Title: Analysis of Single-Cell Chromatin Data
Description: A framework for the analysis and exploration of single-cell chromatin data.
The 'Signac' package contains functions for quantifying single-cell chromatin data,
computing per-cell quality control metrics, dimension reduction
and normalization, visualization, and DNA sequence motif analysis.
Reference: Stuart et al. (2020) <doi:10.1101/2020.11.09.373613>.
Author: Tim Stuart [aut, cre] (<https://orcid.org/0000-0002-3044-0897>),
Avi Srivastava [aut] (<https://orcid.org/0000-0001-9798-2079>),
Paul Hoffman [ctb] (<https://orcid.org/0000-0002-7693-8957>),
Rahul Satija [ctb] (<https://orcid.org/0000-0001-9448-8833>)
Maintainer: Tim Stuart <tstuart@nygenome.org>
Diff between Signac versions 1.1.0 dated 2020-11-06 and 1.1.1 dated 2021-02-03
DESCRIPTION | 21 +++--- MD5 | 120 +++++++++++++++++++------------------ NAMESPACE | 2 NEWS.md | 29 +++++++++ R/data.R | 16 ++--- R/dimension_reduction.R | 2 R/footprinting.R | 2 R/fragments.R | 95 ++++++++++++++++++----------- R/generics.R | 29 +++++---- R/iranges-methods.R | 2 R/links.R | 4 - R/mito.R | 6 - R/motifs.R | 4 - R/objects.R | 37 ++++++++--- R/peaks.R | 3 R/preprocessing.R | 32 +++++++--- R/utilities.R | 24 ++++++- R/visualization.R | 112 ++++++++++++++++++++++++++++------- build |only inst/CITATION |only man/AlleleFreq.Rd | 2 man/AnnotationPlot.Rd | 2 man/BinarizeCounts.Rd | 2 man/CallPeaks.Rd | 2 man/ChromatinAssay-class.Rd | 2 man/ConvertMotifID.Rd | 2 man/CoveragePlot.Rd | 9 ++ man/DepthCor.Rd | 4 - man/DownsampleFeatures.Rd | 4 - man/ExpressionPlot.Rd | 2 man/FRiP.Rd | 2 man/FindClonotypes.Rd | 6 - man/FindMotifs.Rd | 2 man/FindTopFeatures.Rd | 17 +++-- man/Footprint.Rd | 2 man/GetIntersectingFeatures.Rd | 6 - man/GetMotifData.Rd | 2 man/Jaccard.Rd | 2 man/LinkPeaks.Rd | 4 - man/LinkPlot.Rd | 2 man/NucleosomeSignal.Rd | 2 man/PeakPlot.Rd | 29 ++++++++- man/PlotFootprint.Rd | 2 man/RunChromVAR.Rd | 2 man/RunSVD.Rd | 2 man/RunTFIDF.Rd | 6 - man/SetMotifData.Rd | 2 man/TSSEnrichment.Rd | 2 man/as.ChromatinAssay.Rd | 2 man/blacklist_ce10.Rd | 2 man/blacklist_ce11.Rd | 2 man/blacklist_dm3.Rd | 2 man/blacklist_dm6.Rd | 2 man/blacklist_hg19.Rd | 2 man/blacklist_hg38.Rd | 2 man/blacklist_hg38_unified.Rd | 2 man/blacklist_mm10.Rd | 2 man/findOverlaps-methods.Rd | 2 man/reexports.Rd | 2 man/theme_browser.Rd | 2 src/split.cpp | 23 ++++--- tests/testthat/test_fragments.R | 127 ++++++++++++++++++++++++++++++++++++++++ 62 files changed, 596 insertions(+), 241 deletions(-)
Title: Interactive Analytic Networks
Description: Create interactive analytic networks. It joins the data analysis power of R to obtain coincidences, co-occurrences and correlations, and the visualization libraries of 'JavaScript' in one package.
Author: Modesto Escobar [cre, aut, cph]
(<https://orcid.org/0000-0003-2072-6071>),
David Barrios [aut],
Carlos Prieto [aut],
Luis Martinez-Uribe [aut] (<https://orcid.org/0000-0002-7795-3972>),
Pablo Cabrera-Álvarez [aut]
Maintainer: Modesto Escobar <modesto@usal.es>
Diff between netCoin versions 1.1.26 dated 2020-12-16 and 1.2.21 dated 2021-02-03
DESCRIPTION | 32 MD5 | 65 NAMESPACE | 13 R/gridgallery.R |only R/multigraph.R | 6 R/netcoin.R | 436 ++- R/network.R | 46 R/utils.R | 12 build/partial.rdb |binary build/vignette.rds |binary inst/doc/netCoin.R | 140 inst/doc/netCoin.html | 1023 +++---- inst/doc/surCoin.R | 179 - inst/doc/surCoin.Rmd | 4 inst/doc/surCoin.html | 840 +++-- inst/www/Roboto-Regular-latin-ext.woff2 |only inst/www/Roboto-Regular-latin.woff2 |only inst/www/barplot.js | 104 inst/www/ca.js | 70 inst/www/colorScales.js | 122 inst/www/d3.min.js | 4 inst/www/en.js | 66 inst/www/es.js | 68 inst/www/functions.js | 921 +++++- inst/www/gallery.js |only inst/www/help_es.html |only inst/www/iro.min.js |only inst/www/multigraph.js | 40 inst/www/network.js | 4638 +++++++++++++++++++++----------- inst/www/styles.css | 1347 ++++++++- inst/www/timeline.js | 923 +++++- man/gridGallery.Rd |only man/layoutGrid.Rd | 10 man/netCoin.Rd | 34 man/saveGhml.Rd |only man/surCoin.Rd | 36 man/surScat.Rd |only vignettes/surCoin.Rmd | 4 38 files changed, 7793 insertions(+), 3390 deletions(-)
Title: Bayesian Variable Selection Methods for Multivariate Data
Description: Bayesian variable selection methods for data with multivariate responses and multiple covariates. The package contains implementations of multivariate Bayesian variable selection methods for continuous data and zero-inflated count data.
Author: Kyu Ha Lee, Mahlet G. Tadesse, Brent A. Coull, Jacqueline R. Starr
Maintainer: Kyu Ha Lee <klee15239@gmail.com>
Diff between mBvs versions 1.3 dated 2018-08-28 and 1.4 dated 2021-02-03
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++------ data/simData_mzip.rda |binary man/mBvs-package.Rd | 14 ++++++++------ man/mvnBvs.Rd | 4 ++-- man/mzipBvs.Rd | 8 ++++---- src/mzipBVS_general_Updates.c | 4 ++-- 7 files changed, 28 insertions(+), 26 deletions(-)
Title: Loads Shapefiles of Official Spatial Data Sets of Brazil
Description: Easy access to official spatial data sets of Brazil as 'sf' objects
in R. The package includes a wide range of geospatial data available
at various geographic scales and for various years with harmonized
attributes, projection and topology.
Author: Rafael H. M. Pereira [aut, cre]
(<https://orcid.org/0000-0003-2125-7465>),
Caio Nogueira Goncalves [aut],
Paulo Henrique Fernandes de Araujo [ctb],
Guilherme Duarte Carvalho [ctb],
Rodrigo Almeida de Arruda [ctb],
Igor Nascimento [ctb],
Barbara Santiago Pedreira da Costa [ctb],
Welligtton Silva Cavedo [ctb],
Pedro R. Andrade [ctb],
Alan da Silva [ctb],
Carlos Kauê Vieira Braga [ctb],
Carl Schmertmann [ctb],
Ipea - Institue for Applied Economic Research [cph, fnd]
Maintainer: Rafael H. M. Pereira <rafa.pereira.br@gmail.com>
Diff between geobr versions 1.4 dated 2020-10-04 and 1.5 dated 2021-02-03
geobr-1.4/geobr/vignettes/pandoc40f46f13537e.html |only geobr-1.5/geobr/DESCRIPTION | 12 geobr-1.5/geobr/MD5 | 21 - geobr-1.5/geobr/NAMESPACE | 2 geobr-1.5/geobr/R/cep_to_state.R |only geobr-1.5/geobr/R/download_metadata.R | 12 geobr-1.5/geobr/R/geobr.R | 3 geobr-1.5/geobr/R/read_schools.R |only geobr-1.5/geobr/R/utils.R | 2 geobr-1.5/geobr/inst/doc/intro_to_geobr.html | 404 +++++---------------- geobr-1.5/geobr/man/cep_to_state.Rd |only geobr-1.5/geobr/man/read_schools.Rd |only geobr-1.5/geobr/tests/testthat/test-cep_to_state.R |only geobr-1.5/geobr/tests/testthat/test-lookup_muni.R | 1 geobr-1.5/geobr/tests/testthat/test-read_schools.R |only 15 files changed, 144 insertions(+), 313 deletions(-)
Title: Calculate Scores and Marks for Track and Field Combined Events
Description: Includes functions to calculate scores and marks for track and
field combined events competitions. The functions are based on the scoring
tables for combined events set forth by the International Association of
Athletics Federation (2001).
Author: Katie Frank [aut, cre] (<https://orcid.org/0000-0002-0353-0328>)
Maintainer: Katie Frank <katiexfrank@gmail.com>
Diff between combinedevents versions 0.1.0 dated 2020-09-23 and 0.1.1 dated 2021-02-03
combinedevents-0.1.0/combinedevents/R/combinedevents.R |only combinedevents-0.1.0/combinedevents/man/combinedevents.Rd |only combinedevents-0.1.1/combinedevents/DESCRIPTION | 9 +- combinedevents-0.1.1/combinedevents/MD5 | 20 ++--- combinedevents-0.1.1/combinedevents/NEWS.md | 6 + combinedevents-0.1.1/combinedevents/R/combinedevents-package.R |only combinedevents-0.1.1/combinedevents/R/data.R | 4 - combinedevents-0.1.1/combinedevents/R/marks.R | 23 ++--- combinedevents-0.1.1/combinedevents/README.md | 39 ++++------ combinedevents-0.1.1/combinedevents/inst/WORDLIST | 1 combinedevents-0.1.1/combinedevents/man/combinedevents-package.Rd |only combinedevents-0.1.1/combinedevents/man/dec.Rd | 4 - combinedevents-0.1.1/combinedevents/man/marks.Rd | 23 ++--- 13 files changed, 63 insertions(+), 66 deletions(-)
More information about combinedevents at CRAN
Permanent link
Title: Random Forest with Canonical Correlation Analysis
Description: Random Forest with Canonical Correlation Analysis (RFCCA) is a
random forest method for estimating the canonical correlations between two
sets of variables depending on the subject-related covariates. The trees are
built with a splitting rule specifically designed to partition the data to
maximize the canonical correlation heterogeneity between child nodes. The
method is described in Alakus et al. (2020) <arXiv:2011.11555>. RFCCA uses
'randomForestSRC' package (Ishwaran and Kogalur, 2020) by freezing at the
version 2.9.3. The custom splitting rule feature is utilised to apply the
proposed splitting rule.
Author: Cansu Alakus [aut, cre],
Denis Larocque [aut],
Aurelie Labbe [aut],
Hemant Ishwaran [ctb] (Author of included randomForestSRC codes),
Udaya B. Kogalur [ctb] (Author of included randomForestSRC codes)
Maintainer: Cansu Alakus <cansu.alakus@hec.ca>
Diff between RFCCA versions 1.0.3 dated 2021-01-04 and 1.0.4 dated 2021-02-03
DESCRIPTION | 6 ++-- MD5 | 28 ++++++++++---------- NEWS.md | 4 ++ R/generic.predict.rfcca.R | 1 R/generic.vimp.rfcca.R | 7 ++--- R/global.significance.R | 42 ++++++++++++++---------------- R/plot.vimp.rfcca.R | 4 ++ R/predict.rfcca.R | 7 ++--- R/rfcca.R | 61 ++++++++++++++++++++++++++------------------- configure | 18 ++++++------- configure.ac | 2 - inst/doc/RFCCA.html | 8 ++--- man/global.significance.Rd | 9 ++---- man/predict.rfcca.Rd | 7 ++--- man/rfcca.Rd | 21 +++++++++++---- 15 files changed, 123 insertions(+), 102 deletions(-)
Title: Multiple Pairwise Comparison Tests
Description: Multiple pairwise comparison tests on tidy data for
one-way analysis of variance for both between-subjects and
within-subjects designs. Currently, it supports only the most common
types of statistical analyses and tests: parametric (Welch's and
Student's t-test), nonparametric (Durbin-Conover and Dunn test),
robust (Yuen’s trimmed means test), and Bayes Factor (Student's
t-test).
Author: Indrajeet Patil [cre, aut, cph]
(<https://orcid.org/0000-0003-1995-6531>, @patilindrajeets)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between pairwiseComparisons versions 3.1.2 dated 2021-01-15 and 3.1.3 dated 2021-02-03
DESCRIPTION | 10 - MD5 | 20 +- NAMESPACE | 3 NEWS.md | 4 R/global_vars.R | 4 R/helpers.R | 36 +--- R/pairwise_comparisons.R | 32 +-- README.md | 203 +++++++++++++------------ build/pairwiseComparisons.pdf |binary man/pairwise_comparisons.Rd | 4 tests/testthat/test-pairwise_caption_helpers.R | 29 +-- 11 files changed, 173 insertions(+), 172 deletions(-)
More information about pairwiseComparisons at CRAN
Permanent link
Title: Estimated Marginal Means, aka Least-Squares Means
Description: Obtain estimated marginal means (EMMs) for many linear, generalized
linear, and mixed models. Compute contrasts or linear functions of EMMs,
trends, and comparisons of slopes. Plots and other displays.
Least-squares means are discussed, and the term "estimated marginal means"
is suggested, in Searle, Speed, and Milliken (1980) Population marginal means
in the linear model: An alternative to least squares means, The American
Statistician 34(4), 216-221 <doi:10.1080/00031305.1980.10483031>.
Author: Russell V. Lenth [aut, cre, cph],
Paul Buerkner [ctb],
Maxime Herve [ctb],
Jonathon Love [ctb],
Hannes Riebl [ctb],
Henrik Singmann [ctb]
Maintainer: Russell V. Lenth <russell-lenth@uiowa.edu>
Diff between emmeans versions 1.5.3 dated 2020-12-09 and 1.5.4 dated 2021-02-03
DESCRIPTION | 8 ++-- MD5 | 66 ++++++++++++++++++------------------- NEWS.md | 19 ++++++++++ R/emm-list.R | 12 +++--- R/emmGrid-methods.R | 19 +++++----- R/helpers.R | 24 +++++++++++-- R/lqm-support.R | 65 ++++++++++++++++++++++++++++++++---- R/multinom-support.R | 16 +++++++- R/ordinal-support.R | 3 + inst/doc/FAQs.html | 11 +++--- inst/doc/basics.html | 7 ++- inst/doc/comparisons.Rmd | 11 +----- inst/doc/comparisons.html | 18 +++++----- inst/doc/confidence-intervals.html | 17 +++++---- inst/doc/interactions.html | 23 ++++++------ inst/doc/messy-data.R | 3 - inst/doc/messy-data.Rmd | 6 +-- inst/doc/messy-data.html | 23 ++---------- inst/doc/models.Rmd | 22 +++++++++++- inst/doc/models.html | 56 +++++++++++++++++++++++++++---- inst/doc/predictions.html | 7 ++- inst/doc/sophisticated.html | 7 ++- inst/doc/transformations.html | 7 ++- inst/doc/utilities.html | 7 ++- inst/doc/vignette-topics.Rmd | 3 - inst/doc/vignette-topics.html | 12 ++---- inst/doc/xplanations.html | 7 ++- inst/doc/xtending.html | 15 ++++---- man/rbind.emmGrid.Rd | 8 ++-- man/regrid.Rd | 17 +++++---- vignettes/comparisons.Rmd | 11 +----- vignettes/messy-data.Rmd | 6 +-- vignettes/models.Rmd | 22 +++++++++++- vignettes/vignette-topics.Rmd | 3 - 34 files changed, 361 insertions(+), 200 deletions(-)
Title: A 'dplyr' Back End for Databases
Description: A 'dplyr' back end for databases that allows you to
work with remote database tables as if they are in-memory data frames.
Basic features works with any database that has a 'DBI' back end; more
advanced features require 'SQL' translation to be provided by the
package author.
Author: Hadley Wickham [aut, cre],
Maximilian Girlich [aut],
Edgar Ruiz [aut],
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between dbplyr versions 2.0.0 dated 2020-11-03 and 2.1.0 dated 2021-02-03
dbplyr-2.0.0/dbplyr/tests/testthat/test-backend-postgresql-old.R |only dbplyr-2.1.0/dbplyr/DESCRIPTION | 33 - dbplyr-2.1.0/dbplyr/MD5 | 143 +++-- dbplyr-2.1.0/dbplyr/NAMESPACE | 17 dbplyr-2.1.0/dbplyr/NEWS.md | 60 ++ dbplyr-2.1.0/dbplyr/R/backend-.R | 3 dbplyr-2.1.0/dbplyr/R/backend-hana.R | 1 dbplyr-2.1.0/dbplyr/R/backend-mssql.R | 28 - dbplyr-2.1.0/dbplyr/R/backend-mysql.R | 2 dbplyr-2.1.0/dbplyr/R/backend-postgres-old.R | 8 dbplyr-2.1.0/dbplyr/R/backend-postgres.R | 2 dbplyr-2.1.0/dbplyr/R/backend-redshift.R | 23 dbplyr-2.1.0/dbplyr/R/backend-sqlite.R | 30 + dbplyr-2.1.0/dbplyr/R/partial-eval.R | 65 ++ dbplyr-2.1.0/dbplyr/R/src_dbi.R | 7 dbplyr-2.1.0/dbplyr/R/translate-sql-string.R | 51 +- dbplyr-2.1.0/dbplyr/R/translate-sql-window.R | 2 dbplyr-2.1.0/dbplyr/R/translate-sql.R | 26 - dbplyr-2.1.0/dbplyr/R/verb-count.R |only dbplyr-2.1.0/dbplyr/R/verb-distinct.R | 2 dbplyr-2.1.0/dbplyr/R/verb-expand.R |only dbplyr-2.1.0/dbplyr/R/verb-fill.R |only dbplyr-2.1.0/dbplyr/R/verb-pivot-longer.R |only dbplyr-2.1.0/dbplyr/R/verb-pivot-wider.R |only dbplyr-2.1.0/dbplyr/R/verb-pull.R | 10 dbplyr-2.1.0/dbplyr/R/verb-select.R | 26 - dbplyr-2.1.0/dbplyr/R/verb-slice.R | 2 dbplyr-2.1.0/dbplyr/R/verb-summarise.R | 78 ++- dbplyr-2.1.0/dbplyr/R/verb-uncount.R |only dbplyr-2.1.0/dbplyr/R/zzz.R | 9 dbplyr-2.1.0/dbplyr/README.md | 2 dbplyr-2.1.0/dbplyr/build/dbplyr.pdf |binary dbplyr-2.1.0/dbplyr/build/vignette.rds |binary dbplyr-2.1.0/dbplyr/inst/doc/backend-2.Rmd | 5 dbplyr-2.1.0/dbplyr/inst/doc/backend-2.html | 250 --------- dbplyr-2.1.0/dbplyr/inst/doc/dbplyr.html | 255 ---------- dbplyr-2.1.0/dbplyr/inst/doc/new-backend.html | 247 --------- dbplyr-2.1.0/dbplyr/inst/doc/reprex.html | 249 --------- dbplyr-2.1.0/dbplyr/inst/doc/sql.html | 245 --------- dbplyr-2.1.0/dbplyr/inst/doc/translation-function.html | 247 --------- dbplyr-2.1.0/dbplyr/inst/doc/translation-verb.html | 246 --------- dbplyr-2.1.0/dbplyr/man/backend-sqlite.Rd | 1 dbplyr-2.1.0/dbplyr/man/complete.tbl_lazy.Rd |only dbplyr-2.1.0/dbplyr/man/count.tbl_lazy.Rd |only dbplyr-2.1.0/dbplyr/man/dbplyr-package.Rd | 1 dbplyr-2.1.0/dbplyr/man/dbplyr_uncount.Rd |only dbplyr-2.1.0/dbplyr/man/expand.tbl_lazy.Rd |only dbplyr-2.1.0/dbplyr/man/fill.tbl_lazy.Rd |only dbplyr-2.1.0/dbplyr/man/pivot_longer.tbl_lazy.Rd |only dbplyr-2.1.0/dbplyr/man/pivot_wider.tbl_lazy.Rd |only dbplyr-2.1.0/dbplyr/man/replace_na.tbl_lazy.Rd |only dbplyr-2.1.0/dbplyr/man/sql_variant.Rd | 2 dbplyr-2.1.0/dbplyr/man/src_dbi.Rd | 3 dbplyr-2.1.0/dbplyr/man/summarise.tbl_lazy.Rd | 16 dbplyr-2.1.0/dbplyr/man/tbl.src_dbi.Rd | 2 dbplyr-2.1.0/dbplyr/man/translate_sql.Rd | 28 - dbplyr-2.1.0/dbplyr/tests/testthat/_snaps/backend-sqlite.md | 30 + dbplyr-2.1.0/dbplyr/tests/testthat/_snaps/partial-eval.md | 85 ++- dbplyr-2.1.0/dbplyr/tests/testthat/_snaps/translate-sql-string.md |only dbplyr-2.1.0/dbplyr/tests/testthat/_snaps/verb-count.md |only dbplyr-2.1.0/dbplyr/tests/testthat/_snaps/verb-expand.md |only dbplyr-2.1.0/dbplyr/tests/testthat/_snaps/verb-fill.md |only dbplyr-2.1.0/dbplyr/tests/testthat/_snaps/verb-pivot-longer.md |only dbplyr-2.1.0/dbplyr/tests/testthat/_snaps/verb-pivot-wider.md |only dbplyr-2.1.0/dbplyr/tests/testthat/_snaps/verb-select.md | 7 dbplyr-2.1.0/dbplyr/tests/testthat/_snaps/verb-slice.md | 2 dbplyr-2.1.0/dbplyr/tests/testthat/_snaps/verb-summarise.md | 17 dbplyr-2.1.0/dbplyr/tests/testthat/_snaps/verb-uncount.md |only dbplyr-2.1.0/dbplyr/tests/testthat/test-backend-mssql.R | 26 + dbplyr-2.1.0/dbplyr/tests/testthat/test-backend-postgres-old.R |only dbplyr-2.1.0/dbplyr/tests/testthat/test-backend-redshift.R | 10 dbplyr-2.1.0/dbplyr/tests/testthat/test-backend-sqlite.R | 40 + dbplyr-2.1.0/dbplyr/tests/testthat/test-partial-eval.R | 62 +- dbplyr-2.1.0/dbplyr/tests/testthat/test-translate-sql-string.R | 40 + dbplyr-2.1.0/dbplyr/tests/testthat/test-translate-sql.R | 11 dbplyr-2.1.0/dbplyr/tests/testthat/test-verb-count.R |only dbplyr-2.1.0/dbplyr/tests/testthat/test-verb-distinct.R | 5 dbplyr-2.1.0/dbplyr/tests/testthat/test-verb-do.R | 2 dbplyr-2.1.0/dbplyr/tests/testthat/test-verb-expand.R |only dbplyr-2.1.0/dbplyr/tests/testthat/test-verb-fill.R |only dbplyr-2.1.0/dbplyr/tests/testthat/test-verb-pivot-longer.R |only dbplyr-2.1.0/dbplyr/tests/testthat/test-verb-pivot-wider.R |only dbplyr-2.1.0/dbplyr/tests/testthat/test-verb-pull.R | 7 dbplyr-2.1.0/dbplyr/tests/testthat/test-verb-select.R | 7 dbplyr-2.1.0/dbplyr/tests/testthat/test-verb-summarise.R | 28 + dbplyr-2.1.0/dbplyr/tests/testthat/test-verb-uncount.R |only dbplyr-2.1.0/dbplyr/vignettes/backend-2.Rmd | 5 87 files changed, 943 insertions(+), 1868 deletions(-)
Title: Interface to 'Digital Ocean'
Description: Provides a set of functions for interacting with the 'Digital
Ocean' API <https://www.digitalocean.com/>, including
creating images, destroying them, rebooting, getting details on regions, and
available images.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
Hadley Wickham [aut],
Winston Chang [aut],
Bob Rudis [ctb],
Bryce Mecum [ctb] (<https://orcid.org/0000-0002-0381-3766>),
RStudio [cph]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between analogsea versions 0.9.0 dated 2020-10-08 and 0.9.4 dated 2021-02-03
analogsea-0.9.0/analogsea/README.md |only analogsea-0.9.4/analogsea/DESCRIPTION | 6 analogsea-0.9.4/analogsea/LICENSE | 2 analogsea-0.9.4/analogsea/MD5 | 11 - analogsea-0.9.4/analogsea/NEWS.md | 8 + analogsea-0.9.4/analogsea/R/debian.R | 200 +++++++++++++++++++++++++++----- analogsea-0.9.4/analogsea/man/debian.Rd | 71 ++++++++++- 7 files changed, 249 insertions(+), 49 deletions(-)
Title: Scale Mixture of Skew-Normal Linear Mixed Models
Description: It fits scale mixture of skew-normal linear mixed models using an expectation–maximization (EM) type algorithm, including some possibilities for modeling the within-subject dependence. Details can be found in Schumacher, Lachos and Matos (2021) <doi:10.1002/sim.8870>.
Author: Fernanda L. Schumacher [aut, cre]
(<https://orcid.org/0000-0002-5724-8918>),
Larissa A. Matos [aut] (<https://orcid.org/0000-0002-2635-0901>),
Victor H. Lachos [aut] (<https://orcid.org/0000-0002-7239-2459>)
Maintainer: Fernanda L. Schumacher <fernandalschumacher@gmail.com>
Diff between skewlmm versions 0.2.2 dated 2020-07-08 and 0.2.3 dated 2021-02-03
DESCRIPTION | 25 ++-- MD5 | 68 ++++++----- NEWS.md |only R/auxfunctions-sim.R | 27 +++- R/auxfunctions.R | 188 ++++++++++++++++++++----------- R/mainfunctions-sim.R | 21 ++- R/mainfunctions.R | 48 +++++-- R/residuals.R | 3 README.md | 94 +++++++-------- build |only man/acfresid.Rd | 15 +- man/errorVar.Rd | 15 +- man/figures/README-example1-1.png |only man/figures/README-example2-1.png |only man/figures/README-example2-2.png |only man/figures/README-example2-3.png |only man/figures/README-unnamed-chunk-2-1.png |binary man/figures/README-unnamed-chunk-3-1.png |binary man/figures/README-unnamed-chunk-3-2.png |binary man/fitted.SMN.Rd | 10 - man/fitted.SMSN.Rd | 10 - man/healy.plot.Rd | 7 - man/lr.test.Rd | 9 - man/mahalDist.Rd | 9 - man/plot.Rd | 12 - man/plot.acfresid.Rd | 13 -- man/plot.mahalDist.Rd | 14 -- man/predict.SMN.Rd | 12 - man/predict.SMSN.Rd | 11 - man/print.SMN.Rd | 11 - man/print.SMSN.Rd | 12 - man/ranef.Rd | 9 - man/residuals.Rd | 12 - man/rsmsn.lmm.Rd | 44 +++---- man/smn.lmm.Rd | 50 ++++---- man/smsn.lmm.Rd | 49 ++++---- man/summary.SMN.Rd | 12 - man/summary.SMSN.Rd | 11 - 38 files changed, 419 insertions(+), 402 deletions(-)
Title: Assessment of Regression Models Performance
Description: Utilities for computing measures to assess model quality,
which are not directly provided by R's 'base' or 'stats' packages. These
include e.g. measures like r-squared, intraclass correlation coefficient
(Nakagawa, Johnson & Schielzeth (2017) <doi:10.1098/rsif.2017.0213>),
root mean squared error or functions to check models for overdispersion,
singularity or zero-inflation and more. Functions apply to a large variety of
regression models, including generalized linear models, mixed effects models
and Bayesian models.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>),
Dominique Makowski [aut, ctb] (<https://orcid.org/0000-0001-5375-9967>),
Philip Waggoner [aut, ctb] (<https://orcid.org/0000-0002-7825-7573>),
Indrajeet Patil [aut, ctb] (<https://orcid.org/0000-0003-1995-6531>),
Mattan S. Ben-Shachar [aut, ctb]
(<https://orcid.org/0000-0002-4287-4801>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between performance versions 0.6.1 dated 2020-12-09 and 0.7.0 dated 2021-02-03
performance-0.6.1/performance/R/performance_lrt.R |only performance-0.6.1/performance/man/performance_lrt.Rd |only performance-0.7.0/performance/DESCRIPTION | 20 - performance-0.7.0/performance/MD5 | 130 +++++----- performance-0.7.0/performance/NAMESPACE | 46 +++ performance-0.7.0/performance/NEWS.md | 46 +++ performance-0.7.0/performance/R/backports.R |only performance-0.7.0/performance/R/check_collinearity.R | 28 +- performance-0.7.0/performance/R/check_convergence.R | 2 performance-0.7.0/performance/R/check_heteroscedasticity.R | 9 performance-0.7.0/performance/R/check_homogeneity.R | 12 performance-0.7.0/performance/R/check_itemscale.R | 2 performance-0.7.0/performance/R/check_model.R | 9 performance-0.7.0/performance/R/check_overdispersion.R | 4 performance-0.7.0/performance/R/check_zeroinflation.R | 2 performance-0.7.0/performance/R/compare_performance.R | 83 +----- performance-0.7.0/performance/R/cronbachs_alpha.R | 2 performance-0.7.0/performance/R/format.R | 10 performance-0.7.0/performance/R/get_gradients.R |only performance-0.7.0/performance/R/icc.R | 18 - performance-0.7.0/performance/R/item_difficulty.R | 2 performance-0.7.0/performance/R/item_reliability.R | 4 performance-0.7.0/performance/R/logLik.R | 8 performance-0.7.0/performance/R/model_performance.R | 1 performance-0.7.0/performance/R/model_performance.bayesian.R | 2 performance-0.7.0/performance/R/model_performance.ivreg.R |only performance-0.7.0/performance/R/model_performance.lm.R | 5 performance-0.7.0/performance/R/performance_aicc.R | 33 +- performance-0.7.0/performance/R/performance_hosmer.R | 2 performance-0.7.0/performance/R/performance_mse.R | 52 ---- performance-0.7.0/performance/R/performance_pcp.R | 8 performance-0.7.0/performance/R/performance_rmse.R | 2 performance-0.7.0/performance/R/performance_rse.R | 4 performance-0.7.0/performance/R/performance_score.R | 2 performance-0.7.0/performance/R/pp_check.R | 2 performance-0.7.0/performance/R/print-methods.R | 32 +- performance-0.7.0/performance/R/print_md.R | 18 + performance-0.7.0/performance/R/r2.R | 12 performance-0.7.0/performance/R/r2_bayes.R | 4 performance-0.7.0/performance/R/r2_coxsnell.R | 14 - performance-0.7.0/performance/R/r2_mcfadden.R | 14 - performance-0.7.0/performance/R/r2_nagelkerke.R | 8 performance-0.7.0/performance/R/test_bf.R |only performance-0.7.0/performance/R/test_likelihoodratio.R |only performance-0.7.0/performance/R/test_performance.R |only performance-0.7.0/performance/R/test_vuong.R |only performance-0.7.0/performance/R/test_wald.R |only performance-0.7.0/performance/README.md | 90 +++--- performance-0.7.0/performance/build/partial.rdb |binary performance-0.7.0/performance/man/check_convergence.Rd | 2 performance-0.7.0/performance/man/check_homogeneity.Rd | 2 performance-0.7.0/performance/man/check_itemscale.Rd | 2 performance-0.7.0/performance/man/check_model.Rd | 5 performance-0.7.0/performance/man/compare_performance.Rd | 43 --- performance-0.7.0/performance/man/figures/unnamed-chunk-13-1.png |binary performance-0.7.0/performance/man/icc.Rd | 8 performance-0.7.0/performance/man/model_performance.Rd | 1 performance-0.7.0/performance/man/model_performance.ivreg.Rd |only performance-0.7.0/performance/man/model_performance.stanreg.Rd | 2 performance-0.7.0/performance/man/performance_score.Rd | 2 performance-0.7.0/performance/man/pp_check.Rd | 2 performance-0.7.0/performance/man/r2_bayes.Rd | 4 performance-0.7.0/performance/man/reexports.Rd | 3 performance-0.7.0/performance/man/test_performance.Rd |only performance-0.7.0/performance/tests/testthat/test-compare_performance.R | 6 performance-0.7.0/performance/tests/testthat/test-coxph.R | 12 performance-0.7.0/performance/tests/testthat/test-icc.R | 12 performance-0.7.0/performance/tests/testthat/test-model_performance.merMod.R | 2 performance-0.7.0/performance/tests/testthat/test-r2_bayes.R | 18 - performance-0.7.0/performance/tests/testthat/test-rmse.R | 1 performance-0.7.0/performance/tests/testthat/test-test_likelihoodratio.R |only performance-0.7.0/performance/tests/testthat/test-test_performance.R |only performance-0.7.0/performance/tests/testthat/test-test_vuong.R |only performance-0.7.0/performance/tests/testthat/test-test_wald.R |only 74 files changed, 471 insertions(+), 398 deletions(-)
Title: Client for the Comprehensive Knowledge Archive Network ('CKAN')
API
Description: Client for 'CKAN' API (<https://ckan.org/>). Includes interface
to 'CKAN' 'APIs' for search, list, show for packages, organizations, and
resources. In addition, provides an interface to the 'datastore' API.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
Imanuel Costigan [aut],
Wush Wu [aut] (<https://orcid.org/0000-0001-5180-0567>),
Florian Mayer [aut] (<https://orcid.org/0000-0003-4269-4242>),
Sharla Gelfand [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between ckanr versions 0.5.0 dated 2020-07-30 and 0.6.0 dated 2021-02-03
ckanr-0.5.0/ckanr/README.md |only ckanr-0.5.0/ckanr/build |only ckanr-0.5.0/ckanr/inst/doc |only ckanr-0.5.0/ckanr/vignettes |only ckanr-0.6.0/ckanr/DESCRIPTION | 11 - ckanr-0.6.0/ckanr/MD5 | 180 ++++++++--------- ckanr-0.6.0/ckanr/NAMESPACE | 1 ckanr-0.6.0/ckanr/NEWS.md | 18 + ckanr-0.6.0/ckanr/R/ckan_fetch.R | 78 +++++-- ckanr-0.6.0/ckanr/R/ckan_info.R | 2 ckanr-0.6.0/ckanr/R/ckanr-package.R | 4 ckanr-0.6.0/ckanr/R/ckanr_settings.R | 12 - ckanr-0.6.0/ckanr/R/ds_create.R | 2 ckanr-0.6.0/ckanr/R/group_create.R | 12 - ckanr-0.6.0/ckanr/R/group_delete.R | 2 ckanr-0.6.0/ckanr/R/on_load.R | 2 ckanr-0.6.0/ckanr/R/organization_purge.R |only ckanr-0.6.0/ckanr/R/package_create.R | 14 - ckanr-0.6.0/ckanr/R/package_delete.R | 2 ckanr-0.6.0/ckanr/R/package_list.R | 2 ckanr-0.6.0/ckanr/R/package_patch.R | 8 ckanr-0.6.0/ckanr/R/package_update.R | 6 ckanr-0.6.0/ckanr/R/related_delete.R | 2 ckanr-0.6.0/ckanr/R/resource_create.R | 6 ckanr-0.6.0/ckanr/R/resource_delete.R | 2 ckanr-0.6.0/ckanr/R/servers.R | 69 ------ ckanr-0.6.0/ckanr/R/zzz.R | 19 + ckanr-0.6.0/ckanr/man/changes.Rd | 19 + ckanr-0.6.0/ckanr/man/ckan_fetch.Rd | 33 +++ ckanr-0.6.0/ckanr/man/ckan_info.Rd | 2 ckanr-0.6.0/ckanr/man/ckanr-package.Rd | 4 ckanr-0.6.0/ckanr/man/ckanr_setup.Rd | 12 - ckanr-0.6.0/ckanr/man/dashboard_activity_list.Rd | 13 - ckanr-0.6.0/ckanr/man/dashboard_count.Rd | 13 - ckanr-0.6.0/ckanr/man/ds_create.Rd | 15 - ckanr-0.6.0/ckanr/man/ds_create_dataset.Rd | 13 - ckanr-0.6.0/ckanr/man/ds_search.Rd | 13 - ckanr-0.6.0/ckanr/man/ds_search_sql.Rd | 13 - ckanr-0.6.0/ckanr/man/group_create.Rd | 25 +- ckanr-0.6.0/ckanr/man/group_delete.Rd | 5 ckanr-0.6.0/ckanr/man/group_list.Rd | 19 + ckanr-0.6.0/ckanr/man/group_patch.Rd | 13 - ckanr-0.6.0/ckanr/man/group_show.Rd | 13 - ckanr-0.6.0/ckanr/man/group_update.Rd | 13 - ckanr-0.6.0/ckanr/man/license_list.Rd | 13 - ckanr-0.6.0/ckanr/man/organization_create.Rd | 13 - ckanr-0.6.0/ckanr/man/organization_delete.Rd | 13 - ckanr-0.6.0/ckanr/man/organization_list.Rd | 13 - ckanr-0.6.0/ckanr/man/organization_purge.Rd |only ckanr-0.6.0/ckanr/man/organization_show.Rd | 13 - ckanr-0.6.0/ckanr/man/package_activity_list.Rd | 19 + ckanr-0.6.0/ckanr/man/package_create.Rd | 24 +- ckanr-0.6.0/ckanr/man/package_delete.Rd | 5 ckanr-0.6.0/ckanr/man/package_list.Rd | 21 + ckanr-0.6.0/ckanr/man/package_list_current.Rd | 19 + ckanr-0.6.0/ckanr/man/package_patch.Rd | 17 + ckanr-0.6.0/ckanr/man/package_revision_list.Rd | 13 - ckanr-0.6.0/ckanr/man/package_search.Rd | 13 - ckanr-0.6.0/ckanr/man/package_show.Rd | 13 - ckanr-0.6.0/ckanr/man/package_update.Rd | 17 + ckanr-0.6.0/ckanr/man/ping.Rd | 13 - ckanr-0.6.0/ckanr/man/related_create.Rd | 13 - ckanr-0.6.0/ckanr/man/related_delete.Rd | 5 ckanr-0.6.0/ckanr/man/related_list.Rd | 19 + ckanr-0.6.0/ckanr/man/related_show.Rd | 13 - ckanr-0.6.0/ckanr/man/related_update.Rd | 13 - ckanr-0.6.0/ckanr/man/resource_create.Rd | 17 + ckanr-0.6.0/ckanr/man/resource_delete.Rd | 5 ckanr-0.6.0/ckanr/man/resource_patch.Rd | 13 - ckanr-0.6.0/ckanr/man/resource_search.Rd | 13 - ckanr-0.6.0/ckanr/man/resource_show.Rd | 13 - ckanr-0.6.0/ckanr/man/resource_update.Rd | 13 - ckanr-0.6.0/ckanr/man/revision_list.Rd | 13 - ckanr-0.6.0/ckanr/man/servers.Rd | 5 ckanr-0.6.0/ckanr/man/tag_create.Rd | 13 - ckanr-0.6.0/ckanr/man/tag_list.Rd | 13 - ckanr-0.6.0/ckanr/man/tag_search.Rd | 19 + ckanr-0.6.0/ckanr/man/tag_show.Rd | 13 - ckanr-0.6.0/ckanr/man/user_activity_list.Rd | 19 + ckanr-0.6.0/ckanr/man/user_create.Rd | 13 - ckanr-0.6.0/ckanr/man/user_delete.Rd | 13 - ckanr-0.6.0/ckanr/man/user_followee_count.Rd | 13 - ckanr-0.6.0/ckanr/man/user_follower_count.Rd | 13 - ckanr-0.6.0/ckanr/man/user_follower_list.Rd | 13 - ckanr-0.6.0/ckanr/man/user_list.Rd | 13 - ckanr-0.6.0/ckanr/man/user_show.Rd | 13 - ckanr-0.6.0/ckanr/tests/test-all.R | 2 ckanr-0.6.0/ckanr/tests/testthat/helper-ckanr.R | 5 ckanr-0.6.0/ckanr/tests/testthat/test-ckanr_settings.R | 2 ckanr-0.6.0/ckanr/tests/testthat/test-group_show.R | 9 ckanr-0.6.0/ckanr/tests/testthat/test-resource_show.R | 20 + ckanr-0.6.0/ckanr/tests/testthat/test-tag_search.R | 2 ckanr-0.6.0/ckanr/tests/testthat/test-user_list.R | 4 93 files changed, 725 insertions(+), 573 deletions(-)
Title: Cache R Objects with Automatic Pruning
Description: Key-value stores with automatic pruning. Caches can limit
either their total size or the age of the oldest object (or both),
automatically pruning objects to maintain the constraints.
Author: Winston Chang [aut, cre],
RStudio [cph, fnd]
Maintainer: Winston Chang <winston@rstudio.com>
Diff between cachem versions 1.0.1 dated 2021-01-21 and 1.0.2 dated 2021-02-03
DESCRIPTION | 6 +- MD5 | 16 +++--- NEWS.md | 9 +++ R/cache-disk.R | 4 + R/cache-memory.R | 37 ++++++++++++--- README.md | 17 ++----- man/cache_disk.Rd | 4 + tests/testthat/test-cache-disk.R | 92 +++++++++++++++++++++++++++++++++++++++ tests/testthat/test-cache-mem.R | 79 +++++++++++++++++++++++++++++++++ 9 files changed, 233 insertions(+), 31 deletions(-)
Title: Kinetic Evaluation of Chemical Degradation Data
Description: Calculation routines based on the FOCUS Kinetics Report (2006,
2014). Includes a function for conveniently defining differential equation
models, model solution based on eigenvalues if possible or using numerical
solvers. If a C compiler (on windows: 'Rtools') is installed, differential
equation models are solved using automatically generated C functions. Please
note that no warranty is implied for correctness of results or fitness for a
particular purpose.
Author: Johannes Ranke [aut, cre, cph]
(<https://orcid.org/0000-0003-4371-6538>),
Katrin Lindenberger [ctb] (contributed to mkinresplot()),
René Lehmann [ctb] (ilr() and invilr()),
Eurofins Regulatory AG [cph] (copyright for some of the contributions
of JR 2012-2014)
Maintainer: Johannes Ranke <jranke@uni-bremen.de>
Diff between mkin versions 0.9.50.3 dated 2020-10-08 and 1.0.0 dated 2021-02-03
mkin-0.9.50.3/mkin/R/plot.nlme.mmkin.R |only mkin-0.9.50.3/mkin/man/mkinsub.Rd |only mkin-0.9.50.3/mkin/man/plot.nlme.mmkin.Rd |only mkin-0.9.50.3/mkin/man/print.mkinds.Rd |only mkin-0.9.50.3/mkin/man/print.mkinmod.Rd |only mkin-0.9.50.3/mkin/tests/testthat/DFOP_FOCUS_C_messages.txt |only mkin-1.0.0/mkin/DESCRIPTION | 33 - mkin-1.0.0/mkin/MD5 | 199 +++++---- mkin-1.0.0/mkin/NAMESPACE | 22 - mkin-1.0.0/mkin/NEWS.md | 32 + mkin-1.0.0/mkin/R/D24_2014.R |only mkin-1.0.0/mkin/R/add_err.R | 2 mkin-1.0.0/mkin/R/create_deg_func.R | 1 mkin-1.0.0/mkin/R/dimethenamid_2018.R |only mkin-1.0.0/mkin/R/endpoints.R | 87 +--- mkin-1.0.0/mkin/R/f_time_norm_focus.R |only mkin-1.0.0/mkin/R/focus_soil_moisture.R |only mkin-1.0.0/mkin/R/lrtest.mkinfit.R | 2 mkin-1.0.0/mkin/R/mixed.mmkin.R |only mkin-1.0.0/mkin/R/mkin_wide_to_long.R | 2 mkin-1.0.0/mkin/R/mkinds.R | 118 +++++ mkin-1.0.0/mkin/R/mkinerrmin.R | 4 mkin-1.0.0/mkin/R/mkinerrplot.R | 2 mkin-1.0.0/mkin/R/mkinfit.R | 46 +- mkin-1.0.0/mkin/R/mkinmod.R | 90 ++-- mkin-1.0.0/mkin/R/mkinpredict.R | 45 +- mkin-1.0.0/mkin/R/mkinresplot.R | 2 mkin-1.0.0/mkin/R/mkinsub.R | 20 mkin-1.0.0/mkin/R/mmkin.R | 95 ++++ mkin-1.0.0/mkin/R/nlme.R | 19 mkin-1.0.0/mkin/R/nlme.mmkin.R | 202 +++++++--- mkin-1.0.0/mkin/R/plot.mixed.mmkin.R |only mkin-1.0.0/mkin/R/plot.mkinfit.R | 6 mkin-1.0.0/mkin/R/plot.mmkin.R | 24 - mkin-1.0.0/mkin/R/sigma_twocomp.R | 36 + mkin-1.0.0/mkin/R/summary.nlme.mmkin.R |only mkin-1.0.0/mkin/R/transform_odeparms.R | 61 +-- mkin-1.0.0/mkin/build/partial.rdb |only mkin-1.0.0/mkin/build/vignette.rds |binary mkin-1.0.0/mkin/data/D24_2014.rda |only mkin-1.0.0/mkin/data/dimethenamid_2018.rda |only mkin-1.0.0/mkin/data/focus_soil_moisture.rda |only mkin-1.0.0/mkin/inst/dataset_generation |only mkin-1.0.0/mkin/inst/doc/FOCUS_D.html | 97 ++-- mkin-1.0.0/mkin/inst/doc/FOCUS_L.html | 146 +++---- mkin-1.0.0/mkin/inst/doc/mkin.html | 30 - mkin-1.0.0/mkin/inst/doc/twa.html | 14 mkin-1.0.0/mkin/man/D24_2014.Rd |only mkin-1.0.0/mkin/man/Extract.mmkin.Rd | 3 mkin-1.0.0/mkin/man/add_err.Rd | 2 mkin-1.0.0/mkin/man/dimethenamid_2018.Rd |only mkin-1.0.0/mkin/man/endpoints.Rd | 15 mkin-1.0.0/mkin/man/experimental_data_for_UBA.Rd | 8 mkin-1.0.0/mkin/man/f_time_norm_focus.Rd |only mkin-1.0.0/mkin/man/focus_soil_moisture.Rd |only mkin-1.0.0/mkin/man/mccall81_245T.Rd | 18 mkin-1.0.0/mkin/man/mixed.Rd |only mkin-1.0.0/mkin/man/mkinds.Rd | 14 mkin-1.0.0/mkin/man/mkindsg.Rd |only mkin-1.0.0/mkin/man/mkinfit.Rd | 23 - mkin-1.0.0/mkin/man/mkinmod.Rd | 85 +++- mkin-1.0.0/mkin/man/mkinpredict.Rd | 21 - mkin-1.0.0/mkin/man/mmkin.Rd | 13 mkin-1.0.0/mkin/man/nlme.Rd | 7 mkin-1.0.0/mkin/man/nlme.mmkin.Rd | 113 +++-- mkin-1.0.0/mkin/man/plot.mixed.mmkin.Rd |only mkin-1.0.0/mkin/man/plot.mkinfit.Rd | 2 mkin-1.0.0/mkin/man/plot.mmkin.Rd | 3 mkin-1.0.0/mkin/man/print.mmkin.Rd |only mkin-1.0.0/mkin/man/reexports.Rd | 5 mkin-1.0.0/mkin/man/sigma_twocomp.Rd | 21 + mkin-1.0.0/mkin/man/summary.nlme.mmkin.Rd |only mkin-1.0.0/mkin/man/transform_odeparms.Rd | 19 mkin-1.0.0/mkin/tests/figs/deps.txt | 4 mkin-1.0.0/mkin/tests/figs/evaluations-according-to-2015-nafta-guidance/nafta-sop-appendix-b.svg | 18 mkin-1.0.0/mkin/tests/figs/evaluations-according-to-2015-nafta-guidance/plot-nafta-analysis.svg | 18 mkin-1.0.0/mkin/tests/figs/plotting/mixed-model-fit-for-mmkin-object.svg |only mkin-1.0.0/mkin/tests/figs/plotting/mixed-model-fit-for-nlme-object.svg |only mkin-1.0.0/mkin/tests/figs/plotting/mixed-model-fit-for-saem-object-with-mkin-transformations.svg |only mkin-1.0.0/mkin/tests/figs/plotting/mixed-model-fit-for-saem-object-with-saemix-transformations.svg |only mkin-1.0.0/mkin/tests/figs/plotting/mkinerrplot-for-focus-c-sfo.svg | 2 mkin-1.0.0/mkin/tests/figs/plotting/mkinfit-plot-for-focus-c-with-defaults.svg | 4 mkin-1.0.0/mkin/tests/figs/plotting/mkinfit-plot-for-focus-c-with-residuals-like-in-gmkin.svg | 6 mkin-1.0.0/mkin/tests/figs/plotting/mkinfit-plot-for-focus-c-with-sep-true.svg | 6 mkin-1.0.0/mkin/tests/figs/plotting/mkinparplot-for-focus-c-sfo.svg | 4 mkin-1.0.0/mkin/tests/figs/plotting/mmkin-plot-for-focus-c.svg | 24 - mkin-1.0.0/mkin/tests/figs/plotting/mmkin-plot-for-sfo-focus-c-and-d.svg | 12 mkin-1.0.0/mkin/tests/figs/plotting/plot-err-for-focus-d.svg | 88 ++-- mkin-1.0.0/mkin/tests/figs/plotting/plot-errmod-with-focus-c-tc.svg | 6 mkin-1.0.0/mkin/tests/figs/plotting/plot-errmod-with-focus-d-obs-eigen.svg | 88 ++-- mkin-1.0.0/mkin/tests/figs/plotting/plot-errmod-with-sfo-lin-a-obs.svg | 58 +- mkin-1.0.0/mkin/tests/figs/plotting/plot-errmod-with-sfo-lin-a-tc.svg | 56 +- mkin-1.0.0/mkin/tests/figs/plotting/plot-res-for-focus-c.svg | 6 mkin-1.0.0/mkin/tests/figs/plotting/plot-res-for-focus-d.svg | 88 ++-- mkin-1.0.0/mkin/tests/testthat/FOCUS_2006_C_mkinds.txt | 3 mkin-1.0.0/mkin/tests/testthat/FOCUS_2006_D.csf | 2 mkin-1.0.0/mkin/tests/testthat/experimental_data_for_UBA_2019_mkindsg.txt |only mkin-1.0.0/mkin/tests/testthat/print_mmkin_biphasic_mixed.txt |only mkin-1.0.0/mkin/tests/testthat/print_mmkin_parent.txt |only mkin-1.0.0/mkin/tests/testthat/print_nlme_biphasic.txt |only mkin-1.0.0/mkin/tests/testthat/print_sfo_saem_1.txt |only mkin-1.0.0/mkin/tests/testthat/setup_script.R | 123 +++++- mkin-1.0.0/mkin/tests/testthat/summary_DFOP_FOCUS_C.txt | 4 mkin-1.0.0/mkin/tests/testthat/summary_DFOP_FOCUS_D_deSolve.txt | 4 mkin-1.0.0/mkin/tests/testthat/summary_DFOP_FOCUS_D_eigen.txt | 4 mkin-1.0.0/mkin/tests/testthat/summary_nlme_biphasic_s.txt |only mkin-1.0.0/mkin/tests/testthat/test_AIC.R | 1 mkin-1.0.0/mkin/tests/testthat/test_CAKE_export.R | 5 mkin-1.0.0/mkin/tests/testthat/test_FOCUS_D_UBA_expertise.R | 2 mkin-1.0.0/mkin/tests/testthat/test_confidence.R | 17 mkin-1.0.0/mkin/tests/testthat/test_error_models.R | 2 mkin-1.0.0/mkin/tests/testthat/test_f_time_norm.R |only mkin-1.0.0/mkin/tests/testthat/test_mixed.R |only mkin-1.0.0/mkin/tests/testthat/test_mkinds.R | 7 mkin-1.0.0/mkin/tests/testthat/test_mkinfit_errors.R | 16 mkin-1.0.0/mkin/tests/testthat/test_nafta.R | 4 mkin-1.0.0/mkin/tests/testthat/test_nlme.R | 28 - mkin-1.0.0/mkin/tests/testthat/test_plot.R | 38 + mkin-1.0.0/mkin/tests/testthat/test_schaefer07_complex_case.R | 4 119 files changed, 1626 insertions(+), 935 deletions(-)
Title: Custom Inputs Widgets for Shiny
Description: Collection of custom input controls and user interface components for 'Shiny' applications.
Give your applications a unique and colorful style !
Author: Victor Perrier [aut, cre, cph],
Fanny Meyer [aut],
David Granjon [aut],
Ian Fellows [ctb] (Methods for mutating vertical tabs &
updateMultiInput),
Wil Davis [ctb] (numericRangeInput function),
Spencer Matthews [ctb] (autoNumeric methods),
JavaScript and CSS libraries authors [ctb, cph] (All authors are listed
in LICENSE.md)
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between shinyWidgets versions 0.5.6 dated 2021-01-20 and 0.5.7 dated 2021-02-03
DESCRIPTION | 13 MD5 | 28 NEWS.md | 10 R/chooseSliderSkin.R | 46 + R/dependencies.R | 657 +++++++++---------- R/input-airDatepicker.R | 8 inst/assets/air-datepicker2/airdatepicker-custom.css |only inst/assets/air-datepicker2/datepicker-bindings.js | 538 ++++++++------- inst/assets/bootstrap-select/picker-bindings.js | 158 ++-- inst/assets/ion-rangeslider |only inst/assets/shinyWidgets-bindings.min.js | 2 inst/assets/tools.R | 3 man/airDatepicker.Rd | 3 man/updateNumericInputIcon.Rd | 10 man/updateTextInputIcon.Rd | 8 15 files changed, 799 insertions(+), 685 deletions(-)
Title: Functions for Reading Ontologies into R
Description: Functions for reading ontologies into R as lists and manipulating sets of ontological terms - 'ontologyX: A suite of R packages for working with ontological data', Greene et al 2017 <doi:10.1093/bioinformatics/btw763>.
Author: Daniel Greene <dg333@cam.ac.uk>
Maintainer: Daniel Greene <dg333@cam.ac.uk>
Diff between ontologyIndex versions 2.5 dated 2019-01-08 and 2.7 dated 2021-02-03
DESCRIPTION | 12 +++--- MD5 | 67 +++++++++++++++++------------------ NAMESPACE | 1 R/data.R | 4 +- build/vignette.rds |binary data/go.RData |binary data/hpo.RData |binary data/mpo.RData |binary inst/doc/intro-to-ontologyX.R | 16 ++++---- inst/doc/intro-to-ontologyX.Rmd | 2 - inst/doc/intro-to-ontologyX.html | 48 ++++++++++++++++--------- inst/doc/reading-ontologies.R | 18 ++++----- inst/doc/reading-ontologies.html | 40 ++++++++++++++------ man/as.data.frame.ontology_index.Rd |only man/check.Rd | 1 man/exclude_descendants.Rd | 1 man/get_ancestors.Rd | 1 man/get_descendants.Rd | 1 man/get_ontology.Rd | 8 +--- man/get_relation_names.Rd | 1 man/get_term_descendancy_matrix.Rd | 4 -- man/get_term_frequencies.Rd | 1 man/get_term_info_content.Rd | 1 man/get_term_property.Rd | 1 man/go.Rd | 5 +- man/hpo.Rd | 5 +- man/intersection_with_descendants.Rd | 1 man/minimal_set.Rd | 1 man/mpo.Rd | 5 +- man/ontologyIndex-package.Rd | 2 + man/ontology_index.Rd | 11 ++++- man/print.ontology_index.Rd | 5 +- man/propagate_relations.Rd | 10 +++-- man/prune_descendants.Rd | 1 vignettes/intro-to-ontologyX.Rmd | 2 - 35 files changed, 155 insertions(+), 121 deletions(-)
Title: Estimating and Mapping Disaggregated Indicators
Description: Functions that support estimating, assessing and mapping regional
disaggregated indicators. So far, estimation methods comprise direct estimation,
the model-based unit-level approach Empirical Best Prediction (see "Small area
estimation of poverty indicators" by Molina and Rao (2010) \doi{10.1002/cjs.10051}),
the area-level model (see "Estimates of income for small places: An
application of James-Stein procedures to Census Data" by Fay and Herriot (1979)
\doi{10.1080/01621459.1979.10482505}) and various extensions of it (adjusted variance
estimation methods, log and arcsin transformation, spatial, robust and measurement
error models), as well as their precision estimates. The assessment of the used model
is supported by a summary and diagnostic plots. For a suitable presentation of
estimates, map plots can be easily created. Furthermore, results can easily be
exported to excel. For a detailed description of the package and the methods used
see "The {R} Package {emdi} for Estimating and Mapping Regionally Disaggregated Indicators" by Kreutzmann et al. (2019) <doi:10.18637/jss.v091.i07> and the second package vignette "A Framework for Producing Small Area Estimates Based on Area-Level Models in {R}".
Author: Sylvia Harmening [aut],
Ann-Kristin Kreutzmann [aut],
Soeren Pannier [aut, cre],
Natalia Rojas-Perilla [aut],
Nicola Salvati [aut],
Timo Schmid [aut],
Matthias Templ [aut],
Nikos Tzavidis [aut],
Nora Würz [aut]
Maintainer: Soeren Pannier <soeren.pannier@fu-berlin.de>
Diff between emdi versions 2.0.1 dated 2020-07-10 and 2.0.2 dated 2021-02-03
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emdi-2.0.2/emdi/R/ebp.R | 37 emdi-2.0.2/emdi/R/emdi.R | 24 emdi-2.0.2/emdi/R/emdiObject.R | 61 - emdi-2.0.2/emdi/R/estimators.emdi.R | 147 -- emdi-2.0.2/emdi/R/eusilcA_prox.R | 3 emdi-2.0.2/emdi/R/framework_ebp.R | 4 emdi-2.0.2/emdi/R/map_plot.R | 2 emdi-2.0.2/emdi/R/nlme_methods.R |only emdi-2.0.2/emdi/R/plot.ebp.R |only emdi-2.0.2/emdi/R/plot.emdi.R | 196 +-- emdi-2.0.2/emdi/R/plot.fh.R |only emdi-2.0.2/emdi/R/print.emdi.R | 231 ++-- emdi-2.0.2/emdi/R/qqnorm.R |only emdi-2.0.2/emdi/R/spatialcor.R | 3 emdi-2.0.2/emdi/R/stats_methods.R |only emdi-2.0.2/emdi/R/step.R | 117 +- emdi-2.0.2/emdi/R/summary.direct.R |only emdi-2.0.2/emdi/R/summary.ebp.R |only emdi-2.0.2/emdi/R/summary.emdi.R | 348 ------ emdi-2.0.2/emdi/R/summary.fh.R |only emdi-2.0.2/emdi/R/variable_selection.R | 5 emdi-2.0.2/emdi/R/write.excel.emdi.R | 12 emdi-2.0.2/emdi/R/write.ods.emdi.R | 4 emdi-2.0.2/emdi/README.md |only emdi-2.0.2/emdi/build/partial.rdb |only emdi-2.0.2/emdi/inst/doc/vignette_fh.pdf |binary emdi-2.0.2/emdi/inst/shapes/shape_austria_dis.rda |binary emdi-2.0.2/emdi/man/benchmark.Rd | 4 emdi-2.0.2/emdi/man/combine_data.Rd | 4 emdi-2.0.2/emdi/man/compare.Rd | 27 emdi-2.0.2/emdi/man/compare_plot.Rd | 179 ++- emdi-2.0.2/emdi/man/compare_pred.Rd |only emdi-2.0.2/emdi/man/direct.Rd | 16 emdi-2.0.2/emdi/man/ebp.Rd | 32 emdi-2.0.2/emdi/man/emdi.Rd | 24 emdi-2.0.2/emdi/man/emdiObject.Rd | 62 - emdi-2.0.2/emdi/man/emdi_summaries.Rd |only emdi-2.0.2/emdi/man/estimators.Rd | 74 + emdi-2.0.2/emdi/man/eusilcA_prox.Rd | 3 emdi-2.0.2/emdi/man/fh.Rd | 74 - emdi-2.0.2/emdi/man/fixef.Rd |only emdi-2.0.2/emdi/man/getData.Rd |only emdi-2.0.2/emdi/man/getGroups.Rd |only emdi-2.0.2/emdi/man/getGroupsFormula.Rd |only emdi-2.0.2/emdi/man/getResponse.Rd |only emdi-2.0.2/emdi/man/getVarCov.Rd |only emdi-2.0.2/emdi/man/intervals.Rd |only emdi-2.0.2/emdi/man/map_plot.Rd | 2 emdi-2.0.2/emdi/man/plot.emdi.Rd | 33 emdi-2.0.2/emdi/man/predict.emdi.Rd |only emdi-2.0.2/emdi/man/qqnorm.emdi.Rd |only emdi-2.0.2/emdi/man/ranef.Rd |only emdi-2.0.2/emdi/man/spatialcor.tests.Rd | 3 emdi-2.0.2/emdi/man/step.Rd | 78 + emdi-2.0.2/emdi/man/write.excel.Rd | 4 emdi-2.0.2/emdi/tests/testthat/Direct/direct_summary.RData |only emdi-2.0.2/emdi/tests/testthat/EBP/ebp_summary.RData |only emdi-2.0.2/emdi/tests/testthat/FH/AMPL_YL_modelfit.csv | 111 -- emdi-2.0.2/emdi/tests/testthat/FH/AMPL_modelfit.csv | 111 -- emdi-2.0.2/emdi/tests/testthat/FH/AMRL_YL_modelfit.csv | 111 -- emdi-2.0.2/emdi/tests/testthat/FH/AMRL_modelfit.csv | 111 -- emdi-2.0.2/emdi/tests/testthat/FH/ML_modelfit.csv | 111 -- emdi-2.0.2/emdi/tests/testthat/FH/REML_modelfit.csv | 111 -- emdi-2.0.2/emdi/tests/testthat/FH/eusilcA_popAgg.RData |binary emdi-2.0.2/emdi/tests/testthat/FH/eusilcA_smpAgg.RData |binary emdi-2.0.2/emdi/tests/testthat/FH/fh_ml_sae.csv | 58 - emdi-2.0.2/emdi/tests/testthat/FH/fh_reml_sae.csv | 58 - emdi-2.0.2/emdi/tests/testthat/FH/fh_robust_boot_saeRobust.csv | 289 ----- emdi-2.0.2/emdi/tests/testthat/FH/fh_robust_saeRobust.csv | 289 ----- emdi-2.0.2/emdi/tests/testthat/FH/fh_robust_spatial_bc_boot_saeRobust.csv | 289 ----- emdi-2.0.2/emdi/tests/testthat/FH/fh_robust_spatial_boot_saeRobust.csv | 289 ----- emdi-2.0.2/emdi/tests/testthat/FH/fh_robust_spatial_saeRobust.csv | 289 ----- emdi-2.0.2/emdi/tests/testthat/FH/fh_robustbc_boot_saeRobust.csv | 289 ----- emdi-2.0.2/emdi/tests/testthat/FH/fh_robustbc_saeRobust.csv | 289 ----- emdi-2.0.2/emdi/tests/testthat/FH/fh_robustbc_spatial_saeRobust.csv | 289 ----- emdi-2.0.2/emdi/tests/testthat/FH/fh_spatial_ml_analytical_sae.csv | 289 ----- emdi-2.0.2/emdi/tests/testthat/FH/fh_spatial_ml_pb_sae.csv | 289 ----- emdi-2.0.2/emdi/tests/testthat/FH/fh_spatial_reml_analytical_sae.csv | 289 ----- emdi-2.0.2/emdi/tests/testthat/FH/fh_spatial_reml_npb_sae.csv | 291 ----- emdi-2.0.2/emdi/tests/testthat/FH/fh_spatial_reml_pb_sae.csv | 289 ----- emdi-2.0.2/emdi/tests/testthat/FH/fh_summary.RData |only emdi-2.0.2/emdi/tests/testthat/FH/grapes.RData |binary emdi-2.0.2/emdi/tests/testthat/FH/grapesprox.RData |binary emdi-2.0.2/emdi/tests/testthat/FH/milk.RData |binary emdi-2.0.2/emdi/tests/testthat/FH/transf_arcsin_naive.csv | 111 -- emdi-2.0.2/emdi/tests/testthat/FH/transf_arcsin_sm.csv | 111 -- emdi-2.0.2/emdi/tests/testthat/FH/transf_log_crude.csv | 111 -- emdi-2.0.2/emdi/tests/testthat/FH/transf_log_sm.csv | 111 -- emdi-2.0.2/emdi/tests/testthat/test_S3_methods.R |only emdi-2.0.2/emdi/tests/testthat/test_fh_std_spatial_robust.R | 94 - emdi-2.0.2/emdi/tests/testthat/test_fh_transformation.R | 24 emdi-2.0.2/emdi/tests/testthat/test_fh_variance.R | 12 126 files changed, 2064 insertions(+), 6340 deletions(-)
Title: Wrap R Tools for Debugging and Parametric Programming
Description: Tools for writing and debugging R code. Provides:
'%.>%' dot-pipe (an 'S3' configurable pipe), unpack/to (R style multiple assignment/return),
'build_frame()'/'draw_frame()' ('data.frame' example tools),
'qc()' (quoting concatenate),
':=' (named map builder), 'let()' (converts non-standard evaluation interfaces to parametric standard
evaluation interfaces, inspired by 'gtools::strmacro()' and 'base::bquote()'), and more.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between wrapr versions 2.0.6 dated 2020-12-06 and 2.0.7 dated 2021-02-03
DESCRIPTION | 8 - MD5 | 45 +++---- NAMESPACE | 1 NEWS.md | 5 R/bc.R |only R/string_interpolation.R | 10 - README.md | 192 +++++++++++++------------------ inst/doc/CornerCases.html | 4 inst/doc/DebugFnW.html | 6 inst/doc/FrameTools.html | 4 inst/doc/Named_Arguments.html | 4 inst/doc/QuotingConcatinate.html | 4 inst/doc/SubstitutionModes.html | 4 inst/doc/bquote.html | 4 inst/doc/dot_pipe.html | 4 inst/doc/lambda.html | 4 inst/doc/let.html | 4 inst/doc/multi_assign.html | 4 inst/doc/named_map_builder.html | 4 inst/doc/unpack_multiple_assignment.html | 4 inst/doc/wrapr_Eager.html | 4 inst/doc/wrapr_applicable.html | 4 inst/tinytest/test_bc.R |only man/bc.Rd |only man/strsplit_capture.Rd | 8 - 25 files changed, 158 insertions(+), 173 deletions(-)
Title: Automated Method for Verbal Autopsy
Description: Implements multiple existing open-source algorithms for coding cause of death from verbal autopsies. The methods implemented include 'InterVA4' by Byass et al (2012) <doi:10.3402/gha.v5i0.19281>, 'InterVA5' by Byass at al (2019) <doi:10.1186/s12916-019-1333-6>, 'InSilicoVA' by McCormick et al (2016) <doi:10.1080/01621459.2016.1152191>, 'NBC' by Miasnikof et al (2015) <doi:10.1186/s12916-015-0521-2>, and a replication of 'Tariff' method by James et al (2011) <doi:10.1186/1478-7954-9-31> and Serina, et al. (2015) <doi:10.1186/s12916-015-0527-9>. It also provides tools for data manipulation tasks commonly used in Verbal Autopsy analysis and implements easy graphical visualization of individual and population level statistics. The 'NBC' method is implemented by the 'nbc4va' package that can be installed from <https://github.com/rrwen/nbc4va>. Note that this package was not developed by authors affiliated with the Institute for Health Metrics and Evaluation and thus unintentional discrepancies may exist in the implementation of the 'Tariff' method.
Author: Zehang Richard Li, Tyler McCormick, Sam Clark
Maintainer: Zehang Richard Li <lizehang@gmail.com>
Diff between openVA versions 1.0.11 dated 2020-05-04 and 1.0.12 dated 2021-02-03
DESCRIPTION | 10 +++++----- MD5 | 24 ++++++++++++------------ NEWS.md | 5 +++++ R/ConvertData.r | 17 +++++++++++------ R/VAmain.r | 2 +- R/interVA.train.r | 2 +- R/stackplot.r | 24 +++++++++++++++++++----- R/update.R | 1 + man/ConvertData.Rd | 12 ++++++++++-- man/ConvertData.phmrc.Rd | 13 +++++++++---- man/codeVA.Rd | 25 +++++++++++++++++-------- man/interVA.train.Rd | 15 +++++++++++---- man/stackplotVA.Rd | 27 +++++++++++++++++++++------ 13 files changed, 123 insertions(+), 54 deletions(-)
Title: Path Diagrams for Lavaan Models via DiagrammeR
Description: Plots path diagrams from models in lavaan using the plotting
functionality from the DiagrammeR package. DiagrammeR provides nice path diagrams
via Graphviz, and these functions make it easy to generate these diagrams from a
lavaan path model without having to write the DOT language graph specification.
Author: Alex Lishinski
Maintainer: Alex Lishinski <alexlishinski@gmail.com>
Diff between lavaanPlot versions 0.5.1 dated 2018-04-25 and 0.6.0 dated 2021-02-03
DESCRIPTION | 12 MD5 | 38 NAMESPACE | 3 NEWS.md | 11 R/lavaanPlot.R | 26 R/plotExportFunctions.R |only build/vignette.rds |binary inst/doc/Intro_to_lavaanPlot.R | 42 inst/doc/Intro_to_lavaanPlot.Rmd | 42 inst/doc/Intro_to_lavaanPlot.html | 1778 ++++++++++++++++++++++++++++++++++---- inst/doc/Save_and_embed.R |only inst/doc/Save_and_embed.Rmd |only inst/doc/Save_and_embed.html |only man/buildCall.Rd | 12 man/buildLabels.Rd | 1 man/buildPaths.Rd | 14 man/embed_plot_pdf.Rd |only man/getNodes.Rd | 1 man/lavaanPlot.Rd | 1 man/save_png.Rd |only man/sig_stars.Rd | 1 vignettes/Intro_to_lavaanPlot.Rmd | 42 vignettes/Save_and_embed.Rmd |only vignettes/plot2.pdf |only 24 files changed, 1798 insertions(+), 226 deletions(-)
Title: Utilities to Extract and Analyse Text Data from the Emergency
Nutrition Network Forum
Description: The Emergency Nutrition Network or en-net forum is the go to online
forum for field practitioners requiring prompt technical advice for
operational challenges for which answers are not readily accessible in
current guidelines. The questions and the corresponding answers raised
within en-net can provide insight into what the key topics of discussion are
within the nutrition sector. This package provides utility functions for the
extraction, processing and analysis of text data from the online forum.
Author: Ernest Guevarra [aut, cre] (<https://orcid.org/0000-0002-4887-4415>)
Maintainer: Ernest Guevarra <ernest@guevarra.io>
Diff between ennet versions 0.2.0 dated 2021-01-21 and 0.2.1 dated 2021-02-03
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 13 +++++++++++++ README.md | 2 +- inst/doc/analytics.html | 10 +++++----- inst/doc/extract.html | 40 ++++++++++++++++++++-------------------- tests/testthat/test-database.R | 2 +- 7 files changed, 49 insertions(+), 36 deletions(-)
Title: Reads Fixed-Width ASCII Data Files (.txt or .dat) that Have
Accompanying Setup Files (.sps or .sas)
Description: Lets you open a fixed-width ASCII file (.txt or
.dat) that has an accompanying setup file (.sps or .sas). These file
combinations are sometimes referred to as .txt+.sps, .txt+.sas,
.dat+.sps, or .dat+.sas. This will only run in a txt-sps or txt-sas
pair in which the setup file contains instructions to open that text
file. It will NOT open other text files, .sav, .sas, or .por data
files. Fixed-width ASCII files with setup files are common in older
(pre-2000) government data.
Author: Jacob Kaplan [aut, cre] (<https://orcid.org/0000-0002-0601-0387>)
Maintainer: Jacob Kaplan <jkkaplan6@gmail.com>
Diff between asciiSetupReader versions 2.3.2 dated 2020-11-28 and 2.4.0 dated 2021-02-03
DESCRIPTION | 6 MD5 | 107 NEWS.md | 6 R/parse_setup.R | 42 R/utils.R | 14 README.md | 13 build/vignette.rds |binary inst/doc/Introduction_to_asciiSetupReader.html | 335 - inst/doc/making-an-sps-file.html | 327 - inst/doc/parsing-an-sps-or-sas-file.html | 407 -- inst/extdata/example_setup.sas | 854 ++-- inst/extdata/example_setup.sps | 2674 +++++++------- inst/testdata/UN_crime.sas | 1064 ++--- inst/testdata/UN_crime.sps | 942 ++-- inst/testdata/ca_vital.sas | 1052 ++--- inst/testdata/census_of_police.sas | 844 ++-- inst/testdata/census_of_police.sps | 746 +-- inst/testdata/china_1995.sas | 686 +-- inst/testdata/china_1995.sps | 604 +-- inst/testdata/china_1998.sas | 656 +-- inst/testdata/china_1998.sps | 576 +-- inst/testdata/china_2002.sas | 1152 +++--- inst/testdata/china_2002.sps | 1254 +++--- inst/testdata/corrections_prison_admissions_1991_2016.sas | 318 - inst/testdata/county_arrest.sas | 186 inst/testdata/county_arrest.sps | 186 inst/testdata/crosswalk.sas | 724 +-- inst/testdata/crosswalk.sps | 682 +-- inst/testdata/crosswalk2012.sps | 660 +-- inst/testdata/education_1985.sas | 86 inst/testdata/education_1995.sas | 328 - inst/testdata/health_and_nutrition.sas | 492 +- inst/testdata/indonesia.sas | 122 inst/testdata/indonesia.sps | 114 inst/testdata/jail_survey_1987.sas | 852 ++-- inst/testdata/jail_survey_2010.sas | 1238 +++--- inst/testdata/monitoring_the_future_2012_sps.zip |only inst/testdata/parole_survey.sas | 640 +-- inst/testdata/parole_survey.sps | 558 +- inst/testdata/parole_survey.txt | 104 inst/testdata/psid_supplement.sas | 202 - inst/testdata/psid_supplement.sps | 204 - inst/testdata/sacramento.txt | 496 +- inst/testdata/sex_offender_notification.sas | 748 +-- inst/testdata/sex_offender_notification.sps | 652 +-- inst/testdata/sex_offender_notification.txt | 1408 +++---- inst/testdata/step_in.sas | 244 - inst/testdata/step_in.sps | 202 - inst/testdata/study_of_adolescent_health.sps | 184 inst/testdata/weimar.txt | 72 man/make_sps_setup.Rd | 132 man/parse_setup.Rd | 80 man/read_ascii_setup.Rd | 144 man/sas_ascii_reader.Rd | 162 man/spss_ascii_reader.Rd | 170 55 files changed, 12986 insertions(+), 13765 deletions(-)
More information about asciiSetupReader at CRAN
Permanent link
Title: Analyze Cricket Performances Based on Data from Cricsheet
Description: Analyzing performances of cricketers and cricket teams
based on 'yaml' match data from Cricsheet <https://cricsheet.org/>.
Author: Tinniam V Ganesh
Maintainer: Tinniam V Ganesh <tvganesh.85@gmail.com>
Diff between yorkr versions 0.0.18 dated 2021-01-29 and 0.0.19 dated 2021-02-03
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- R/batsmanRunsAgainstOpposition.R | 3 ++- R/bowlerWicketsAgainstOppn.R | 3 ++- R/bowlerWktsPredict.R | 1 + R/getAllMatchesAllOpposition.R | 7 +++++-- R/getAllMatchesBetweenTeams.R | 7 +++++-- R/getDeliveryWickets.R | 26 ++++++++++++++------------ R/getTeamBattingDetails.R | 24 +++++++++++++----------- R/getTeamBowlingDetails.R | 24 +++++++++++++----------- R/teamBowlingWicketRunsMatch.R | 6 +++++- 11 files changed, 74 insertions(+), 55 deletions(-)
Title: Get Swiss Federal and Cantonal Vote Results from Opendata.swiss
Description: Builds upon the real time data service as well as the archive for national votes <https://opendata.swiss/api/3/action/package_show?id=echtzeitdaten-am-abstimmungstag-zu-eidgenoessischen-abstimmungsvorlagen> and cantonal votes <https://opendata.swiss/api/3/action/package_show?id=echtzeitdaten-am-abstimmungstag-zu-kantonalen-abstimmungsvorlagen>. It brings the results of Swiss popular votes, aggregated at the geographical level of choice, into R. Additionally, it allows to retrieve data from the Swissvotes-Database, one of the most comprehensive data platforms on Swiss referendums and initiatives <https://swissvotes.ch/page/dataset/swissvotes_dataset.csv>.
Author: Thomas Lo Russo [cre, aut],
Thomas Willi [aut]
Maintainer: Thomas Lo Russo <th.lorusso@gmail.com>
Diff between swissdd versions 1.0.4 dated 2020-10-25 and 1.1.0 dated 2021-02-03
swissdd-1.0.4/swissdd/R/get_results.R |only swissdd-1.0.4/swissdd/R/json_to_dfr.R |only swissdd-1.0.4/swissdd/R/votedates.R |only swissdd-1.1.0/swissdd/DESCRIPTION | 13 ++++--- swissdd-1.1.0/swissdd/MD5 | 40 ++++++++++++++--------- swissdd-1.1.0/swissdd/NAMESPACE | 27 +++++++++++++++ swissdd-1.1.0/swissdd/R/available_votedates.R |only swissdd-1.1.0/swissdd/R/canton_json_to_dfr.R |only swissdd-1.1.0/swissdd/R/get_cantonalvotes.R |only swissdd-1.1.0/swissdd/R/get_geodata.R |only swissdd-1.1.0/swissdd/R/get_nationalvotes.R |only swissdd-1.1.0/swissdd/R/get_swissvotes.R | 34 +++++++++---------- swissdd-1.1.0/swissdd/R/mkeys-data.R |only swissdd-1.1.0/swissdd/R/plot_cantonalvotes.R |only swissdd-1.1.0/swissdd/R/plot_nationalvotes.R |only swissdd-1.1.0/swissdd/R/swiss_json_to_dfr.R |only swissdd-1.1.0/swissdd/R/utils.R |only swissdd-1.1.0/swissdd/R/zzz.R | 8 +++- swissdd-1.1.0/swissdd/data |only swissdd-1.1.0/swissdd/man/available_votedates.Rd | 12 +++--- swissdd-1.1.0/swissdd/man/canton_json_to_dfr.Rd | 25 ++++++++------ swissdd-1.1.0/swissdd/man/get_cantonalvotes.Rd | 40 ++++++++++++----------- swissdd-1.1.0/swissdd/man/get_geodata.Rd |only swissdd-1.1.0/swissdd/man/get_nationalvotes.Rd | 40 ++++++++++++++--------- swissdd-1.1.0/swissdd/man/get_swissvotes.Rd | 4 -- swissdd-1.1.0/swissdd/man/mkeys.Rd |only swissdd-1.1.0/swissdd/man/plot_cantonalvotes.Rd |only swissdd-1.1.0/swissdd/man/plot_nationalvotes.Rd |only swissdd-1.1.0/swissdd/man/similar_votes.Rd | 9 ++++- swissdd-1.1.0/swissdd/man/swiss_json_to_dfr.Rd | 31 ++++++++++------- 30 files changed, 178 insertions(+), 105 deletions(-)
Title: 'Rcpp' Bindings for the 'Corpus Workbench' ('CWB')
Description: 'Rcpp' Bindings for the C code of the 'Corpus Workbench' ('CWB'), an indexing and query
engine to efficiently analyze large corpora (<http://cwb.sourceforge.net>). 'RcppCWB' is licensed
under the GNU GPL-3, in line with the GPL-3 license of the 'CWB' (<https://www.r-project.org/Licenses/GPL-3>).
The 'CWB' relies on 'pcre' (BSD license, see <http://www.pcre.org/licence.txt>)
and 'GLib' (LGPL license, see <https://www.gnu.org/licenses/lgpl-3.0.en.html>).
See the file LICENSE.note for further information. The package includes modified code of the
'rcqp' package (GPL-2, see <https://cran.r-project.org/package=rcqp>). The original work of the authors
of the 'rcqp' package is acknowledged with great respect, and they are listed as authors of this
package. To achieve cross-platform portability (including Windows), using 'Rcpp' for wrapper code
is the approach used by 'RcppCWB'.
Author: Andreas Blaette [aut, cre],
Bernard Desgraupes [aut],
Sylvain Loiseau [aut],
Oliver Christ [ctb],
Bruno Maximilian Schulze [ctb],
Stefan Evert [ctb],
Arne Fitschen [ctb],
Jeroen Ooms [ctb],
Marius Bertram [ctb]
Maintainer: Andreas Blaette <andreas.blaette@uni-due.de>
Diff between RcppCWB versions 0.3.1 dated 2021-02-03 and 0.3.2 dated 2021-02-03
DESCRIPTION | 6 +++--- MD5 | 4 ++-- configure | 14 ++++++++------ 3 files changed, 13 insertions(+), 11 deletions(-)
Title: Interface to 'Interpretable AI' Modules
Description: An interface to the algorithms of 'Interpretable AI'
<https://www.interpretable.ai> from the R programming language.
'Interpretable AI' provides various modules, including 'Optimal Trees' for
classification, regression, prescription and survival analysis, 'Optimal
Imputation' for missing data imputation and outlier detection, and 'Optimal
Feature Selection' for exact sparse regression. The 'iai' package is an
open-source project. The 'Interpretable AI' software modules are proprietary
products, but free academic and evaluation licenses are available.
Author: Jack Dunn [aut, cre],
Ying Zhuo [aut],
Interpretable AI LLC [cph]
Maintainer: Jack Dunn <jack@interpretable.ai>
Diff between iai versions 1.4.0 dated 2020-12-09 and 1.5.0 dated 2021-02-03
DESCRIPTION | 8 +- MD5 | 39 +++++++------ NAMESPACE | 4 + NEWS.md | 6 ++ R/heuristics.R | 14 ---- R/iaibase.R | 118 ++++++++++++++++++----------------------- R/iaitrees.R | 92 ------------------------------- R/install.R |only R/interface.R | 45 +++++++++++---- R/optimalfeatureselection.R | 8 -- R/optimaltrees.R | 16 ----- R/optimpute.R | 18 ------ R/rewardestimation.R | 15 ----- R/utils.R | 4 - inst/julia/convert.jl | 35 ++++++------ man/get_grid_result_details.Rd |only man/get_grid_result_summary.Rd |only man/get_grid_results.Rd | 4 - man/iai_setup.Rd | 5 + man/install_julia.Rd |only man/install_system_image.Rd |only tests/testthat/test_iaibase.R | 21 ++++++- tests/testthat/test_iaitrees.R | 88 +++++++++++++++++++++++++----- 23 files changed, 242 insertions(+), 298 deletions(-)
Title: A Comprehensive Set of Functions to Clean, Analyze, and Present
Crime Data
Description: A collection of functions that make it easier to understand crime (or other)
data, and assist others in understanding it. The package helps you read data
from various sources, clean it, fix column names, and graph the data.
Author: Jacob Kaplan [aut, cre] (<https://orcid.org/0000-0002-0601-0387>)
Maintainer: Jacob Kaplan <jkkaplan6@gmail.com>
Diff between crimeutils versions 0.2.0 dated 2020-10-30 and 0.3.0 dated 2021-02-03
DESCRIPTION | 10 +- MD5 | 35 ++++---- NAMESPACE | 4 + NEWS.md | 23 +++++ R/cleaning_utils.R | 16 +--- R/graph_theme.R | 6 - R/graphs.R | 103 +++++++++++++++++++++++-- R/latex.R | 7 + R/outliers.R | 2 R/stats.R | 3 R/tables.R | 127 ++++++++++++++++++++++++++++++-- R/ucr_constant_reporters.R | 4 - README.md | 2 man/indicate_outliers.Rd | 4 + man/make_average_graph.Rd |only man/make_latex_tables.Rd | 6 + man/make_mean_std_dev_by_group_table.Rd |only man/make_n_and_percent_table.Rd |only man/scatterplot_data_graph.Rd | 6 + tests/testthat/test-cleaning-utils.R | 9 ++ 20 files changed, 311 insertions(+), 56 deletions(-)
Title: Hierarchical Models for Parametric and Semi-Parametric Analyses
of Semi-Competing Risks Data
Description: Hierarchical multistate models are considered to perform the analysis of independent/clustered semi-competing risks data. The package allows to choose the specification for model components from a range of options giving users substantial flexibility, including: accelerated failure time or proportional hazards regression models; parametric or non-parametric specifications for baseline survival functions and cluster-specific random effects distribution; a Markov or semi-Markov specification for terminal event following non-terminal event. While estimation is mainly performed within the Bayesian paradigm, the package also provides the maximum likelihood estimation approach for several parametric models. The package also includes functions for univariate survival analysis as complementary analysis tools.
Author: Kyu Ha Lee, Catherine Lee, Danilo Alvares, and Sebastien Haneuse
Maintainer: Kyu Ha Lee <klee15239@gmail.com>
Diff between SemiCompRisks versions 3.3 dated 2019-01-28 and 3.4 dated 2021-02-03
SemiCompRisks-3.3/SemiCompRisks/R/SemiCompRisks-internal.R |only SemiCompRisks-3.4/SemiCompRisks/DESCRIPTION | 8 +- SemiCompRisks-3.4/SemiCompRisks/MD5 | 27 ++++------ SemiCompRisks-3.4/SemiCompRisks/R/methods.R | 5 + SemiCompRisks-3.4/SemiCompRisks/build/vignette.rds |binary SemiCompRisks-3.4/SemiCompRisks/inst/doc/SemiCompRisks.pdf |binary SemiCompRisks-3.4/SemiCompRisks/man/BayesID_AFT.Rd | 4 - SemiCompRisks-3.4/SemiCompRisks/man/BayesID_HReg.Rd | 4 - SemiCompRisks-3.4/SemiCompRisks/man/BayesSurv_AFT.Rd | 4 - SemiCompRisks-3.4/SemiCompRisks/man/BayesSurv_HReg.Rd | 4 - SemiCompRisks-3.4/SemiCompRisks/man/FreqID_HReg.Rd | 4 - SemiCompRisks-3.4/SemiCompRisks/man/FreqSurv_HReg.Rd | 4 - SemiCompRisks-3.4/SemiCompRisks/man/SemiCompRisks-package.Rd | 8 +- SemiCompRisks-3.4/SemiCompRisks/man/initiate.startValues_AFT.Rd | 4 - SemiCompRisks-3.4/SemiCompRisks/man/initiate.startValues_HReg.Rd | 4 - 15 files changed, 40 insertions(+), 40 deletions(-)
Title: Matrix Correlation Coefficients
Description: Computation and visualization of matrix correlation coefficients.
The main method is the Similarity of Matrices Index, while various related
measures like r1, r2, r3, r4, Yanai's GCD, RV, RV2, adjusted RV, Rozeboom's
linear correlation and Coxhead's coefficient are included
for comparison and flexibility.
Author: Kristian Hovde Liland
Maintainer: Kristian Hovde Liland <kristian.liland@nmbu.no>
Diff between MatrixCorrelation versions 0.9.4 dated 2020-08-03 and 0.9.5 dated 2021-02-03
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS | 4 ++++ src/significantRcpp.cpp | 5 +++-- src/significantRepRcpp.cpp | 8 +++++--- 5 files changed, 21 insertions(+), 14 deletions(-)
More information about MatrixCorrelation at CRAN
Permanent link
Title: Perform Factorial Analysis from 'FactoMineR' with a Shiny
Application
Description: Perform factorial analysis with a menu and draw graphs interactively thanks to 'FactoMineR' and a Shiny application.
Author: Pauline Vaissie, Astrid Monge, Francois Husson
Maintainer: Francois Husson <husson@agrocampus-ouest.fr>
Diff between Factoshiny versions 2.3 dated 2020-12-11 and 2.4 dated 2021-02-03
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- inst/FactoCAapp2/global.R | 4 ++-- inst/FactoFAMDapp2/global.R | 12 ++++++------ inst/FactoMCAapp2/global.R | 6 +++--- inst/FactoMFAapp/global.R | 2 +- inst/FactoMFAapp2/global.R | 2 +- inst/FactoPCAapp2/global.R | 8 ++++---- inst/FactoPCAapp2/ui.R | 2 -- inst/doc/Factoshiny.pdf |binary 10 files changed, 30 insertions(+), 32 deletions(-)
Title: 'Rcpp' Bindings for the 'Corpus Workbench' ('CWB')
Description: 'Rcpp' Bindings for the C code of the 'Corpus Workbench' ('CWB'), an indexing and query
engine to efficiently analyze large corpora (<http://cwb.sourceforge.net>). 'RcppCWB' is licensed
under the GNU GPL-3, in line with the GPL-3 license of the 'CWB' (<https://www.r-project.org/Licenses/GPL-3>).
The 'CWB' relies on 'pcre' (BSD license, see <http://www.pcre.org/licence.txt>)
and 'GLib' (LGPL license, see <https://www.gnu.org/licenses/lgpl-3.0.en.html>).
See the file LICENSE.note for further information. The package includes modified code of the
'rcqp' package (GPL-2, see <https://cran.r-project.org/package=rcqp>). The original work of the authors
of the 'rcqp' package is acknowledged with great respect, and they are listed as authors of this
package. To achieve cross-platform portability (including Windows), using 'Rcpp' for wrapper code
is the approach used by 'RcppCWB'.
Author: Andreas Blaette [aut, cre],
Bernard Desgraupes [aut],
Sylvain Loiseau [aut],
Oliver Christ [ctb],
Bruno Maximilian Schulze [ctb],
Stefan Evert [ctb],
Arne Fitschen [ctb],
Jeroen Ooms [ctb],
Marius Bertram [ctb]
Maintainer: Andreas Blaette <andreas.blaette@uni-due.de>
Diff between RcppCWB versions 0.3.0 dated 2020-07-08 and 0.3.1 dated 2021-02-03
DESCRIPTION | 16 +++++++------ MD5 | 9 ++++--- NEWS.md | 6 +++++ configure | 41 ++++++++++++++++++++++++++++++----- src/cwb/config/platform/darwin-arm64 |only tools/maclibs.R | 21 +++++++++++++++++ 6 files changed, 77 insertions(+), 16 deletions(-)
Title: Resampling-Based Analysis of Multivariate Data and Repeated
Measures Designs
Description: Implemented are various tests for semi-parametric repeated measures
and general MANOVA designs that do neither assume multivariate normality nor
covariance homogeneity, i.e., the procedures are applicable for a wide range
of general multivariate factorial designs. In addition to asymptotic inference
methods, novel bootstrap and permutation approaches are implemented as well. These provide more
accurate results in case of small to moderate sample sizes. Furthermore, post-hoc
comparisons are provided for the multivariate analyses.
Friedrich, S., Konietschke, F. and Pauly, M. (2018) <arXiv:1801.08002>.
Author: Sarah Friedrich, Frank Konietschke, Markus Pauly
Maintainer: Sarah Friedrich <sarah.friedrich@med.uni-goettingen.de>
Diff between MANOVA.RM versions 0.4.2 dated 2020-10-13 and 0.4.3 dated 2021-02-03
DESCRIPTION | 8 ++--- MD5 | 28 +++++++++++------- R/MANOVA_simCI.R | 6 +++ R/RM-function.R | 22 ++++---------- R/multRM-function.R | 28 +++++++++++++----- data/o2cons.rda |binary inst/NEWS.md | 6 +++ inst/doc/Introduction_to_MANOVA.RM.R | 8 +++-- inst/doc/Introduction_to_MANOVA.RM.Rmd | 14 +++++++-- inst/doc/Introduction_to_MANOVA.RM.html | 49 +++++++++++++++++--------------- man/multRM.Rd | 3 + tests |only vignettes/Introduction_to_MANOVA.RM.Rmd | 14 +++++++-- 13 files changed, 116 insertions(+), 70 deletions(-)
Title: Bindings for the 'Geospatial' Data Abstraction Library
Description: Provides bindings to the 'Geospatial' Data Abstraction Library ('GDAL') (>= 1.11.4) and access to projection/transformation operations from the 'PROJ' library. Use is made of classes defined in the 'sp' package. Raster and vector map data can be imported into R, and raster and vector 'sp' objects exported. The 'GDAL' and 'PROJ' libraries are external to the package, and, when installing the package from source, must be correctly installed first; it is important that 'GDAL' < 3 be matched with 'PROJ' < 6. From 'rgdal' 1.5-8, installed with to 'GDAL' >=3, 'PROJ' >=6 and 'sp' >= 1.4, coordinate reference systems use 'WKT2_2019' strings, not 'PROJ' strings. 'Windows' and 'macOS' binaries (including 'GDAL', 'PROJ' and their dependencies) are provided on 'CRAN'.
Author: Roger Bivand [cre, aut] (<https://orcid.org/0000-0003-2392-6140>),
Tim Keitt [aut],
Barry Rowlingson [aut, ctb],
Edzer Pebesma [ctb],
Michael Sumner [ctb],
Robert Hijmans [ctb],
Daniel Baston [ctb],
Even Rouault [cph, ctb],
Frank Warmerdam [cph, ctb],
Jeroen Ooms [ctb],
Colin Rundel [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between rgdal versions 1.5-22 dated 2021-02-02 and 1.5-23 dated 2021-02-03
ChangeLog | 10 ++++++++++ DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- NEWS.md | 6 +++++- configure | 18 +++++++++--------- inst/ChangeLog | 10 ++++++++++ inst/SVN_VERSION | 2 +- inst/doc/CRS_projections_transformations.html | 14 +++++++------- inst/doc/OGR_shape_encoding.pdf |binary inst/doc/PROJ6_GDAL3.html | 14 +++++++------- src/proj6.cpp | 3 +-- src/projectit.cpp | 3 +-- 12 files changed, 66 insertions(+), 44 deletions(-)
Title: Quality Report Generation for MaxQuant and mzTab Results
Description: Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the
MaxQuant software suite (from .txt files) or mzTab files (ideally from OpenMS 'QualityControl' tool).
Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format.
Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015)
<doi:10.1021/acs.jproteome.5b00780>.
Author: Chris Bielow [aut, cre],
Juliane Schmachtenberg [ctb],
Swenja Wagner [ctb],
Patricia Scheil [ctb],
Tom Waschischek [ctb],
Guido Mastrobuoni [dtc, rev]
Maintainer: Chris Bielow <chris.bielow@bsc.fu-berlin.de>
Diff between PTXQC versions 1.0.8 dated 2020-12-12 and 1.0.9 dated 2021-02-03
PTXQC-1.0.8/PTXQC/man/addGGtitle.Rd |only PTXQC-1.0.9/PTXQC/DESCRIPTION | 15 +- PTXQC-1.0.9/PTXQC/MD5 | 74 ++++++---- PTXQC-1.0.9/PTXQC/NAMESPACE | 22 ++ PTXQC-1.0.9/PTXQC/NEWS | 10 + PTXQC-1.0.9/PTXQC/R/FilenameMapper.R | 43 ++++- PTXQC-1.0.9/PTXQC/R/MzQC_classes.R |only PTXQC-1.0.9/PTXQC/R/createReport.R | 47 +++++- PTXQC-1.0.9/PTXQC/R/createYaml.R | 2 PTXQC-1.0.9/PTXQC/R/fcn_MQ.R | 8 - PTXQC-1.0.9/PTXQC/R/fcn_MQalign.R | 2 PTXQC-1.0.9/PTXQC/R/fcn_QCHeat.R | 6 PTXQC-1.0.9/PTXQC/R/fcn_misc.R | 38 ++--- PTXQC-1.0.9/PTXQC/R/fcn_miscGGplot.R | 28 --- PTXQC-1.0.9/PTXQC/R/fcn_mqpar.R | 2 PTXQC-1.0.9/PTXQC/R/fcn_plots.R | 28 ++- PTXQC-1.0.9/PTXQC/R/mzQC.R |only PTXQC-1.0.9/PTXQC/R/qcMetric.R | 2 PTXQC-1.0.9/PTXQC/R/qcMetric_EVD.R | 11 - PTXQC-1.0.9/PTXQC/R/qcMetric_PG.R | 2 PTXQC-1.0.9/PTXQC/README.md | 5 PTXQC-1.0.9/PTXQC/inst/doc/PTXQC-Basic_Guide_for_R_users.html | 4 PTXQC-1.0.9/PTXQC/inst/doc/PTXQC-CustomizeReport.html | 4 PTXQC-1.0.9/PTXQC/inst/doc/PTXQC-DragNDrop.html | 4 PTXQC-1.0.9/PTXQC/inst/doc/PTXQC-FAQ.html | 4 PTXQC-1.0.9/PTXQC/inst/doc/PTXQC-Input_And_Output_Data.html | 4 PTXQC-1.0.9/PTXQC/inst/doc/PTXQC-ListOfMetrics.html | 4 PTXQC-1.0.9/PTXQC/inst/dragNdrop/QC-dragdrop/_internal/compute_QC_report.R | 4 PTXQC-1.0.9/PTXQC/man/MzQCDateTime-class.Rd |only PTXQC-1.0.9/PTXQC/man/MzQCanalysisSoftware-class.Rd |only PTXQC-1.0.9/PTXQC/man/MzQCbaseQuality-class.Rd |only PTXQC-1.0.9/PTXQC/man/MzQCcontrolledVocabulary-class.Rd |only PTXQC-1.0.9/PTXQC/man/MzQCcvParameter-class.Rd |only PTXQC-1.0.9/PTXQC/man/MzQCinputFile-class.Rd |only PTXQC-1.0.9/PTXQC/man/MzQCmetadata-class.Rd |only PTXQC-1.0.9/PTXQC/man/MzQCmzQC-class.Rd |only PTXQC-1.0.9/PTXQC/man/MzQCqualityMetric-class.Rd |only PTXQC-1.0.9/PTXQC/man/NULL_to_NA.Rd |only PTXQC-1.0.9/PTXQC/man/NULL_to_charNA.Rd |only PTXQC-1.0.9/PTXQC/man/createReport.Rd | 8 - PTXQC-1.0.9/PTXQC/man/fromDatatoMzQC.Rd |only PTXQC-1.0.9/PTXQC/man/getReportFilenames.Rd | 18 +- PTXQC-1.0.9/PTXQC/man/isUndefined.Rd |only PTXQC-1.0.9/PTXQC/man/isValidMzQC.Rd |only PTXQC-1.0.9/PTXQC/man/parseOBO.Rd |only PTXQC-1.0.9/PTXQC/man/plot_RatiosPG.Rd | 2 PTXQC-1.0.9/PTXQC/tests/testthat/test_computeQC.R | 4 47 files changed, 240 insertions(+), 165 deletions(-)
Title: Probabilistic Supervised Learning for 'mlr3'
Description: Provides extensions for probabilistic supervised
learning for 'mlr3'. This includes extending the regression task to
probabilistic and interval regression, adding a survival task, and
other specialized models, predictions, and measures. mlr3extralearners is available
from <https://github.com/mlr-org/mlr3extralearners>.
Author: Raphael Sonabend [aut, cre] (<https://orcid.org/0000-0001-9225-4654>),
Franz Kiraly [aut],
Michel Lang [aut] (<https://orcid.org/0000-0001-9754-0393>),
Nurul Ain Toha [ctb],
Andreas Bender [ctb] (<https://orcid.org/0000-0001-5628-8611>)
Maintainer: Raphael Sonabend <raphael.sonabend.15@ucl.ac.uk>
Diff between mlr3proba versions 0.3.0 dated 2021-02-02 and 0.3.1 dated 2021-02-03
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 10 +++++++--- R/TaskSurv.R | 38 +++++++++++++++++++++++++++++--------- build/partial.rdb |binary man/TaskSurv.Rd | 4 ++-- tests/testthat/test_TaskSurv.R | 21 +++++++++++++++++++-- 7 files changed, 66 insertions(+), 25 deletions(-)
Title: Test and Item Analysis via Shiny
Description: Package including functions and interactive shiny
application for the psychometric analysis of educational tests,
psychological assessments, health-related and other types of
multi-item measurements, or ratings from multiple raters.
Author: Patricia Martinkova [aut, cre],
Adela Hladka [aut],
Ondrej Leder [ctb],
Jakub Houdek [ctb],
Lubomir Stepanek [ctb],
Tomas Jurica [ctb],
Jana Vorlickova [ctb],
Jan Netik [ctb]
Maintainer: Patricia Martinkova <martinkova@cs.cas.cz>
Diff between ShinyItemAnalysis versions 1.3.4 dated 2020-08-24 and 1.3.5 dated 2021-02-03
DESCRIPTION | 73 MD5 | 207 NAMESPACE | 40 NEWS.md | 153 R/AIBS.R |only R/DDplot.R | 232 R/DistractorAnalysis.R | 141 R/HCI.R | 44 R/HCIdata.R |only R/HCIgrads.R |only R/HCIkey.R | 31 R/HCIprepost.R |only R/HCItest.R | 45 R/HCItestretest.R |only R/ICCrestricted.R |only R/ItemAnalysis.R | 495 - R/LearningToLearn.R | 65 R/NIH.R |only R/ShinyItemAnalysis-package.R | 154 R/dataMedical.R | 29 R/dataMedicalgraded.R | 36 R/dataMedicalkey.R | 19 R/dataMedicaltest.R | 34 R/difLord_edited.R | 44 R/gDisrim.R | 124 R/ggWrightMap.R | 75 R/moments.R |only R/plotAdjacent.R | 56 R/plotCumulative.R | 82 R/plotDIFLogistic.R | 7 R/plotDIFirt.R | 34 R/plotDistractorAnalysis.R | 152 R/plotMultinomial.R | 47 R/plot_corr.R |only R/recode_nr.R | 56 R/reexports.R |only R/startShinyItemAnalysis.R | 69 R/theme_app.R | 5 README.md | 12 build |only data/AIBS.rda |only data/HCI.rda |binary data/HCIdata.rda |only data/HCIgrads.rda |only data/HCIkey.rda |binary data/HCIprepost.rda |only data/HCItest.rda |binary data/HCItestretest.rda |only data/LearningToLearn.rda |binary data/NIH.rda |only data/dataMedical.rda |binary data/dataMedicalgraded.rda |binary data/dataMedicalkey.rda |binary data/dataMedicaltest.rda |binary inst/shiny-examples/ShinyItemAnalysis/hexbin_alpha.png |only inst/shiny-examples/ShinyItemAnalysis/reporthtml.Rmd | 35 inst/shiny-examples/ShinyItemAnalysis/reportpdf.Rmd | 37 inst/shiny-examples/ShinyItemAnalysis/server.R | 1069 +- inst/shiny-examples/ShinyItemAnalysis/server/DIF.R | 4434 ++++++---- inst/shiny-examples/ShinyItemAnalysis/server/Data.R | 608 - inst/shiny-examples/ShinyItemAnalysis/server/IRT.R | 4157 +++++---- inst/shiny-examples/ShinyItemAnalysis/server/Regression.R | 1851 ++-- inst/shiny-examples/ShinyItemAnalysis/server/Reliability.R | 517 - inst/shiny-examples/ShinyItemAnalysis/server/Summary.R | 318 inst/shiny-examples/ShinyItemAnalysis/server/TraditionalAnalysis.R | 696 - inst/shiny-examples/ShinyItemAnalysis/server/Validity.R | 506 - inst/shiny-examples/ShinyItemAnalysis/titlepage.sty | 2 inst/shiny-examples/ShinyItemAnalysis/ui.R | 301 inst/shiny-examples/ShinyItemAnalysis/ui/uiAbout.R | 295 inst/shiny-examples/ShinyItemAnalysis/ui/uiDIF.R | 3076 +++--- inst/shiny-examples/ShinyItemAnalysis/ui/uiDIF/uiTDIF.R | 637 - inst/shiny-examples/ShinyItemAnalysis/ui/uiData.R | 1019 +- inst/shiny-examples/ShinyItemAnalysis/ui/uiIRT.R | 2464 ++--- inst/shiny-examples/ShinyItemAnalysis/ui/uiIRT/uiDIRT.R | 888 +- inst/shiny-examples/ShinyItemAnalysis/ui/uiReferences.R | 366 inst/shiny-examples/ShinyItemAnalysis/ui/uiRegression.R | 711 - inst/shiny-examples/ShinyItemAnalysis/ui/uiReliability.R | 404 inst/shiny-examples/ShinyItemAnalysis/ui/uiReports.R | 715 - inst/shiny-examples/ShinyItemAnalysis/ui/uiSetting.R | 79 inst/shiny-examples/ShinyItemAnalysis/ui/uiSummary.R | 134 inst/shiny-examples/ShinyItemAnalysis/ui/uiTraditionalAnalysis.R | 305 inst/shiny-examples/ShinyItemAnalysis/ui/uiValidity.R | 500 - inst/shiny-examples/ShinyItemAnalysis/www/bootstrap.css | 4 inst/shiny-examples/ShinyItemAnalysis/www/fig_DDF_uniform.png |binary inst/shiny-examples/ShinyItemAnalysis/www/fig_DIF_nonuniform.png |binary inst/shiny-examples/ShinyItemAnalysis/www/fig_DIF_uniform.png |binary inst/shiny-examples/ShinyItemAnalysis/www/navbar_right.css |only inst/shiny-examples/ShinyItemAnalysis/www/tooltip.css |only man/AIBS.Rd |only man/DDplot.Rd | 197 man/DistractorAnalysis.Rd | 94 man/HCI.Rd | 37 man/HCIdata.Rd |only man/HCIgrads.Rd |only man/HCIkey.Rd | 26 man/HCIprepost.Rd |only man/HCItest.Rd | 38 man/HCItestretest.Rd |only man/ICCrestricted.Rd |only man/ItemAnalysis.Rd | 175 man/LearningToLearn.Rd | 62 man/NIH.Rd |only man/ShinyItemAnalysis-package.Rd | 120 man/dataMedical.Rd | 29 man/dataMedicalgraded.Rd | 34 man/dataMedicalkey.Rd | 19 man/dataMedicaltest.Rd | 34 man/gDiscrim.Rd | 73 man/ggWrightMap.Rd | 59 man/plotAdjacent.Rd | 25 man/plotCumulative.Rd | 30 man/plotDIFirt.Rd | 26 man/plotDistractorAnalysis.Rd | 108 man/plotMultinomial.Rd | 22 man/plot_corr.Rd |only man/recode_nr.Rd | 26 man/reexports.Rd |only man/startShinyItemAnalysis.Rd | 11 man/theme_app.Rd | 4 119 files changed, 17586 insertions(+), 12352 deletions(-)
More information about ShinyItemAnalysis at CRAN
Permanent link
Title: Tools for Descriptive Statistics
Description: A collection of miscellaneous basic statistic functions and convenience wrappers for efficiently describing data. The author's intention was to create a toolbox, which facilitates the (notoriously time consuming) first descriptive tasks in data analysis, consisting of calculating descriptive statistics, drawing graphical summaries and reporting the results. The package contains furthermore functions to produce documents using MS Word (or PowerPoint) and functions to import data from Excel. Many of the included functions can be found scattered in other packages and other sources written partly by Titans of R. The reason for collecting them here, was primarily to have them consolidated in ONE instead of dozens of packages (which themselves might depend on other packages which are not needed at all), and to provide a common and consistent interface as far as function and arguments naming, NA handling, recycling rules etc. are concerned. Google style guides were used as naming rules (in absence of convincing alternatives). The 'BigCamelCase' style was consequently applied to functions borrowed from contributed R packages as well.
Author: Andri Signorell [aut, cre],
Ken Aho [ctb],
Andreas Alfons [ctb],
Nanina Anderegg [ctb],
Tomas Aragon [ctb],
Chandima Arachchige [ctb],
Antti Arppe [ctb],
Adrian Baddeley [ctb],
Kamil Barton [ctb],
Ben Bolker [ctb],
Hans W. Borchers [ctb],
Frederico Caeiro [ctb],
Stephane Champely [ctb],
Daniel Chessel [ctb],
Leanne Chhay [ctb],
Nicholas Cooper [ctb],
Clint Cummins [ctb],
Michael Dewey [ctb],
Harold C. Doran [ctb],
Stephane Dray [ctb],
Charles Dupont [ctb],
Dirk Eddelbuettel [ctb],
Claus Ekstrom [ctb],
Martin Elff [ctb],
Jeff Enos [ctb],
Richard W. Farebrother [ctb],
John Fox [ctb],
Romain Francois [ctb],
Michael Friendly [ctb],
Tal Galili [ctb],
Matthias Gamer [ctb],
Joseph L. Gastwirth [ctb],
Vilmantas Gegzna [ctb],
Yulia R. Gel [ctb],
Sereina Graber [ctb],
Juergen Gross [ctb],
Gabor Grothendieck [ctb],
Frank E. Harrell Jr [ctb],
Richard Heiberger [ctb],
Michael Hoehle [ctb],
Christian W. Hoffmann [ctb],
Soeren Hojsgaard [ctb],
Torsten Hothorn [ctb],
Markus Huerzeler [ctb],
Wallace W. Hui [ctb],
Pete Hurd [ctb],
Rob J. Hyndman [ctb],
Christopher Jackson [ctb],
Matthias Kohl [ctb],
Mikko Korpela [ctb],
Max Kuhn [ctb],
Detlew Labes [ctb],
Friederich Leisch [ctb],
Jim Lemon [ctb],
Dong Li [ctb],
Martin Maechler [ctb],
Arni Magnusson [ctb],
Ben Mainwaring [ctb],
Daniel Malter [ctb],
George Marsaglia [ctb],
John Marsaglia [ctb],
Alina Matei [ctb],
David Meyer [ctb],
Weiwen Miao [ctb],
Giovanni Millo [ctb],
Yongyi Min [ctb],
David Mitchell [ctb],
Franziska Mueller [ctb],
Markus Naepflin [ctb],
Daniel Navarro [ctb],
Henric Nilsson [ctb],
Klaus Nordhausen [ctb],
Derek Ogle [ctb],
Hong Ooi [ctb],
Nick Parsons [ctb],
Sandrine Pavoine [ctb],
Tony Plate [ctb],
Luke Prendergast [ctb],
Roland Rapold [ctb],
William Revelle [ctb],
Tyler Rinker [ctb],
Brian D. Ripley [ctb],
Caroline Rodriguez [ctb],
Nathan Russell [ctb],
Nick Sabbe [ctb],
Ralph Scherer [ctb],
Venkatraman E. Seshan [ctb],
Michael Smithson [ctb],
Greg Snow [ctb],
Karline Soetaert [ctb],
Werner A. Stahel [ctb],
Alec Stephenson [ctb],
Mark Stevenson [ctb],
Ralf Stubner [ctb],
Matthias Templ [ctb],
Duncan Temple Lang [ctb],
Terry Therneau [ctb],
Yves Tille [ctb],
Luis Torgo [ctb],
Adrian Trapletti [ctb],
Joshua Ulrich [ctb],
Kevin Ushey [ctb],
Jeremy VanDerWal [ctb],
Bill Venables [ctb],
John Verzani [ctb],
Pablo J. Villacorta Iglesias [ctb],
Gregory R. Warnes [ctb],
Stefan Wellek [ctb],
Hadley Wickham [ctb],
Rand R. Wilcox [ctb],
Peter Wolf [ctb],
Daniel Wollschlaeger [ctb],
Joseph Wood [ctb],
Ying Wu [ctb],
Thomas Yee [ctb],
Achim Zeileis [ctb]
Maintainer: Andri Signorell <andri@signorell.net>
Diff between DescTools versions 0.99.39 dated 2020-12-07 and 0.99.40 dated 2021-02-03
DESCRIPTION | 10 MD5 | 135 ++++----- NAMESPACE | 4 NEWS | 27 + R/DescTools.r | 98 +++++- R/Dialogs.r | 24 + R/LinMod.R | 9 R/StatsAndCIs.r | 654 +++++++++++++++++++++++++++++++++++++++------ README.md | 2 build/vignette.rds |binary inst/doc/Combinatorics.pdf |binary inst/doc/TablesInR.pdf |binary man/Abind.Rd | 4 man/Between.Rd | 30 +- man/BinomCI.Rd | 22 + man/BinomDiffCI.Rd | 4 man/BinomRatioCI.rd | 63 ++-- man/CochranQTest.Rd | 2 man/CombPairs.Rd | 2 man/Conf.Rd | 2 man/CountCompCases.Rd | 2 man/DateFunctions.Rd | 2 man/Format.Rd | 12 man/GenRandGroups.Rd |only man/GetCurrWrd.Rd | 4 man/HosmerLemeshowTest.Rd | 1 man/KnnImputation.Rd | 2 man/Large.Rd | 6 man/PasswordDlg.Rd | 9 man/Permn.Rd | 14 man/PlotDot.Rd | 3 man/PlotFaces.Rd | 4 man/PostHocTest.Rd | 1 man/PpPlot.Rd | 2 man/StrAbbr.Rd | 1 man/StrAlign.Rd | 1 man/StrCap.Rd | 1 man/StrChop.Rd | 1 man/StrCountW.Rd | 1 man/StrDist.Rd | 1 man/StrExtract.Rd | 18 + man/StrIsNumeric.Rd | 1 man/StrPad.Rd | 1 man/StrPos.Rd | 1 man/StrRev.Rd | 1 man/StrRight.Rd | 1 man/StrSpell.Rd | 1 man/StrSplit.Rd | 3 man/StrTrim.Rd | 1 man/StrTrunc.Rd | 1 man/StrVal.Rd | 1 man/StripAttr.Rd | 1 man/WrdCaption.Rd | 2 man/WrdCellRange.Rd | 2 man/WrdFormatCells.Rd | 2 man/WrdMergeCells.Rd | 2 man/WrdPageBreak.Rd | 2 man/WrdParagraphFormat.Rd | 2 man/WrdPlot.Rd | 2 man/WrdSaveAs.Rd | 2 man/WrdStyle.Rd | 2 man/WrdTable.Rd | 2 man/WrdTableBorders.Rd | 2 man/XLDateToPOSIXct.Rd | 2 man/XLGetRange.Rd | 3 man/XLSaveAs.Rd | 2 man/XLView.Rd | 2 src/aux_fct.cpp | 84 +++++ tests/misc.R | 71 +++- 69 files changed, 1081 insertions(+), 296 deletions(-)
Title: Spatial Generalised Linear Mixed Models for Areal Unit Data
Description: Implements a class of univariate and multivariate spatial generalised linear mixed models for areal unit data, with inference in a Bayesian setting using Markov chain Monte Carlo (MCMC) simulation. The response variable can be binomial, Gaussian, multinomial, Poisson or zero-inflated Poisson (ZIP), and spatial autocorrelation is modelled by a set of random effects that are assigned a conditional autoregressive (CAR) prior distribution. A number of different models are available for univariate spatial data, including models with no random effects as well as random effects modelled by different types of CAR prior, including the BYM model (Besag et al. (1991) <doi:10.1007/BF00116466>), the Leroux model (Leroux et al. (2000) <doi:10.1007/978-1-4612-1284-3_4>) and the localised model (Lee et al. (2015) <doi:10.1002/env.2348>). Additionally, a multivariate CAR (MCAR) model for multivariate spatial data is available, as is a two-level hierarchical model for modelling data relating to individuals within areas. Full details are given in the vignette accompanying this package. The initial creation of this package was supported by the Economic and Social Research Council (ESRC) grant RES-000-22-4256, and on-going development has been supported by the Engineering and Physical Science Research Council (EPSRC) grant EP/J017442/1, ESRC grant ES/K006460/1, Innovate UK / Natural Environment Research Council (NERC) grant NE/N007352/1 and the TB Alliance.
Author: Duncan Lee
Maintainer: Duncan Lee <Duncan.Lee@glasgow.ac.uk>
Diff between CARBayes versions 5.2.2 dated 2021-01-15 and 5.2.3 dated 2021-02-03
DESCRIPTION | 8 ++++---- MD5 | 34 +++++++++++++++++----------------- R/MVS.CARleroux.R | 2 +- R/binomial.MVlerouxCAR.R | 2 +- R/common.functions.R | 12 ++++++------ R/gaussian.MVlerouxCAR.R | 2 +- R/multinomial.MVlerouxCAR.R | 2 +- R/poisson.MVlerouxCAR.R | 2 +- R/poisson.lerouxCAR.R | 8 ++++---- R/zip.bymCAR.R | 6 +++--- R/zip.glm.R | 6 +++--- R/zip.lerouxCAR.R | 6 +++--- inst/doc/CARBayes.Rnw | 6 +++--- inst/doc/CARBayes.pdf |binary man/CARBayes-package.Rd | 4 ++-- man/MVS.CARleroux.Rd | 2 +- src/CARBayes.cpp | 14 +++++++++----- vignettes/CARBayes.Rnw | 6 +++--- 18 files changed, 63 insertions(+), 59 deletions(-)
Title: Managing, Querying and Analyzing Tokenized Text
Description: Provides text analysis in R, focusing on the use of a tokenized text format. In this format, the positions of tokens are maintained, and each token can be annotated (e.g., part-of-speech tags, dependency relations).
Prominent features include advanced Lucene-like querying for specific tokens or contexts (e.g., documents, sentences),
similarity statistics for words and documents, exporting to DTM for compatibility with many text analysis packages,
and the possibility to reconstruct original text from tokens to facilitate interpretation.
Author: Kasper Welbers and Wouter van Atteveldt
Maintainer: Kasper Welbers <kasperwelbers@gmail.com>
Diff between corpustools versions 0.4.5 dated 2021-01-13 and 0.4.6 dated 2021-02-03
DESCRIPTION | 8 +- MD5 | 54 ++++++++-------- R/1_tcorpus.r | 19 ++++- R/RcppExports.R | 4 - R/create_tcorpus.r | 9 +- R/documentation_methods.r | 1 R/multitokens.r | 4 - R/search.r | 15 +++- R/search_dictionary.r | 106 ++++++++++++++++++++++++++------- R/tokenize.r | 1 R/udpipe.r | 2 R/udpipe_coref.r | 52 ++++++++-------- R/udpipe_tcorpus.r | 6 + R/util.r | 10 +++ build/vignette.rds |binary data/sotu_texts.rda |binary data/tc_sotu_udpipe.rda |binary inst/doc/corpustools.html | 8 +- man/create_tcorpus.Rd | 6 - man/search_dictionary.Rd | 3 man/tCorpus-cash-code_dictionary.Rd | 4 - man/tCorpus-cash-merge.Rd | 2 man/tCorpus-cash-replace_dictionary.Rd | 2 man/tCorpus-cash-udpipe_coref.Rd | 2 man/udpipe_tcorpus.Rd | 4 - src/RcppExports.cpp | 9 +- src/coref.cpp | 14 ++-- tests/testthat/test_tcorpus.r | 6 + 28 files changed, 229 insertions(+), 122 deletions(-)
Title: Processes Calcium Imaging Data
Description: Identifies the locations of neurons, and estimates their calcium concentrations over time using the SCALPEL method proposed in Petersen, Ashley; Simon, Noah; Witten, Daniela. SCALPEL: Extracting neurons from calcium imaging data. Ann. Appl. Stat. 12 (2018), no. 4, 2430--2456. <doi:10.1214/18-AOAS1159>. <https://projecteuclid.org/euclid.aoas/1542078051>.
Author: Ashley Petersen
Maintainer: Ashley Petersen <ashleyjpete@gmail.com>
Diff between scalpel versions 1.0.2 dated 2020-02-13 and 1.0.3 dated 2021-02-03
DESCRIPTION | 10 +++++----- MD5 | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-)
Title: Optimal Scaling
Description: Optimal scaling of a data vector, relative to a set of targets, is
obtained through a least-squares transformation subject to appropriate measurement
constraints. The targets are usually predicted values from a statistical
model. If the data are nominal level, then the transformation must be
identity-preserving. If the data are ordinal level, then the
transformation must be monotonic. If the data are discrete, then tied data
values must remain tied in the optimal transformation. If the data are
continuous, then tied data values can be untied in the optimal
transformation.
Author: William G. Jacoby
Maintainer: William G. Jacoby <wm.g.jacoby@gmail.com>
Diff between optiscale versions 1.2 dated 2020-02-28 and 1.2.2 dated 2021-02-03
DESCRIPTION | 18 +++++++++++++----- MD5 | 4 ++-- man/optiscale-package.Rd | 6 +++--- 3 files changed, 18 insertions(+), 10 deletions(-)
Title: Forecasting Models for Tidy Time Series
Description: Provides a collection of commonly used univariate and multivariate
time series forecasting models including automatically selected exponential
smoothing (ETS) and autoregressive integrated moving average (ARIMA) models.
These models work within the 'fable' framework provided by the 'fabletools'
package, which provides the tools to evaluate, visualise, and combine models
in a workflow consistent with the tidyverse.
Author: Mitchell O'Hara-Wild [aut, cre],
Rob Hyndman [aut],
Earo Wang [aut],
Gabriel Caceres [ctb] (NNETAR implementation),
Tim-Gunnar Hensel [ctb],
Timothy Hyndman [ctb]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between fable versions 0.2.1 dated 2020-06-16 and 0.3.0 dated 2021-02-03
DESCRIPTION | 22 + MD5 | 105 ++++--- NAMESPACE | 9 NEWS.md | 37 ++ R/00_specials.R | 33 +- R/ar.R | 67 ++++- R/arima.R | 148 +++++++---- R/compat-purrr.R | 10 R/croston.R | 5 R/ets.R | 88 +++--- R/lagwalk.R | 87 +++++- R/lm.R | 21 - R/mean.R | 56 +++- R/nnetar.R | 155 ++++++++--- R/theta.R | 22 + R/utils.R | 10 R/var.R | 15 - README.md | 23 - build/partial.rdb |only build/vignette.rds |binary inst/WORDLIST | 4 inst/doc/fable.html | 520 +++++++++++++-------------------------- inst/doc/transformations.Rmd | 2 inst/doc/transformations.html | 317 +++++------------------ man/ARIMA.Rd | 30 +- man/CROSTON.Rd | 2 man/THETA.Rd | 19 + man/fable-package.Rd | 2 man/figures/README-example-1.png |binary man/forecast.AR.Rd | 2 man/forecast.ARIMA.Rd | 2 man/forecast.RW.Rd | 2 man/forecast.TSLM.Rd | 2 man/forecast.VAR.Rd | 2 man/forecast.fable_theta.Rd | 2 man/forecast.model_mean.Rd | 2 man/generate.AR.Rd |only man/interpolate.ARIMA.Rd | 2 man/interpolate.TSLM.Rd | 2 man/interpolate.model_mean.Rd | 2 man/refit.NNETAR.Rd |only man/refit.RW.Rd |only man/refit.model_mean.Rd |only man/residuals.AR.Rd | 4 man/residuals.ARIMA.Rd | 4 man/residuals.ETS.Rd | 2 man/residuals.NNETAR.Rd | 2 man/residuals.RW.Rd | 2 man/residuals.TSLM.Rd | 2 man/residuals.VAR.Rd | 2 man/residuals.croston.Rd | 2 man/residuals.fable_theta.Rd | 2 man/residuals.model_mean.Rd | 2 man/unitroot_options.Rd | 4 tests/testthat/test-arima.R | 2 vignettes/transformations.Rmd | 2 56 files changed, 971 insertions(+), 890 deletions(-)
Title: A Pipeline Toolkit for Reproducible Computation at Scale
Description: A general-purpose computational engine for data
analysis, drake rebuilds intermediate data objects when their
dependencies change, and it skips work when the results are already up
to date. Not every execution starts from scratch, there is native
support for parallel and distributed computing, and completed projects
have tangible evidence that they are reproducible. Extensive
documentation, from beginner-friendly tutorials to practical examples
and more, is available at the reference website
<https://docs.ropensci.org/drake/> and the online manual
<https://books.ropensci.org/drake/>.
Author: William Michael Landau [aut, cre]
(<https://orcid.org/0000-0003-1878-3253>),
Alex Axthelm [ctb],
Jasper Clarkberg [ctb],
Kirill Müller [ctb],
Ben Bond-Lamberty [ctb] (<https://orcid.org/0000-0001-9525-4633>),
Tristan Mahr [ctb] (<https://orcid.org/0000-0002-8890-5116>),
Miles McBain [ctb] (<https://orcid.org/0000-0003-2865-2548>),
Noam Ross [ctb] (<https://orcid.org/0000-0002-2136-0000>),
Ellis Hughes [ctb],
Matthew Mark Strasiotto [ctb],
Ben Marwick [rev],
Peter Slaughter [rev],
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between drake versions 7.13.0 dated 2021-01-04 and 7.13.1 dated 2021-02-03
DESCRIPTION | 6 +++--- MD5 | 5 +++-- NEWS.md | 8 ++++++++ inst/NOTICE |only 4 files changed, 14 insertions(+), 5 deletions(-)
Title: Indexed Data Frames
Description: Provides extended data frames, with a special data frame column which contains two indexes, with potentially a nesting structure.
Author: Yves Croissant [aut, cre]
Maintainer: Yves Croissant <yves.croissant@univ-reunion.fr>
Diff between dfidx versions 0.0-3 dated 2020-05-08 and 0.0-4 dated 2021-02-03
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NEWS.md | 8 ++++++++ R/dfidx.R | 11 ++++++++++- build/vignette.rds |binary inst/doc/dfidx.html | 38 ++++++++++++++++++++++++-------------- man/methods.dfidx.Rd | 2 +- man/reexports.Rd | 2 +- 8 files changed, 56 insertions(+), 29 deletions(-)
Title: Boltzmann Bayes Learner
Description: Supervised learning using Boltzmann Bayes model inference,
which extends naive Bayes model to include interactions. Enables
classification of data into multiple response groups based on a large
number of discrete predictors that can take factor values of
heterogeneous levels. Either pseudo-likelihood or mean field
inference can be used with L2 regularization, cross-validation, and
prediction on new data.
Woo et al. (2016) <doi:10.1186/s12864-016-2871-3>.
Author: Jun Woo [aut, cre] (<https://orcid.org/0000-0003-3220-2064>)
Maintainer: Jun Woo <junwoo035@gmail.com>
Diff between bbl versions 0.3.1 dated 2020-03-11 and 0.4.0 dated 2021-02-03
bbl-0.3.1/bbl/NEWS |only bbl-0.4.0/bbl/DESCRIPTION | 14 - bbl-0.4.0/bbl/MD5 | 53 +++---- bbl-0.4.0/bbl/R/bbl_s3.R | 33 +++- bbl-0.4.0/bbl/R/cross_val.R | 37 +++-- bbl-0.4.0/bbl/R/methods.R | 2 bbl-0.4.0/bbl/R/utils.R | 20 ++ bbl-0.4.0/bbl/build/vignette.rds |binary bbl-0.4.0/bbl/inst/doc/article.R | 108 +++++++++------ bbl-0.4.0/bbl/inst/doc/article.Rnw | 255 +++++++++++++++++++++--------------- bbl-0.4.0/bbl/inst/doc/article.pdf |binary bbl-0.4.0/bbl/man/bbl.Rd | 75 +++++----- bbl-0.4.0/bbl/man/bbl.fit.Rd | 12 - bbl-0.4.0/bbl/man/crossVal.Rd | 28 +-- bbl-0.4.0/bbl/man/fitted.bbl.Rd | 2 bbl-0.4.0/bbl/man/freq2raw.Rd | 3 bbl-0.4.0/bbl/man/logLik.bbl.Rd | 6 bbl-0.4.0/bbl/man/mcSample.Rd | 2 bbl-0.4.0/bbl/man/mlestimate.Rd | 10 - bbl-0.4.0/bbl/man/plot.bbl.Rd | 8 - bbl-0.4.0/bbl/man/plot.cv.bbl.Rd | 2 bbl-0.4.0/bbl/man/predict.bbl.Rd | 12 - bbl-0.4.0/bbl/man/randompar.Rd | 4 bbl-0.4.0/bbl/man/randomsamp.Rd | 2 bbl-0.4.0/bbl/man/residuals.bbl.Rd | 2 bbl-0.4.0/bbl/man/sample_xi.Rd | 4 bbl-0.4.0/bbl/man/summary.bbl.Rd | 30 ++-- bbl-0.4.0/bbl/vignettes/article.Rnw | 255 +++++++++++++++++++++--------------- 28 files changed, 562 insertions(+), 417 deletions(-)
Title: Actuarial Functions and Heavy Tailed Distributions
Description: Functions and data sets for actuarial science:
modeling of loss distributions; risk theory and ruin theory;
simulation of compound models, discrete mixtures and compound
hierarchical models; credibility theory. Support for many additional
probability distributions to model insurance loss size and
frequency: 23 continuous heavy tailed distributions; the
Poisson-inverse Gaussian discrete distribution; zero-truncated and
zero-modified extensions of the standard discrete distributions.
Support for phase-type distributions commonly used to compute ruin
probabilities.
Author: Vincent Goulet [cre, aut],
Sébastien Auclair [ctb],
Christophe Dutang [aut],
Nicholas Langevin [ctb],
Xavier Milhaud [ctb],
Tommy Ouellet [ctb],
Alexandre Parent [ctb],
Mathieu Pigeon [aut],
Louis-Philippe Pouliot [ctb],
Jeffrey A. Ryan [aut] (Package API),
Robert Gentleman [aut] (Parts of the R to C interface),
Ross Ihaka [aut] (Parts of the R to C interface),
R Core Team [aut] (Parts of the R to C interface),
R Foundation [aut] (Parts of the R to C interface)
Maintainer: Vincent Goulet <vincent.goulet@act.ulaval.ca>
Diff between actuar versions 3.1-0 dated 2021-01-06 and 3.1-1 dated 2021-02-03
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- R/rcompound.R | 6 +++--- R/rmixture.R | 2 +- inst/NEWS.Rd | 9 +++++++++ inst/doc/actuar.pdf |binary inst/doc/coverage.pdf |binary inst/doc/credibility.pdf |binary inst/doc/distributions.pdf |binary inst/doc/modeling.pdf |binary inst/doc/risk.pdf |binary inst/doc/simulation.pdf |binary 12 files changed, 28 insertions(+), 19 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-29 0.5.4
2021-01-25 0.5.3
2019-04-19 0.5.2
2018-05-17 0.5.0
2018-02-13 0.4.2
2018-02-12 0.4.1
2018-02-01 0.4.0
2017-11-14 0.3.1
2017-11-09 0.3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-04-18 1.0.0
2016-11-19 0.2.0
2016-10-30 0.1.0