Title: Tools for Reading SDMX Data and Metadata
Description: Set of classes and methods to read data and metadata documents
exchanged through the Statistical Data and Metadata Exchange (SDMX) framework,
currently focusing on the SDMX XML standard format (SDMX-ML).
Author: Emmanuel Blondel [aut, cre] (<https://orcid.org/0000-0002-5870-5762>),
Matthieu Stigler [ctb] (<https://orcid.org/0000-0002-6802-4290>),
Eric Persson [ctb]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between rsdmx versions 0.5-14 dated 2020-04-07 and 0.6 dated 2021-02-06
DESCRIPTION | 27 ++++----- MD5 | 54 +++++++++--------- NAMESPACE | 4 + R/Class-SDMXRequestBuilder.R | 8 ++ R/SDMX-methods.R | 2 R/SDMXData-methods.R | 2 R/SDMXDotStatRequestBuilder-methods.R | 36 +++++------- R/SDMXREST20RequestBuilder-methods.R | 16 +++-- R/SDMXREST21RequestBuilder-methods.R | 16 +++-- R/SDMXRequestBuilder-methods.R | 10 ++- R/SDMXServiceProvider-methods.R | 23 +++++++ R/readSDMX.R | 99 +++++++++++++++++++++------------- R/rsdmx.R | 4 - R/rsdmx_logger.R |only README.md | 22 +++---- inst/doc/quickstart.R | 6 +- inst/doc/quickstart.Rmd | 16 ++--- inst/doc/quickstart.html | 16 ++--- man/SDMXDotStatRequestBuilder.Rd | 28 ++++++--- man/SDMXREST20RequestBuilder.Rd | 7 +- man/SDMXREST21RequestBuilder.Rd | 9 ++- man/SDMXRequestBuilder.Rd | 9 ++- man/getNamespaces.Rd | 7 ++ man/readSDMX.Rd | 22 +++++-- man/rsdmx.Rd | 4 - man/rsdmxLogger.Rd |only man/setDSD.Rd | 7 ++ tests/testthat/test_Main_Helpers.R | 70 ++++++++++++++++++++++++ vignettes/quickstart.Rmd | 16 ++--- 29 files changed, 359 insertions(+), 181 deletions(-)
Title: Install 'OpenCV'
Description: Installs 'OpenCV' for use by other packages. 'OpenCV' <https://opencv.org/>
is library of programming functions mainly aimed at real-time computer
vision. This 'Lite' version contains the stable base version of 'OpenCV' and
does not contain any of its externally contributed modules.
Author: Simon Garnier [aut, cre] (<https://orcid.org/0000-0002-3886-3974>),
Muschelli John [ctb]
Maintainer: Simon Garnier <garnier@njit.edu>
Diff between ROpenCVLite versions 4.30.2 dated 2020-07-05 and 4.50.0 dated 2021-02-06
ROpenCVLite-4.30.2/ROpenCVLite/inst/OpenCVModule.4.3.0.cmake |only ROpenCVLite-4.50.0/ROpenCVLite/DESCRIPTION | 8 ROpenCVLite-4.50.0/ROpenCVLite/MD5 | 24 - ROpenCVLite-4.50.0/ROpenCVLite/NEWS.md | 13 ROpenCVLite-4.50.0/ROpenCVLite/R/opencv.R | 24 - ROpenCVLite-4.50.0/ROpenCVLite/README.md | 15 ROpenCVLite-4.50.0/ROpenCVLite/build/vignette.rds |binary ROpenCVLite-4.50.0/ROpenCVLite/inst/OpenCVModule.4.5.0.cmake |only ROpenCVLite-4.50.0/ROpenCVLite/inst/doc/install.Rmd | 2 ROpenCVLite-4.50.0/ROpenCVLite/inst/doc/install.html | 240 +---------- ROpenCVLite-4.50.0/ROpenCVLite/inst/doc/usage.Rmd | 6 ROpenCVLite-4.50.0/ROpenCVLite/inst/doc/usage.html | 211 --------- ROpenCVLite-4.50.0/ROpenCVLite/vignettes/install.Rmd | 2 ROpenCVLite-4.50.0/ROpenCVLite/vignettes/usage.Rmd | 6 14 files changed, 96 insertions(+), 455 deletions(-)
Title: Handle Data with Messy Header Rows and Broken Values
Description: Verb-like functions to work with messy data, often derived from
spreadsheets or parsed PDF tables. Includes functions for unwrapping
values broken up across rows, relocating embedded grouping values,
and to annotate meaningful formatting in spreadsheet files.
Author: Luis D. Verde Arregoitia [aut, cre]
(<https://orcid.org/0000-0001-9520-6543>)
Maintainer: Luis D. Verde Arregoitia <luis@liomys.mx>
Diff between unheadr versions 0.3.0 dated 2020-10-25 and 0.3.1 dated 2021-02-06
DESCRIPTION | 8 MD5 | 29 - NEWS.md | 4 R/dataset_documentation.R | 15 R/mash_colnames.R | 17 - R/unbreak_fn.R | 6 R/unbreak_rows.R | 10 build/partial.rdb |only data/AOEunits.rda |binary inst/doc/unheadr-vignette.html | 684 +++++++++++++++-------------------------- man/mash_colnames.Rd | 15 man/primates2017.Rd | 5 man/primates2017_broken.Rd | 5 man/primates2017_wrapped.Rd | 5 man/unbreak_rows.Rd | 3 man/unbreak_vals.Rd | 8 16 files changed, 321 insertions(+), 493 deletions(-)
Title: Lightweight Variable Labels
Description: Assign, extract, or remove variable labels from R vectors.
Lightweight and dependency-free.
Author: Marius Barth [aut, cre] (<https://orcid.org/0000-0002-3421-6665>)
Maintainer: Marius Barth <marius.barth.uni.koeln@gmail.com>
Diff between tinylabels versions 0.1.0 dated 2020-11-02 and 0.2.0 dated 2021-02-06
DESCRIPTION | 11 MD5 | 30 +- NEWS.md |only R/assign_label.R | 29 +- R/tinylabels.R | 4 R/variable_label.R | 20 - README.md | 232 ++++++++++++++-- inst/CITATION |only inst/doc/tinylabels_vignette.R | 3 inst/doc/tinylabels_vignette.Rmd | 44 +-- inst/doc/tinylabels_vignette.html | 505 +++++++++-------------------------- man/label_variable.Rd | 2 man/tinylabels.Rd | 4 man/variable_label.Rd | 18 - tests/testthat/test-unlabel.R | 2 tests/testthat/test-variable_label.R | 64 +++- vignettes/tinylabels_vignette.Rmd | 44 +-- 17 files changed, 533 insertions(+), 479 deletions(-)
Title: Genetic Analysis of Populations with Mixed Reproduction
Description: Population genetic analyses for hierarchical analysis of partially
clonal populations built upon the architecture of the 'adegenet' package.
Originally described in Kamvar, Tabima, and Grünwald (2014)
<doi:10.7717/peerj.281> with version 2.0 described in Kamvar, Brooks, and
Grünwald (2015) <doi:10.3389/fgene.2015.00208>.
Author: Zhian N. Kamvar [cre, aut] (<https://orcid.org/0000-0003-1458-7108>),
Javier F. Tabima [aut] (<https://orcid.org/0000-0002-3603-2691>),
Sydney E. Everhart [ctb, dtc] (<https://orcid.org/0000-0002-5773-1280>),
Jonah C. Brooks [aut],
Stacy A. Krueger-Hadfield [ctb]
(<https://orcid.org/0000-0002-7324-7448>),
Erik Sotka [ctb],
Brian J. Knaus [ctb] (<https://orcid.org/0000-0003-1665-4343>),
Patrick G. Meirmans [ctb] (<https://orcid.org/0000-0002-6395-8107>),
Frédéric D. Chevalier [ctb] (<https://orcid.org/0000-0003-2611-8106>),
David Folarin [aut],
Niklaus J. Grünwald [ths] (<https://orcid.org/0000-0003-1656-7602>)
Maintainer: Zhian N. Kamvar <zkamvar@gmail.com>
Diff between poppr versions 2.8.7 dated 2021-01-06 and 2.9.0 dated 2021-02-06
poppr-2.8.7/poppr/inst/doc/mlg.R |only poppr-2.8.7/poppr/inst/doc/mlg.Rmd |only poppr-2.8.7/poppr/inst/doc/mlg.html |only poppr-2.8.7/poppr/inst/doc/poppr_manual.R |only poppr-2.8.7/poppr/inst/doc/poppr_manual.Rmd |only poppr-2.8.7/poppr/inst/doc/poppr_manual.html |only poppr-2.8.7/poppr/vignettes/mlg.Rmd |only poppr-2.8.7/poppr/vignettes/poppr_manual.Rmd |only poppr-2.9.0/poppr/DESCRIPTION | 9 poppr-2.9.0/poppr/MD5 | 88 ++++----- poppr-2.9.0/poppr/NAMESPACE | 1 poppr-2.9.0/poppr/NEWS.md | 30 +++ poppr-2.9.0/poppr/R/Index_calculations.r | 29 ++- poppr-2.9.0/poppr/R/bootstraping.R | 2 poppr-2.9.0/poppr/R/bruvo.r | 62 +++++- poppr-2.9.0/poppr/R/classes.r | 2 poppr-2.9.0/poppr/R/data_subset.r | 53 +++-- poppr-2.9.0/poppr/R/file_handling.r | 6 poppr-2.9.0/poppr/R/internal.r | 200 +++++++++++++++------ poppr-2.9.0/poppr/R/messages.r | 9 poppr-2.9.0/poppr/R/methods.r | 2 poppr-2.9.0/poppr/R/mlg.r | 48 +++-- poppr-2.9.0/poppr/R/poppr.R | 4 poppr-2.9.0/poppr/R/visualizations.r | 45 +++- poppr-2.9.0/poppr/README.md | 21 +- poppr-2.9.0/poppr/build/partial.rdb |binary poppr-2.9.0/poppr/build/vignette.rds |binary poppr-2.9.0/poppr/inst/doc/algo.R | 6 poppr-2.9.0/poppr/inst/doc/algo.pdf |binary poppr-2.9.0/poppr/inst/shiny/msn_explorer/server.R | 4 poppr-2.9.0/poppr/man/bruvo.dist.Rd | 23 ++ poppr-2.9.0/poppr/man/bruvo.msn.Rd | 11 - poppr-2.9.0/poppr/man/genclone-class.Rd | 2 poppr-2.9.0/poppr/man/genotype_curve.Rd | 4 poppr-2.9.0/poppr/man/mlg.Rd | 6 poppr-2.9.0/poppr/man/plot_poppr_msn.Rd | 8 poppr-2.9.0/poppr/man/poppr-package.Rd | 4 poppr-2.9.0/poppr/man/poppr.Rd | 9 poppr-2.9.0/poppr/man/poppr.msn.Rd | 9 poppr-2.9.0/poppr/man/popsub.Rd | 19 + poppr-2.9.0/poppr/src/bitwise_distance.c | 9 poppr-2.9.0/poppr/src/init.c | 2 poppr-2.9.0/poppr/src/poppr_distance.c | 101 ++++++++++ poppr-2.9.0/poppr/tests/testthat/test-bitwise.R | 12 - poppr-2.9.0/poppr/tests/testthat/test-import.R | 45 ++++ poppr-2.9.0/poppr/tests/testthat/test-mlg.R | 25 +- poppr-2.9.0/poppr/tests/testthat/test-popsub.R | 32 +-- poppr-2.9.0/poppr/tests/testthat/test-trees.R | 2 poppr-2.9.0/poppr/tests/testthat/test-values.R | 44 ++++ 49 files changed, 742 insertions(+), 246 deletions(-)
Title: Self Contained Units of Source Code
Description: Provides modules as an organizational unit for source code. Modules
enforce to be more rigorous when defining dependencies and have
a local search path. They can be used as a sub unit within packages
or in scripts.
Author: Sebastian Warnholz [aut, cre]
Maintainer: Sebastian Warnholz <wahani@gmail.com>
Diff between modules versions 0.9.0 dated 2021-01-31 and 0.10.0 dated 2021-02-06
DESCRIPTION | 6 MD5 | 20 +- NEWS | 8 R/depend.R | 18 +- R/export.R | 47 +++-- build/vignette.rds |binary inst/doc/modulesAsFiles.html | 174 +++++++++----------- inst/doc/modulesAsObjects.html | 356 ++++++++++++++++++++--------------------- inst/doc/modulesInR.html | 200 +++++++++++------------ tests/testthat/test-export.R | 23 +- tests/testthat/test-import.R | 14 - 11 files changed, 433 insertions(+), 433 deletions(-)
Title: Sample Size Calculation in Hierarchical 2x2 Factorial Trials
Description: Implements the sample size methods for hierarchical 2x2 factorial trials under a series of hypothesis tests proposed in "Sample size calculation in hierarchical 2x2 factorial trials with unequal cluster sizes" (under review), and provides the table and plot generators for the sample size estimations.
Author: Zizhong Tian [aut, cre],
Denise Esserman [aut],
Guangyu Tong [aut],
Fan Li [aut]
Maintainer: Zizhong Tian <zizhong.tian@yale.edu>
Diff between H2x2Factorial versions 1.0.2 dated 2021-02-05 and 1.0.3 dated 2021-02-06
DESCRIPTION | 30 ++++++++++++++++---------- MD5 | 5 ++-- README.md | 69 +++++++++++++++++++++++++++++++++++++++++++++++++++--------- man/figures |only 4 files changed, 81 insertions(+), 23 deletions(-)
Title: Loads Shapefiles of Official Spatial Data Sets of Brazil
Description: Easy access to official spatial data sets of Brazil as 'sf' objects
in R. The package includes a wide range of geospatial data available
at various geographic scales and for various years with harmonized
attributes, projection and topology.
Author: Rafael H. M. Pereira [aut, cre]
(<https://orcid.org/0000-0003-2125-7465>),
Caio Nogueira Goncalves [aut],
Paulo Henrique Fernandes de Araujo [ctb],
Guilherme Duarte Carvalho [ctb],
Rodrigo Almeida de Arruda [ctb],
Igor Nascimento [ctb],
Barbara Santiago Pedreira da Costa [ctb],
Welligtton Silva Cavedo [ctb],
Pedro R. Andrade [ctb],
Alan da Silva [ctb],
Carlos Kauê Vieira Braga [ctb],
Carl Schmertmann [ctb],
Ipea - Institue for Applied Economic Research [cph, fnd]
Maintainer: Rafael H. M. Pereira <rafa.pereira.br@gmail.com>
Diff between geobr versions 1.5 dated 2021-02-03 and 1.5-1 dated 2021-02-06
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/download_metadata.R | 15 ++++++++++++--- 3 files changed, 18 insertions(+), 9 deletions(-)
Title: Create, Manipulate and Query Parameter Terms
Description: Creates, manipulates, queries and repairs vectors
of parameter terms. Parameter terms are the labels used to reference
values in vectors, matrices and arrays. They represent the names in
coefficient tables and the column names in 'mcmc' and 'mcmc.list'
objects.
Author: Joe Thorley [aut, cre] (<https://orcid.org/0000-0002-7683-4592>),
Kirill Müller [aut] (<https://orcid.org/0000-0002-1416-3412>),
Ayla Pearson [ctb] (<https://orcid.org/0000-0001-7388-1222>),
Poisson Consulting [cph, fnd]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between term versions 0.3.0 dated 2020-09-25 and 0.3.1 dated 2021-02-06
DESCRIPTION | 11 +++++------ MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/deprecated.R | 4 ++-- README.md | 5 ++--- build/term.pdf |binary inst/WORDLIST | 6 +++--- 7 files changed, 22 insertions(+), 20 deletions(-)
Title: Lists of Numeric Atomic Objects
Description: Create and manipulate numeric list ('nlist')
objects. An 'nlist' is an S3 list of uniquely named numeric objects.
An numeric object is an integer or double vector, matrix or array. An
'nlists' object is a S3 class list of 'nlist' objects with the same
names, dimensionalities and typeofs. Numeric list objects are of
interest because they are the raw data inputs for analytic engines
such as 'JAGS', 'STAN' and 'TMB'. Numeric lists objects, which are
useful for storing multiple realizations of of simulated data sets,
can be converted to coda::mcmc and coda::mcmc.list objects.
Author: Joe Thorley [aut, cre] (<https://orcid.org/0000-0002-7683-4592>),
Poisson Consulting [cph, fnd]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between nlist versions 0.3.0 dated 2020-09-25 and 0.3.1 dated 2021-02-06
DESCRIPTION | 34 +++++++++-------- MD5 | 36 +++++++++--------- NAMESPACE | 1 NEWS.md | 5 ++ R/as-nlists.R | 11 +++++ R/is.R | 2 - R/params.R | 1 R/tidy.R | 73 ++++++++++++++++++++++++------------ README.md | 79 +++++++++++++++++++++------------------- build/nlist.pdf |binary inst/WORDLIST | 7 ++- man/as_nlists.Rd | 5 ++ man/is_numeric.Rd | 2 - man/params.Rd | 2 + man/tidy.mcmc.Rd | 8 ++-- man/tidy.mcmc.list.Rd | 8 ++-- man/tidy.nlists.Rd | 10 +++-- tests/testthat/test-as-nlists.R | 28 ++++++++++++++ tests/testthat/test-tidy.R | 62 +++++++++++++++++++++++++++++++ 19 files changed, 266 insertions(+), 108 deletions(-)
Title: Regression Modeling Strategies
Description: Regression modeling, testing, estimation, validation,
graphics, prediction, and typesetting by storing enhanced model design
attributes in the fit. 'rms' is a collection of functions that
assist with and streamline modeling. It also contains functions for
binary and ordinal logistic regression models, ordinal models for
continuous Y with a variety of distribution families, and the Buckley-James
multiple regression model for right-censored responses, and implements
penalized maximum likelihood estimation for logistic and ordinary
linear models. 'rms' works with almost any regression model, but it
was especially written to work with binary or ordinal regression
models, Cox regression, accelerated failure time models,
ordinary linear models, the Buckley-James model, generalized least
squares for serially or spatially correlated observations, generalized
linear models, and quantile regression.
Author: Frank E Harrell Jr <fh@fharrell.com>
Maintainer: Frank E Harrell Jr <fh@fharrell.com>
Diff between rms versions 6.1-0 dated 2020-11-29 and 6.1-1 dated 2021-02-06
DESCRIPTION | 12 +++++------- MD5 | 8 ++++---- NEWS | 3 +++ R/rms.s | 13 ++++++++----- R/rmsMisc.s | 19 +++++++++++-------- 5 files changed, 31 insertions(+), 24 deletions(-)
Title: Tabulate Descriptive Statistics in Multiple Formats
Description: Creates a table of descriptive statistics
for factor and numeric columns in a data frame. Displays
these by groups, if any. Highly customizable, with support
for 'html' and 'pdf' provided by 'kableExtra'. Respects
original column order, column labels, and factor level order.
See ?tablet.data.frame and vignettes.
Author: Tim Bergsma
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between tablet versions 0.2.0 dated 2021-01-08 and 0.2.1 dated 2021-02-06
DESCRIPTION | 6 - MD5 | 22 ++--- R/tablet.R | 24 +++--- build/vignette.rds |binary inst/doc/tablet-introduction-html.html | 130 ++++++++++++++++++++++----------- inst/doc/tablet-introduction-pdf.Rmd | 2 inst/doc/tablet-introduction-pdf.pdf |binary man/groupfull.data.frame.Rd | 2 man/tablet.data.frame.Rd | 7 + man/tablet.groupwise.Rd | 2 man/widgets.devalued.Rd | 1 vignettes/tablet-introduction-pdf.Rmd | 2 12 files changed, 129 insertions(+), 69 deletions(-)
Title: Simple Tools to Compute Landscape Connectivity Metrics
Description: Provides functions to upload vectorial data and derive landscape
connectivity metrics in habitat or matrix systems. Additionally, includes an
approach to assess individual patch contribution to the overall landscape
connectivity, enabling the prioritization of habitat patches. The computation
of landscape connectivity and patch importance are very useful in Landscape
Ecology research. The metrics available are: number of components, number of
links, size of the largest component, mean size of components, class coincidence
probability, landscape coincidence probability, characteristic path length,
expected cluster size, area-weighted flux and integral index of connectivity.
Pascual-Hortal, L., and Saura, S. (2006) <doi:10.1007/s10980-006-0013-z>
Urban, D., and Keitt, T. (2001) <doi:10.2307/2679983>
Laita, A., Kotiaho, J., Monkkonen, M. (2011) <doi:10.1007/s10980-011-9620-4>.
Author: Frederico Mestre [aut, cre],
Bruno Silva [aut]
Maintainer: Frederico Mestre <mestre.frederico@gmail.com>
Diff between lconnect versions 0.1.0 dated 2019-04-05 and 0.1.1 dated 2021-02-06
DESCRIPTION | 6 MD5 | 36 +-- NAMESPACE | 16 - R/component_calc.R | 22 +- R/con_metric.R | 402 ++++++++++++++++++++--------------------- R/is.lconnect.R | 4 R/is.pimp.R | 4 R/patch_imp.R | 130 ++++++------- R/plot.lconnect.R | 40 ++-- R/plot.pimp.R | 46 ++-- R/remove_patch.R | 14 - R/upload_land.R | 166 ++++++++-------- README.md | 190 +++++++++---------- inst/extdata/vec_projected.qpj | 2 man/con_metric.Rd | 228 +++++++++++------------ man/patch_imp.Rd | 106 +++++----- man/plot.lconnect.Rd | 64 +++--- man/plot.pimp.Rd | 68 +++--- man/upload_land.Rd | 106 +++++----- 19 files changed, 825 insertions(+), 825 deletions(-)
Title: An R Interface to the 'GraphHopper' Directions API
Description: Provides a quick and easy access to the 'GraphHopper' Directions API.
'GraphHopper' <https://www.graphhopper.com/> itself is a routing engine based on 'OpenStreetMap' data.
API responses can be converted to simple feature (sf) objects in a convenient way.
Author: Stefan Kuethe [aut, cre]
Maintainer: Stefan Kuethe <crazycapivara@gmail.com>
Diff between graphhopper versions 0.1.1 dated 2020-11-23 and 0.1.2 dated 2021-02-06
graphhopper-0.1.1/graphhopper/man/figures/README-example-1.png |only graphhopper-0.1.1/graphhopper/man/figures/README-example-2.png |only graphhopper-0.1.1/graphhopper/man/figures/README-example-3.png |only graphhopper-0.1.1/graphhopper/man/figures/README-unnamed-chunk-1-1.png |only graphhopper-0.1.2/graphhopper/DESCRIPTION | 10 - graphhopper-0.1.2/graphhopper/MD5 | 47 +++--- graphhopper-0.1.2/graphhopper/NAMESPACE | 2 graphhopper-0.1.2/graphhopper/NEWS.md | 6 graphhopper-0.1.2/graphhopper/R/as-sf.R | 2 graphhopper-0.1.2/graphhopper/R/constants.R | 3 graphhopper-0.1.2/graphhopper/R/core.R | 12 + graphhopper-0.1.2/graphhopper/R/isochrone-endpoint.R |only graphhopper-0.1.2/graphhopper/R/utils.R | 4 graphhopper-0.1.2/graphhopper/README.md | 74 +++++++--- graphhopper-0.1.2/graphhopper/man/figures/README-isochrone-example-1.png |only graphhopper-0.1.2/graphhopper/man/figures/README-route-example-1.png |binary graphhopper-0.1.2/graphhopper/man/figures/README-route-example-2.png |binary graphhopper-0.1.2/graphhopper/man/figures/README-spt-example-1.png |binary graphhopper-0.1.2/graphhopper/man/figures/README-spt-example-lines-1.png |binary graphhopper-0.1.2/graphhopper/man/gh_as_sf.Rd | 15 +- graphhopper-0.1.2/graphhopper/man/gh_get_info.Rd | 10 - graphhopper-0.1.2/graphhopper/man/gh_get_isochrone.Rd |only graphhopper-0.1.2/graphhopper/man/gh_get_route.Rd | 10 - graphhopper-0.1.2/graphhopper/man/gh_get_routes.Rd | 28 +-- graphhopper-0.1.2/graphhopper/man/gh_get_spt.Rd | 18 +- graphhopper-0.1.2/graphhopper/man/gh_spt_as_linestrings_sf.Rd | 18 +- graphhopper-0.1.2/graphhopper/tests/testthat/test_route-local-gh-instance.R | 1 graphhopper-0.1.2/graphhopper/tests/testthat/test_spt-local-gh-instance.R | 1 28 files changed, 160 insertions(+), 101 deletions(-)
Title: Statistical Modelling for Plant Size Distributions
Description: Developed for the following tasks. 1 ) Computing the probability density function,
cumulative distribution function, random generation, and estimating the parameters
of the eleven mixture models. 2 ) Point estimation of the parameters of two -
parameter Weibull distribution using twelve methods and three - parameter Weibull
distribution using nine methods. 3 ) The Bayesian inference for the three -
parameter Weibull distribution. 4 ) Estimating parameters of the three - parameter
Birnbaum - Saunders, generalized exponential, and Weibull distributions fitted to
grouped data using three methods including approximated maximum likelihood,
expectation maximization, and maximum likelihood. 5 ) Estimating the parameters
of the gamma, log-normal, and Weibull mixture models fitted to the grouped data
through the EM algorithm, 6 ) Estimating parameters of the nonlinear height curve
fitted to the height - diameter observation, 7 ) Estimating parameters, computing
probability density function, cumulative distribution function, and generating
realizations from gamma shape mixture model introduced by Venturini et al. (2008)
<doi:10.1214/07-AOAS156> , 8 ) The Bayesian inference, computing probability
density function, cumulative distribution function, and generating realizations
from four-parameter Johnson SB distribution, 9 ) Robust multiple linear regression
analysis when error term follows skewed t distribution, and 10 ) Estimating
parameters of a given distribution fitted to grouped data using method of maximum
likelihood.
Author: Mahdi Teimouri
Maintainer: Mahdi Teimouri <teimouri@aut.ac.ir>
Diff between ForestFit versions 0.6.1 dated 2020-07-08 and 0.7.1 dated 2021-02-06
ForestFit-0.6.1/ForestFit/man/fitgrouped.Rd |only ForestFit-0.7.1/ForestFit/DESCRIPTION | 18 ++--- ForestFit-0.7.1/ForestFit/MD5 | 9 +- ForestFit-0.7.1/ForestFit/NAMESPACE | 3 ForestFit-0.7.1/ForestFit/R/ForestFit.R | 97 ++++++++++++++++++++++++++- ForestFit-0.7.1/ForestFit/man/fitgrouped1.Rd |only ForestFit-0.7.1/ForestFit/man/fitgrouped2.Rd |only 7 files changed, 112 insertions(+), 15 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-22 1.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-07-27 0.1.3
Title: Performs Quality Control, Data Normalization, and Batch Effect
Correction for 'NanoString nCounter' Data
Description: Provides quality control (QC), normalization, and
batch effect correction operations for 'NanoString nCounter' data,
Talhouk et al. (2016) <doi:10.1371/journal.pone.0153844>. Various
metrics are used to determine which samples passed or failed QC. Gene
expression should first be normalized to housekeeping genes, before a
reference-based approach is used to adjust for batch effects. Raw
NanoString data can be imported in the form of Reporter Code Count
(RCC) files.
Author: Derek Chiu [aut, cre],
Aline Talhouk [aut],
Samuel Leung [aut]
Maintainer: Derek Chiu <dchiu@bccrc.ca>
Diff between nanostringr versions 0.1.4 dated 2019-05-09 and 0.2.0 dated 2021-02-06
DESCRIPTION | 15 LICENSE | 4 MD5 | 62 +- NAMESPACE | 42 - NEWS.md | 82 +- R/CCplot.R | 218 +++---- R/HKnorm.R | 66 +- R/NanoStringQC.R | 144 ++-- R/check.R | 90 +-- R/data.R | 116 ++-- R/nanostringr-package.R | 8 R/read_rcc.R | 190 +++--- R/refMethod.R | 54 - R/utils.R | 4 build/vignette.rds |binary inst/CITATION | 38 - inst/doc/Overview.R | 298 +++++----- inst/doc/Overview.Rmd | 688 +++++++++++------------ inst/doc/Overview.html | 1069 +++++++++++++++---------------------- man/CCplot.Rd | 162 ++--- man/cohort.Rd | 124 ++-- man/expQC.Rd | 34 - man/nanostringr-package.Rd | 76 +- man/rcc.Rd | 124 ++-- tests/testthat.R | 8 tests/testthat/test-CCplot.R | 46 - tests/testthat/test-HKnorm.R | 22 tests/testthat/test-NanoStringQC.R | 90 +-- tests/testthat/test-order.R | 31 - tests/testthat/test-parse.R | 52 - tests/testthat/test-ratioMethod.R | 52 - vignettes/Overview.Rmd | 688 +++++++++++------------ 32 files changed, 2278 insertions(+), 2419 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-11-05 0.1.12
2017-01-25 0.1.6
Title: Hierarchical and Variation Partitioning for Canonical Analysis
Without Limits for the Number of Predictors (Matrices)
Description: This function conducts variation partitioning and hierarchical partitioning to calculate the unique, shared (referred as to "common") and independent contributions of each predictor (or matrix) to explained variation (R-squared and adjusted R-squared) on canonical analysis (RDA,CCA and db-RDA), applying the hierarchy algorithm of Chevan, A. and Sutherland, M. 1991 Hierarchical Partitioning.The American Statistician, 90-96 <DOI:10.1080/00031305.1991.10475776>.
Author: Jiangshan Lai,Pedro Peres-neto
Maintainer: Jiangshan Lai <lai@ibcas.ac.cn>
Diff between rdacca.hp versions 0.3.0 dated 2021-01-25 and 0.5-3 dated 2021-02-06
rdacca.hp-0.3.0/rdacca.hp/R/GMI.r |only rdacca.hp-0.3.0/rdacca.hp/R/creatbin.r |only rdacca.hp-0.3.0/rdacca.hp/R/genList.r |only rdacca.hp-0.3.0/rdacca.hp/R/rdacca.mhp.r |only rdacca.hp-0.3.0/rdacca.hp/man/GMI.Rd |only rdacca.hp-0.3.0/rdacca.hp/man/creatbin.Rd |only rdacca.hp-0.3.0/rdacca.hp/man/genList.Rd |only rdacca.hp-0.3.0/rdacca.hp/man/odd.Rd |only rdacca.hp-0.3.0/rdacca.hp/man/rdacca.mhp.Rd |only rdacca.hp-0.5-3/rdacca.hp/DESCRIPTION | 13 rdacca.hp-0.5-3/rdacca.hp/MD5 | 21 - rdacca.hp-0.5-3/rdacca.hp/NAMESPACE | 1 rdacca.hp-0.5-3/rdacca.hp/R/CanonicalFunctions.r | 32 +- rdacca.hp-0.5-3/rdacca.hp/R/rdacca.hp.r | 340 ++++++++++++++++++++--- rdacca.hp-0.5-3/rdacca.hp/man/Canonical.Rsq.Rd | 7 rdacca.hp-0.5-3/rdacca.hp/man/rdacca.hp.Rd | 38 +- 16 files changed, 380 insertions(+), 72 deletions(-)
Title: See a Forest for the Trees
Description: Get insight into a forest of classification trees, by calculating similarities between the trees, and subsequently clustering them. Each cluster is represented by it's most central cluster member. The package implements the methodology described in Sies & Van Mechelen (2020) <doi:10.1007/s00357-019-09350-4>.
Author: Aniek Sies [aut, cre],
Iven Van Mechelen [ths]
Maintainer: Aniek Sies <aniek.sies@kuleuven.be>
Diff between C443 versions 3.0.0 dated 2020-06-06 and 3.1.0 dated 2021-02-06
DESCRIPTION | 10 MD5 | 28 +- NAMESPACE | 14 - R/clusterMethods.R | 133 +++++++--- R/clusterforest.R | 449 +++++++++++++++++++--------------- R/treesourceClusterMethod.R | 34 +- man/clusterforest.Rd | 36 +- man/clusters.Rd |only man/clusters.clusterforest.Rd | 8 man/clusters.default.Rd |only man/medoidtrees.Rd |only man/medoidtrees.clusterforest.Rd | 6 man/medoidtrees.default.Rd |only man/plot.clusterforest.Rd | 7 man/treesimilarities.Rd |only man/treesimilarities.clusterforest.Rd | 6 man/treesimilarities.default.Rd |only man/treesource.Rd | 13 18 files changed, 462 insertions(+), 282 deletions(-)
Title: Query 'R' Data Frames with 'SQL'
Description: Use 'SQL' 'SELECT' statements to query 'R' data frames.
Author: Ian Cook [aut, cre],
Cloudera [cph]
Maintainer: Ian Cook <ianmcook@gmail.com>
Diff between tidyquery versions 0.2.1 dated 2020-05-09 and 0.2.2 dated 2021-02-06
DESCRIPTION | 15 ++++++++------- MD5 | 12 ++++++------ NAMESPACE | 1 + NEWS.md | 6 ++++++ R/compat.R | 4 ++++ README.md | 27 ++++++++++++++++++++------- tests/testthat/test-dtplyr.R | 12 ++++++++---- 7 files changed, 53 insertions(+), 24 deletions(-)
Title: Phylogenetic Comparative Tools for Missing Data and
Within-Species Variation
Description: Tools for performing phylogenetic comparative methods for datasets with with multiple observations per species (intraspecific variation or measurement error) and/or missing data (Goolsby et al. 2017). Performs ancestral state reconstruction and missing data imputation on the estimated evolutionary model, which can be specified as Brownian Motion, Ornstein-Uhlenbeck, Early-Burst, Pagel's lambda, kappa, or delta, or a star phylogeny.
Author: Eric W. Goolsby [aut, cre],
Jorn Bruggeman [aut],
Cecile Ane [aut]
Maintainer: Eric W. Goolsby <eric.goolsby.evolution@gmail.com>
Diff between Rphylopars versions 0.3.0 dated 2020-05-14 and 0.3.2 dated 2021-02-06
DESCRIPTION | 24 +++++++++++++++--------- MD5 | 10 +++++----- README.md | 10 ++++++---- man/Rphylopars-package.Rd | 10 +++++----- man/anc.recon.Rd | 4 +--- man/fast.SSC.Rd | 5 ----- 6 files changed, 32 insertions(+), 31 deletions(-)
Title: Shiny App. Idiograms with Marks and Karyotype Indices
Description: Plot idiograms of karyotypes, plasmids, circular chr. having a set of data.frames for chromosome data and optionally mark data. Two styles of chromosomes can be used: without or with visible chromatids (when not circular). Supports micrometers, cM and Mb or any unit. Two styles of centromeres are available: triangular and rounded; and six styles of marks: square (squareLeft), dots, cM (cMLeft), cenStyle, upArrow, downArrow; its legend (label) can be drawn inline or to the right of karyotypes. Idiograms can also be plotted in concentric circles. It is possible to calculate chromosome indices by Levan et al. (1964) <doi:10.1111/j.1601-5223.1964.tb01953.x>, karyotype indices of Watanabe et al. (1999) <doi:10.1007/PL00013869> and Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes by morphology Guerra (1986) and Levan et al. (1964).
Author: Fernando Roa [aut, cre],
Mariana PC Telles [ctb]
Maintainer: Fernando Roa <froao@unal.edu.co>
Diff between idiogramFISH versions 1.16.8 dated 2020-11-30 and 2.0.0 dated 2021-02-06
.Rinstignore |only DESCRIPTION | 14 MD5 | 90 + NAMESPACE | 4 NEWS.md | 16 R/addNotes.R | 16 R/armRatioCI.R | 2 R/genBankReadIF.R | 16 R/makeNumCols.R | 3 R/mapGGChr.R | 13 R/plotIdiograms.R | 292 ++++- R/runBoard.R |only README.md | 240 +++- build/vignette.rds |binary data/parentalAndHybChrSize.rda |binary data/traspaMarks.rda |binary data/traspadf.rda |binary inst/CITATION | 4 inst/doc/AVignette.html | 77 - inst/doc/index.R | 66 - inst/doc/index.Rmd | 159 +-- inst/doc/index.html | 1467 +++++++++++++++++------------- inst/shinyApps |only man/citrusSize.Rd | 128 +- man/figures/README-example-1.png |binary man/figures/README-example2-1.png |binary man/figures/README-unnamed-chunk-18-1.png |binary man/figures/README-unnamed-chunk-19-1.png |only man/figures/README-unnamed-chunk-20-1.png |only man/figures/README-unnamed-chunk-21-1.png |only man/figures/circular.png |binary man/figures/cranmanualbookdown.svg | 2 man/figures/cranversion.svg | 4 man/figures/develmanualvignette.svg | 2 man/figures/gitbadge.svg | 2 man/figures/logo.png |binary man/figures/logo2.png |binary man/figures/manual.svg | 2 man/figures/pkgdownver.svg | 2 man/figures/shiny.jpg |only man/idiogramFISH-package.Rd | 2 man/namesToColumns.Rd | 21 man/plotIdiograms.Rd | 240 +++- man/runBoard.Rd |only vignettes/index.Rmd | 159 +-- vignettes/refs/idiogramFISH.bib | 8 vignettes/refs/shinyApp.bib |only 47 files changed, 1923 insertions(+), 1128 deletions(-)
Title: Base de Datos de Facil Acceso del Censo 2017 de Chile (2017
Chilean Census Easy Access Database)
Description: Provee un acceso conveniente a mas de 17 millones de registros
de la base de datos del Censo 2017. Los datos fueron importados desde
el DVD oficial del INE usando el Convertidor REDATAM creado por Pablo De
Grande. Esta paquete esta documentado intencionalmente en castellano
asciificado para que funcione sin problema en diferentes plataformas.
(Provides convenient access to more than 17 million records from the
Chilean Census 2017 database. The datasets were imported from the official
DVD provided by the Chilean National Bureau of Statistics by using the
REDATAM converter created by Pablo De Grande and in addition it includes the
maps accompanying these datasets.)
Author: Mauricio Vargas [aut, cre] (<https://orcid.org/0000-0003-1017-7574>),
Juan Correa [ctb],
Instituto Nacional de Estadisticas (INE) [dtc]
Maintainer: Mauricio Vargas <mvargas@dcc.uchile.cl>
Diff between censo2017 versions 0.3.2 dated 2021-02-02 and 0.4 dated 2021-02-06
DESCRIPTION | 13 - MD5 | 45 ++-- NAMESPACE | 7 NEWS.md | 27 +- R/connect.R | 337 ++++++++++++++++++------------------ R/connection-pane.R | 172 +++++++++--------- R/download.R | 235 ++++++++++++++++--------- R/remove.R | 38 ++-- R/schema.R |only R/utils.R | 56 +++-- R/zzz.R | 40 +--- inst/WORDLIST | 92 ++++----- man/censo_bbdd.Rd | 60 +++--- man/censo_borrar_base.Rd | 36 +-- man/censo_descargar_base.Rd | 52 ++--- man/censo_desconectar_base.Rd | 28 +- man/censo_estado.Rd | 44 ++-- man/censo_panel.Rd | 30 +-- man/censo_tabla.Rd | 50 ++--- man/nivel_educacional_biobio.Rd | 58 +++--- tests/testthat.R | 6 tests/testthat/test-01-download.R | 28 +- tests/testthat/test-02-tables.R | 64 +++--- tests/testthat/test-03-connection.R | 38 ++-- 24 files changed, 808 insertions(+), 748 deletions(-)
Title: Functions for Working with Two- And Four-Parameter Beta
Probability Distributions
Description: Package providing a number of functions for working with Two- and
Four-parameter Beta distributions, including parameterization in terms of
moments, and fitting of Beta distributions to vectors of values. Also
includes functions for estimating classification accuracy, diagnostic
performance, and consistency, making use of what is generally known as the
'Livingston and Lewis approach' in the psychometric literature as the
foundational method, which makes extensive use of the Beta distribution. A
shiny application is available, providing a GUI for the Livingston and
Lewis approach. For link, see documentation for the LL.CA() function.
Livingston and Lewis (1995) <doi:10.1111/j.1745-3984.1995.tb00462.x>.
Hanson (1991) <https://files.eric.ed.gov/fulltext/ED344945.pdf>.
Tharwat (2020) <doi:10.1016/j.aci.2018.08.003>.
Author: Haakon Haakstad
Maintainer: Haakon Haakstad <h.t.haakstad@cemo.uio.no>
Diff between betafunctions versions 1.4.3 dated 2021-01-31 and 1.4.4 dated 2021-02-06
DESCRIPTION | 22 +++++++++++----------- MD5 | 10 +++++----- NEWS.md | 6 ++++++ R/classification.R | 27 +++++++++++++-------------- man/Beta.tp.fit.Rd | 3 --- man/caStats.Rd | 4 ++-- 6 files changed, 37 insertions(+), 35 deletions(-)
Title: An Arsenal of 'R' Functions for Large-Scale Statistical
Summaries
Description: An Arsenal of 'R' functions for large-scale statistical summaries,
which are streamlined to work within the latest reporting tools in 'R' and
'RStudio' and which use formulas and versatile summary statistics for summary
tables and models. The primary functions include tableby(), a Table-1-like
summary of multiple variable types 'by' the levels of one or more categorical
variables; paired(), a Table-1-like summary of multiple variable types paired across
two time points; modelsum(), which performs simple model fits on one or more endpoints
for many variables (univariate or adjusted for covariates);
freqlist(), a powerful frequency table across many categorical variables;
comparedf(), a function for comparing data.frames; and
write2(), a function to output tables to a document.
Author: Ethan Heinzen [aut, cre],
Jason Sinnwell [aut],
Elizabeth Atkinson [aut],
Tina Gunderson [aut],
Gregory Dougherty [aut],
Patrick Votruba [ctb],
Ryan Lennon [ctb],
Andrew Hanson [ctb],
Krista Goergen [ctb],
Emily Lundt [ctb],
Brendan Broderick [ctb],
Maddie McCullough [art]
Maintainer: Ethan Heinzen <heinzen.ethan@mayo.edu>
Diff between arsenal versions 3.5.0 dated 2020-07-13 and 3.6.1 dated 2021-02-06
DESCRIPTION | 16 MD5 | 124 +- NAMESPACE | 8 NEWS.md | 62 + R/arsenal_table.R | 6 R/as.data.frame.modelsum.R | 2 R/as.data.frame.tableby.R | 19 R/comparedf.internal.R | 19 R/comparedf.tolerances.R | 6 R/internal.functions.R | 13 R/modelsum.R | 9 R/modelsum.control.R | 30 R/modelsum.families.R | 8 R/modelsum.internal.R | 30 R/paired.R | 18 R/paired.control.R | 1 R/selectall.R |only R/summary.comparedf.R | 8 R/summary.freqlist.R | 4 R/summary.tableby.R | 12 R/tableby.R | 47 R/tableby.control.R | 55 R/tableby.internal.R | 5 R/tableby.stat.tests.R | 13 R/tableby.stats.R | 87 + R/write2.default.R | 1 R/yaml.R | 1 inst/doc/comparedf.html | 282 ++-- inst/doc/freqlist.html | 220 ++- inst/doc/labels.html | 174 ++ inst/doc/modelsum.R | 3 inst/doc/modelsum.Rmd | 5 inst/doc/modelsum.html | 1784 +++++++++++++++--------------- inst/doc/paired.html | 126 +- inst/doc/tableby.R | 6 inst/doc/tableby.Rmd | 18 inst/doc/tableby.html | 764 +++++++----- inst/doc/write2.Rmd | 5 inst/doc/write2.html | 383 +++--- man/diffs.Rd | 20 man/internal.functions.Rd | 4 man/modelsum.Rd | 3 man/modelsum.control.Rd | 3 man/modelsum.family.Rd | 3 man/paired.Rd | 2 man/selectall.Rd |only man/summary.freqlist.Rd | 3 man/summary.modelsum.Rd | 3 man/summary.tableby.Rd | 3 man/tableby.Rd | 5 man/tableby.control.Rd | 29 man/tableby.stats.Rd | 17 tests/testthat/test_comparedf.R | 14 tests/testthat/test_lhs_tableby.R | 129 ++ tests/testthat/test_modelsum.R | 19 tests/testthat/test_paired.R | 8 tests/testthat/test_tableby.R | 163 ++ tests/testthat/write2.freqlist.doc.Rmd | 1 tests/testthat/write2.modelsum.html.Rmd | 1 tests/testthat/write2.multititles.pdf.Rmd | 3 tests/testthat/write2.tableby.html.Rmd | 1 vignettes/modelsum.Rmd | 5 vignettes/tableby.Rmd | 18 vignettes/write2.Rmd | 5 64 files changed, 3052 insertions(+), 1784 deletions(-)
Title: Sparse Three-Dimensional Arrays and Linear Algebra Utilities
Description: Defines sparse three-dimensional arrays
and supports standard operations on them.
The package also includes utility functions for
matrix calculations that are common in
statistics, such as quadratic forms.
Author: Adrian Baddeley [aut, cre, cph]
(<https://orcid.org/0000-0001-9499-8382>),
Rolf Turner [aut, cph] (<https://orcid.org/0000-0001-5521-5218>),
Ege Rubak [aut, cph] (<https://orcid.org/0000-0002-6675-533X>)
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.sparse versions 1.2-0 dated 2021-01-08 and 1.2-1 dated 2021-02-06
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/sparsecommon.R | 13 ++++++++++--- inst/doc/packagesizes.txt | 1 + 4 files changed, 18 insertions(+), 10 deletions(-)
More information about spatstat.sparse at CRAN
Permanent link
Title: Statistical Methods for Regional Counts
Description: Implements statistical methods for analyzing the counts of areal data,
with a focus on the detection of spatial clusters and clustering. The package has a heavy emphasis on spatial scan methods, which were first introduced by Kulldorff and Nagarwalla (1995) <doi:10.1002/sim.4780140809> and Kulldorff (1997) <doi:10.1080/03610929708831995>.
Author: Joshua French [aut, cre] (<https://orcid.org/0000-0002-9708-3353>),
Mohammad Meysami [ctb] (<https://orcid.org/0000-0002-3322-5244>)
Maintainer: Joshua French <joshua.french@ucdenver.edu>
Diff between smerc versions 1.3.4 dated 2021-01-16 and 1.4 dated 2021-02-06
DESCRIPTION | 25 +- MD5 | 25 ++ NAMESPACE | 6 NEWS | 1 R/arg_check_functions.R | 66 ++++++- R/elbow_point.R |only R/optimal_ubpop-plot.R |only R/optimal_ubpop-print.R |only R/optimal_ubpop.R |only R/seq_scan_sim.R |only R/seq_scan_test.R |only inst/doc/smerc_demo.html | 331 +++++------------------------------- inst/testdata/pruned_seq.rda |only man/elbow_point.Rd |only man/optimal_ubpop.Rd |only man/plot.smerc_optimal_ubpop.Rd |only man/print.smerc_optimal_ubpop.Rd |only man/seq_scan_sim.Rd |only man/seq_scan_test.Rd |only tests/testthat/test-optimal_ubpop.R |only tests/testthat/test-seq_scan_test.R |only 21 files changed, 155 insertions(+), 299 deletions(-)
Title: Exact Sequential Analysis for Poisson and Binomial Data
Description: Functions to calculate exact critical values, statistical power, expected time to signal, and required sample sizes for performing exact sequential analysis. All these calculations can be done for either Poisson or binomial data, for continuous or group sequential analyses, and for different types of rejection boundaries. In case of group sequential analyses, the group sizes do not have to be specified in advance and the alpha spending can be arbitrarily settled.
Author: Ivair Ramos Silva and Martin Kulldorff
Maintainer: Ivair Ramos Silva <jamesivair@yahoo.com.br>
Diff between Sequential versions 3.2.1 dated 2020-12-17 and 3.3 dated 2021-02-06
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/Analyze.Poisson.R | 24 +++++++++++++----------- man/Analyze.Poisson.Rd | 6 +++--- man/Sequential-package.Rd | 8 ++++++-- 5 files changed, 30 insertions(+), 24 deletions(-)
Title: Wrap Vectors in Markdown Formatting
Description: Ease the transition between R vectors and markdown
text. With 'gluedown' and 'rmarkdown', users can create traditional
vectors in R, glue those strings together with the markdown syntax,
and print those formatted vectors directly to the document. This
package primarily uses GitHub Flavored Markdown (GFM), an offshoot of
the unambiguous CommonMark specification by John MacFarlane (2019)
<https://spec.commonmark.org/>.
Author: Kiernan Nicholls [aut, cre]
Maintainer: Kiernan Nicholls <kiernann@protonmail.com>
Diff between gluedown versions 1.0.2 dated 2020-01-14 and 1.0.3 dated 2021-02-06
gluedown-1.0.2/gluedown/R/md-reference.R |only gluedown-1.0.3/gluedown/DESCRIPTION | 16 gluedown-1.0.3/gluedown/MD5 | 113 gluedown-1.0.3/gluedown/NAMESPACE | 5 gluedown-1.0.3/gluedown/NEWS.md | 15 gluedown-1.0.3/gluedown/R/md-chunk.R | 1 gluedown-1.0.3/gluedown/R/md-convert.R | 6 gluedown-1.0.3/gluedown/R/md-heading.R | 2 gluedown-1.0.3/gluedown/R/md-issue.R | 6 gluedown-1.0.3/gluedown/R/md-link.R | 140 gluedown-1.0.3/gluedown/R/md-table.R | 6 gluedown-1.0.3/gluedown/R/utils.R |only gluedown-1.0.3/gluedown/README.md | 33 gluedown-1.0.3/gluedown/build/vignette.rds |binary gluedown-1.0.3/gluedown/inst/WORDLIST | 35 gluedown-1.0.3/gluedown/inst/doc/github-spec.R | 9 gluedown-1.0.3/gluedown/inst/doc/github-spec.Rmd | 9 gluedown-1.0.3/gluedown/inst/doc/github-spec.html | 1495 +++------- gluedown-1.0.3/gluedown/inst/doc/literal-programming.R | 16 gluedown-1.0.3/gluedown/inst/doc/literal-programming.Rmd | 18 gluedown-1.0.3/gluedown/inst/doc/literal-programming.html | 782 +---- gluedown-1.0.3/gluedown/man/has_knitr.Rd |only gluedown-1.0.3/gluedown/man/md_blank.Rd | 1 gluedown-1.0.3/gluedown/man/md_chunk.Rd | 2 gluedown-1.0.3/gluedown/man/md_fence.Rd | 1 gluedown-1.0.3/gluedown/man/md_heading.Rd | 1 gluedown-1.0.3/gluedown/man/md_image.Rd | 20 gluedown-1.0.3/gluedown/man/md_indent.Rd | 1 gluedown-1.0.3/gluedown/man/md_issue.Rd | 2 gluedown-1.0.3/gluedown/man/md_label.Rd |only gluedown-1.0.3/gluedown/man/md_link.Rd | 19 gluedown-1.0.3/gluedown/man/md_paragraph.Rd | 1 gluedown-1.0.3/gluedown/man/md_reference.Rd | 14 gluedown-1.0.3/gluedown/man/md_rule.Rd | 1 gluedown-1.0.3/gluedown/man/md_setext.Rd | 1 gluedown-1.0.3/gluedown/man/md_table.Rd | 1 gluedown-1.0.3/gluedown/man/pipe.Rd |only gluedown-1.0.3/gluedown/tests/testthat/test-4.1-thematic-breaks.R | 15 gluedown-1.0.3/gluedown/tests/testthat/test-4.10-tables.R | 65 gluedown-1.0.3/gluedown/tests/testthat/test-4.2-atx-headings.R | 15 gluedown-1.0.3/gluedown/tests/testthat/test-4.3-setext-headings.R | 15 gluedown-1.0.3/gluedown/tests/testthat/test-4.4-indented-code.R | 15 gluedown-1.0.3/gluedown/tests/testthat/test-4.5-fenced-code.R | 19 gluedown-1.0.3/gluedown/tests/testthat/test-4.7-link-references.R | 25 gluedown-1.0.3/gluedown/tests/testthat/test-4.8-paragraphs.R | 19 gluedown-1.0.3/gluedown/tests/testthat/test-4.9-blank-lines.R | 12 gluedown-1.0.3/gluedown/tests/testthat/test-5.1-block-quotes.R | 10 gluedown-1.0.3/gluedown/tests/testthat/test-5.3-task-list.R | 7 gluedown-1.0.3/gluedown/tests/testthat/test-5.4-lists.R | 7 gluedown-1.0.3/gluedown/tests/testthat/test-6.1-backslash-escape.R | 7 gluedown-1.0.3/gluedown/tests/testthat/test-6.11-disallow-raw-html.R | 30 gluedown-1.0.3/gluedown/tests/testthat/test-6.12-hard-line-breaks.R | 7 gluedown-1.0.3/gluedown/tests/testthat/test-6.14-textual-content.R | 2 gluedown-1.0.3/gluedown/tests/testthat/test-6.3-code-spans.R | 7 gluedown-1.0.3/gluedown/tests/testthat/test-6.6-links.R | 61 gluedown-1.0.3/gluedown/tests/testthat/test-6.7-images.R | 20 gluedown-1.0.3/gluedown/tests/testthat/test-6.8-autolinks.R | 2 gluedown-1.0.3/gluedown/tests/testthat/test-generic-functions.R | 17 gluedown-1.0.3/gluedown/vignettes/github-spec.Rmd | 9 gluedown-1.0.3/gluedown/vignettes/literal-programming.Rmd | 18 60 files changed, 1352 insertions(+), 1824 deletions(-)
Title: Data for "Forecasting: Principles and Practice" (3rd Edition)
Description: All data sets required for the examples and exercises in the book
"Forecasting: principles and practice" by Rob J Hyndman and George Athanasopoulos
<https://OTexts.com/fpp3/>. All packages required to run the examples are also
loaded.
Author: Rob Hyndman [aut, cre, cph] (<https://orcid.org/0000-0002-2140-5352>),
George Athanasopoulos [ctb],
Mitchell O'Hara-Wild [ctb],
RStudio [cph]
Maintainer: Rob Hyndman <Rob.Hyndman@monash.edu>
Diff between fpp3 versions 0.3 dated 2020-06-07 and 0.4.0 dated 2021-02-06
DESCRIPTION | 20 +++++----- MD5 | 22 ++++++++--- NEWS.md | 9 ++++ R/data.R | 86 +++++++++++++++++++++++++++++++++++++++++++++ README.md | 50 ++++++++++++++------------ data/aus_accommodation.rda |only data/aus_airpassengers.rda |binary data/bank_calls.rda |only data/insurance.rda |only data/prices.rda |only data/souvenirs.rda |only man/aus_accommodation.Rd |only man/bank_calls.Rd |only man/fpp3-package.Rd | 4 +- man/insurance.Rd |only man/prices.Rd |only man/souvenirs.Rd |only 17 files changed, 149 insertions(+), 42 deletions(-)
Title: Tools for Storing, Restoring and Searching for R Objects
Description: Data exploration and modelling is a process in which a lot of data
artifacts are produced. Artifacts like: subsets, data aggregates, plots,
statistical models, different versions of data sets and different versions
of results. The more projects we work with the more artifacts are produced
and the harder it is to manage these artifacts. Archivist helps to store
and manage artifacts created in R. Archivist allows you to store selected
artifacts as a binary files together with their metadata and relations.
Archivist allows to share artifacts with others, either through shared
folder or github. Archivist allows to look for already created artifacts by
using it's class, name, date of the creation or other properties. Makes it
easy to restore such artifacts. Archivist allows to check if new artifact
is the exact copy that was produced some time ago. That might be useful
either for testing or caching.
Author: Przemyslaw Biecek [aut, cre],
Marcin Kosinski [aut],
Witold Chodor [ctb]
Maintainer: Przemyslaw Biecek <przemyslaw.biecek@gmail.com>
Diff between archivist versions 2.3.4 dated 2019-08-31 and 2.3.5 dated 2021-02-06
DESCRIPTION | 10 MD5 | 118 ++--- NAMESPACE | 166 ++++---- NEWS.md | 466 +++++++++++------------ R/addArchivistHooks.R | 2 R/ahistory.R | 367 +++++++++--------- R/alink.R | 4 R/archivist-package.R | 167 ++++---- R/aread.R | 18 R/atrace.R | 71 +-- R/deleteRepo.R | 2 R/magrittr.R | 2 R/saveToRepo.R | 554 +++++++++++++-------------- R/zipRepo.R | 1 build/vignette.rds |binary inst/doc/accessibility.R | 178 ++++---- inst/doc/accessibility.html | 636 +++++++++++++++---------------- inst/doc/caching.R | 116 ++--- inst/doc/caching.html | 598 ++++++++++++++--------------- inst/doc/chaining.R | 182 ++++----- inst/doc/chaining.html | 730 ++++++++++++++++++------------------ inst/doc/posts.html | 396 +++++++++---------- man/Repository.Rd | 262 ++++++------- man/Tags.Rd | 886 ++++++++++++++++++++++---------------------- man/addHooksToPrint.Rd | 207 +++++----- man/addTagsRepo.Rd | 284 +++++++------- man/aformat.Rd | 166 ++++---- man/ahistory.Rd | 268 +++++++------ man/alink.Rd | 220 +++++----- man/archivist-package.Rd | 181 ++++---- man/archivistOptions.Rd | 306 +++++++-------- man/aread.Rd | 189 ++++----- man/areadLocal.Rd | 140 +++--- man/asearch.Rd | 327 ++++++++-------- man/asearchLocal.Rd | 153 ++++--- man/asession.Rd | 167 ++++---- man/atrace.Rd | 158 ++++--- man/cache.Rd | 273 +++++++------ man/copyToRepo.Rd | 392 ++++++++++--------- man/createEmptyRepo.Rd | 398 ++++++++++--------- man/createMDGallery.Rd | 229 ++++++----- man/deleteLocalRepo.Rd | 254 ++++++------ man/getRemoteHook.Rd | 161 ++++--- man/getTags.Rd | 437 +++++++++++---------- man/loadFromRepo.Rd | 470 ++++++++++++----------- man/magrittr.Rd | 214 +++++----- man/md5hash.Rd | 187 ++++----- man/pipe.Rd | 24 - man/removeTagsRepo.Rd | 196 +++++---- man/restoreLibs.Rd | 179 ++++---- man/rmFromLocalRepo.Rd | 811 ++++++++++++++++++++-------------------- man/saveToRepo.Rd | 482 +++++++++++++---------- man/searchInRepo.Rd | 502 +++++++++++++----------- man/setRepo.Rd | 475 ++++++++++++----------- man/shinySearchInRepo.Rd | 207 +++++----- man/showRepo.Rd | 321 ++++++++------- man/splitTags.Rd | 272 +++++++------ man/summaryRepo.Rd | 233 ++++++----- man/zipRepo.Rd | 373 ++++++++++-------- vignettes/posts.Rmd | 62 +-- 60 files changed, 8263 insertions(+), 7587 deletions(-)