Title: Modelling Pathways and Movement Potential Within a Landscape
(Version 1.8.0)
Description: Provides functionality to calculate cost surfaces based on slope (e.g. Herzog, 2010; Llobera and Sluckin, 2007 <doi:10.1016/j.jtbi.2007.07.020>; París Roche, 2002; Tobler, 1993), traversing slope (Bell and Lock, 2000), and landscape features (Llobera, 2000) to be used when modelling pathways and movement potential within a landscape (e.g. Llobera, 2015; Verhagen, 2013; White and Barber, 2012 <doi:10.1016/j.jas.2012.04.017>).
Author: Joseph Lewis [aut, cre]
Maintainer: Joseph Lewis <josephlewis1992@gmail.com>
Diff between leastcostpath versions 1.7.4 dated 2020-07-17 and 1.8.0 dated 2021-02-11
leastcostpath-1.7.4/leastcostpath/inst/doc/leastcostpath-2.R |only leastcostpath-1.7.4/leastcostpath/inst/doc/leastcostpath-2.Rmd |only leastcostpath-1.7.4/leastcostpath/inst/doc/leastcostpath-2.html |only leastcostpath-1.7.4/leastcostpath/vignettes/leastcostpath-2.Rmd |only leastcostpath-1.8.0/leastcostpath/DESCRIPTION | 18 leastcostpath-1.8.0/leastcostpath/MD5 | 92 leastcostpath-1.8.0/leastcostpath/NAMESPACE | 3 leastcostpath-1.8.0/leastcostpath/NEWS.md | 41 leastcostpath-1.8.0/leastcostpath/R/PDI_validation.R | 113 - leastcostpath-1.8.0/leastcostpath/R/add_dem_error.R | 61 leastcostpath-1.8.0/leastcostpath/R/calculate_slope.R | 16 leastcostpath-1.8.0/leastcostpath/R/cost.R | 116 - leastcostpath-1.8.0/leastcostpath/R/create_CCP_lcps.R | 100 leastcostpath-1.8.0/leastcostpath/R/create_FETE_lcps.R | 66 leastcostpath-1.8.0/leastcostpath/R/create_banded_lcps.R | 122 - leastcostpath-1.8.0/leastcostpath/R/create_barrier_cs.R | 102 leastcostpath-1.8.0/leastcostpath/R/create_distance_cs.R |only leastcostpath-1.8.0/leastcostpath/R/create_feature_cs.R | 2 leastcostpath-1.8.0/leastcostpath/R/create_lcp.R | 6 leastcostpath-1.8.0/leastcostpath/R/create_lcp_density.R | 4 leastcostpath-1.8.0/leastcostpath/R/create_lcp_network.R | 62 leastcostpath-1.8.0/leastcostpath/R/create_slope_cs.R | 87 leastcostpath-1.8.0/leastcostpath/R/create_stochastic_lcp.R | 48 leastcostpath-1.8.0/leastcostpath/R/create_traversal_cs.R | 70 leastcostpath-1.8.0/leastcostpath/R/create_wide_lcp.R | 34 leastcostpath-1.8.0/leastcostpath/R/crop_cs.R | 54 leastcostpath-1.8.0/leastcostpath/R/neighbours.R | 13 leastcostpath-1.8.0/leastcostpath/R/transitions.R |only leastcostpath-1.8.0/leastcostpath/README.md | 174 - leastcostpath-1.8.0/leastcostpath/build/partial.rdb |only leastcostpath-1.8.0/leastcostpath/build/vignette.rds |binary leastcostpath-1.8.0/leastcostpath/inst/doc/leastcostpath-1.R | 193 - leastcostpath-1.8.0/leastcostpath/inst/doc/leastcostpath-1.Rmd | 252 +- leastcostpath-1.8.0/leastcostpath/inst/doc/leastcostpath-1.html | 1099 +++++----- leastcostpath-1.8.0/leastcostpath/man/PDI_validation.Rd | 98 leastcostpath-1.8.0/leastcostpath/man/add_dem_error.Rd | 126 - leastcostpath-1.8.0/leastcostpath/man/cost_matrix.Rd | 80 leastcostpath-1.8.0/leastcostpath/man/create_CCP_lcps.Rd | 2 leastcostpath-1.8.0/leastcostpath/man/create_FETE_lcps.Rd | 2 leastcostpath-1.8.0/leastcostpath/man/create_banded_lcps.Rd | 14 leastcostpath-1.8.0/leastcostpath/man/create_barrier_cs.Rd | 28 leastcostpath-1.8.0/leastcostpath/man/create_distance_cs.Rd |only leastcostpath-1.8.0/leastcostpath/man/create_lcp.Rd | 6 leastcostpath-1.8.0/leastcostpath/man/create_lcp_density.Rd | 4 leastcostpath-1.8.0/leastcostpath/man/create_slope_cs.Rd | 119 - leastcostpath-1.8.0/leastcostpath/man/create_stochastic_lcp.Rd | 2 leastcostpath-1.8.0/leastcostpath/man/create_wide_lcp.Rd | 2 leastcostpath-1.8.0/leastcostpath/man/crop_cs.Rd | 82 leastcostpath-1.8.0/leastcostpath/man/neighbours_32.Rd | 2 leastcostpath-1.8.0/leastcostpath/man/neighbours_48.Rd | 2 leastcostpath-1.8.0/leastcostpath/vignettes/leastcostpath-1.Rmd | 252 +- 51 files changed, 2113 insertions(+), 1656 deletions(-)
Title: Conditional Permutation Importance
Description: An add-on to the 'party' package, with a faster implementation
of the partial-conditional permutation importance for random forests. The
standard permutation importance is implemented exactly the same as in
the 'party' package. The conditional permutation importance can be
computed faster, with an option to be backward compatible to the 'party'
implementation. The package is compatible with random forests fit using the
'party' and the 'randomForest' package. The methods are described in
Strobl et al. (2007) <doi:10.1186/1471-2105-8-25> and
Debeer and Strobl (2020) <doi:10.1186/s12859-020-03622-2>.
Author: Dries Debeer [aut, cre],
Torsten Hothorn [aut],
Carolin Strobl [aut]
Maintainer: Dries Debeer <debeer.dries@gmail.com>
Diff between permimp versions 1.0-0 dated 2020-06-25 and 1.0-1 dated 2021-02-11
DESCRIPTION | 10 MD5 | 21 NEWS.md | 7 R/Utils.R | 53 +- R/doPermimp.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/permimp-package.Rmd | 2 inst/doc/permimp-package.html | 1052 ++++++++++++++++++++++-------------------- man/permimp.Rd | 14 tests/testthat/Rplots.pdf |only vignettes/permimp-package.Rmd | 2 12 files changed, 645 insertions(+), 518 deletions(-)
Title: A Unified Framework for Random Forest Prediction Error
Estimation
Description: Estimates the conditional error distributions of random forest
predictions and common parameters of those distributions, including
conditional mean squared prediction errors, conditional biases, and
conditional quantiles, by out-of-bag weighting of out-of-bag prediction
errors as proposed by Lu and Hardin (2021). This package is compatible
with several existing packages that implement random forests in R.
Author: Benjamin Lu and Johanna Hardin
Maintainer: Benjamin Lu <b.lu@berkeley.edu>
Diff between forestError versions 0.2.0 dated 2020-04-02 and 1.0.0 dated 2021-02-11
DESCRIPTION | 11 +++++------ MD5 | 10 +++++----- NEWS.md | 10 +++++++--- R/quantforesterror.R | 8 ++++---- README.md | 8 ++++++-- inst/CITATION | 9 ++++++--- 6 files changed, 33 insertions(+), 23 deletions(-)
Title: Wraps 'CCM' with Utility Functions
Description: Provides a set of functions to perform queries against the 'CCM' API <https://mohcontacttracing.my.salesforce.com>.
Author: James Lane [aut, cre]
Maintainer: James Lane <lanejames35@gmail.com>
Diff between ccmReportR versions 0.0.3 dated 2021-01-26 and 0.1.0 dated 2021-02-11
DESCRIPTION | 8 ++++---- MD5 | 38 ++++++++++++++++++++------------------ NAMESPACE | 1 + NEWS.md | 7 +++++++ R/getAttribute.R | 2 +- R/getCaseAttribute.R | 2 +- R/getCases.R | 39 +++++++++++++++++++++------------------ R/getDBLabels.R |only R/getExposures.R | 21 ++++++++++++--------- R/getOutbreakAttribute.R | 2 +- R/getOutbreaks.R | 22 +++++++++++++--------- R/makeTimestamp.R | 2 +- README.md | 30 ++++++++++++++++-------------- man/getAttribute.Rd | 2 +- man/getCaseAttribute.Rd | 2 +- man/getCases.Rd | 13 +++++++------ man/getDBLabels.Rd |only man/getExposures.Rd | 11 ++++++----- man/getOutbreakAttribute.Rd | 2 +- man/getOutbreaks.Rd | 21 ++++++++++++++++++++- man/makeTimestamp.Rd | 2 +- 21 files changed, 135 insertions(+), 92 deletions(-)
Title: Calculating Bilateral and Multilateral Price Indexes
Description: Preparing a scanner data set for price dynamics calculations (data selecting, data classification, data matching, data filtering). Computing bilateral and multilateral indexes. For details on these methods see: de Haan and Krsinich (2017) <doi:10.1111/roiw.12304> and Diewert and Fox (2020)
<doi:10.1080/07350015.2020.1816176>.
Author: Jacek Białek [aut, cre] (<https://orcid.org/0000-0002-0952-5327>)
Maintainer: Jacek Białek <jacek.bialek@uni.lodz.pl>
Diff between PriceIndices versions 0.0.1 dated 2021-02-01 and 0.0.2 dated 2021-02-11
PriceIndices-0.0.1/PriceIndices/man/figures/README-unnamed-chunk-12-1.png |only PriceIndices-0.0.1/PriceIndices/man/figures/README-unnamed-chunk-13-1.png |only PriceIndices-0.0.1/PriceIndices/man/figures/README-unnamed-chunk-26-1.png |only PriceIndices-0.0.1/PriceIndices/man/figures/README-unnamed-chunk-32-1.png |only PriceIndices-0.0.1/PriceIndices/man/figures/README-unnamed-chunk-36-1.png |only PriceIndices-0.0.1/PriceIndices/man/figures/README-unnamed-chunk-51-1.png |only PriceIndices-0.0.1/PriceIndices/man/figures/README-unnamed-chunk-55-1.png |only PriceIndices-0.0.2/PriceIndices/DESCRIPTION | 8 PriceIndices-0.0.2/PriceIndices/MD5 | 121 ++++----- PriceIndices-0.0.2/PriceIndices/NAMESPACE | 2 PriceIndices-0.0.2/PriceIndices/NEWS.md | 19 + PriceIndices-0.0.2/PriceIndices/R/PriceIndices.R | 6 PriceIndices-0.0.2/PriceIndices/R/dataU.R |only PriceIndices-0.0.2/PriceIndices/R/functions.R | 130 +++++----- PriceIndices-0.0.2/PriceIndices/R/functions_ML.R | 6 PriceIndices-0.0.2/PriceIndices/R/functions_internal.R | 84 +++++- PriceIndices-0.0.2/PriceIndices/R/functions_new.R | 109 ++++++++ PriceIndices-0.0.2/PriceIndices/README.md | 95 +++++-- PriceIndices-0.0.2/PriceIndices/data/dataU.rda |only PriceIndices-0.0.2/PriceIndices/inst/doc/PriceIndices.R | 9 PriceIndices-0.0.2/PriceIndices/inst/doc/PriceIndices.Rmd | 31 ++ PriceIndices-0.0.2/PriceIndices/inst/doc/PriceIndices.html | 15 + PriceIndices-0.0.2/PriceIndices/man/PriceIndices.Rd | 6 PriceIndices-0.0.2/PriceIndices/man/chagmean.Rd | 2 PriceIndices-0.0.2/PriceIndices/man/chbanajree.Rd | 2 PriceIndices-0.0.2/PriceIndices/man/chbialek.Rd | 2 PriceIndices-0.0.2/PriceIndices/man/chbmw.Rd | 2 PriceIndices-0.0.2/PriceIndices/man/chcarli.Rd | 2 PriceIndices-0.0.2/PriceIndices/man/chcswd.Rd | 2 PriceIndices-0.0.2/PriceIndices/man/chdavies.Rd | 2 PriceIndices-0.0.2/PriceIndices/man/chdrobisch.Rd | 2 PriceIndices-0.0.2/PriceIndices/man/chdutot.Rd | 2 PriceIndices-0.0.2/PriceIndices/man/chfisher.Rd | 2 PriceIndices-0.0.2/PriceIndices/man/chgeary_khamis.Rd | 2 PriceIndices-0.0.2/PriceIndices/man/chgeolaspeyres.Rd | 2 PriceIndices-0.0.2/PriceIndices/man/chgeolowe.Rd | 2 PriceIndices-0.0.2/PriceIndices/man/chgeopaasche.Rd | 2 PriceIndices-0.0.2/PriceIndices/man/chgeoyoung.Rd | 2 PriceIndices-0.0.2/PriceIndices/man/chharmonic.Rd | 2 PriceIndices-0.0.2/PriceIndices/man/chjevons.Rd | 2 PriceIndices-0.0.2/PriceIndices/man/chlaspeyres.Rd | 2 PriceIndices-0.0.2/PriceIndices/man/chlehr.Rd | 2 PriceIndices-0.0.2/PriceIndices/man/chlloyd_moulton.Rd | 2 PriceIndices-0.0.2/PriceIndices/man/chlowe.Rd | 2 PriceIndices-0.0.2/PriceIndices/man/chmarshall_edgeworth.Rd | 2 PriceIndices-0.0.2/PriceIndices/man/chpaasche.Rd | 2 PriceIndices-0.0.2/PriceIndices/man/chpalgrave.Rd | 2 PriceIndices-0.0.2/PriceIndices/man/chsato_vartia.Rd | 2 PriceIndices-0.0.2/PriceIndices/man/chstuvel.Rd | 2 PriceIndices-0.0.2/PriceIndices/man/chtornqvist.Rd | 2 PriceIndices-0.0.2/PriceIndices/man/chvartia.Rd | 2 PriceIndices-0.0.2/PriceIndices/man/chwalsh.Rd | 2 PriceIndices-0.0.2/PriceIndices/man/chyoung.Rd | 2 PriceIndices-0.0.2/PriceIndices/man/dataU.Rd |only PriceIndices-0.0.2/PriceIndices/man/data_norm.Rd |only PriceIndices-0.0.2/PriceIndices/man/data_preparing.Rd | 8 PriceIndices-0.0.2/PriceIndices/man/data_selecting.Rd | 2 PriceIndices-0.0.2/PriceIndices/man/data_unit.Rd |only PriceIndices-0.0.2/PriceIndices/man/figures/README-unnamed-chunk-14-1.png |only PriceIndices-0.0.2/PriceIndices/man/figures/README-unnamed-chunk-15-1.png |only PriceIndices-0.0.2/PriceIndices/man/figures/README-unnamed-chunk-27-1.png |only PriceIndices-0.0.2/PriceIndices/man/figures/README-unnamed-chunk-33-1.png |binary PriceIndices-0.0.2/PriceIndices/man/figures/README-unnamed-chunk-34-1.png |binary PriceIndices-0.0.2/PriceIndices/man/figures/README-unnamed-chunk-35-1.png |only PriceIndices-0.0.2/PriceIndices/man/figures/README-unnamed-chunk-37-1.png |only PriceIndices-0.0.2/PriceIndices/man/figures/README-unnamed-chunk-52-1.png |binary PriceIndices-0.0.2/PriceIndices/man/figures/README-unnamed-chunk-53-1.png |binary PriceIndices-0.0.2/PriceIndices/man/figures/README-unnamed-chunk-54-1.png |only PriceIndices-0.0.2/PriceIndices/man/figures/README-unnamed-chunk-56-1.png |only PriceIndices-0.0.2/PriceIndices/man/model_classification.Rd | 2 PriceIndices-0.0.2/PriceIndices/vignettes/PriceIndices.Rmd | 31 ++ 71 files changed, 552 insertions(+), 192 deletions(-)
Title: Tools for Cluster Analysis
Description: Cluster analysis is one of the most fundamental problems in data science. We provide a variety of algorithms from clustering to the learning on the space of partitions. See Hennig, Meila, and Rocci (2016, ISBN:9781466551886) for general exposition to cluster analysis.
Author: Kisung You [aut, cre] (<https://orcid.org/0000-0002-8584-459X>)
Maintainer: Kisung You <kyoustat@gmail.com>
Diff between T4cluster versions 0.1.0 dated 2020-09-23 and 0.1.1 dated 2021-02-11
T4cluster-0.1.0/T4cluster/inst/WORDLIST |only T4cluster-0.1.0/T4cluster/src/algorithms_spectral.cpp |only T4cluster-0.1.1/T4cluster/DESCRIPTION | 10 T4cluster-0.1.1/T4cluster/MD5 | 102 - T4cluster-0.1.1/T4cluster/NAMESPACE | 39 T4cluster-0.1.1/T4cluster/NEWS.md | 4 T4cluster-0.1.1/T4cluster/R/RcppExports.R | 120 + T4cluster-0.1.1/T4cluster/R/algorithm_dpmeans.R |only T4cluster-0.1.1/T4cluster/R/algorithm_gmm.R |only T4cluster-0.1.1/T4cluster/R/algorithm_gmm11R.R |only T4cluster-0.1.1/T4cluster/R/algorithm_gmm16G.R |only T4cluster-0.1.1/T4cluster/R/algorithm_kmeans.R | 4 T4cluster-0.1.1/T4cluster/R/algorithm_kmeans18B.R |only T4cluster-0.1.1/T4cluster/R/algorithm_kmeanspp.R | 2 T4cluster-0.1.1/T4cluster/R/algorithm_sc05Z.R | 2 T4cluster-0.1.1/T4cluster/R/algorithm_scNJW.R | 2 T4cluster-0.1.1/T4cluster/R/algorithm_scSM.R | 2 T4cluster-0.1.1/T4cluster/R/algorithm_scUL.R | 2 T4cluster-0.1.1/T4cluster/R/auxiliary.R | 113 + T4cluster-0.1.1/T4cluster/R/auxiliary_functional.R |only T4cluster-0.1.1/T4cluster/R/comparison_adjrand.R |only T4cluster-0.1.1/T4cluster/R/comparison_rand.R |only T4cluster-0.1.1/T4cluster/R/functional_hclust.R |only T4cluster-0.1.1/T4cluster/R/functional_kmeans03A.R |only T4cluster-0.1.1/T4cluster/R/package-T4cluster.R | 25 T4cluster-0.1.1/T4cluster/R/subspace_EKSS.R |only T4cluster-0.1.1/T4cluster/R/subspace_LRR.R |only T4cluster-0.1.1/T4cluster/R/subspace_LRSC.R |only T4cluster-0.1.1/T4cluster/R/subspace_LSR.R |only T4cluster-0.1.1/T4cluster/R/subspace_MSM.R |only T4cluster-0.1.1/T4cluster/R/subspace_SSC.R |only T4cluster-0.1.1/T4cluster/R/subspace_SSQP.R |only T4cluster-0.1.1/T4cluster/R/utility_gen3S.R |only T4cluster-0.1.1/T4cluster/R/utility_genLP.R |only T4cluster-0.1.1/T4cluster/R/utility_gensmiley.R |only T4cluster-0.1.1/T4cluster/README.md | 57 T4cluster-0.1.1/T4cluster/build/partial.rdb |binary T4cluster-0.1.1/T4cluster/inst/REFERENCES.bib | 743 +++++++--- T4cluster-0.1.1/T4cluster/man/EKSS.Rd |only T4cluster-0.1.1/T4cluster/man/LRR.Rd |only T4cluster-0.1.1/T4cluster/man/LRSC.Rd |only T4cluster-0.1.1/T4cluster/man/LSR.Rd |only T4cluster-0.1.1/T4cluster/man/MSM.Rd |only T4cluster-0.1.1/T4cluster/man/SSC.Rd |only T4cluster-0.1.1/T4cluster/man/SSQP.Rd |only T4cluster-0.1.1/T4cluster/man/compare.adjrand.Rd |only T4cluster-0.1.1/T4cluster/man/compare.rand.Rd |only T4cluster-0.1.1/T4cluster/man/dpmeans.Rd |only T4cluster-0.1.1/T4cluster/man/figures/README-unnamed-chunk-2-1.png |only T4cluster-0.1.1/T4cluster/man/figures/README-unnamed-chunk-3-1.png |only T4cluster-0.1.1/T4cluster/man/funhclust.Rd |only T4cluster-0.1.1/T4cluster/man/funkmeans03A.Rd |only T4cluster-0.1.1/T4cluster/man/gen3S.Rd |only T4cluster-0.1.1/T4cluster/man/genLP.Rd |only T4cluster-0.1.1/T4cluster/man/gensmiley.Rd |only T4cluster-0.1.1/T4cluster/man/gmm.Rd |only T4cluster-0.1.1/T4cluster/man/gmm11R.Rd |only T4cluster-0.1.1/T4cluster/man/gmm16G.Rd |only T4cluster-0.1.1/T4cluster/man/kmeans.Rd | 2 T4cluster-0.1.1/T4cluster/man/kmeans18B.Rd |only T4cluster-0.1.1/T4cluster/man/kmeanspp.Rd | 2 T4cluster-0.1.1/T4cluster/man/predict.MSM.Rd |only T4cluster-0.1.1/T4cluster/man/sc05Z.Rd | 2 T4cluster-0.1.1/T4cluster/man/scNJW.Rd | 2 T4cluster-0.1.1/T4cluster/man/scSM.Rd | 2 T4cluster-0.1.1/T4cluster/man/scUL.Rd | 2 T4cluster-0.1.1/T4cluster/src/Makevars | 1 T4cluster-0.1.1/T4cluster/src/Makevars.win | 2 T4cluster-0.1.1/T4cluster/src/RcppExports.cpp | 432 +++++ T4cluster-0.1.1/T4cluster/src/src_coresets.cpp |only T4cluster-0.1.1/T4cluster/src/src_functional.cpp |only T4cluster-0.1.1/T4cluster/src/src_gauss.cpp |only T4cluster-0.1.1/T4cluster/src/src_gmm.cpp |only T4cluster-0.1.1/T4cluster/src/src_spectral.cpp |only T4cluster-0.1.1/T4cluster/src/src_subspace.cpp |only T4cluster-0.1.1/T4cluster/src/utilities.cpp | 228 ++- T4cluster-0.1.1/T4cluster/src/utilities.h | 37 77 files changed, 1669 insertions(+), 270 deletions(-)
Title: Abstractions for Promise-Based Asynchronous Programming
Description: Provides fundamental abstractions for doing asynchronous programming
in R using promises. Asynchronous programming is useful for allowing a single
R process to orchestrate multiple tasks in the background while also attending
to something else. Semantics are similar to 'JavaScript' promises, but with a
syntax that is idiomatic R.
Author: Joe Cheng [aut, cre],
RStudio [cph, fnd]
Maintainer: Joe Cheng <joe@rstudio.com>
Diff between promises versions 1.1.1 dated 2020-06-09 and 1.2.0.1 dated 2021-02-11
DESCRIPTION | 14 MD5 | 91 +- NAMESPACE | 2 NEWS.md | 8 R/future_promise.R |only R/is_something.R | 11 R/pipe.R | 4 R/promise.R | 6 R/utils.R | 8 README.md | 2 build/vignette.rds |binary inst/WORDLIST |only inst/doc/casestudy.Rmd | 58 - inst/doc/casestudy.html | 1351 +++++++++++++++---------------- inst/doc/combining.Rmd | 25 inst/doc/combining.html | 734 +++++++++------- inst/doc/future_promise.R |only inst/doc/future_promise.Rmd |only inst/doc/future_promise.html |only inst/doc/futures.Rmd | 13 inst/doc/futures.html | 539 ++++++++---- inst/doc/intro.Rmd | 8 inst/doc/intro.html | 875 +++++++++----------- inst/doc/motivation.Rmd | 2 inst/doc/motivation.html | 384 +++++--- inst/doc/overview.Rmd | 22 inst/doc/overview.html | 894 ++++++++++---------- inst/doc/shiny.Rmd | 57 - inst/doc/shiny.html | 941 ++++++++++++--------- man/WorkQueue.Rd |only man/figures |only man/future_promise.Rd |only man/is.promise.Rd | 2 man/pipes.Rd | 4 man/reexports.Rd | 2 tests/spelling.R |only tests/testthat/common.R | 8 tests/testthat/test-methods.R | 20 tests/testthat/test-visibility.R |only tests/testthat/test-zzz-future_promise.R |only vignettes/casestudy.Rmd | 58 - vignettes/combining.Rmd | 25 vignettes/future_promise |only vignettes/future_promise.Rmd |only vignettes/futures.Rmd | 13 vignettes/intro.Rmd | 8 vignettes/motivation.Rmd | 2 vignettes/overview.Rmd | 22 vignettes/shiny.Rmd | 57 - 49 files changed, 3448 insertions(+), 2822 deletions(-)
Title: Manipulate MCMC Samples
Description: Functions and classes to store, manipulate and
summarise Monte Carlo Markov Chain (MCMC) samples. For more
information see Brooks et al. (2011) <isbn:978-1-4200-7941-8>.
Author: Joe Thorley [aut, cre] (<https://orcid.org/0000-0002-7683-4592>),
Poisson Consulting [cph, fnd]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between mcmcr versions 0.4.0 dated 2020-09-27 and 0.5.0 dated 2021-02-11
mcmcr-0.4.0/mcmcr/man/as_nlists.mcmc.list.Rd |only mcmcr-0.4.0/mcmcr/man/tidy.mcmc.mcmcr.Rd |only mcmcr-0.5.0/mcmcr/DESCRIPTION | 12 ++-- mcmcr-0.5.0/mcmcr/MD5 | 50 +++++++++----------- mcmcr-0.5.0/mcmcr/NAMESPACE | 3 - mcmcr-0.5.0/mcmcr/NEWS.md | 8 +++ mcmcr-0.5.0/mcmcr/R/as-nlists.R | 11 ---- mcmcr-0.5.0/mcmcr/R/coef.R | 54 +++++++++++++++------- mcmcr-0.5.0/mcmcr/R/estimates.R | 24 +++++---- mcmcr-0.5.0/mcmcr/R/internal.R | 4 - mcmcr-0.5.0/mcmcr/R/tidy.R | 6 +- mcmcr-0.5.0/mcmcr/README.md | 24 ++++----- mcmcr-0.5.0/mcmcr/build/mcmcr.pdf |binary mcmcr-0.5.0/mcmcr/inst/WORDLIST | 20 ++++---- mcmcr-0.5.0/mcmcr/man/as_nlists.mcmcr.Rd | 2 mcmcr-0.5.0/mcmcr/man/coef.Rd | 8 ++- mcmcr-0.5.0/mcmcr/man/estimates.mcarray.Rd | 2 mcmcr-0.5.0/mcmcr/man/estimates.mcmc.Rd | 2 mcmcr-0.5.0/mcmcr/man/estimates.mcmc.list.Rd | 2 mcmcr-0.5.0/mcmcr/man/estimates.mcmcarray.Rd | 2 mcmcr-0.5.0/mcmcr/man/estimates.mcmcr.Rd | 2 mcmcr-0.5.0/mcmcr/tests/testthat/test-as-mcmcr.R | 2 mcmcr-0.5.0/mcmcr/tests/testthat/test-as-nlist.R | 12 ---- mcmcr-0.5.0/mcmcr/tests/testthat/test-as-nlists.R | 2 mcmcr-0.5.0/mcmcr/tests/testthat/test-coef.R | 24 +++++++++ mcmcr-0.5.0/mcmcr/tests/testthat/test-estimates.R | 12 ++++ mcmcr-0.5.0/mcmcr/tests/testthat/test-tidy.R | 11 +--- 27 files changed, 174 insertions(+), 125 deletions(-)
Title: Enhanced Foreign Function Interface Supporting Long Vectors
Description: Provides .C64(), which is an enhanced version of .C()
and .Fortran() from the foreign function interface. .C64() supports long
vectors, arguments of type 64-bit integer, and provides a mechanism to
avoid unnecessary copies of read-only and write-only arguments. This
makes it a convenient and fast interface to C/C++ and Fortran code.
Author: Kaspar Moesinger [aut],
Florian Gerber [aut] (<https://orcid.org/0000-0001-8545-5263>),
Reinhard Furrer [cre, ctb] (<https://orcid.org/0000-0002-6319-2332>)
Maintainer: Reinhard Furrer <reinhard.furrer@math.uzh.ch>
Diff between dotCall64 versions 1.0-0 dated 2018-07-30 and 1.0-1 dated 2021-02-11
DESCRIPTION | 28 +++++++++++++++------------- MD5 | 6 +++--- NEWS | 4 ++++ man/dotCall64.Rd | 11 +++++++++-- 4 files changed, 31 insertions(+), 18 deletions(-)
Title: An API Wrapper for WordPress Site APIs
Description: An API wrapper that helps R developers retrieve data from a WordPress site's API in tidy format, in addition to
publishing content on the WordPress site (WordPress API documentation: <https://developer.wordpress.org/rest-api/>).
Author: Simit Patel [aut, cre],
SixJupiter [cph, fnd]
Maintainer: Simit Patel <simit@sixjupiter.com>
Diff between wordpressr versions 0.2.0 dated 2021-01-04 and 0.2.1 dated 2021-02-11
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 8 +++++++- R/create-wp-post.R | 20 ++++++++++---------- inst/doc/wordpressr.html | 43 +++++++++++++++++++++++++++++++++++-------- man/create_wp_post.Rd | 10 ++++------ 6 files changed, 64 insertions(+), 33 deletions(-)
Title: Parallel Version of the L-BFGS-B Optimization Method
Description: Provides a parallel version of the L-BFGS-B method of optim(). The main function of the package is optimParallel(), which has the same usage and output as optim(). Using optimParallel() can significantly reduce the optimization time.
Author: Florian Gerber [aut, cre] (<https://orcid.org/0000-0001-8545-5263>)
Maintainer: Florian Gerber <flora.fauna.gerber@gmail.com>
Diff between optimParallel versions 1.0-1 dated 2020-05-02 and 1.0-2 dated 2021-02-11
DESCRIPTION | 21 ++++++++++++--------- MD5 | 12 ++++++------ NEWS | 6 ++++++ R/optimParallel.R | 6 +++--- build/vignette.rds |binary man/optimParallel.Rd | 6 +++--- tests/testthat/test-issues.R | 2 +- 7 files changed, 31 insertions(+), 22 deletions(-)
Title: A Grammar of Clinical Data Summary
Description: A tool created to simplify the data manipulation necessary to create clinical reports.
Author: Eli Miller [aut] (<https://orcid.org/0000-0002-2127-9456>),
Mike Stackhouse [aut, cre] (<https://orcid.org/0000-0001-6030-723X>),
Ashley Tarasiewicz [aut],
Nathan Kosiba [aut] (<https://orcid.org/0000-0001-5359-4234>),
Atorus Research LLC [cph]
Maintainer: Mike Stackhouse <mike.stackhouse@atorusresearch.com>
Diff between Tplyr versions 0.3.1 dated 2021-01-08 and 0.4.0 dated 2021-02-11
DESCRIPTION | 6 MD5 | 42 +- NAMESPACE | 4 NEWS.md | 23 + R/count.R | 67 +++ R/count_bindings.R | 48 ++ R/format.R | 12 R/nested.R |only R/riskdiff.R | 8 R/sort.R | 3 R/stats.R | 7 R/utils.R | 28 + R/zzz.R | 14 README.md | 61 +-- inst/doc/Tplyr.html | 804 +++++++++++++++---------------------------- inst/doc/count.html | 386 ++++---------------- inst/doc/denom.html | 809 +++++++++++++++----------------------------- inst/doc/desc.html | 662 +++++++++++------------------------- inst/doc/options.html | 562 ++++++++---------------------- inst/doc/shift.html | 342 ++---------------- inst/doc/table.html | 426 +++++------------------ man/keep_levels.Rd |only tests/testthat/test-count.R | 174 +++++++++ 23 files changed, 1601 insertions(+), 2887 deletions(-)
Title: Load Test Shiny Applications
Description: Assesses the number of concurrent users 'shiny'
applications are capable of supporting, and for directing application changes
in order to support a higher number of users. Provides facilities for recording
'shiny' application sessions, playing recorded sessions against a target
server at load, and analyzing the resulting metrics.
Author: Barret Schloerke [aut, cre] (<https://orcid.org/0000-0001-9986-114X>),
Alan Dipert [aut],
Barbara Borges [aut],
RStudio [cph, fnd]
Maintainer: Barret Schloerke <barret@rstudio.com>
Diff between shinyloadtest versions 1.0.1 dated 2020-01-09 and 1.1.0 dated 2021-02-11
DESCRIPTION | 29 MD5 | 42 - NAMESPACE | 1 NEWS.md | 41 + R/analysis.R | 157 ++--- R/auth.R | 5 R/make_report.R | 39 + R/plotting.R | 852 +++++++++------------------- R/shiny-recorder.R | 55 + R/util.R | 32 + README.md | 104 +++ data/slt_demo_data_1.rda |binary data/slt_demo_data_16.rda |binary data/slt_demo_data_4.rda |binary inst/WORDLIST |only inst/dist/components/largest_mean_diff.html | 2 man/load_runs.Rd | 43 + man/record_session.Rd | 6 man/slt_demo_data_1.Rd | 8 man/slt_demo_data_16.Rd | 8 man/slt_demo_data_4.Rd | 8 man/slt_plot.Rd | 28 tests/spelling.R |only 23 files changed, 749 insertions(+), 711 deletions(-)
Title: Estimate Kinship and FST under Arbitrary Population Structure
Description: Provides functions to estimate the kinship matrix of individuals from a large set of biallelic SNPs, and extract inbreeding coefficients and the generalized FST (Wright's fixation index). Method described in Ochoa and Storey (2021) <doi:10.1371/journal.pgen.1009241>.
Author: Alejandro Ochoa [aut, cre] (<https://orcid.org/0000-0003-4928-3403>),
John D. Storey [aut] (<https://orcid.org/0000-0001-5992-402X>)
Maintainer: Alejandro Ochoa <alejandro.ochoa@duke.edu>
Diff between popkin versions 1.3.7 dated 2021-02-09 and 1.3.8 dated 2021-02-11
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 7 +++++++ R/get_mem_lim.R | 5 ++++- inst/doc/popkin.html | 4 ++-- 5 files changed, 20 insertions(+), 10 deletions(-)
More information about ParBayesianOptimization at CRAN
Permanent link
More information about DiversificationR at CRAN
Permanent link
Title: Case-Control Analysis of Multi-Allelic Loci
Description: Data sets and functions for chi-squared Hardy-Weinberg and case-control association tests of highly polymorphic genetic data [e.g., human leukocyte antigen (HLA) data]. Performs association tests at multiple levels of polymorphism (haplotype, locus and HLA amino-acids) as described in Pappas DJ, Marin W, Hollenbach JA, Mack SJ (2016) <doi:10.1016/j.humimm.2015.12.006>. Combines rare variants to a common class to account for sparse cells in tables as described by Hollenbach JA, Mack SJ, Thomson G, Gourraud PA (2012) <doi:10.1007/978-1-61779-842-9_14>.
Author: Derek Pappas <djpappas75@gmail.com>, Steve Mack <Steven.Mack@ucsf.edu>, Jill
Hollenbach <Jill.Hollenbach@ucsf.edu>
Maintainer: Steve Mack <Steven.Mack@ucsf.edu>
Diff between BIGDAWG versions 2.3.1 dated 2020-10-08 and 2.3.6 dated 2021-02-11
BIGDAWG-2.3.1/BIGDAWG/data |only BIGDAWG-2.3.6/BIGDAWG/DESCRIPTION | 18 BIGDAWG-2.3.6/BIGDAWG/MD5 | 215 ++-- BIGDAWG-2.3.6/BIGDAWG/NAMESPACE | 94 - BIGDAWG-2.3.6/BIGDAWG/NEWS | 444 ++++----- BIGDAWG-2.3.6/BIGDAWG/R/A.R | 360 +++---- BIGDAWG-2.3.6/BIGDAWG/R/A_ExonPtnAlign_functions.R | 542 +++++----- BIGDAWG-2.3.6/BIGDAWG/R/A_support_functions.R | 367 +++---- BIGDAWG-2.3.6/BIGDAWG/R/A_wrapper.R | 169 +-- BIGDAWG-2.3.6/BIGDAWG/R/BIGDAWG.R | 1035 ++++++++++----------- BIGDAWG-2.3.6/BIGDAWG/R/DRB_Parser.R | 366 +++---- BIGDAWG-2.3.6/BIGDAWG/R/ErrLog.R | 130 +- BIGDAWG-2.3.6/BIGDAWG/R/GL2TAB.R | 299 +++--- BIGDAWG-2.3.6/BIGDAWG/R/GLSconvert.R | 126 +- BIGDAWG-2.3.6/BIGDAWG/R/HWE.R | 49 BIGDAWG-2.3.6/BIGDAWG/R/HWE_support_functions.R | 425 ++++---- BIGDAWG-2.3.6/BIGDAWG/R/HWE_wrapper.R | 64 - BIGDAWG-2.3.6/BIGDAWG/R/H_MC.R | 212 ++-- BIGDAWG-2.3.6/BIGDAWG/R/H_support_functions.R | 121 +- BIGDAWG-2.3.6/BIGDAWG/R/H_wrapper_MC.R | 323 +++--- BIGDAWG-2.3.6/BIGDAWG/R/L.R | 308 +++--- BIGDAWG-2.3.6/BIGDAWG/R/L_wrapper.R | 131 +- BIGDAWG-2.3.6/BIGDAWG/R/TAB2GL.R | 295 ++--- BIGDAWG-2.3.6/BIGDAWG/R/check_functions.R | 941 +++++++++---------- BIGDAWG-2.3.6/BIGDAWG/R/general_functions.R | 746 +++++++-------- BIGDAWG-2.3.6/BIGDAWG/R/stat_functions.R | 804 ++++++++++------ BIGDAWG-2.3.6/BIGDAWG/R/sysdata.rda |binary BIGDAWG-2.3.6/BIGDAWG/R/update_wrapper.R | 237 ++-- BIGDAWG-2.3.6/BIGDAWG/build/vignette.rds |binary BIGDAWG-2.3.6/BIGDAWG/inst/doc/BIGDAWG.Rmd | 563 +++++------ BIGDAWG-2.3.6/BIGDAWG/inst/doc/BIGDAWG.html | 868 ++++++----------- BIGDAWG-2.3.6/BIGDAWG/inst/doc/GLSconvert.Rmd | 274 ++--- BIGDAWG-2.3.6/BIGDAWG/inst/doc/GLSconvert.html | 599 +++--------- BIGDAWG-2.3.6/BIGDAWG/man/A.Rd | 60 - BIGDAWG-2.3.6/BIGDAWG/man/A.wrapper.Rd | 89 - BIGDAWG-2.3.6/BIGDAWG/man/AA.df.check.Rd | 34 BIGDAWG-2.3.6/BIGDAWG/man/AAtable.builder.Rd | 38 BIGDAWG-2.3.6/BIGDAWG/man/AlignObj.Create.Rd | 42 BIGDAWG-2.3.6/BIGDAWG/man/AlignObj.Update.Rd | 42 BIGDAWG-2.3.6/BIGDAWG/man/AlignmentFilter.Rd | 42 BIGDAWG-2.3.6/BIGDAWG/man/Append.System.Rd | 38 BIGDAWG-2.3.6/BIGDAWG/man/BIGDAWG.Rd | 149 +-- BIGDAWG-2.3.6/BIGDAWG/man/Build.Matrix.Rd | 38 BIGDAWG-2.3.6/BIGDAWG/man/Check.Cores.Rd | 32 BIGDAWG-2.3.6/BIGDAWG/man/Check.Data.Rd | 42 BIGDAWG-2.3.6/BIGDAWG/man/Check.Params.GLS.Rd | 68 - BIGDAWG-2.3.6/BIGDAWG/man/Check.Params.Rd | 98 - BIGDAWG-2.3.6/BIGDAWG/man/CheckAlleles.Rd | 38 BIGDAWG-2.3.6/BIGDAWG/man/CheckHLA.Rd | 34 BIGDAWG-2.3.6/BIGDAWG/man/CheckLoci.Rd | 38 BIGDAWG-2.3.6/BIGDAWG/man/CheckRelease.Rd | 42 BIGDAWG-2.3.6/BIGDAWG/man/CheckString.Allele.Rd | 34 BIGDAWG-2.3.6/BIGDAWG/man/CheckString.Locus.Rd | 38 BIGDAWG-2.3.6/BIGDAWG/man/Create.Null.Table.Rd | 42 BIGDAWG-2.3.6/BIGDAWG/man/DRB345.Check.Wrapper.Rd | 38 BIGDAWG-2.3.6/BIGDAWG/man/DRB345.Check.Zygosity.Rd | 38 BIGDAWG-2.3.6/BIGDAWG/man/DRB345.Exp.Rd | 34 BIGDAWG-2.3.6/BIGDAWG/man/DRB345.parser.Rd | 34 BIGDAWG-2.3.6/BIGDAWG/man/EVSremoval.Rd | 38 BIGDAWG-2.3.6/BIGDAWG/man/Err.Log.Rd | 46 BIGDAWG-2.3.6/BIGDAWG/man/ExonPtnAlign.Create.Rd | 38 BIGDAWG-2.3.6/BIGDAWG/man/ExonPtnList.Rd | 32 BIGDAWG-2.3.6/BIGDAWG/man/Filler.Rd | 42 BIGDAWG-2.3.6/BIGDAWG/man/Format.Allele.Rd | 38 BIGDAWG-2.3.6/BIGDAWG/man/Format.Tab.Rd | 38 BIGDAWG-2.3.6/BIGDAWG/man/GL2Tab.Loci.Rd | 42 BIGDAWG-2.3.6/BIGDAWG/man/GL2Tab.Sub.Rd | 38 BIGDAWG-2.3.6/BIGDAWG/man/GL2Tab.wrapper.Rd | 50 - BIGDAWG-2.3.6/BIGDAWG/man/GLSconvert.Rd | 80 - BIGDAWG-2.3.6/BIGDAWG/man/GetField.Rd | 38 BIGDAWG-2.3.6/BIGDAWG/man/GetFiles.Rd | 34 BIGDAWG-2.3.6/BIGDAWG/man/H.MC.Rd | 44 BIGDAWG-2.3.6/BIGDAWG/man/H.MC.wrapper.Rd | 95 - BIGDAWG-2.3.6/BIGDAWG/man/HLA_data.Rd | 32 BIGDAWG-2.3.6/BIGDAWG/man/HWE.ChiSq.Rd | 42 BIGDAWG-2.3.6/BIGDAWG/man/HWE.Rd | 4 BIGDAWG-2.3.6/BIGDAWG/man/HWE.wrapper.Rd | 44 BIGDAWG-2.3.6/BIGDAWG/man/L.Rd | 52 - BIGDAWG-2.3.6/BIGDAWG/man/L.wrapper.Rd | 74 - BIGDAWG-2.3.6/BIGDAWG/man/MergeData_Output.Rd | 42 BIGDAWG-2.3.6/BIGDAWG/man/PgrpExtract.Rd | 38 BIGDAWG-2.3.6/BIGDAWG/man/PgrpFormat.Rd | 38 BIGDAWG-2.3.6/BIGDAWG/man/PreCheck.Rd | 54 - BIGDAWG-2.3.6/BIGDAWG/man/RunChiSq.Rd | 34 BIGDAWG-2.3.6/BIGDAWG/man/RunChiSq_c.Rd |only BIGDAWG-2.3.6/BIGDAWG/man/Stripper.Rd | 34 BIGDAWG-2.3.6/BIGDAWG/man/Tab2GL.Loci.Rd | 46 BIGDAWG-2.3.6/BIGDAWG/man/Tab2GL.Sub.Rd | 42 BIGDAWG-2.3.6/BIGDAWG/man/Tab2GL.wrapper.Rd | 50 - BIGDAWG-2.3.6/BIGDAWG/man/TableMaker.Rd | 34 BIGDAWG-2.3.6/BIGDAWG/man/UpdateRelease.Rd | 36 BIGDAWG-2.3.6/BIGDAWG/man/buildHAPnames.Rd | 38 BIGDAWG-2.3.6/BIGDAWG/man/buildHAPsets.Rd | 46 BIGDAWG-2.3.6/BIGDAWG/man/cci.Rd | 128 +- BIGDAWG-2.3.6/BIGDAWG/man/cci.pval.Rd | 34 BIGDAWG-2.3.6/BIGDAWG/man/cci.pval.list.Rd | 34 BIGDAWG-2.3.6/BIGDAWG/man/getAllele.Count.Rd | 34 BIGDAWG-2.3.6/BIGDAWG/man/getCS.Mat.Rd | 46 BIGDAWG-2.3.6/BIGDAWG/man/getCS.stat.Rd | 38 BIGDAWG-2.3.6/BIGDAWG/man/getFileName.Rd | 34 BIGDAWG-2.3.6/BIGDAWG/man/getHap.Rd | 38 BIGDAWG-2.3.6/BIGDAWG/man/getObsFreq.Rd | 38 BIGDAWG-2.3.6/BIGDAWG/man/make2x2.Rd | 46 BIGDAWG-2.3.6/BIGDAWG/man/makeComb.Rd | 34 BIGDAWG-2.3.6/BIGDAWG/man/prepData.Rd | 34 BIGDAWG-2.3.6/BIGDAWG/man/rmABstrings.Rd | 34 BIGDAWG-2.3.6/BIGDAWG/man/summaryGeno.2.Rd | 38 BIGDAWG-2.3.6/BIGDAWG/vignettes/BIGDAWG.Rmd | 563 +++++------ BIGDAWG-2.3.6/BIGDAWG/vignettes/GLSconvert.Rmd | 274 ++--- 109 files changed, 7500 insertions(+), 7767 deletions(-)
Title: Find Differences Between R Objects
Description: Compare complex R objects and reveal the key
differences. Designed particularly for use in testing packages where
being able to quickly isolate key differences makes understanding test
failures much easier.
Author: Hadley Wickham [aut, cre],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between waldo versions 0.2.3 dated 2020-11-09 and 0.2.4 dated 2021-02-11
DESCRIPTION | 11 ++++--- MD5 | 31 +++++++++++----------- NEWS.md | 15 ++++++++++ R/compare-opts.R | 9 ++++-- R/compare-value.R | 21 +++++++++----- R/compare.R | 10 ++++--- R/utils.R | 45 +++++++++----------------------- man/figures/README/unnamed-chunk-10.svg | 2 - tests/testthat/_snaps/compare-opts.md |only tests/testthat/test-compare-fun.txt | 2 - tests/testthat/test-compare-lang.txt | 3 +- tests/testthat/test-compare-opts.R | 9 ++---- tests/testthat/test-compare-r6.txt | 2 - tests/testthat/test-compare-s3.txt | 13 ++++----- tests/testthat/test-compare-s4.txt | 2 - tests/testthat/test-compare-value.R | 16 +++++++++++ tests/testthat/test-compare.R | 5 +++ 17 files changed, 114 insertions(+), 82 deletions(-)
Title: "Eating the Liver of Data Science"
Description: Provides a collection of helper functions that make various techniques from data science more user-friendly for non-experts. In this way, our aim is to allow non-experts to become familiar with the techniques with only a minimal level of coding knowledge. Indeed, following an ancient Persian idiom, we refer to this as "eating the liver of data science" which could be interpreted as "getting intimately close with data science". Examples of procedures we include are: data partitioning for out-of-sample testing, computing Mean Squared Error (MSE) for quantifying prediction accuracy, and data transformation (z-score and min-max). Besides such helper functions, the package also includes several interesting datasets that are useful for multivariate analysis.
Author: Reza Mohammadi [aut, cre] (<https://orcid.org/0000-0001-9538-0648>),
Kevin Burke [aut]
Maintainer: Reza Mohammadi <a.mohammadi@uva.nl>
Diff between liver versions 1.3 dated 2020-11-13 and 1.4 dated 2021-02-11
liver-1.3/liver/data/classifyRisk.RData |only liver-1.3/liver/man/classifyRisk.Rd |only liver-1.4/liver/DESCRIPTION | 6 +- liver-1.4/liver/MD5 | 39 +++++++------- liver-1.4/liver/NEWS.md | 11 +++- liver-1.4/liver/data/adult.RData |binary liver-1.4/liver/data/churn.RData |binary liver-1.4/liver/data/churnTel.RData |binary liver-1.4/liver/data/datalist |only liver-1.4/liver/data/fertilizer.RData |only liver-1.4/liver/data/risk.RData |only liver-1.4/liver/man/adult.Rd | 16 ++--- liver-1.4/liver/man/advertising.Rd | 6 +- liver-1.4/liver/man/bank.Rd | 4 - liver-1.4/liver/man/cereal.Rd | 2 liver-1.4/liver/man/churn.Rd | 2 liver-1.4/liver/man/churnTel.Rd | 86 ++++++++++++++++++++------------ liver-1.4/liver/man/fertilizer.Rd |only liver-1.4/liver/man/house.Rd | 4 - liver-1.4/liver/man/housePrice.Rd | 2 liver-1.4/liver/man/insurance.Rd | 4 - liver-1.4/liver/man/kNN.Rd | 6 +- liver-1.4/liver/man/marketing.Rd | 4 - liver-1.4/liver/man/risk.Rd |only 24 files changed, 112 insertions(+), 80 deletions(-)
Title: Utilities for 'DIZ' R Package Development
Description: Utility functions used for the R package
development infrastructure inside the data integration centers ('DIZ')
to standardize and facilitate repetitive tasks such as setting up a
database connection or issuing notification messages and to avoid
redundancy.
Author: Jonathan M. Mang [aut, cre] (<https://orcid.org/0000-0003-0518-4710>),
Lorenz A. Kapsner [aut] (<https://orcid.org/0000-0003-1866-860X>),
MIRACUM - Medical Informatics in Research and Care in University
Medicine [fnd],
Universitätsklinikum Erlangen [cph]
Maintainer: Jonathan M. Mang <jonathan.mang@uk-erlangen.de>
Diff between DIZutils versions 0.0.6 dated 2020-11-17 and 0.0.7 dated 2021-02-11
DESCRIPTION | 12 MD5 | 78 +++--- NAMESPACE | 35 +- NEWS.md | 110 ++++++-- R/clean_path_name.R | 60 +++- R/clear.R |only R/close_all_connections.R | 48 ++- R/combine_stats.R |only R/db_connection.R | 428 +++++++++++++++++++++-------------- R/feedback.R | 83 +++++- R/firstup.R | 44 ++- R/get_config.R | 128 +++++----- R/get_config_env.R | 199 ++++++++++------ R/get_current_timestamp.R |only R/get_db_systems.R |only R/global_env_hack.R | 72 +++-- R/notin.R | 66 +++-- R/query_database.R | 96 ++++--- R/set_env_vars.R | 16 + R/setdiff_all.R |only R/string_replacements.R |only R/xml_2_json.R |only README.md | 40 +-- man/clean_path_name.Rd | 51 ++-- man/cleanup_old_logfile.Rd | 50 ++-- man/clear.Rd |only man/close_all_connections.Rd | 60 ++-- man/combine_stats.Rd |only man/db_connection.Rd | 139 +++++------ man/feedback.Rd | 174 +++++++------- man/feedback_get_formatted_string.Rd | 80 +++--- man/feedback_to_console.Rd | 109 ++++---- man/feedback_to_logfile.Rd | 78 +++--- man/feedback_to_logjs.Rd | 52 ++-- man/feedback_to_ui.Rd | 58 ++-- man/firstup.Rd | 42 +-- man/get_config.Rd | 80 +++--- man/get_config_env.Rd | 87 ++++--- man/get_current_timestamp.Rd |only man/get_db_systems.Rd |only man/global_env_hack.Rd | 66 ++--- man/grapes-notin-grapes.Rd | 48 +-- man/query_database.Rd | 67 ++--- man/set_env_vars.Rd | 52 ++-- man/setdiff_all.Rd |only man/string_replacements.Rd |only man/xml_2_json.Rd |only 47 files changed, 1625 insertions(+), 1183 deletions(-)
Title: Lipid Annotation for LC-MS/MS DDA or DIA Data
Description: Lipid annotation in untargeted liquid chromatography mass spectrometry lipidomics based on fragmentation rules. Alcoriza-Balaguer MI, Garcia-Canaveras JC, Lopez A, Conde I, Juan O, Carretero J, Lahoz A (2019) <doi:10.1021/acs.analchem.8b03409>.
Author: M Isabel Alcoriza-Balaguer, J Carlos Garcia-Canaveras
Maintainer: M Isabel Alcoriza-Balaguer <maribel_alcoriza@iislafe.es>
Diff between LipidMS versions 2.0.0 dated 2021-01-19 and 2.1.0 dated 2021-02-11
LipidMS-2.0.0/LipidMS/inst/doc/vignette.R |only LipidMS-2.0.0/LipidMS/inst/doc/vignette.Rmd |only LipidMS-2.0.0/LipidMS/inst/doc/vignette.html |only LipidMS-2.0.0/LipidMS/vignettes/vignette.Rmd |only LipidMS-2.1.0/LipidMS/DESCRIPTION | 8 LipidMS-2.1.0/LipidMS/MD5 | 38 - LipidMS-2.1.0/LipidMS/R/additionalFunctions.R | 101 ++-- LipidMS-2.1.0/LipidMS/R/dataProcessing.R | 4 LipidMS-2.1.0/LipidMS/R/idFunctionsNeg.R | 455 +++++++++---------- LipidMS-2.1.0/LipidMS/R/idFunctionsPos.R | 401 ++++++++-------- LipidMS-2.1.0/LipidMS/R/internalProcessing.R | 26 - LipidMS-2.1.0/LipidMS/R/internaldbs.R | 2 LipidMS-2.1.0/LipidMS/R/subfunctionsIdentification.R | 135 +++-- LipidMS-2.1.0/LipidMS/README.md |only LipidMS-2.1.0/LipidMS/build/vignette.rds |binary LipidMS-2.1.0/LipidMS/inst/LipidMSapp/server.R | 34 + LipidMS-2.1.0/LipidMS/inst/LipidMSapp/ui.R | 45 + LipidMS-2.1.0/LipidMS/inst/doc/Vignette.R |only LipidMS-2.1.0/LipidMS/inst/doc/Vignette.Rmd |only LipidMS-2.1.0/LipidMS/inst/doc/Vignette.html |only LipidMS-2.1.0/LipidMS/inst/extdata |only LipidMS-2.1.0/LipidMS/man/crossTables.Rd | 10 LipidMS-2.1.0/LipidMS/man/idPOS.Rd | 2 LipidMS-2.1.0/LipidMS/man/organizeResults.Rd | 7 LipidMS-2.1.0/LipidMS/vignettes/Vignette.Rmd |only 25 files changed, 686 insertions(+), 582 deletions(-)
More information about matrixprofiler at CRAN
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Title: Fast Fixed-Effects Estimations
Description: Fast and user-friendly estimation of econometric models with multiple fixed-effects. Includes ordinary least squares (OLS), generalized linear models (GLM) and the negative binomial.
The core of the package is based on optimized parallel C++ code, scaling especially well for large data sets. The method to obtain the fixed-effects coefficients is based on Berge (2018) <https://wwwen.uni.lu/content/download/110162/1299525/file/2018_13>.
Further provides tools to export and view the results of several estimations with intuitive design to cluster the standard-errors.
Author: Laurent Berge [aut, cre],
Sebastian Krantz [ctb]
Maintainer: Laurent Berge <laurent.berge@u-bordeaux.fr>
Diff between fixest versions 0.8.1 dated 2021-01-13 and 0.8.2 dated 2021-02-11
DESCRIPTION | 6 MD5 | 32 NEWS.md | 30 R/ESTIMATION_FUNS.R | 35 R/MiscFuns.R | 120 +- R/etable.R | 5 R/fixest_env.R | 3 build/vignette.rds |binary inst/doc/exporting_tables.R | 102 +- inst/doc/exporting_tables.html | 356 ------- inst/doc/fixest_walkthrough.Rmd | 2 inst/doc/fixest_walkthrough.html | 1676 ++++--------------------------------- inst/doc/multiple_estimations.html | 405 +------- inst/doc/standard_errors.html | 244 ----- man/etable.Rd | 2 man/fitstat.Rd | 25 vignettes/fixest_walkthrough.Rmd | 2 17 files changed, 539 insertions(+), 2506 deletions(-)
More information about covidprobability at CRAN
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Title: Create Interactive Chart with the JavaScript 'Billboard' Library
Description: Provides an 'htmlwidgets' interface to 'billboard.js',
a re-usable easy interface JavaScript chart library, based on D3 v4+.
Chart types include line charts, scatterplots, bar/lollipop charts, histogram/density plots, pie/donut charts and gauge charts.
All charts are interactive, and a proxy method is implemented to smoothly update a chart without rendering it again in 'shiny' apps.
Author: Victor Perrier [aut, cre],
Fanny Meyer [aut],
NAVER Corp [cph] (billboard.js library),
Mike Bostock [cph] (d3.format library)
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between billboarder versions 0.2.8 dated 2020-01-09 and 0.3.0 dated 2021-02-11
billboarder-0.2.8/billboarder/inst/proxy_examples/transform |only billboarder-0.2.8/billboarder/man/set_theme.Rd |only billboarder-0.3.0/billboarder/DESCRIPTION | 12 billboarder-0.3.0/billboarder/LICENSE | 4 billboarder-0.3.0/billboarder/MD5 | 126 - billboarder-0.3.0/billboarder/NAMESPACE | 7 billboarder-0.3.0/billboarder/NEWS.md | 29 billboarder-0.3.0/billboarder/R/bauge.R | 37 billboarder-0.3.0/billboarder/R/bb_helpers.R | 52 billboarder-0.3.0/billboarder/R/bb_labs.R | 54 billboarder-0.3.0/billboarder/R/bb_utils.R | 12 billboarder-0.3.0/billboarder/R/billboard-mapping.R | 132 - billboarder-0.3.0/billboarder/R/billboarder-data.R | 3 billboarder-0.3.0/billboarder/R/billboarder-package.R | 8 billboarder-0.3.0/billboarder/R/billboarder-shiny.R | 2 billboarder-0.3.0/billboarder/R/billboarder.R | 11 billboarder-0.3.0/billboarder/R/proxy_example.R | 8 billboarder-0.3.0/billboarder/R/theme.R | 21 billboarder-0.3.0/billboarder/R/utils.R | 9 billboarder-0.3.0/billboarder/README.md | 7 billboarder-0.3.0/billboarder/build/vignette.rds |binary billboarder-0.3.0/billboarder/inst/doc/billboarder-intro.html | 386 ++-- billboarder-0.3.0/billboarder/inst/doc/billboarder-mapping.html | 276 ++- billboarder-0.3.0/billboarder/inst/doc/billboarder-options.html | 512 +++--- billboarder-0.3.0/billboarder/inst/doc/billboarder.R | 66 billboarder-0.3.0/billboarder/inst/doc/billboarder.Rmd | 77 billboarder-0.3.0/billboarder/inst/doc/billboarder.html | 775 +++++----- billboarder-0.3.0/billboarder/inst/doc/lines-options.R | 6 billboarder-0.3.0/billboarder/inst/doc/lines-options.Rmd | 6 billboarder-0.3.0/billboarder/inst/doc/lines-options.html | 357 ++-- billboarder-0.3.0/billboarder/inst/doc/linked-tooltip.R | 16 billboarder-0.3.0/billboarder/inst/doc/linked-tooltip.Rmd | 20 billboarder-0.3.0/billboarder/inst/doc/linked-tooltip.html | 292 ++- billboarder-0.3.0/billboarder/inst/htmlwidgets/billboarder.js | 68 billboarder-0.3.0/billboarder/inst/htmlwidgets/lib/billboard/billboard.min.css | 18 billboarder-0.3.0/billboarder/inst/htmlwidgets/lib/billboard/billboard.pkgd.min.js | 44 billboarder-0.3.0/billboarder/inst/htmlwidgets/lib/billboard/datalab.min.css |only billboarder-0.3.0/billboarder/inst/htmlwidgets/lib/billboard/graph.min.css | 17 billboarder-0.3.0/billboarder/inst/htmlwidgets/lib/billboard/insight.min.css | 17 billboarder-0.3.0/billboarder/man/avengers.Rd | 11 billboarder-0.3.0/billboarder/man/bb_area.Rd | 36 billboarder-0.3.0/billboarder/man/bb_labs.Rd | 36 billboarder-0.3.0/billboarder/man/bb_proxy_axis_labels.Rd | 40 billboarder-0.3.0/billboarder/man/bb_proxy_groups.Rd | 36 billboarder-0.3.0/billboarder/man/bb_proxy_xs.Rd | 36 billboarder-0.3.0/billboarder/man/bb_scatterplot.Rd | 4 billboarder-0.3.0/billboarder/man/bb_spline.Rd | 36 billboarder-0.3.0/billboarder/man/bb_svg.Rd | 36 billboarder-0.3.0/billboarder/man/bb_unload.Rd | 36 billboarder-0.3.0/billboarder/man/billboard-aes.Rd | 16 billboarder-0.3.0/billboarder/man/billboard-theme.Rd |only billboarder-0.3.0/billboarder/man/billboarder-exports.Rd | 23 billboarder-0.3.0/billboarder/man/billboarder-package.Rd | 26 billboarder-0.3.0/billboarder/man/cdc_prod_filiere.Rd | 6 billboarder-0.3.0/billboarder/man/equilibre_mensuel.Rd | 6 billboarder-0.3.0/billboarder/man/prefix.Rd | 32 billboarder-0.3.0/billboarder/man/prod_filiere_long.Rd | 6 billboarder-0.3.0/billboarder/man/prod_par_filiere.Rd | 6 billboarder-0.3.0/billboarder/man/proxy_example.Rd | 6 billboarder-0.3.0/billboarder/man/suffix.Rd | 32 billboarder-0.3.0/billboarder/tests/testthat/test-billboarder-shiny.R | 17 billboarder-0.3.0/billboarder/tests/testthat/test-mapping.R | 47 billboarder-0.3.0/billboarder/tests/testthat/test-proxy_example.R | 2 billboarder-0.3.0/billboarder/vignettes/billboarder.Rmd | 77 billboarder-0.3.0/billboarder/vignettes/lines-options.Rmd | 6 billboarder-0.3.0/billboarder/vignettes/linked-tooltip.Rmd | 20 66 files changed, 2295 insertions(+), 1827 deletions(-)
Title: Privacy Preserving Record Linkage
Description: A toolbox for deterministic, probabilistic and privacy-preserving record linkage techniques. Combines the functionality of the 'Merge ToolBox' (<http://record-linkage.de>) with current privacy-preserving techniques.
Author: Rainer Schnell [aut, cph],
Dorothea Rukasz [aut, cre],
Christian Borgs [ctb],
Stefan Brumme [ctb] (HMAC, SHA256),
William B. Brogden [ctb] (Metaphone),
Tim O'Brien [ctb] (Metaphone),
Stephen Lacy [ctb] (Double Metaphone),
Apache Software Foundation [cph]
Maintainer: Dorothea Rukasz <mitarbeiter.schnell@uni-due.de>
Diff between PPRL versions 0.3.5.2 dated 2019-01-08 and 0.3.6 dated 2021-02-11
DESCRIPTION | 10 +- MD5 | 6 - R/RcppExports.R | 210 +++++++++++++++++++++++----------------------- src/StandardizeString.cpp | 2 4 files changed, 114 insertions(+), 114 deletions(-)
Title: Tuning for 'mlr3'
Description: Implements methods for hyperparameter tuning with
'mlr3', e.g. Grid Search, Random Search, or Simulated Annealing.
Various termination criteria can be set and combined. The class
'AutoTuner' provides a convenient way to perform nested resampling in
combination with 'mlr3'.
Author: Marc Becker [cre, aut] (<https://orcid.org/0000-0002-8115-0400>),
Michel Lang [aut] (<https://orcid.org/0000-0001-9754-0393>),
Jakob Richter [aut] (<https://orcid.org/0000-0003-4481-5554>),
Bernd Bischl [aut] (<https://orcid.org/0000-0001-6002-6980>),
Daniel Schalk [aut] (<https://orcid.org/0000-0003-0950-1947>)
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3tuning versions 0.6.0 dated 2021-01-24 and 0.7.0 dated 2021-02-11
DESCRIPTION | 16 +-- MD5 | 34 +++--- NAMESPACE | 3 NEWS.md | 10 + R/ArchiveTuning.R | 83 +++++++++++++++ R/TuningInstanceMulticrit.R | 2 R/TuningInstanceSingleCrit.R | 2 R/helper.R | 56 ++++++++++ README.md | 2 build/partial.rdb |binary man/ArchiveTuning.Rd | 130 ++++++++++++++++++++++++- man/AutoTuner.Rd | 2 man/TuningInstanceMultiCrit.Rd | 1 man/TuningInstanceSingleCrit.Rd | 1 man/extract_inner_tuning_results.Rd |only tests/testthat/helper.R | 2 tests/testthat/test_ArchiveTuning.R |only tests/testthat/test_AutoTuner.R | 50 +++++++++ tests/testthat/test_TuningInstanceSingleCrit.R | 20 +++ 19 files changed, 383 insertions(+), 31 deletions(-)
Title: Tools for Inference in the Presence of a Monotone Likelihood
Description: Proportional hazards estimation in the presence of a partially monotone likelihood has difficulties, in that finite estimators do not exist. These difficulties are related to those arising from logistic and multinomial regression. References for methods are given in the separate function documents.
Author: John E. Kolassa and Juan Zhang
Maintainer: John E. Kolassa <kolassa@stat.rutgers.edu>
Diff between PHInfiniteEstimates versions 1.6 dated 2020-12-04 and 1.7 dated 2021-02-11
PHInfiniteEstimates-1.6/PHInfiniteEstimates/R/testp.R |only PHInfiniteEstimates-1.6/PHInfiniteEstimates/man/testp.Rd |only PHInfiniteEstimates-1.7/PHInfiniteEstimates/DESCRIPTION | 8 - PHInfiniteEstimates-1.7/PHInfiniteEstimates/MD5 | 44 +++-- PHInfiniteEstimates-1.7/PHInfiniteEstimates/NAMESPACE | 18 ++ PHInfiniteEstimates-1.7/PHInfiniteEstimates/R/aalenjohansen.R |only PHInfiniteEstimates-1.7/PHInfiniteEstimates/R/bestbeta.R | 31 +++ PHInfiniteEstimates-1.7/PHInfiniteEstimates/R/checkresults.R | 75 +++++---- PHInfiniteEstimates-1.7/PHInfiniteEstimates/R/compareplot.R |only PHInfiniteEstimates-1.7/PHInfiniteEstimates/R/compete.simulation.R |only PHInfiniteEstimates-1.7/PHInfiniteEstimates/R/convertmtol.R | 1 PHInfiniteEstimates-1.7/PHInfiniteEstimates/R/fixcoxph.R | 78 ++++++++-- PHInfiniteEstimates-1.7/PHInfiniteEstimates/R/gehan.wilcoxon.R |only PHInfiniteEstimates-1.7/PHInfiniteEstimates/R/heinzeschemper.R |only PHInfiniteEstimates-1.7/PHInfiniteEstimates/R/newllk.R | 5 PHInfiniteEstimates-1.7/PHInfiniteEstimates/R/reduceLR.R | 75 ++++++--- PHInfiniteEstimates-1.7/PHInfiniteEstimates/R/simcode.R |only PHInfiniteEstimates-1.7/PHInfiniteEstimates/R/simultaneouscoverage.R |only PHInfiniteEstimates-1.7/PHInfiniteEstimates/R/summarizefits.R |only PHInfiniteEstimates-1.7/PHInfiniteEstimates/R/testcox.R |only PHInfiniteEstimates-1.7/PHInfiniteEstimates/build/partial.rdb |binary PHInfiniteEstimates-1.7/PHInfiniteEstimates/man/aalenjohansen.Rd |only PHInfiniteEstimates-1.7/PHInfiniteEstimates/man/checkresults.Rd | 6 PHInfiniteEstimates-1.7/PHInfiniteEstimates/man/compareplot.Rd |only PHInfiniteEstimates-1.7/PHInfiniteEstimates/man/compete.simulation.Rd |only PHInfiniteEstimates-1.7/PHInfiniteEstimates/man/fixcoxph.Rd | 2 PHInfiniteEstimates-1.7/PHInfiniteEstimates/man/gehan.wilcoxon.test.Rd |only PHInfiniteEstimates-1.7/PHInfiniteEstimates/man/heinzeschemper.Rd |only PHInfiniteEstimates-1.7/PHInfiniteEstimates/man/reduceLR.Rd | 4 PHInfiniteEstimates-1.7/PHInfiniteEstimates/man/simcode.Rd |only PHInfiniteEstimates-1.7/PHInfiniteEstimates/man/simultaneouscoverage.Rd |only PHInfiniteEstimates-1.7/PHInfiniteEstimates/man/summarizefits.Rd |only PHInfiniteEstimates-1.7/PHInfiniteEstimates/man/testcox.Rd |only 33 files changed, 251 insertions(+), 96 deletions(-)
More information about PHInfiniteEstimates at CRAN
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Title: Statistical Framework to Define Subgroups in Complex Datasets
Description: High-dimensional datasets that do not exhibit a clear intrinsic clustered structure pose a challenge to conventional clustering algorithms. For this reason, we developed an unsupervised framework that helps scientists to better subgroup their datasets based on visual cues, please see Gao S, Mutter S, Casey A, Makinen V-P (2019) Numero: a statistical framework to define multivariable subgroups in complex population-based datasets, Int J Epidemiology, 48:369-37, <doi:10.1093/ije/dyy113>. The framework includes the necessary functions to construct a self-organizing map of the data, to evaluate the statistical significance of the observed data patterns, and to visualize the results.
Author: Song Gao [aut],
Stefan Mutter [aut],
Aaron E. Casey [aut],
Ville-Petteri Makinen [aut, cre]
Maintainer: Ville-Petteri Makinen <vpmakine@gmail.com>
Diff between Numero versions 1.7.4 dated 2021-01-22 and 1.8.0 dated 2021-02-11
Numero-1.7.4/Numero/R/nroImpute.R |only Numero-1.7.4/Numero/man/nroImpute.Rd |only Numero-1.7.4/Numero/src/nro_impute.cpp |only Numero-1.8.0/Numero/DESCRIPTION | 8 Numero-1.8.0/Numero/MD5 | 50 +- Numero-1.8.0/Numero/NAMESPACE | 1 Numero-1.8.0/Numero/R/nroColorize.R | 4 Numero-1.8.0/Numero/R/nroPermute.R | 19 - Numero-1.8.0/Numero/R/nroPlot.R | 6 Numero-1.8.0/Numero/R/numero.clean.R | 4 Numero-1.8.0/Numero/R/numero.create.R | 19 + Numero-1.8.0/Numero/R/numero.prepare.R | 12 Numero-1.8.0/Numero/R/numero.quality.R | 66 ++- Numero-1.8.0/Numero/R/numero.subgroup.R | 34 + Numero-1.8.0/Numero/inst/doc/intro.R | 98 +---- Numero-1.8.0/Numero/inst/doc/intro.html | 473 ++++++++++++--------------- Numero-1.8.0/Numero/inst/doc/intro.rmd | 165 +++------ Numero-1.8.0/Numero/inst/extcode/circus.js | 4 Numero-1.8.0/Numero/inst/extcode/examples.R | 27 - Numero-1.8.0/Numero/man/nroColorize.Rd | 5 Numero-1.8.0/Numero/man/nroPermute.Rd | 7 Numero-1.8.0/Numero/man/numero.subrgoup.Rd | 13 Numero-1.8.0/Numero/src/Numero_init.c | 2 Numero-1.8.0/Numero/src/koho.engine.seed.cpp |only Numero-1.8.0/Numero/src/koho.h | 5 Numero-1.8.0/Numero/src/koho.version.cpp | 2 Numero-1.8.0/Numero/src/nro_permute.cpp | 20 - Numero-1.8.0/Numero/vignettes/intro.rmd | 165 +++------ 28 files changed, 530 insertions(+), 679 deletions(-)
Title: Graphical Tools for Exploring Data with 'iNZight'
Description: Simple plotting function(s) for exploratory data analysis with flexible options allowing for easy plot customisation. The goal is to make it easy for beginners to start exploring a dataset through simple R function calls, as well as provide a similar interface to summary statistics and inference information. Includes functionality to generate interactive HTML-driven graphs. Used by 'iNZight', a graphical user interface providing easy exploration and visualisation of data for students of statistics, available in both desktop and online versions.
Author: Tom Elliott [aut, cre] (<https://orcid.org/0000-0002-7815-6318>),
Yu Han Soh [aut],
Daniel Barnett [aut]
Maintainer: Tom Elliott <tom.elliott@auckland.ac.nz>
Diff between iNZightPlots versions 2.12.4 dated 2020-09-16 and 2.12.6 dated 2021-02-11
DESCRIPTION | 14 ++++----- MD5 | 20 ++++++------- R/getSummary.R | 50 +++++++++++++++++++++++++++++++++ R/iNZightPlot.R | 2 - R/inference.R | 16 +++++----- R/sysdata.rda |binary man/iNZightPlot.Rd | 2 - tests/testthat/test_epi.R | 25 +++++++++++++++- tests/testthat/test_inference.R | 6 +++ tests/testthat/test_interaction.R | 10 +++++- tests/testthat/test_survey_inference.R | 14 ++++----- 11 files changed, 122 insertions(+), 37 deletions(-)
Title: Octonions and Quaternions
Description: Quaternions and Octonions are four- and eight- dimensional
extensions of the complex numbers. They are normed division
algebras over the real numbers and find applications in spatial
rotations (quaternions), and string theory and relativity
(octonions). The quaternions are noncommutative and the octonions
nonassociative. See the package vignette for more details.
Author: Robin K. S. Hankin [aut, cre] (<https://orcid.org/0000-0001-5982-0415>)
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between onion versions 1.2-7 dated 2017-07-11 and 1.5-0 dated 2021-02-11
onion-1.2-7/onion/man/Conj.Rd |only onion-1.2-7/onion/man/Norm.Rd |only onion-1.2-7/onion/man/Ops.onion.Rd |only onion-1.2-7/onion/man/Re.Rd |only onion-1.2-7/onion/man/as.matrix.Rd |only onion-1.2-7/onion/man/dotprod.Rd |only onion-1.2-7/onion/man/print.Rd |only onion-1.2-7/onion/man/str.Rd |only onion-1.2-7/onion/man/sum.Rd |only onion-1.2-7/onion/man/t.Rd |only onion-1.2-7/onion/man/transcendental.Rd |only onion-1.2-7/onion/tests/aaa.R |only onion-1.5-0/onion/DESCRIPTION | 24 onion-1.5-0/onion/MD5 | 130 ++-- onion-1.5-0/onion/NAMESPACE | 90 -- onion-1.5-0/onion/R/S4.R |only onion-1.5-0/onion/R/arith.R |only onion-1.5-0/onion/R/bind.R |only onion-1.5-0/onion/R/coercion.R |only onion-1.5-0/onion/R/compare.R |only onion-1.5-0/onion/R/complex.R |only onion-1.5-0/onion/R/concatenate.R |only onion-1.5-0/onion/R/creation.R |only onion-1.5-0/onion/R/extract.R |only onion-1.5-0/onion/R/logic.R |only onion-1.5-0/onion/R/math.R |only onion-1.5-0/onion/R/matrix.R |only onion-1.5-0/onion/R/names.R |only onion-1.5-0/onion/R/onion.R | 904 ----------------------------- onion-1.5-0/onion/R/onionmat_components.R |only onion-1.5-0/onion/R/orthogonal.R |only onion-1.5-0/onion/R/random.R |only onion-1.5-0/onion/R/seq.R |only onion-1.5-0/onion/R/show.R |only onion-1.5-0/onion/R/summary.R |only onion-1.5-0/onion/R/zzz.R | 5 onion-1.5-0/onion/README.md |only onion-1.5-0/onion/build/partial.rdb |only onion-1.5-0/onion/build/vignette.rds |binary onion-1.5-0/onion/data/bunny.rda |binary onion-1.5-0/onion/inst/doc/onionmat.R |only onion-1.5-0/onion/inst/doc/onionmat.Rmd |only onion-1.5-0/onion/inst/doc/onionmat.pdf |only onion-1.5-0/onion/inst/doc/onionpaper.R | 14 onion-1.5-0/onion/inst/doc/onionpaper.Rnw | 23 onion-1.5-0/onion/inst/doc/onionpaper.pdf |binary onion-1.5-0/onion/man/Arith.Rd |only onion-1.5-0/onion/man/Compare.Rd |only onion-1.5-0/onion/man/Complex.Rd |only onion-1.5-0/onion/man/Extract.Rd | 166 ++++- onion-1.5-0/onion/man/Logic.Rd |only onion-1.5-0/onion/man/Math.Rd |only onion-1.5-0/onion/man/Oil.Rd | 9 onion-1.5-0/onion/man/Summary.Rd |only onion-1.5-0/onion/man/associator.Rd | 1 onion-1.5-0/onion/man/biggest.Rd | 9 onion-1.5-0/onion/man/bind.Rd |only onion-1.5-0/onion/man/bunny.Rd | 3 onion-1.5-0/onion/man/c.Rd | 42 - onion-1.5-0/onion/man/condense.Rd | 19 onion-1.5-0/onion/man/cumsum.Rd | 29 onion-1.5-0/onion/man/length.Rd | 34 - onion-1.5-0/onion/man/names.Rd | 43 + onion-1.5-0/onion/man/onion-class.Rd |only onion-1.5-0/onion/man/onion-package.Rd | 64 -- onion-1.5-0/onion/man/onion.Rd | 106 +-- onion-1.5-0/onion/man/onionmat.Rd |only onion-1.5-0/onion/man/orthogonal.Rd |only onion-1.5-0/onion/man/p3d.Rd | 20 onion-1.5-0/onion/man/plot.Rd | 11 onion-1.5-0/onion/man/prods.Rd | 81 +- onion-1.5-0/onion/man/rep.Rd | 6 onion-1.5-0/onion/man/roct.Rd | 52 - onion-1.5-0/onion/man/rotate.Rd | 10 onion-1.5-0/onion/man/seq.Rd | 8 onion-1.5-0/onion/man/show.Rd |only onion-1.5-0/onion/man/zapsmall.Rd |only onion-1.5-0/onion/src/onion.c | 8 onion-1.5-0/onion/tests/testthat |only onion-1.5-0/onion/tests/testthat.R |only onion-1.5-0/onion/vignettes/onionmat.Rmd |only onion-1.5-0/onion/vignettes/onionpaper.Rnw | 23 onion-1.5-0/onion/vignettes/onionpaper.bib | 10 83 files changed, 612 insertions(+), 1332 deletions(-)
Title: Derive MCMC Parameters
Description: Generates derived parameter(s) from Monte Carlo
Markov Chain (MCMC) samples using R code. This allows Bayesian models
to be fitted without the inclusion of derived parameters which add
unnecessary clutter and slow model fitting. For more information on
MCMC samples see Brooks et al. (2011) <isbn:978-1-4200-7941-8>.
Author: Joe Thorley [aut, cre] (<https://orcid.org/0000-0002-7683-4592>),
Poisson Consulting [cph, fnd]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between mcmcderive versions 0.1.0 dated 2020-07-16 and 0.1.1 dated 2021-02-11
DESCRIPTION | 37 ++++++++++++++++++++----------------- MD5 | 11 ++++++----- NEWS.md | 6 +++++- README.md | 34 +++------------------------------- inst |only man/mcmcderive-package.Rd | 10 +++++----- tests/testthat/test-mcmc-derive.R | 17 ++++++++++------- 7 files changed, 49 insertions(+), 66 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-02-02 0.4.1
2021-01-28 0.4.0
2020-11-11 0.3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-27 0.1.3
2019-03-06 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-28 0.0.6