [ctb],
Wilson Freitas [ctb],
Michelle Evans [ctb],
Jason Cory Brunson [ctb],
Simon Jackson [ctb],
Ben Whalley [ctb],
Karissa Whiting [ctb],
Yves Rosseel [ctb],
Michael Kuehn [ctb],
Jorge Cimentada [ctb],
Erle Holgersen [ctb],
Karl Dunkle Werner [ctb] (<https://orcid.org/0000-0003-0523-7309>),
Ethan Christensen [ctb],
Steven Pav [ctb],
Paul PJ [ctb],
Ben Schneider [ctb],
Patrick Kennedy [ctb],
Lily Medina [ctb],
Brian Fannin [ctb],
Jason Muhlenkamp [ctb],
Matt Lehman [ctb],
Bill Denney [ctb] (<https://orcid.org/0000-0002-5759-428X>),
Nic Crane [ctb],
Andrew Bates [ctb],
Vincent Arel-Bundock [ctb] (<https://orcid.org/0000-0003-2042-7063>),
Hideaki Hayashi [ctb],
Luis Tobalina [ctb],
Annie Wang [ctb],
Wei Yang Tham [ctb],
Clara Wang [ctb],
Abby Smith [ctb] (<https://orcid.org/0000-0002-3207-0375>),
Jasper Cooper [ctb] (<https://orcid.org/0000-0002-8639-3188>),
E Auden Krauska [ctb] (<https://orcid.org/0000-0002-1466-5850>),
Alex Wang [ctb],
Malcolm Barrett [ctb] (<https://orcid.org/0000-0003-0299-5825>),
Charles Gray [ctb] (<https://orcid.org/0000-0002-9978-011X>),
Jared Wilber [ctb],
Vilmantas Gegzna [ctb] (<https://orcid.org/0000-0002-9500-5167>),
Eduard Szoecs [ctb],
Frederik Aust [ctb] (<https://orcid.org/0000-0003-4900-788X>),
Angus Moore [ctb],
Nick Williams [ctb],
Marius Barth [ctb] (<https://orcid.org/0000-0002-3421-6665>),
Bruna Wundervald [ctb] (<https://orcid.org/0000-0001-8163-220X>),
Joyce Cahoon [ctb] (<https://orcid.org/0000-0001-7217-4702>),
Grant McDermott [ctb] (<https://orcid.org/0000-0001-7883-8573>),
Kevin Zarca [ctb],
Shiro Kuriwaki [ctb] (<https://orcid.org/0000-0002-5687-2647>),
Lukas Wallrich [ctb] (<https://orcid.org/0000-0003-2121-5177>),
James Martherus [ctb] (<https://orcid.org/0000-0002-8285-3300>),
Chuliang Xiao [ctb] (<https://orcid.org/0000-0002-8466-9398>),
Joseph Larmarange [ctb],
Max Kuhn [ctb],
Michal Bojanowski [ctb],
Hakon Malmedal [ctb],
Clara Wang [ctb],
Sergio Oller [ctb],
Luke Sonnet [ctb],
Jim Hester [ctb],
Cory Brunson [ctb],
Ben Schneider [ctb],
Bernie Gray [ctb] (<https://orcid.org/0000-0001-9190-6032>),
Mara Averick [ctb],
Aaron Jacobs [ctb],
Andreas Bender [ctb],
Sven Templer [ctb],
Paul-Christian Buerkner [ctb],
Matthew Kay [ctb],
Erwan Le Pennec [ctb],
Johan Junkka [ctb],
Hao Zhu [ctb],
Benjamin Soltoff [ctb],
Zoe Wilkinson Saldana [ctb],
Tyler Littlefield [ctb],
Charles T. Gray [ctb],
Shabbh E. Banks [ctb],
Serina Robinson [ctb],
Roger Bivand [ctb],
Riinu Ots [ctb],
Nicholas Williams [ctb],
Nina Jakobsen [ctb],
Michael Weylandt [ctb],
Lisa Lendway [ctb],
Karl Hailperin [ctb],
Josue Rodriguez [ctb],
Jenny Bryan [ctb],
Chris Jarvis [ctb],
Greg Macfarlane [ctb],
Brian Mannakee [ctb],
Drew Tyre [ctb],
Shreyas Singh [ctb],
Laurens Geffert [ctb],
Hong Ooi [ctb],
Henrik Bengtsson [ctb],
Eduard Szocs [ctb],
David Hugh-Jones [ctb],
Matthieu Stigler [ctb],
Hugo Tavares [ctb] (<https://orcid.org/0000-0001-9373-2726>),
R. Willem Vervoort [ctb],
Brenton M. Wiernik [ctb]
Maintainer: Alex Hayes <alexpghayes@gmail.com>
Diff between broom versions 0.7.3 dated 2020-12-16 and 0.7.4 dated 2021-01-29
DESCRIPTION | 33 ++++----- MD5 | 103 +++++++++++++++++------------- NAMESPACE | 16 +++- NEWS.md | 26 +++++++ R/broom-package.R | 8 -- R/broom.R | 11 --- R/btergm-tidiers.R | 12 +-- R/car-tidiers.R | 36 ++++++++++ R/cmprsk-tidiers.R |only R/emmeans-tidiers.R | 5 - R/ergm-tidiers.R | 6 - R/lfe-tidiers.R |only R/mediate-tidiers.R | 1 R/mgcv-tidiers.R | 33 +++++++++ R/nnet-tidiers.R | 34 +++++---- R/rchoice-tidiers.R |only R/rma-tidiers.R | 2 R/speedglm-speedglm-tidiers.R | 10 +- R/stats-anova-tidiers.R | 21 ++++-- R/stats-lm-tidiers.R | 2 R/stats-mlm-tidiers.R | 3 R/survey-tidiers.R | 1 R/survival-coxph-tidiers.R | 32 ++------- R/tseries-tidiers.R | 16 +++- R/utilities.R | 9 ++ R/vars-tidiers.R |only inst/doc/adding-tidiers.html | 4 - inst/doc/available-methods.html | 120 +++++++++++++++++++++-------------- inst/doc/bootstrapping.html | 4 - inst/doc/broom.html | 28 ++++---- inst/doc/broom_and_dplyr.html | 10 +- man/augment.felm.Rd |only man/augment.gam.Rd |only man/durbinWatsonTest_tidiers.Rd | 3 man/glance.Rchoice.Rd |only man/glance.crr.Rd |only man/glance.felm.Rd |only man/glance.gam.Rd | 1 man/glance.svyglm.Rd | 1 man/glance.varest.Rd |only man/leveneTest_tidiers.Rd |only man/tidy.Rchoice.Rd |only man/tidy.anova.Rd | 9 +- man/tidy.aov.Rd | 3 man/tidy.aovlist.Rd | 3 man/tidy.crr.Rd |only man/tidy.felm.Rd |only man/tidy.gam.Rd | 1 man/tidy.garch.Rd | 11 ++- man/tidy.varest.Rd |only tests/testthat/test-car.R | 20 +++++ tests/testthat/test-cmprsk.R |only tests/testthat/test-emmeans.R | 10 +- tests/testthat/test-lfe.R |only tests/testthat/test-mgcv.R | 10 ++ tests/testthat/test-nnet.R | 12 ++- tests/testthat/test-rchoice.R |only tests/testthat/test-stats-lm.R | 12 +++ tests/testthat/test-survival-coxph.R | 23 ++++++ tests/testthat/test-tseries.R | 4 + tests/testthat/test-utilities.R | 7 ++ tests/testthat/test-vars.R |only 62 files changed, 481 insertions(+), 235 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-11-03 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-02-13 1.1.0
2018-07-30 1.0.3
Title: An Improved Version of WA-PLS
Description: The goal of this package is to provide an improved version of
WA-PLS (Weighted Averaging Partial Least Squares) by including the
tolerances of taxa and the frequency of the sampled climate variable.
This package also provides a way of leave-out cross-validation that
removes both the test site and sites that are both geographically
close and climatically close for each cycle, to avoid the risk of
pseudo-replication.
Author: Mengmeng Liu [aut] (<https://orcid.org/0000-0001-6250-0148>),
Iain Colin Prentice [aut] (<https://orcid.org/0000-0002-1296-6764>),
Cajo J. F. ter Braak [aut] (<https://orcid.org/0000-0002-0414-8745>),
Sandy P. Harrison [aut] (<https://orcid.org/0000-0001-5687-1903>),
Roberto Villegas-Diaz [aut, cre]
(<https://orcid.org/0000-0001-5036-8661>),
SPECIAL Research Group @ University of Reading [cph]
Maintainer: Roberto Villegas-Diaz <r.villegas-diaz@reading.ac.uk>
Diff between fxTWAPLS versions 0.0.4 dated 2020-11-10 and 0.0.5 dated 2021-01-29
DESCRIPTION | 34 ++++++-- MD5 | 27 +++--- NAMESPACE | 3 NEWS.md | 6 + R/fxTWAPLS.R | 192 +++++++++++++++++++++++++++++++++++++----------- R/utils.R | 15 +++ README.md | 68 +++++++++++++++-- inst/CITATION | 7 + man/cv.pr.w.Rd | 21 +++++ man/cv.w.Rd | 21 +++++ man/fxTWAPLS-package.Rd | 7 + man/get_distance.Rd | 5 + man/get_pseudo.Rd | 6 + man/pb.Rd |only man/sse.sample.Rd | 32 ++++++++ 15 files changed, 367 insertions(+), 77 deletions(-)
Title: Analyze Cricket Performances Based on Data from Cricsheet
Description: Analyzing performances of cricketers and cricket teams
based on 'yaml' match data from Cricsheet <https://cricsheet.org/>.
Author: Tinniam V Ganesh
Maintainer: Tinniam V Ganesh <tvganesh.85@gmail.com>
Diff between yorkr versions 0.0.17 dated 2021-01-11 and 0.0.18 dated 2021-01-29
yorkr-0.0.17/yorkr/R/Untitled.R |only yorkr-0.0.17/yorkr/R/rankBBLBatsmen.R |only yorkr-0.0.17/yorkr/R/rankBBLBowlers.R |only yorkr-0.0.17/yorkr/R/rankIPLBatsmen.R |only yorkr-0.0.17/yorkr/R/rankIPLBowlers.R |only yorkr-0.0.17/yorkr/R/rankNTBBatsmen.R |only yorkr-0.0.17/yorkr/R/rankNTBBowlers.R |only yorkr-0.0.17/yorkr/R/rankPSLBatsmen.R |only yorkr-0.0.17/yorkr/R/rankPSLBowlers.R |only yorkr-0.0.17/yorkr/R/rankWBBBatsmen.R |only yorkr-0.0.17/yorkr/R/rankWBBBowlers.R |only yorkr-0.0.17/yorkr/man/rankBBLBatsmen.Rd |only yorkr-0.0.17/yorkr/man/rankBBLBowlers.Rd |only yorkr-0.0.17/yorkr/man/rankIPLBatsmen.Rd |only yorkr-0.0.17/yorkr/man/rankIPLBowlers.Rd |only yorkr-0.0.17/yorkr/man/rankNTBBatsmen.Rd |only yorkr-0.0.17/yorkr/man/rankNTBBowlers.Rd |only yorkr-0.0.17/yorkr/man/rankPSLBatsmen.Rd |only yorkr-0.0.17/yorkr/man/rankPSLBowlers.Rd |only yorkr-0.0.17/yorkr/man/rankWBBBatsmen.Rd |only yorkr-0.0.17/yorkr/man/rankWBBBowlers.Rd |only yorkr-0.0.18/yorkr/DESCRIPTION | 10 - yorkr-0.0.18/yorkr/MD5 | 57 ++++----- yorkr-0.0.18/yorkr/NAMESPACE | 18 +-- yorkr-0.0.18/yorkr/R/getCPLBattingDetails.R |only yorkr-0.0.18/yorkr/R/getCPLBowlingDetails.R |only yorkr-0.0.18/yorkr/R/helper.R |only yorkr-0.0.18/yorkr/R/helper1.R |only yorkr-0.0.18/yorkr/R/helper2.R |only yorkr-0.0.18/yorkr/R/helper3.R |only yorkr-0.0.18/yorkr/R/rankODIBatsmen.R | 1 yorkr-0.0.18/yorkr/R/rankODIBowlers.R | 2 yorkr-0.0.18/yorkr/R/rankT20Batsmen.R | 61 ++++++---- yorkr-0.0.18/yorkr/R/rankT20Bowlers.R | 69 +++++++----- yorkr-0.0.18/yorkr/R/saveAllMatchesAllOppositionCPLT20.R |only yorkr-0.0.18/yorkr/R/saveAllMatchesBetween2CPLTeams.R |only yorkr-0.0.18/yorkr/man/getCPLBattingDetails.Rd |only yorkr-0.0.18/yorkr/man/getCPLBowlingDetails.Rd |only yorkr-0.0.18/yorkr/man/helper.Rd |only yorkr-0.0.18/yorkr/man/helper1.Rd |only yorkr-0.0.18/yorkr/man/helper2.Rd |only yorkr-0.0.18/yorkr/man/helper3.Rd |only yorkr-0.0.18/yorkr/man/rankODIBatsmen.Rd | 1 yorkr-0.0.18/yorkr/man/rankODIBowlers.Rd | 2 yorkr-0.0.18/yorkr/man/rankT20Batsmen.Rd | 14 +- yorkr-0.0.18/yorkr/man/rankT20Bowlers.Rd | 17 +- yorkr-0.0.18/yorkr/man/saveAllMatchesAllOppositionCPLT20.Rd |only yorkr-0.0.18/yorkr/man/saveAllMatchesBetween2CPLTeams.Rd |only 48 files changed, 138 insertions(+), 114 deletions(-)
Title: Analysis of Oceanographic Data
Description: Supports the analysis of Oceanographic data, including 'ADCP'
measurements, measurements made with 'argo' floats, 'CTD' measurements,
sectional data, sea-level time series, coastline and topographic data, etc.
Provides specialized functions for calculating seawater properties such as
potential temperature in either the 'UNESCO' or 'TEOS-10' equation of state.
Produces graphical displays that conform to the conventions of the
Oceanographic literature. This package is discussed extensively in
Dan Kelley's book Oceanographic Analysis with R, published
in 2018 by 'Springer-Verlag' with ISBN 978-1-4939-8842-6.
Author: Dan Kelley [aut, cre] (<https://orcid.org/0000-0001-7808-5911>),
Clark Richards [aut] (<https://orcid.org/0000-0002-7833-206X>),
Chantelle Layton [ctb] (<https://orcid.org/0000-0002-3199-5763>, curl()
coauthor),
British Geological Survey [ctb, cph] (magnetic-field subroutine)
Maintainer: Dan Kelley <Dan.Kelley@Dal.Ca>
Diff between oce versions 1.2-0 dated 2020-02-21 and 1.3-0 dated 2021-01-29
oce-1.2-0/oce/NEWS.md |only oce-1.2-0/oce/tests/t_equilib.dat.gz |only oce-1.2-0/oce/tests/testthat/test_ad2cp.R |only oce-1.2-0/oce/tests/tide.R |only oce-1.2-0/oce/tests/tide3.dat.gz |only oce-1.3-0/oce/DESCRIPTION | 17 oce-1.3-0/oce/MD5 | 740 ++-- oce-1.3-0/oce/NAMESPACE | 47 oce-1.3-0/oce/R/AllClass.R | 82 oce-1.3-0/oce/R/RcppExports.R | 4 oce-1.3-0/oce/R/accessors.R | 36 oce-1.3-0/oce/R/adp.R | 61 oce-1.3-0/oce/R/adp.nortek.R | 204 - oce-1.3-0/oce/R/adp.rdi.R | 20 oce-1.3-0/oce/R/adp.sontek.R | 2 oce-1.3-0/oce/R/adv.R | 27 oce-1.3-0/oce/R/adv.nortek.R | 2 oce-1.3-0/oce/R/adv.sontek.R | 6 oce-1.3-0/oce/R/air.R | 16 oce-1.3-0/oce/R/amsr.R | 291 + oce-1.3-0/oce/R/argo.R | 712 +++- oce-1.3-0/oce/R/astronomy.R |only oce-1.3-0/oce/R/bremen.R | 2 oce-1.3-0/oce/R/cm.R | 112 oce-1.3-0/oce/R/coastline.R | 222 - oce-1.3-0/oce/R/colors.R | 11 oce-1.3-0/oce/R/ctd.R | 656 ++-- oce-1.3-0/oce/R/ctd.itp.R | 4 oce-1.3-0/oce/R/ctd.odf.R | 14 oce-1.3-0/oce/R/ctd.odv.R |only oce-1.3-0/oce/R/ctd.sbe.R | 139 oce-1.3-0/oce/R/ctd.woce.R | 18 oce-1.3-0/oce/R/echosounder.R | 10 oce-1.3-0/oce/R/extdata.R | 8 oce-1.3-0/oce/R/g1sst.R | 9 oce-1.3-0/oce/R/geod.R | 4 oce-1.3-0/oce/R/gps.R | 22 oce-1.3-0/oce/R/imagep.R | 122 oce-1.3-0/oce/R/index.R | 5 oce-1.3-0/oce/R/ladp.R | 2 oce-1.3-0/oce/R/landsat.R | 29 oce-1.3-0/oce/R/lisst.R | 6 oce-1.3-0/oce/R/lobo.R | 14 oce-1.3-0/oce/R/map.R | 1876 ++++++----- oce-1.3-0/oce/R/met.R | 25 oce-1.3-0/oce/R/misc.R | 281 + oce-1.3-0/oce/R/moon.R | 252 - oce-1.3-0/oce/R/oce.R | 285 + oce-1.3-0/oce/R/odf.R | 138 oce-1.3-0/oce/R/processingLog.R | 2 oce-1.3-0/oce/R/rsk.R | 10 oce-1.3-0/oce/R/satellite.R | 13 oce-1.3-0/oce/R/sealevel.R | 20 oce-1.3-0/oce/R/section.R | 379 +- oce-1.3-0/oce/R/spectral.R | 2 oce-1.3-0/oce/R/sun.R | 18 oce-1.3-0/oce/R/sw.R | 25 oce-1.3-0/oce/R/tides.R | 106 oce-1.3-0/oce/R/topo.R | 315 + oce-1.3-0/oce/R/windrose.R | 5 oce-1.3-0/oce/R/xbt.R | 32 oce-1.3-0/oce/README.md | 146 oce-1.3-0/oce/build/partial.rdb |only oce-1.3-0/oce/build/vignette.rds |binary oce-1.3-0/oce/data/amsr.rda |only oce-1.3-0/oce/data/argo.rda |binary oce-1.3-0/oce/data/ocecolors.rda |binary oce-1.3-0/oce/data/section.rda |binary oce-1.3-0/oce/data/tidalCurrent.rda |only oce-1.3-0/oce/data/xbt.rda |binary oce-1.3-0/oce/inst/WORDLIST | 834 ++--- oce-1.3-0/oce/inst/doc/adp.Rmd | 4 oce-1.3-0/oce/inst/doc/adp.html | 454 -- oce-1.3-0/oce/inst/doc/ctd.Rmd | 4 oce-1.3-0/oce/inst/doc/ctd.html | 401 -- oce-1.3-0/oce/inst/doc/flags.Rmd | 10 oce-1.3-0/oce/inst/doc/flags.html | 390 -- oce-1.3-0/oce/inst/doc/map_projections.R | 9 oce-1.3-0/oce/inst/doc/map_projections.Rmd | 108 oce-1.3-0/oce/inst/doc/map_projections.html | 400 -- oce-1.3-0/oce/inst/doc/oce.Rmd | 574 ++- oce-1.3-0/oce/inst/doc/oce.html | 462 -- oce-1.3-0/oce/inst/doc/subclassing.Rmd | 4 oce-1.3-0/oce/inst/doc/subclassing.html | 737 +--- oce-1.3-0/oce/inst/po/de/LC_MESSAGES/R-oce.mo |binary oce-1.3-0/oce/inst/po/en@quot/LC_MESSAGES/R-oce.mo |binary oce-1.3-0/oce/inst/po/es/LC_MESSAGES/R-oce.mo |binary oce-1.3-0/oce/inst/po/fr/LC_MESSAGES/R-oce.mo |binary oce-1.3-0/oce/inst/po/zh/LC_MESSAGES/R-oce.mo |binary oce-1.3-0/oce/man/CTD_BCD2014666_008_1_DN.ODF.gz.Rd | 1 oce-1.3-0/oce/man/GMTOffsetFromTz.Rd | 8 oce-1.3-0/oce/man/ODFNames2oceNames.Rd | 9 oce-1.3-0/oce/man/T68fromT90.Rd | 4 oce-1.3-0/oce/man/T90fromT48.Rd | 4 oce-1.3-0/oce/man/T90fromT68.Rd | 4 oce-1.3-0/oce/man/addSpine.Rd |only oce-1.3-0/oce/man/adp.Rd | 3 oce-1.3-0/oce/man/adp_rdi.000.Rd | 4 oce-1.3-0/oce/man/adv.Rd | 3 oce-1.3-0/oce/man/airRho.Rd | 17 oce-1.3-0/oce/man/amsr-class.Rd | 9 oce-1.3-0/oce/man/amsr.Rd |only oce-1.3-0/oce/man/angle2hms.Rd |only oce-1.3-0/oce/man/argo-class.Rd | 3 oce-1.3-0/oce/man/argo.Rd | 17 oce-1.3-0/oce/man/argoJuldToTime.Rd |only oce-1.3-0/oce/man/argoNames2oceNames.Rd | 4 oce-1.3-0/oce/man/as.cm.Rd | 49 oce-1.3-0/oce/man/as.ctd.Rd | 10 oce-1.3-0/oce/man/as.met.Rd | 2 oce-1.3-0/oce/man/as.tidem.Rd | 1 oce-1.3-0/oce/man/beamToXyzAdv.Rd | 4 oce-1.3-0/oce/man/beamUnspreadAdp.Rd | 2 oce-1.3-0/oce/man/cm.Rd | 4 oce-1.3-0/oce/man/cnvName2oceName.Rd | 13 oce-1.3-0/oce/man/coastlineCut.Rd | 4 oce-1.3-0/oce/man/coastlineWorld.Rd | 1 oce-1.3-0/oce/man/colormap.Rd | 11 oce-1.3-0/oce/man/composite-amsr-method.Rd | 7 oce-1.3-0/oce/man/ctd-class.Rd | 2 oce-1.3-0/oce/man/ctd.Rd | 2 oce-1.3-0/oce/man/ctd.cnv.Rd | 1 oce-1.3-0/oce/man/ctdDecimate.Rd | 1 oce-1.3-0/oce/man/ctdFindProfiles.Rd | 46 oce-1.3-0/oce/man/ctdRaw.Rd | 2 oce-1.3-0/oce/man/ctdTrim.Rd | 1 oce-1.3-0/oce/man/curl.Rd | 4 oce-1.3-0/oce/man/d200321-001.ctd.Rd | 1 oce-1.3-0/oce/man/d201211_0011.cnv.Rd | 1 oce-1.3-0/oce/man/decodeHeaderNortek.Rd | 9 oce-1.3-0/oce/man/decodeTime.Rd | 4 oce-1.3-0/oce/man/defaultFlags.Rd | 11 oce-1.3-0/oce/man/download.amsr.Rd | 31 oce-1.3-0/oce/man/download.met.Rd | 15 oce-1.3-0/oce/man/download.topo.Rd | 113 oce-1.3-0/oce/man/drawIsopycnals.Rd | 21 oce-1.3-0/oce/man/drawPalette.Rd | 27 oce-1.3-0/oce/man/echosounder.Rd | 1 oce-1.3-0/oce/man/eclipticalToEquatorial.Rd | 15 oce-1.3-0/oce/man/equatorialToLocalHorizontal.Rd | 13 oce-1.3-0/oce/man/g1sst-class.Rd | 18 oce-1.3-0/oce/man/geodGc.Rd | 2 oce-1.3-0/oce/man/geodXy.Rd | 2 oce-1.3-0/oce/man/grad.Rd | 4 oce-1.3-0/oce/man/handleFlags-adp-method.Rd | 17 oce-1.3-0/oce/man/handleFlags-argo-method.Rd | 32 oce-1.3-0/oce/man/handleFlags-ctd-method.Rd | 23 oce-1.3-0/oce/man/handleFlags-oce-method.Rd | 17 oce-1.3-0/oce/man/handleFlags-section-method.Rd | 21 oce-1.3-0/oce/man/handleFlags.Rd | 17 oce-1.3-0/oce/man/imagep.Rd | 12 oce-1.3-0/oce/man/initialize-ctd-method.Rd | 1 oce-1.3-0/oce/man/initializeFlagScheme-ctd-method.Rd | 32 oce-1.3-0/oce/man/initializeFlagScheme-oce-method.Rd | 31 oce-1.3-0/oce/man/initializeFlagScheme-section-method.Rd | 31 oce-1.3-0/oce/man/initializeFlagScheme.Rd | 31 oce-1.3-0/oce/man/initializeFlagSchemeInternal.Rd | 31 oce-1.3-0/oce/man/julianCenturyAnomaly.Rd | 9 oce-1.3-0/oce/man/julianDay.Rd | 41 oce-1.3-0/oce/man/landsat-class.Rd | 13 oce-1.3-0/oce/man/landsat.Rd | 9 oce-1.3-0/oce/man/landsatAdd.Rd | 1 oce-1.3-0/oce/man/landsatTrim.Rd | 1 oce-1.3-0/oce/man/lisst-class.Rd | 4 oce-1.3-0/oce/man/lisst.Rd | 1 oce-1.3-0/oce/man/lobo.Rd | 3 oce-1.3-0/oce/man/longitudeTighten.Rd |only oce-1.3-0/oce/man/lonlat2map.Rd | 25 oce-1.3-0/oce/man/lonlat2utm.Rd | 4 oce-1.3-0/oce/man/lowpass.Rd | 2 oce-1.3-0/oce/man/magneticField.Rd | 64 oce-1.3-0/oce/man/map2lonlat.Rd | 32 oce-1.3-0/oce/man/mapAxis.Rd | 37 oce-1.3-0/oce/man/mapContour.Rd | 6 oce-1.3-0/oce/man/mapCoordinateSystem.Rd | 4 oce-1.3-0/oce/man/mapDirectionField.Rd | 6 oce-1.3-0/oce/man/mapGrid.Rd | 38 oce-1.3-0/oce/man/mapImage.Rd | 67 oce-1.3-0/oce/man/mapLines.Rd | 2 oce-1.3-0/oce/man/mapLongitudeLatitudeXY.Rd | 4 oce-1.3-0/oce/man/mapPlot.Rd | 589 +-- oce-1.3-0/oce/man/mapPoints.Rd | 2 oce-1.3-0/oce/man/mapPolygon.Rd | 49 oce-1.3-0/oce/man/mapScalebar.Rd | 9 oce-1.3-0/oce/man/mapText.Rd | 4 oce-1.3-0/oce/man/mapTissot.Rd | 5 oce-1.3-0/oce/man/met.Rd | 1 oce-1.3-0/oce/man/moonAngle.Rd | 12 oce-1.3-0/oce/man/numberAsPOSIXct.Rd | 13 oce-1.3-0/oce/man/oce-deprecated.Rd | 4 oce-1.3-0/oce/man/oce.plot.ts.Rd | 15 oce-1.3-0/oce/man/oceAxis.Rd |only oce-1.3-0/oce/man/oceCRS.Rd | 10 oce-1.3-0/oce/man/oceColors9B.Rd | 1 oce-1.3-0/oce/man/oceColorsCDOM.Rd | 48 oce-1.3-0/oce/man/oceColorsChlorophyll.Rd | 48 oce-1.3-0/oce/man/oceColorsClosure.Rd | 1 oce-1.3-0/oce/man/oceColorsDensity.Rd | 48 oce-1.3-0/oce/man/oceColorsFreesurface.Rd | 48 oce-1.3-0/oce/man/oceColorsGebco.Rd | 44 oce-1.3-0/oce/man/oceColorsJet.Rd | 4 oce-1.3-0/oce/man/oceColorsOxygen.Rd | 48 oce-1.3-0/oce/man/oceColorsPAR.Rd | 48 oce-1.3-0/oce/man/oceColorsPalette.Rd | 1 oce-1.3-0/oce/man/oceColorsPhase.Rd | 48 oce-1.3-0/oce/man/oceColorsSalinity.Rd | 48 oce-1.3-0/oce/man/oceColorsTemperature.Rd | 48 oce-1.3-0/oce/man/oceColorsTurbidity.Rd | 48 oce-1.3-0/oce/man/oceColorsTurbo.Rd |only oce-1.3-0/oce/man/oceColorsTwo.Rd | 1 oce-1.3-0/oce/man/oceColorsVelocity.Rd | 48 oce-1.3-0/oce/man/oceColorsViridis.Rd | 15 oce-1.3-0/oce/man/oceColorsVorticity.Rd | 48 oce-1.3-0/oce/man/oceFilter.Rd | 2 oce-1.3-0/oce/man/oceNames2whpNames.Rd | 4 oce-1.3-0/oce/man/oceProject.Rd | 57 oce-1.3-0/oce/man/oceSetData.Rd | 13 oce-1.3-0/oce/man/oceSetMetadata.Rd | 25 oce-1.3-0/oce/man/oceUnits2whpUnits.Rd | 4 oce-1.3-0/oce/man/ocecolors.Rd | 2 oce-1.3-0/oce/man/odf-class.Rd | 17 oce-1.3-0/oce/man/parseLatLon.Rd | 8 oce-1.3-0/oce/man/plot-adp-method.Rd | 3 oce-1.3-0/oce/man/plot-adv-method.Rd | 3 oce-1.3-0/oce/man/plot-amsr-method.Rd | 83 oce-1.3-0/oce/man/plot-argo-method.Rd | 10 oce-1.3-0/oce/man/plot-bremen-method.Rd | 3 oce-1.3-0/oce/man/plot-cm-method.Rd | 5 oce-1.3-0/oce/man/plot-coastline-method.Rd | 20 oce-1.3-0/oce/man/plot-ctd-method.Rd | 20 oce-1.3-0/oce/man/plot-echosounder-method.Rd | 2 oce-1.3-0/oce/man/plot-gps-method.Rd | 11 oce-1.3-0/oce/man/plot-ladp-method.Rd | 3 oce-1.3-0/oce/man/plot-landsat-method.Rd | 2 oce-1.3-0/oce/man/plot-lisst-method.Rd | 3 oce-1.3-0/oce/man/plot-lobo-method.Rd | 3 oce-1.3-0/oce/man/plot-met-method.Rd | 3 oce-1.3-0/oce/man/plot-odf-method.Rd | 3 oce-1.3-0/oce/man/plot-rsk-method.Rd | 3 oce-1.3-0/oce/man/plot-satellite-method.Rd | 11 oce-1.3-0/oce/man/plot-sealevel-method.Rd | 9 oce-1.3-0/oce/man/plot-section-method.Rd | 42 oce-1.3-0/oce/man/plot-tidem-method.Rd | 4 oce-1.3-0/oce/man/plot-topo-method.Rd | 3 oce-1.3-0/oce/man/plot-windrose-method.Rd | 3 oce-1.3-0/oce/man/plot-xbt-method.Rd | 3 oce-1.3-0/oce/man/plotProfile.Rd | 11 oce-1.3-0/oce/man/plotScan.Rd | 2 oce-1.3-0/oce/man/plotTS.Rd | 66 oce-1.3-0/oce/man/predict.tidem.Rd | 1 oce-1.3-0/oce/man/preferAdjusted.Rd |only oce-1.3-0/oce/man/read.adp.Rd | 7 oce-1.3-0/oce/man/read.adp.ad2cp.Rd | 12 oce-1.3-0/oce/man/read.adp.nortek.Rd | 13 oce-1.3-0/oce/man/read.adp.rdi.Rd | 24 oce-1.3-0/oce/man/read.adp.sontek.Rd | 7 oce-1.3-0/oce/man/read.adp.sontek.serial.Rd | 7 oce-1.3-0/oce/man/read.adv.Rd | 6 oce-1.3-0/oce/man/read.adv.nortek.Rd | 6 oce-1.3-0/oce/man/read.adv.sontek.adr.Rd | 6 oce-1.3-0/oce/man/read.adv.sontek.serial.Rd | 6 oce-1.3-0/oce/man/read.adv.sontek.text.Rd | 6 oce-1.3-0/oce/man/read.amsr.Rd | 6 oce-1.3-0/oce/man/read.aquadopp.Rd | 29 oce-1.3-0/oce/man/read.aquadoppHR.Rd | 13 oce-1.3-0/oce/man/read.aquadoppProfiler.Rd | 13 oce-1.3-0/oce/man/read.argo.Rd | 86 oce-1.3-0/oce/man/read.coastline.shapefile.Rd | 4 oce-1.3-0/oce/man/read.ctd.Rd | 27 oce-1.3-0/oce/man/read.ctd.itp.Rd | 3 oce-1.3-0/oce/man/read.ctd.odf.Rd | 13 oce-1.3-0/oce/man/read.ctd.odv.Rd |only oce-1.3-0/oce/man/read.ctd.sbe.Rd | 16 oce-1.3-0/oce/man/read.ctd.woce.Rd | 8 oce-1.3-0/oce/man/read.ctd.woce.other.Rd | 1 oce-1.3-0/oce/man/read.g1sst.Rd | 13 oce-1.3-0/oce/man/read.index.Rd | 5 oce-1.3-0/oce/man/read.landsat.Rd | 1 oce-1.3-0/oce/man/read.met.Rd | 2 oce-1.3-0/oce/man/read.odf.Rd | 28 oce-1.3-0/oce/man/read.section.Rd | 17 oce-1.3-0/oce/man/read.topo.Rd | 19 oce-1.3-0/oce/man/read.xbt.edf.Rd | 15 oce-1.3-0/oce/man/read.xbt.noaa1.Rd | 2 oce-1.3-0/oce/man/rescale.Rd | 2 oce-1.3-0/oce/man/resizableLabel.Rd | 29 oce-1.3-0/oce/man/rsk.Rd | 1 oce-1.3-0/oce/man/satellite-class.Rd | 10 oce-1.3-0/oce/man/sealevel.Rd | 1 oce-1.3-0/oce/man/sealevelTuktoyaktuk.Rd | 1 oce-1.3-0/oce/man/section-class.Rd | 9 oce-1.3-0/oce/man/section.Rd | 8 oce-1.3-0/oce/man/setFlags-ctd-method.Rd | 3 oce-1.3-0/oce/man/shiftLongitude.Rd | 2 oce-1.3-0/oce/man/siderealTime.Rd | 9 oce-1.3-0/oce/man/snakeToCamel.Rd |only oce-1.3-0/oce/man/sub-sub-amsr-method.Rd | 41 oce-1.3-0/oce/man/sub-sub-argo-method.Rd | 14 oce-1.3-0/oce/man/sub-sub-ctd-method.Rd | 3 oce-1.3-0/oce/man/sub-sub-g1sst-method.Rd | 4 oce-1.3-0/oce/man/sub-sub-landsat-method.Rd | 1 oce-1.3-0/oce/man/sub-sub-tidem-method.Rd | 1 oce-1.3-0/oce/man/sub-subset-amsr-method.Rd | 23 oce-1.3-0/oce/man/sub-subset-ctd-method.Rd | 3 oce-1.3-0/oce/man/sub-subset-g1sst-method.Rd | 4 oce-1.3-0/oce/man/sub-subset-tidem-method.Rd | 1 oce-1.3-0/oce/man/subset-amsr-method.Rd | 30 oce-1.3-0/oce/man/subset-argo-method.Rd | 25 oce-1.3-0/oce/man/subset-coastline-method.Rd | 1 oce-1.3-0/oce/man/subset-ctd-method.Rd | 9 oce-1.3-0/oce/man/subset-section-method.Rd | 1 oce-1.3-0/oce/man/summary-amsr-method.Rd | 8 oce-1.3-0/oce/man/summary-cm-method.Rd | 6 oce-1.3-0/oce/man/summary-coastline-method.Rd | 1 oce-1.3-0/oce/man/summary-ctd-method.Rd | 3 oce-1.3-0/oce/man/summary-landsat-method.Rd | 1 oce-1.3-0/oce/man/summary-lobo-method.Rd | 3 oce-1.3-0/oce/man/summary-satellite-method.Rd | 9 oce-1.3-0/oce/man/summary-section-method.Rd | 1 oce-1.3-0/oce/man/summary-tidem-method.Rd | 1 oce-1.3-0/oce/man/sunAngle.Rd | 1 oce-1.3-0/oce/man/sunDeclinationRightAscension.Rd | 6 oce-1.3-0/oce/man/swDynamicHeight.Rd | 2 oce-1.3-0/oce/man/swSCTp.Rd | 3 oce-1.3-0/oce/man/swSpice.Rd | 4 oce-1.3-0/oce/man/swTSrho.Rd | 4 oce-1.3-0/oce/man/test_met_csv1.csv.Rd | 2 oce-1.3-0/oce/man/test_met_csv2.csv.Rd | 2 oce-1.3-0/oce/man/test_met_xml2.xml.Rd | 2 oce-1.3-0/oce/man/tidalCurrent.Rd |only oce-1.3-0/oce/man/tidedata.Rd | 1 oce-1.3-0/oce/man/tidem-class.Rd | 2 oce-1.3-0/oce/man/tidem.Rd | 1 oce-1.3-0/oce/man/tidemAstron.Rd | 1 oce-1.3-0/oce/man/tidemVuf.Rd | 1 oce-1.3-0/oce/man/timeToArgoJuld.Rd |only oce-1.3-0/oce/man/toEnuAdp.Rd | 4 oce-1.3-0/oce/man/toEnuAdv.Rd | 4 oce-1.3-0/oce/man/topoWorld.Rd | 5 oce-1.3-0/oce/man/ungrid.Rd | 2 oce-1.3-0/oce/man/usrLonLat.Rd | 20 oce-1.3-0/oce/man/vectorShow.Rd | 4 oce-1.3-0/oce/man/webtide.Rd | 6 oce-1.3-0/oce/man/wind.Rd | 1 oce-1.3-0/oce/man/woceNames2oceNames.Rd | 4 oce-1.3-0/oce/man/woceUnit2oceUnit.Rd | 1 oce-1.3-0/oce/man/write.ctd.Rd | 6 oce-1.3-0/oce/man/xbt-class.Rd | 2 oce-1.3-0/oce/man/xbt.Rd | 1 oce-1.3-0/oce/man/xyzToEnuAdv.Rd | 2 oce-1.3-0/oce/po/R-de.po | 1803 +++++++++-- oce-1.3-0/oce/po/R-es.po | 2399 ++++++++++++--- oce-1.3-0/oce/po/R-fr.po | 1821 +++++++++-- oce-1.3-0/oce/po/R-oce.pot | 1612 ++++++++-- oce-1.3-0/oce/po/R-zh.po | 1803 +++++++++-- oce-1.3-0/oce/src/RcppExports.cpp | 7 oce-1.3-0/oce/src/igrf12.f |only oce-1.3-0/oce/src/igrf13.f |only oce-1.3-0/oce/src/ldc_ad2cp_in_file.cpp | 358 +- oce-1.3-0/oce/src/ldc_rdi_in_file.cpp | 12 oce-1.3-0/oce/src/magdec.f | 688 ---- oce-1.3-0/oce/src/registerDynamicSymbol.c | 4 oce-1.3-0/oce/src/sw.c | 9 oce-1.3-0/oce/tests/testthat/t_equilib.dat.gz |only oce-1.3-0/oce/tests/testthat/test_ad2cp_1.R |only oce-1.3-0/oce/tests/testthat/test_ad2cp_2.R |only oce-1.3-0/oce/tests/testthat/test_air.R |only oce-1.3-0/oce/tests/testthat/test_amsr.R | 44 oce-1.3-0/oce/tests/testthat/test_argo.R | 62 oce-1.3-0/oce/tests/testthat/test_astronomical.R | 16 oce-1.3-0/oce/tests/testthat/test_cm.R |only oce-1.3-0/oce/tests/testthat/test_colormap.R | 14 oce-1.3-0/oce/tests/testthat/test_ctd.R | 19 oce-1.3-0/oce/tests/testthat/test_flags.R | 45 oce-1.3-0/oce/tests/testthat/test_local_satellite.R | 6 oce-1.3-0/oce/tests/testthat/test_map.R | 118 oce-1.3-0/oce/tests/testthat/test_misc.R | 44 oce-1.3-0/oce/tests/testthat/test_odv.R |only oce-1.3-0/oce/tests/testthat/test_plotting.R | 13 oce-1.3-0/oce/tests/testthat/test_tide.R |only oce-1.3-0/oce/tests/testthat/tide3.dat.gz |only oce-1.3-0/oce/vignettes/adp.Rmd | 4 oce-1.3-0/oce/vignettes/ctd.Rmd | 4 oce-1.3-0/oce/vignettes/flags.Rmd | 10 oce-1.3-0/oce/vignettes/map_projections.Rmd | 108 oce-1.3-0/oce/vignettes/oce.Rmd | 574 ++- oce-1.3-0/oce/vignettes/subclassing.Rmd | 4 387 files changed, 17539 insertions(+), 9880 deletions(-)
Title: Generation of Artificial Binary Data
Description: Generation of correlated artificial binary data.
Author: Friedrich Leisch [aut, cre],
Andreas Weingessel [aut],
Kurt Hornik [aut]
Maintainer: Friedrich Leisch <Friedrich.Leisch@R-project.org>
Diff between bindata versions 0.9-19 dated 2012-11-14 and 0.9-20 dated 2021-01-29
DESCRIPTION | 20 +++++++++++++------- MD5 | 20 ++++++++++---------- NAMESPACE | 1 + R/sysdata.rda |binary README | 2 +- man/SimulVals.Rd | 2 +- man/bincorr2commonprob.Rd | 2 +- man/check.commonprob.Rd | 2 +- man/commonprob2sigma.Rd | 2 +- man/rmvbin.Rd | 2 +- man/simul.commonprob.Rd | 2 +- 11 files changed, 31 insertions(+), 24 deletions(-)
Title: Simple Data Frames
Description: Provides a 'tbl_df' class (the 'tibble') that
provides stricter checking and better formatting than the traditional
data frame.
Author: Kirill Müller [aut, cre],
Hadley Wickham [aut],
Romain Francois [ctb],
Jennifer Bryan [ctb],
RStudio [cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between tibble versions 3.0.5 dated 2021-01-15 and 3.0.6 dated 2021-01-29
tibble-3.0.5/tibble/tests/testthat/_snaps/glimpse.md |only tibble-3.0.5/tibble/tests/testthat/test-glimpse.R |only tibble-3.0.6/tibble/DESCRIPTION | 6 tibble-3.0.6/tibble/MD5 | 66 tibble-3.0.6/tibble/NAMESPACE | 3 tibble-3.0.6/tibble/NEWS.md | 7 tibble-3.0.6/tibble/R/aaa-pillar.R | 9 tibble-3.0.6/tibble/R/lst.R | 4 tibble-3.0.6/tibble/R/tbl_sum.R | 14 tibble-3.0.6/tibble/R/tibble-package.R | 2 tibble-3.0.6/tibble/R/zzz.R | 8 tibble-3.0.6/tibble/README.md | 2 tibble-3.0.6/tibble/inst/doc/extending.html | 196 - tibble-3.0.6/tibble/inst/doc/formats.R | 3 tibble-3.0.6/tibble/inst/doc/formats.Rmd | 3 tibble-3.0.6/tibble/inst/doc/formats.html | 2784 ------------------ tibble-3.0.6/tibble/inst/doc/invariants.html | 258 - tibble-3.0.6/tibble/inst/doc/tibble.html | 206 - tibble-3.0.6/tibble/inst/doc/types.html | 202 - tibble-3.0.6/tibble/man/as_tibble.Rd | 2 tibble-3.0.6/tibble/man/enframe.Rd | 2 tibble-3.0.6/tibble/man/formatting.Rd | 2 tibble-3.0.6/tibble/man/frame_matrix.Rd | 2 tibble-3.0.6/tibble/man/glimpse.Rd | 2 tibble-3.0.6/tibble/man/lst.Rd | 5 tibble-3.0.6/tibble/man/name-repair-superseded.Rd | 2 tibble-3.0.6/tibble/man/new_tibble.Rd | 2 tibble-3.0.6/tibble/man/tibble-package.Rd | 2 tibble-3.0.6/tibble/man/tribble.Rd | 2 tibble-3.0.6/tibble/man/view.Rd | 2 tibble-3.0.6/tibble/tests/testthat/_snaps/str.md | 2 tibble-3.0.6/tibble/tests/testthat/_snaps/tbl_sum.md | 12 tibble-3.0.6/tibble/tests/testthat/test-tbl_sum.R | 4 tibble-3.0.6/tibble/tests/testthat/test-zzz-glimpse.R | 4 tibble-3.0.6/tibble/vignettes/formats.Rmd | 3 35 files changed, 158 insertions(+), 3665 deletions(-)
Title: Interface to Praat
Description: Read, write and manipulate 'Praat' TextGrid, PitchTier, Pitch, IntensityTier, Formant, Sound, and Collection files <https://www.fon.hum.uva.nl/praat/>.
Author: Tomas Boril [aut, cre]
Maintainer: Tomas Boril <borilt@gmail.com>
Diff between rPraat versions 1.3.1 dated 2020-04-04 and 1.3.2 dated 2021-01-29
DESCRIPTION | 10 - MD5 | 51 +++++--- NAMESPACE | 15 ++ NEWS.md | 8 + R/formant.R | 173 ++++++++++++++++++++++++++-- R/it.R | 116 ++++++++++++++++++ R/pitch.R | 178 +++++++++++++++++++++++++++-- R/pt.R | 116 ++++++++++++++++++ R/rpraat.R | 2 R/snd.R | 123 +++++++++++++++++++- README.md | 27 ++-- man/formant.getPointIndexHigherThanTime.Rd |only man/formant.getPointIndexLowerThanTime.Rd |only man/formant.getPointIndexNearestTime.Rd |only man/formant.read.Rd | 4 man/it.getPointIndexHigherThanTime.Rd |only man/it.getPointIndexLowerThanTime.Rd |only man/it.getPointIndexNearestTime.Rd |only man/it.interpolate.Rd | 2 man/pitch.getPointIndexHigherThanTime.Rd |only man/pitch.getPointIndexLowerThanTime.Rd |only man/pitch.getPointIndexNearestTime.Rd |only man/pitch.read.Rd | 6 man/pt.getPointIndexHigherThanTime.Rd |only man/pt.getPointIndexLowerThanTime.Rd |only man/pt.getPointIndexNearestTime.Rd |only man/pt.interpolate.Rd | 2 man/snd.getPointIndexHigherThanTime.Rd |only man/snd.getPointIndexLowerThanTime.Rd |only man/snd.getPointIndexNearestTime.Rd |only man/snd.read.Rd | 3 man/snd.write.Rd | 2 man/strTrim.Rd | 2 tests/testthat/test_rpraat.R | 120 +++++++++++++++++++ 34 files changed, 889 insertions(+), 71 deletions(-)
Title: Principal Covariates Regression
Description: Analyzing regression data with many and/or highly collinear predictor variables, by simultaneously reducing the predictor variables to a limited number of components and regressing the criterion variables on these components (de Jong S. & Kiers H. A. L. (1992) <doi:10.1016/0169-7439(92)80100-I>). Several rotation and model selection options are provided.
Author: Marlies Vervloet [aut, cre],
Henk Kiers [aut],
Eva Ceulemans [ctb]
Maintainer: Marlies Vervloet <marlies.vervloet@ppw.kuleuven.be>
Diff between PCovR versions 2.7 dated 2017-06-19 and 2.7.1 dated 2021-01-29
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- R/SortLoadings.R | 32 ++++++++++++++++++-------------- inst/CITATION | 4 ++-- 4 files changed, 28 insertions(+), 24 deletions(-)
Title: A C++11 Interface for R's C Interface
Description: Provides a header only, C++11 interface to R's C
interface. Compared to other approaches 'cpp11' strives to be safe
against long jumps from the C API as well as C++ exceptions, conform
to normal R function semantics and supports interaction with 'ALTREP'
vectors.
Author: Jim Hester [aut, cre] (<https://orcid.org/0000-0002-2739-7082>),
Romain François [ctb],
Benjamin Kietzman [ctb],
RStudio [cph, fnd]
Maintainer: Jim Hester <jim.hester@rstudio.com>
Diff between cpp11 versions 0.2.5 dated 2021-01-12 and 0.2.6 dated 2021-01-29
DESCRIPTION | 6 +++--- MD5 | 28 ++++++++++++++-------------- NEWS.md | 4 ++++ R/register.R | 12 ++++++++---- R/source.R | 7 +++++-- inst/doc/converting.R | 4 ++-- inst/doc/converting.Rmd | 4 ++-- inst/doc/cpp11.Rmd | 14 ++++++++++++-- inst/doc/cpp11.html | 32 +++++++++++++++++++------------- inst/doc/motivations.R | 6 +++--- inst/doc/motivations.Rmd | 6 +++--- tests/testthat/test-register.R | 17 +++++++++-------- vignettes/converting.Rmd | 4 ++-- vignettes/cpp11.Rmd | 14 ++++++++++++-- vignettes/motivations.Rmd | 6 +++--- 15 files changed, 101 insertions(+), 63 deletions(-)
Title: Predict and Visualize Population-Level Changes in Allele
Frequencies in Response to Climate Change
Description: Methods (Kindt, R. 2021. <doi:10.1101/2021.01.15.426775>) are provided of calibrating and predicting shifts in allele frequencies through redundancy analysis ('vegan::rda()') and generalized additive models ('mgcv::gam()'). Visualization functions for predicted changes in allele frequencies include 'shift.dot.ggplot()', 'shift.pie.ggplot()', 'shift.moon.ggplot()', 'shift.waffle.ggplot()' and 'shift.surf.ggplot()' that are made with input data sets that are prepared by helper functions for each visualization method. Examples in the documentation show how to prepare animated climate change graphics through a time series with the 'gganimate' package. Function 'amova.rda()' shows how Analysis of Molecular Variance can be directly conducted with the results from redundancy analysis.
Author: Roeland Kindt [cre, aut] (<https://orcid.org/0000-0002-7672-0712>)
Maintainer: Roeland Kindt <R.KINDT@CGIAR.ORG>
Diff between AlleleShift versions 0.9 dated 2021-01-26 and 0.9-2 dated 2021-01-29
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- build/partial.rdb |binary inst/ChangeLog | 6 ++++++ man/amova.rda.Rd | 2 +- 5 files changed, 15 insertions(+), 9 deletions(-)
Title: Stability Selection with Error Control
Description: Resampling procedures to assess the stability of selected variables
with additional finite sample error control for high-dimensional variable
selection procedures such as Lasso or boosting. Both, standard stability
selection (Meinshausen & Buhlmann, 2010, <doi:10.1111/j.1467-9868.2010.00740.x>)
and complementary pairs stability selection with improved error bounds
(Shah & Samworth, 2013, <doi:10.1111/j.1467-9868.2011.01034.x>) are
implemented. The package can be combined with arbitrary user specified
variable selection approaches.
Author: Benjamin Hofner [aut, cre],
Torsten Hothorn [aut]
Maintainer: Benjamin Hofner <benjamin.hofner@pei.de>
Diff between stabs versions 0.6-3 dated 2017-07-19 and 0.6-4 dated 2021-01-29
stabs-0.6-3/stabs/R/stabselgraphical.R |only stabs-0.6-3/stabs/inst/doc/stabs_graphs.R |only stabs-0.6-3/stabs/inst/doc/stabs_graphs.Rmd |only stabs-0.6-3/stabs/inst/doc/stabs_graphs.html |only stabs-0.6-3/stabs/man/quic.graphical_model.Rd |only stabs-0.6-3/stabs/vignettes/stabs_graphs.Rmd |only stabs-0.6-4/stabs/ChangeLog | 22 ++++++++- stabs-0.6-4/stabs/DESCRIPTION | 12 ++--- stabs-0.6-4/stabs/MD5 | 30 +++++------- stabs-0.6-4/stabs/NAMESPACE | 2 stabs-0.6-4/stabs/R/stabsel.R | 5 -- stabs-0.6-4/stabs/README.md | 4 - stabs-0.6-4/stabs/build/partial.rdb |binary stabs-0.6-4/stabs/build/vignette.rds |binary stabs-0.6-4/stabs/inst/NEWS.Rd | 17 ++++++- stabs-0.6-4/stabs/inst/doc/Using_stabs.R | 24 +++++----- stabs-0.6-4/stabs/inst/doc/Using_stabs.html | 61 +++++++++++--------------- stabs-0.6-4/stabs/man/fitfuns.Rd | 2 stabs-0.6-4/stabs/man/stabsel.Rd | 4 - 19 files changed, 102 insertions(+), 81 deletions(-)
Title: Keep Track of Dates in Terms of Months
Description: Keep track of dates in terms of fractional calendar months
per Damien Laker "Time Calculations for Annualizing Returns: the Need for Standardization",
The Journal of Performance Measurement, 2008.
Model dates as of close of business.
Perform date arithmetic in units of "months" and "years".
Allow "infinite" dates to model "ultimate" time.
Author: Dan Murphy
Maintainer: Dan Murphy <chiefmurphy@gmail.com>
Diff between mondate versions 0.10.01.02 dated 2013-07-20 and 0.10.02 dated 2021-01-29
DESCRIPTION | 26 ++++++++++++++------------ LICENSE |only MD5 | 8 +++++--- NAMESPACE | 2 ++ NEWS | 7 ++++++- inst |only 6 files changed, 27 insertions(+), 16 deletions(-)
Title: Australian Tax Policy Analysis
Description: Utilities to cost and evaluate Australian tax policy, including fast
projections of personal income tax collections, high-performance tax and
transfer calculators, and an interface to common indices from the Australian
Bureau of Statistics. Written to support Grattan Institute's Australian
Perspectives program, and related projects. Access to the Australian Taxation
Office's sample files of personal income tax returns is assumed.
Author: Hugh Parsonage [aut, cre],
Tim Cameron [aut],
Brendan Coates [aut],
Matthew Katzen [aut],
William Young [aut],
Ittima Cherastidtham [dtc],
W. Karsten [ctb],
M. Enrique Garcia [ctb],
Matt Cowgill [aut]
Maintainer: Hugh Parsonage <hugh.parsonage@gmail.com>
Diff between grattan versions 1.9.0.2 dated 2021-01-16 and 1.9.0.4 dated 2021-01-29
grattan-1.9.0.2/grattan/vignettes/temp.html |only grattan-1.9.0.4/grattan/DESCRIPTION | 18 grattan-1.9.0.4/grattan/MD5 | 33 grattan-1.9.0.4/grattan/NEWS.md | 6 grattan-1.9.0.4/grattan/build/vignette.rds |binary grattan-1.9.0.4/grattan/inst/doc/datatable-implementation.html | 4 grattan-1.9.0.4/grattan/inst/doc/grattan.R | 2265 +++++----- grattan-1.9.0.4/grattan/inst/doc/grattan.Rmd | 196 grattan-1.9.0.4/grattan/inst/doc/grattan.html | 1283 +++++ grattan-1.9.0.4/grattan/inst/doc/model-income-tax.R | 349 - grattan-1.9.0.4/grattan/inst/doc/model-income-tax.Rmd | 903 +-- grattan-1.9.0.4/grattan/inst/doc/model-income-tax.html | 478 +- grattan-1.9.0.4/grattan/inst/doc/v201515-taxstats.R | 76 grattan-1.9.0.4/grattan/inst/doc/v201515-taxstats.Rmd | 198 grattan-1.9.0.4/grattan/inst/doc/v201515-taxstats.html | 70 grattan-1.9.0.4/grattan/vignettes/grattan.Rmd | 196 grattan-1.9.0.4/grattan/vignettes/model-income-tax.Rmd | 903 +-- grattan-1.9.0.4/grattan/vignettes/v201515-taxstats.Rmd | 198 18 files changed, 4274 insertions(+), 2902 deletions(-)
Title: Suite of GR Hydrological Models for Precipitation-Runoff
Modelling
Description: Hydrological modelling tools developed at INRAE-Antony (HYCAR Research Unit, France). The package includes several conceptual rainfall-runoff models (GR4H, GR5H, GR4J, GR5J, GR6J, GR2M, GR1A), a snow accumulation and melt model (CemaNeige) and the associated functions for their calibration and evaluation. Use help(airGR) for package description and references.
Author: Laurent Coron [aut, trl] (<https://orcid.org/0000-0002-1503-6204>),
Olivier Delaigue [aut, cre] (<https://orcid.org/0000-0002-7668-8468>),
Guillaume Thirel [aut] (<https://orcid.org/0000-0002-1444-1830>),
David Dorchies [aut] (<https://orcid.org/0000-0002-6595-7984>),
Charles Perrin [aut, ths] (<https://orcid.org/0000-0001-8552-1881>),
Claude Michel [aut, ths],
Vazken Andréassian [ctb, ths] (<https://orcid.org/0000-0001-7124-9303>),
François Bourgin [ctb] (<https://orcid.org/0000-0002-2820-7260>),
Pierre Brigode [ctb] (<https://orcid.org/0000-0001-8257-0741>),
Nicolas Le Moine [ctb],
Thibaut Mathevet [ctb] (<https://orcid.org/0000-0002-4142-4454>),
Safouane Mouelhi [ctb],
Ludovic Oudin [ctb] (<https://orcid.org/0000-0002-3712-0933>),
Raji Pushpalatha [ctb],
Audrey Valéry [ctb]
Maintainer: Olivier Delaigue <airGR@inrae.fr>
Diff between airGR versions 1.6.9.27 dated 2021-01-22 and 1.6.10.4 dated 2021-01-29
airGR-1.6.10.4/airGR/DESCRIPTION | 12 airGR-1.6.10.4/airGR/MD5 | 130 - airGR-1.6.10.4/airGR/NEWS.md | 24 airGR-1.6.10.4/airGR/R/Calibration_Michel.R | 4 airGR-1.6.10.4/airGR/R/CreateCalibOptions.R | 50 airGR-1.6.10.4/airGR/R/CreateInputsModel.R | 522 +++--- airGR-1.6.10.4/airGR/R/DataAltiExtrapolation_Valery.R | 672 +------- airGR-1.6.10.4/airGR/R/Imax.R | 55 airGR-1.6.10.4/airGR/R/PE_Oudin.R | 4 airGR-1.6.10.4/airGR/R/PEdaily_Oudin.R | 12 airGR-1.6.10.4/airGR/R/RunModel.R | 2 airGR-1.6.10.4/airGR/R/RunModel_GR2M.R | 4 airGR-1.6.10.4/airGR/R/RunModel_GR4H.R | 4 airGR-1.6.10.4/airGR/R/RunModel_GR4J.R | 4 airGR-1.6.10.4/airGR/R/RunModel_GR5H.R | 65 airGR-1.6.10.4/airGR/R/RunModel_GR5J.R | 4 airGR-1.6.10.4/airGR/R/RunModel_GR6J.R | 4 airGR-1.6.10.4/airGR/R/RunModel_Lag.R | 9 airGR-1.6.10.4/airGR/R/TransfoParam_CemaNeige.R | 2 airGR-1.6.10.4/airGR/R/TransfoParam_CemaNeigeHyst.R | 6 airGR-1.6.10.4/airGR/R/TransfoParam_GR1A.R | 2 airGR-1.6.10.4/airGR/R/TransfoParam_Lag.R | 4 airGR-1.6.10.4/airGR/R/UtilsCemaNeige.R |only airGR-1.6.10.4/airGR/R/UtilsErrorCrit.R | 2 airGR-1.6.10.4/airGR/build/partial.rdb |binary airGR-1.6.10.4/airGR/inst/doc/V01_get_started.Rmd | 1 airGR-1.6.10.4/airGR/inst/doc/V01_get_started.html | 802 ++++----- airGR-1.6.10.4/airGR/inst/doc/V02.1_param_optim.R | 79 airGR-1.6.10.4/airGR/inst/doc/V02.1_param_optim.Rmd | 104 + airGR-1.6.10.4/airGR/inst/doc/V02.1_param_optim.html | 720 ++++---- airGR-1.6.10.4/airGR/inst/doc/V02.2_param_mcmc.html | 649 +++----- airGR-1.6.10.4/airGR/inst/doc/V03_param_sets_GR4J.Rmd | 1 airGR-1.6.10.4/airGR/inst/doc/V03_param_sets_GR4J.html | 657 +++----- airGR-1.6.10.4/airGR/inst/doc/V04_cemaneige_hysteresis.Rmd | 1 airGR-1.6.10.4/airGR/inst/doc/V04_cemaneige_hysteresis.html | 805 ++++------ airGR-1.6.10.4/airGR/inst/doc/V05_sd_model.R | 64 airGR-1.6.10.4/airGR/inst/doc/V05_sd_model.Rmd | 66 airGR-1.6.10.4/airGR/inst/doc/V05_sd_model.html | 796 ++++----- airGR-1.6.10.4/airGR/inst/vignettesData/vignetteParamOptimCaramel.rda |only airGR-1.6.10.4/airGR/man/CreateCalibOptions.Rd | 2 airGR-1.6.10.4/airGR/man/CreateInputsCrit.Rd | 8 airGR-1.6.10.4/airGR/man/CreateRunOptions.Rd | 6 airGR-1.6.10.4/airGR/man/Param_Sets_GR4J.Rd | 4 airGR-1.6.10.4/airGR/man/RunModel_CemaNeige.Rd | 4 airGR-1.6.10.4/airGR/man/RunModel_CemaNeigeGR4H.Rd | 2 airGR-1.6.10.4/airGR/man/RunModel_CemaNeigeGR4J.Rd | 4 airGR-1.6.10.4/airGR/man/RunModel_CemaNeigeGR5H.Rd | 2 airGR-1.6.10.4/airGR/man/RunModel_CemaNeigeGR6J.Rd | 4 airGR-1.6.10.4/airGR/man/RunModel_GR1A.Rd | 2 airGR-1.6.10.4/airGR/man/TransfoParam.Rd | 4 airGR-1.6.10.4/airGR/src/airGR.c | 4 airGR-1.6.10.4/airGR/src/frun_GR5H.f90 | 7 airGR-1.6.10.4/airGR/tests/testthat/helper_regression.R | 14 airGR-1.6.10.4/airGR/tests/testthat/helper_vignettes.R | 20 airGR-1.6.10.4/airGR/tests/testthat/regression.R | 2 airGR-1.6.10.4/airGR/tests/testthat/regression_tests.R | 6 airGR-1.6.10.4/airGR/tests/testthat/test-CreateRunOptions.R | 19 airGR-1.6.10.4/airGR/tests/testthat/test-CreateiniStates.R | 112 - airGR-1.6.10.4/airGR/tests/testthat/test-RunModel_Lag.R |only airGR-1.6.10.4/airGR/tests/testthat/test-SeriesAggreg.R | 9 airGR-1.6.10.4/airGR/tests/testthat/test-evap.R | 15 airGR-1.6.10.4/airGR/tests/testthat/test-vignettes.R | 20 airGR-1.6.10.4/airGR/vignettes/V01_get_started.Rmd | 1 airGR-1.6.10.4/airGR/vignettes/V02.1_param_optim.Rmd | 104 + airGR-1.6.10.4/airGR/vignettes/V03_param_sets_GR4J.Rmd | 1 airGR-1.6.10.4/airGR/vignettes/V04_cemaneige_hysteresis.Rmd | 1 airGR-1.6.10.4/airGR/vignettes/V05_sd_model.Rmd | 66 airGR-1.6.9.27/airGR/tests/testthat/test-RunModel_LAG.R |only 68 files changed, 3224 insertions(+), 3561 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-12-08 1.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-12 0.1.4
2020-06-20 0.1.3
2019-11-20 0.1.2
2018-02-23 0.1.1
2018-02-20 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-08-24 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-07-13 1.1
2020-06-25 1.0
Title: Fast Kalman Filtering Through Sequential Processing
Description: Fast and flexible Kalman filtering implementation utilizing sequential processing, designed for efficient parameter estimation through maximum likelihood estimation. Sequential processing is a univariate treatment of a multivariate series of observations and can benefit from computational efficiency over traditional Kalman filtering when independence is assumed in the variance of the disturbances of the measurement equation. Sequential processing is described in the textbook of Durbin and Koopman (2001, ISBN:978-0-19-964117-8). 'FKF.SP' was built upon the existing 'FKF' package and is, in general, a faster Kalman filter.
Author: Thomas Aspinall [aut, cre] (<https://orcid.org/0000-0002-6968-1989>),
Adrian Gepp [aut] (<https://orcid.org/0000-0003-1666-5501>),
Geoff Harris [aut] (<https://orcid.org/0000-0003-4284-8619>),
Simone Kelly [aut] (<https://orcid.org/0000-0002-6528-8557>),
Colette Southam [aut] (<https://orcid.org/0000-0001-7263-2347>),
Bruce Vanstone [aut] (<https://orcid.org/0000-0002-3977-2468>),
David Luethi [ctb],
Philipp Erb [ctb],
Simon Otziger [ctb],
Paul Smith [ctb] (<https://orcid.org/0000-0002-0034-3412>)
Maintainer: Thomas Aspinall <tomaspinall2512@gmail.com>
Diff between FKF.SP versions 0.1.0 dated 2020-12-18 and 0.1.1 dated 2021-01-29
FKF.SP-0.1.0/FKF.SP/R/FKF.SP-Description.R |only FKF.SP-0.1.1/FKF.SP/DESCRIPTION | 10 FKF.SP-0.1.1/FKF.SP/MD5 | 21 FKF.SP-0.1.1/FKF.SP/NEWS.md | 9 FKF.SP-0.1.1/FKF.SP/R/fkf.SP.R | 149 ++---- FKF.SP-0.1.1/FKF.SP/README.md | 2 FKF.SP-0.1.1/FKF.SP/build/FKF.SP.pdf |binary FKF.SP-0.1.1/FKF.SP/inst/doc/FKFSP.R | 150 ++++-- FKF.SP-0.1.1/FKF.SP/inst/doc/FKFSP.Rmd | 703 ++++++++++++++++------------- FKF.SP-0.1.1/FKF.SP/inst/doc/FKFSP.html | 565 ++++++++++++----------- FKF.SP-0.1.1/FKF.SP/man/fkf.SP.Rd | 134 ++--- FKF.SP-0.1.1/FKF.SP/vignettes/FKFSP.Rmd | 703 ++++++++++++++++------------- 12 files changed, 1357 insertions(+), 1089 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-15 0.1
2021-01-15 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-06-17 0.1.3
2019-03-13 0.1.2
2019-02-22 0.1.1