Title: Analysing and Plotting Genotype-Phenotype Maps
Description: Tools for studying genotype-phenotype maps for bi-allelic loci underlying quantitative phenotypes. The 0.1 version is released in connection with the publication of Gjuvsland et al (2013) and implements basic line plots and the monotonicity measures for GP maps presented in the paper. Reference: Gjuvsland AB, Wang Y, Plahte E and Omholt SW (2013) Monotonicity is a key feature of genotype-phenotype maps. Frontier in Genetics 4:216 <doi:10.3389/fgene.2013.00216>.
Author: Arne B. Gjuvsland <arne.gjuvsland@nmbu.no> and Yunpeng Wang <yunpeng.wng@gmail.com>
Maintainer: Arne B. Gjuvsland <arne.gjuvsland@nmbu.no>
Diff between gpmap versions 0.1.1 dated 2014-01-09 and 0.1.2 dated 2021-02-15
DESCRIPTION | 11 ++++++----- MD5 | 24 ++++++++++++------------ NAMESPACE | 3 +++ R/gpmaps.R | 4 ++-- R/monotone_regression.R | 2 +- man/GPmaps.Rd | 9 ++++----- man/decompose_monotone.Rd | 10 +++++----- man/degree_of_monotonicity.Rd | 2 +- man/enumerate_genotypes.Rd | 2 +- man/generate_gpmap.Rd | 2 +- man/gpmap-package.Rd | 14 +++++++------- man/monotone_regression.Rd | 8 ++++---- man/partial_genotype_order.Rd | 4 ++-- 13 files changed, 49 insertions(+), 46 deletions(-)
Title: A Toolbox for Multivariate Meta-Analysis
Description: A toolbox for meta-analysis. This package includes (1) a robust multivariate meta-analysis of continuous or binary outcomes; (2) a bivariate Egger's test for detecting small study effects; (3) Galaxy Plot: A New Visualization Tool of Bivariate Meta-Analysis Studies; and (4) a bivariate T&F method accounting for publication bias in bivariate meta-analysis, based on symmetry of the galaxy plot.
Author: Chuan Hong [aut],
Chongliang Luo [aut],
Jiayi Tong [aut, cre],
Rui Duan [ctb],
Haitao Chu [ctb],
Yulun Liu [ctb],
Yong Chen [aut]
Maintainer: Jiayi Tong <Jiayi.Tong@pennmedicine.upenn.edu>
Diff between xmeta versions 1.2-1 dated 2020-10-22 and 1.3-0 dated 2021-02-15
DESCRIPTION | 29 +++++----- MD5 | 22 +++---- NAMESPACE | 10 +-- R/galaxy.R | 141 ++++++++++++++++++++++++++++++++++++++++++------- R/galaxy.trimfill.R | 28 ++++----- data/sim_dat.rda |binary man/dat.gen.Rd | 5 - man/galaxy.Rd | 85 ++++++++++++++++++++--------- man/galaxy.trimfill.Rd | 11 +-- man/msset.Rd | 2 man/sim_dat.Rd | 5 + man/xmeta-package.Rd | 27 ++++++--- 12 files changed, 253 insertions(+), 112 deletions(-)
Title: Regularized Linear Models
Description: Algorithms compute concave convex (CC) estimators including robust (penalized) generalized linear models and robust support vector machines via the COCO - composite optimization by conjugation operator. The package also contains penalized Poisson, negative binomial, zero-inflated Poisson, zero-inflated negative binomial regression models and robust models with non-convex loss functions. Wang et al. (2014) <doi:10.1002/sim.6314>,
Wang et al. (2015) <doi:10.1002/bimj.201400143>,
Wang et al. (2016) <doi:10.1177/0962280214530608>,
Wang (2019) <arXiv:1912.11119>,
Wang (2020) <arXiv:2010.02848>.
Author: Zhu Wang, with contributions from Achim Zeileis, Simon Jackman, Brian Ripley, and Patrick Breheny
Maintainer: Zhu Wang <wangz1@uthscsa.edu>
Diff between mpath versions 0.4-2.17 dated 2020-12-13 and 0.4-2.18 dated 2021-02-15
DESCRIPTION | 10 +++++----- MD5 | 30 +++++++++++++++--------------- NEWS | 12 +++++++++++- R/cv.nclreg.R | 2 +- R/nclreg.R | 24 +++++++++++++++++------- inst/doc/brcancer.R | 10 +++++++--- inst/doc/brcancer.Rnw | 14 ++++++++++---- inst/doc/brcancer.pdf |binary inst/doc/kkt.pdf |binary inst/doc/static_brcancer.pdf |binary inst/doc/static_ccglmExample.pdf |binary inst/doc/static_ccsvmExample.pdf |binary inst/doc/static_german.pdf |binary man/nclreg_fit.Rd | 2 +- src/gfunc.f | 6 ++++-- vignettes/brcancer.Rnw | 14 ++++++++++---- 16 files changed, 81 insertions(+), 43 deletions(-)
Title: Dynamic Generation and Quality Checks of Formula Objects
Description: Many statistical models and analyses in R are implemented through formula objects. The formulaic package creates a unified approach for programmatically and dynamically generating formula objects. Users may specify the outcome and inputs of a model directly, search for variables to include based upon naming patterns, incorporate interactions, and identify variables to exclude. A wide range of quality checks are implemented to identify issues such as misspecified variables, duplication, a lack of contrast in the inputs, and a large number of levels in categorical data. Variables that do not meet these quality checks can be automatically excluded from the model. These issues are documented and reported in a manner that provides greater accountability and useful information to guide an investigation of the data.
Author: David Shilane [aut],
Anderson Nelson [aut, ctb, cre],
Caffrey Lee [aut, ctb],
Zichen Huang [aut, ctb]
Maintainer: Anderson Nelson <an2908@columbia.edu>
Diff between formulaic versions 0.0.7 dated 2020-05-04 and 0.0.8 dated 2021-02-15
DESCRIPTION | 18 MD5 | 30 NEWS.md | 12 R/add.backtick.R |only R/create.formula.R | 292 +--- R/reduce.existing.formula.R |only README.md | 2 build/vignette.rds |binary inst/doc/Introduction-to-formulaic.R | 162 +- inst/doc/Introduction-to-formulaic.Rmd | 239 ++- inst/doc/Introduction-to-formulaic.html | 2026 +++++++++++++++++--------------- man/add.backtick.Rd | 6 man/create.formula.Rd | 1 man/reduce.existing.formula.Rd | 9 tests/testthat/test-create_formula.R | 11 tests/testthat/test-reduce-formula.R | 11 vignettes/Introduction-to-formulaic.Rmd | 239 ++- 17 files changed, 1694 insertions(+), 1364 deletions(-)
Title: Get Swiss Federal and Cantonal Vote Results from Opendata.swiss
Description: Builds upon the real time data service as well as the archive for national votes <https://opendata.swiss/api/3/action/package_show?id=echtzeitdaten-am-abstimmungstag-zu-eidgenoessischen-abstimmungsvorlagen> and cantonal votes <https://opendata.swiss/api/3/action/package_show?id=echtzeitdaten-am-abstimmungstag-zu-kantonalen-abstimmungsvorlagen>. It brings the results of Swiss popular votes, aggregated at the geographical level of choice, into R. Additionally, it allows to retrieve data from the Swissvotes-Database, one of the most comprehensive data platforms on Swiss referendums and initiatives <https://swissvotes.ch/page/dataset/swissvotes_dataset.csv>.
Author: Thomas Lo Russo [cre, aut],
Thomas Willi [aut]
Maintainer: Thomas Lo Russo <th.lorusso@gmail.com>
Diff between swissdd versions 1.1.0 dated 2021-02-03 and 1.1.1 dated 2021-02-15
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/get_nationalvotes.R | 4 ++-- R/plot_cantonalvotes.R | 8 +++++++- R/plot_nationalvotes.R | 7 +++++-- R/zzz.R | 2 +- man/get_nationalvotes.Rd | 4 ++-- man/plot_nationalvotes.Rd | 4 ++-- 8 files changed, 30 insertions(+), 21 deletions(-)
Title: 'NOAA' Weather Data from R
Description: Client for many 'NOAA' data sources including the 'NCDC' climate
'API' at <https://www.ncdc.noaa.gov/cdo-web/webservices/v2>, with functions for
each of the 'API' 'endpoints': data, data categories, data sets, data types,
locations, location categories, and stations. In addition, we have an interface
for 'NOAA' sea ice data, the 'NOAA' severe weather inventory, 'NOAA' Historical
Observing 'Metadata' Repository ('HOMR') data, 'NOAA' storm data via 'IBTrACS',
tornado data via the 'NOAA' storm prediction center, and more.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
Brooke Anderson [ctb],
Maëlle Salmon [ctb],
Adam Erickson [ctb],
Nicholas Potter [ctb],
Joseph Stachelek [ctb],
Alex Simmons [ctb],
Karthik Ram [ctb],
Hart Edmund [ctb],
rOpenSci [fnd] (https://ropensci.org)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rnoaa versions 1.3.0 dated 2021-01-07 and 1.3.2 dated 2021-02-15
DESCRIPTION | 11 +-- MD5 | 112 +++++++++++++++++----------------- NEWS.md | 8 ++ R/bsw.R | 7 +- R/buoy.R | 1 R/coops.R | 4 - R/cpc.R | 7 +- R/ersst.R | 2 R/ghcnd.R | 6 + R/ghcnd_search.R | 2 R/ghcnd_stations.R | 2 R/helpers_ghcnd.R | 8 +- R/homr.R | 2 R/isd.R | 2 R/lcd.R | 4 - R/ncdc_datacats.r | 1 R/ncdc_datasets.r | 1 R/ncdc_datatypes.r | 1 R/ncdc_locs.r | 1 R/ncdc_locs_cats.r | 1 R/ncdc_stations.r | 1 R/rnoaa-package.r | 9 +- R/seaice.r | 2 R/storm_events.R | 2 R/swdi.r | 4 - R/tornadoes.R | 1 R/vis_miss.R | 2 man/argo.Rd | 5 + man/bsw.Rd | 7 +- man/buoy.Rd | 3 man/coops.Rd | 4 + man/cpc_prcp.Rd | 7 ++ man/ersst.Rd | 3 man/ghcnd.Rd | 6 + man/ghcnd_search.Rd | 2 man/ghcnd_stations.Rd | 1 man/homr.Rd | 3 man/isd.Rd | 1 man/lcd.Rd | 3 man/meteo_nearby_stations.Rd | 2 man/meteo_pull_monitors.Rd | 6 - man/meteo_tidy_ghcnd.Rd | 6 - man/ncdc.Rd | 2 man/ncdc_datacats.Rd | 5 + man/ncdc_datasets.Rd | 5 + man/ncdc_datatypes.Rd | 5 + man/ncdc_locs.Rd | 5 + man/ncdc_locs_cats.Rd | 5 + man/ncdc_stations.Rd | 5 + man/rnoaa-package.Rd | 9 +- man/sea_ice.Rd | 2 man/storm_events.Rd | 3 man/swdi.Rd | 4 + man/tornadoes.Rd | 3 man/vis_miss.Rd | 1 tests/testthat/test-ghcnd.R | 5 + tests/testthat/test-ghcnd_splitvars.R | 2 57 files changed, 214 insertions(+), 110 deletions(-)
Title: Create Interactive 3D Visualizations of Molecular Data
Description: Create rich and fully interactive 3D visualizations of molecular data.
Visualizations can be included in Shiny apps and R markdown documents, or viewed
from the R console and 'RStudio' Viewer. 'r3dmol' includes an extensive API
to manipulate the visualization after creation, and supports getting data out of
the visualization into R. Based on the '3dmol.js' and the 'htmlwidgets' R package.
Author: Wei Su [aut, cre],
Brady Johnston [aut]
Maintainer: Wei Su <swsoyee@gmail.com>
Diff between r3dmol versions 0.1.0 dated 2020-10-26 and 0.1.1 dated 2021-02-15
r3dmol-0.1.0/r3dmol/man/m_style.Rd |only r3dmol-0.1.1/r3dmol/DESCRIPTION | 19 r3dmol-0.1.1/r3dmol/MD5 | 108 +++-- r3dmol-0.1.1/r3dmol/NAMESPACE | 12 r3dmol-0.1.1/r3dmol/NEWS.md | 4 r3dmol-0.1.1/r3dmol/R/add.R | 309 +++++++++++++-- r3dmol-0.1.1/r3dmol/R/animation.R | 2 r3dmol-0.1.1/r3dmol/R/bio3d.R |only r3dmol-0.1.1/r3dmol/R/common.R | 6 r3dmol-0.1.1/r3dmol/R/r3dmol.R | 7 r3dmol-0.1.1/r3dmol/R/rd.R | 112 +---- r3dmol-0.1.1/r3dmol/R/remove.R | 8 r3dmol-0.1.1/r3dmol/R/sel.R |only r3dmol-0.1.1/r3dmol/R/set.R | 38 + r3dmol-0.1.1/r3dmol/R/style.R |only r3dmol-0.1.1/r3dmol/R/utils.R | 14 r3dmol-0.1.1/r3dmol/R/view-options.R |only r3dmol-0.1.1/r3dmol/README.md | 24 - r3dmol-0.1.1/r3dmol/build/vignette.rds |binary r3dmol-0.1.1/r3dmol/inst/doc/r3dmol.R | 49 +- r3dmol-0.1.1/r3dmol/inst/doc/r3dmol.Rmd | 58 +- r3dmol-0.1.1/r3dmol/inst/doc/r3dmol.html | 299 +++++++------- r3dmol-0.1.1/r3dmol/inst/doc/style-functions.R |only r3dmol-0.1.1/r3dmol/inst/doc/style-functions.Rmd |only r3dmol-0.1.1/r3dmol/inst/doc/style-functions.html |only r3dmol-0.1.1/r3dmol/inst/htmlwidgets/r3dmol.js | 214 +++++----- r3dmol-0.1.1/r3dmol/man/cleanup_nulls.Rd |only r3dmol-0.1.1/r3dmol/man/init.Rd | 14 r3dmol-0.1.1/r3dmol/man/m_add_anyShape.Rd | 76 +-- r3dmol-0.1.1/r3dmol/man/m_add_arrow.Rd |only r3dmol-0.1.1/r3dmol/man/m_add_cylinder.Rd |only r3dmol-0.1.1/r3dmol/man/m_add_isosurface.Rd | 4 r3dmol-0.1.1/r3dmol/man/m_add_label.Rd | 10 r3dmol-0.1.1/r3dmol/man/m_add_line.Rd |only r3dmol-0.1.1/r3dmol/man/m_add_models_as_frames.Rd | 2 r3dmol-0.1.1/r3dmol/man/m_add_outline.Rd |only r3dmol-0.1.1/r3dmol/man/m_add_property_labels.Rd | 8 r3dmol-0.1.1/r3dmol/man/m_add_res_labels.Rd | 13 r3dmol-0.1.1/r3dmol/man/m_add_sphere.Rd |only r3dmol-0.1.1/r3dmol/man/m_add_style.Rd |only r3dmol-0.1.1/r3dmol/man/m_add_surface.Rd | 12 r3dmol-0.1.1/r3dmol/man/m_animate.Rd | 2 r3dmol-0.1.1/r3dmol/man/m_bio3d.Rd |only r3dmol-0.1.1/r3dmol/man/m_center.Rd | 2 r3dmol-0.1.1/r3dmol/man/m_enable_fog.Rd | 2 r3dmol-0.1.1/r3dmol/man/m_fetch_pdb.Rd |only r3dmol-0.1.1/r3dmol/man/m_remove_all_labels.Rd | 4 r3dmol-0.1.1/r3dmol/man/m_remove_all_shapes.Rd | 4 r3dmol-0.1.1/r3dmol/man/m_sel.Rd |only r3dmol-0.1.1/r3dmol/man/m_set_default_cartoon_quality.Rd | 2 r3dmol-0.1.1/r3dmol/man/m_set_projection.Rd | 2 r3dmol-0.1.1/r3dmol/man/m_set_slab.Rd | 2 r3dmol-0.1.1/r3dmol/man/m_set_style.Rd |only r3dmol-0.1.1/r3dmol/man/m_set_view.Rd | 6 r3dmol-0.1.1/r3dmol/man/m_shape_spec.Rd |only r3dmol-0.1.1/r3dmol/man/m_style_cartoon.Rd |only r3dmol-0.1.1/r3dmol/man/m_style_label.Rd |only r3dmol-0.1.1/r3dmol/man/m_style_line.Rd |only r3dmol-0.1.1/r3dmol/man/m_style_sphere.Rd |only r3dmol-0.1.1/r3dmol/man/m_style_stick.Rd |only r3dmol-0.1.1/r3dmol/man/m_style_surface.Rd |only r3dmol-0.1.1/r3dmol/man/m_translate.Rd | 4 r3dmol-0.1.1/r3dmol/man/m_unit_cell.Rd | 8 r3dmol-0.1.1/r3dmol/man/m_vibrate.Rd | 2 r3dmol-0.1.1/r3dmol/man/m_viewer_spec.Rd |only r3dmol-0.1.1/r3dmol/tests/testthat/helper-functions.R |only r3dmol-0.1.1/r3dmol/tests/testthat/test-sel.R |only r3dmol-0.1.1/r3dmol/tests/testthat/test-style.R |only r3dmol-0.1.1/r3dmol/tests/testthat/test-view-options.R |only r3dmol-0.1.1/r3dmol/vignettes/r3dmol.Rmd | 58 +- r3dmol-0.1.1/r3dmol/vignettes/style-functions.Rmd |only 71 files changed, 932 insertions(+), 588 deletions(-)
Title: Functions to Efficiently Access NFL Play by Play Data
Description: A set of functions to access National Football
League play-by-play data from <https://www.nfl.com/>.
Author: Sebastian Carl [aut],
Ben Baldwin [cre, aut],
Lee Sharpe [ctb],
Maksim Horowitz [ctb],
Ron Yurko [ctb],
Samuel Ventura [ctb],
Tan Ho [ctb]
Maintainer: Ben Baldwin <bbaldwin206@gmail.com>
Diff between nflfastR versions 3.2.0 dated 2020-11-20 and 4.0.0 dated 2021-02-15
nflfastR-3.2.0/nflfastR/R/helper_scrape_cdns.R |only nflfastR-3.2.0/nflfastR/R/helper_scrape_highlights.R |only nflfastR-4.0.0/nflfastR/DESCRIPTION | 37 nflfastR-4.0.0/nflfastR/MD5 | 108 +- nflfastR-4.0.0/nflfastR/NAMESPACE | 53 - nflfastR-4.0.0/nflfastR/NEWS.md | 51 + nflfastR-4.0.0/nflfastR/R/build_nflfastR_pbp.R | 101 +- nflfastR-4.0.0/nflfastR/R/data_documentation.R | 17 nflfastR-4.0.0/nflfastR/R/ep_wp_calculators.R | 72 + nflfastR-4.0.0/nflfastR/R/helper_add_cp_cpoe.R | 9 nflfastR-4.0.0/nflfastR/R/helper_add_ep_wp.R | 439 ++++------ nflfastR-4.0.0/nflfastR/R/helper_add_fixed_drives.R | 15 nflfastR-4.0.0/nflfastR/R/helper_add_game_data.R | 69 - nflfastR-4.0.0/nflfastR/R/helper_add_nflscrapr_mutations.R | 90 +- nflfastR-4.0.0/nflfastR/R/helper_add_series_data.R | 5 nflfastR-4.0.0/nflfastR/R/helper_add_xpass.R | 69 - nflfastR-4.0.0/nflfastR/R/helper_add_xyac.R | 39 nflfastR-4.0.0/nflfastR/R/helper_additional_functions.R | 95 +- nflfastR-4.0.0/nflfastR/R/helper_database_functions.R | 60 - nflfastR-4.0.0/nflfastR/R/helper_decode_player_ids.R | 80 - nflfastR-4.0.0/nflfastR/R/helper_get_scheds_and_rosters.R | 11 nflfastR-4.0.0/nflfastR/R/helper_scrape_gc.R | 69 - nflfastR-4.0.0/nflfastR/R/helper_scrape_nfl.R | 361 +------- nflfastR-4.0.0/nflfastR/R/helper_tidy_play_stats.R | 301 ------ nflfastR-4.0.0/nflfastR/R/helper_variable_selector.R | 21 nflfastR-4.0.0/nflfastR/R/load_pbp.R |only nflfastR-4.0.0/nflfastR/R/nflfastR-package.R |only nflfastR-4.0.0/nflfastR/R/sysdata.rda |binary nflfastR-4.0.0/nflfastR/R/top-level_scraper.R | 411 ++++----- nflfastR-4.0.0/nflfastR/R/utils.R | 199 ++-- nflfastR-4.0.0/nflfastR/README.md | 79 - nflfastR-4.0.0/nflfastR/data/field_descriptions.rda |only nflfastR-4.0.0/nflfastR/data/stat_ids.rda |only nflfastR-4.0.0/nflfastR/man/add_qb_epa.Rd | 2 nflfastR-4.0.0/nflfastR/man/add_xpass.Rd | 11 nflfastR-4.0.0/nflfastR/man/add_xyac.Rd | 2 nflfastR-4.0.0/nflfastR/man/build_nflfastR_pbp.Rd | 60 - nflfastR-4.0.0/nflfastR/man/calculate_expected_points.Rd | 20 nflfastR-4.0.0/nflfastR/man/calculate_win_probability.Rd | 27 nflfastR-4.0.0/nflfastR/man/clean_pbp.Rd | 23 nflfastR-4.0.0/nflfastR/man/decode_player_ids.Rd | 30 nflfastR-4.0.0/nflfastR/man/fast_scraper.Rd | 85 + nflfastR-4.0.0/nflfastR/man/fast_scraper_roster.Rd | 16 nflfastR-4.0.0/nflfastR/man/fast_scraper_schedules.Rd | 17 nflfastR-4.0.0/nflfastR/man/field_descriptions.Rd |only nflfastR-4.0.0/nflfastR/man/figures/lifecycle-archived.svg |only nflfastR-4.0.0/nflfastR/man/figures/lifecycle-defunct.svg |only nflfastR-4.0.0/nflfastR/man/figures/lifecycle-deprecated.svg |only nflfastR-4.0.0/nflfastR/man/figures/lifecycle-experimental.svg |only nflfastR-4.0.0/nflfastR/man/figures/lifecycle-maturing.svg |only nflfastR-4.0.0/nflfastR/man/figures/lifecycle-questioning.svg |only nflfastR-4.0.0/nflfastR/man/figures/lifecycle-stable.svg |only nflfastR-4.0.0/nflfastR/man/figures/lifecycle-superseded.svg |only nflfastR-4.0.0/nflfastR/man/figures/logo.png |binary nflfastR-4.0.0/nflfastR/man/load_pbp.Rd |only nflfastR-4.0.0/nflfastR/man/nflfastR-package.Rd |only nflfastR-4.0.0/nflfastR/man/stat_ids.Rd |only nflfastR-4.0.0/nflfastR/man/teams_colors_logos.Rd | 24 nflfastR-4.0.0/nflfastR/man/update_db.Rd | 18 nflfastR-4.0.0/nflfastR/tests/testthat.R | 2 nflfastR-4.0.0/nflfastR/tests/testthat/helpers.R | 9 nflfastR-4.0.0/nflfastR/tests/testthat/test-columns.R | 10 nflfastR-4.0.0/nflfastR/tests/testthat/test-schedule.R | 6 nflfastR-4.0.0/nflfastR/tests/testthat/test-scrapers.R | 27 64 files changed, 1451 insertions(+), 1799 deletions(-)
Title: Clean and Analyze Continuous Glucose Monitor Data
Description: This code provides several different functions for cleaning and analyzing continuous glucose monitor data. Currently it works with 'Dexcom', 'iPro 2', 'Diasend', 'Libre', or 'Carelink' data. The cleandata() function takes a directory of CGM data files and prepares them for analysis. cgmvariables() iterates through a directory of cleaned CGM data files and produces a single spreadsheet with data for each file in either rows or columns. The column format of this spreadsheet is compatible with REDCap data upload. cgmreport() also iterates through a directory of cleaned data, and produces PDFs of individual and aggregate AGP plots. Please visit <https://github.com/childhealthbiostatscore/R-Packages/> to download the new-user guide.
Author: Tim Vigers [aut, cre]
Maintainer: Tim Vigers <tim.b.vigers@gmail.com>
Diff between cgmanalysis versions 2.7 dated 2020-04-30 and 2.7.1 dated 2021-02-15
DESCRIPTION | 10 - MD5 | 10 - R/cgmvariables.R | 14 +- R/cleandata.R | 357 +++++++++++++++++++++++++--------------------------- inst/CITATION | 2 man/cgmvariables.Rd | 2 6 files changed, 198 insertions(+), 197 deletions(-)
Title: Statistics for Matrix Distributions
Description: Tools for homogeneous and in-homogeneous phase-type distributions.
Methods for functional evaluation, simulation and estimation using the
expectation-maximization (EM) algorithm are provided.
The methods of this package are based on the following references.
Asmussen, S., Nerman, O., & Olsson, M. (1996) <https://www.jstor.org/stable/4616418>,
Olsson, M. (1996) <https://www.jstor.org/stable/4616419>.
Albrecher, H., & Bladt, M. (2019) <doi:10.1017/jpr.2019.60>
Albrecher, H., Bladt, M., & Yslas, J. (2020) <doi:10.1111/sjos.12505>
Bladt, M., & Yslas, J. (2020) <arXiv:2011.03219>.
Author: Martin Bladt [aut, cre],
Jorge Yslas [aut]
Maintainer: Martin Bladt <martinbladt@gmail.com>
Diff between matrixdist versions 1.0 dated 2021-01-08 and 1.0.1 dated 2021-02-15
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- src/matrix_functions.cpp | 8 ++++---- 3 files changed, 11 insertions(+), 11 deletions(-)
Title: Predict Gender from Brazilian First Names
Description: A method to predict and report gender from Brazilian first names
using the Brazilian Institute of Geography and Statistics' Census data.
Author: Fernando Meireles [aut, cre]
Maintainer: Fernando Meireles <fmeireles@ufmg.br>
Diff between genderBR versions 1.1.0 dated 2018-04-17 and 1.1.1 dated 2021-02-15
DESCRIPTION | 10 +++++----- MD5 | 20 +++++++++++--------- NAMESPACE | 5 ++--- NEWS.md | 10 ++++++++++ R/get_gender.R | 18 +++++++++++------- R/map_gender.R | 12 +++++------- R/utils-pipe.R |only R/utils.R | 14 +++++++++----- README.md | 44 ++++++++++++++++++++++---------------------- man/get_gender.Rd | 10 ++++++---- man/map_gender.Rd | 2 +- man/pipe.Rd |only 12 files changed, 82 insertions(+), 63 deletions(-)
Title: 3D Visualization Using OpenGL
Description: Provides medium to high level functions for 3D interactive graphics, including
functions modelled on base graphics (plot3d(), etc.) as well as functions for
constructing representations of geometric objects (cube3d(), etc.). Output
may be on screen using OpenGL, or to various standard 3D file formats including
WebGL, PLY, OBJ, STL as well as 2D image formats, including PNG, Postscript, SVG, PGF.
Author: Daniel Adler <dadler@uni-goettingen.de>, Duncan Murdoch <murdoch.duncan@gmail.com>, and others (see README)
Maintainer: Duncan Murdoch <murdoch.duncan@gmail.com>
Diff between rgl versions 0.105.12 dated 2021-02-14 and 0.105.13 dated 2021-02-15
DESCRIPTION | 6 +- MD5 | 24 +++++----- inst/NEWS | 2 inst/doc/WebGL.html | 26 +++++----- inst/doc/rgl.html | 36 +++++++-------- inst/doc/transparency.html | 16 +++--- src/Makevars.in | 2 src/Viewpoint.cpp | 6 +- src/Viewpoint.h | 2 src/gui.cpp | 4 - src/gui.h | 2 src/render.cpp | 10 +++- src/subscene.cpp | 108 ++++++++++++++++++++++----------------------- 13 files changed, 125 insertions(+), 119 deletions(-)
Title: Graphic Devices Based on AGG
Description: Anti-Grain Geometry (AGG) is a high-quality and high-performance
2D drawing library. The 'ragg' package provides a set of graphic devices
based on AGG to use as alternative to the raster devices provided through
the 'grDevices' package.
Author: Thomas Lin Pedersen [cre, aut]
(<https://orcid.org/0000-0002-5147-4711>),
Maxim Shemanarev [aut, cph] (Author of AGG),
Tony Juricic [ctb, cph] (Contributor to AGG),
Milan Marusinec [ctb, cph] (Contributor to AGG),
Spencer Garrett [ctb] (Contributor to AGG),
RStudio [cph]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@rstudio.com>
Diff between ragg versions 0.4.1 dated 2021-01-11 and 1.1.0 dated 2021-02-15
DESCRIPTION | 8 MD5 | 58 +++--- NAMESPACE | 8 NEWS.md | 19 +- R/aaa.R | 16 + R/agg_dev.R | 9 - README.md | 10 - configure | 8 man/agg_capture.Rd | 9 - man/agg_jpeg.Rd | 9 - man/agg_png.Rd | 9 - man/agg_ppm.Rd | 9 - man/agg_supertransparent.Rd | 9 - man/agg_tiff.Rd | 9 - man/figures/README-unnamed-chunk-3-1.png |binary man/figures/README-unnamed-chunk-4-1.png |binary man/reexports.Rd |only src/AggDevice.h | 94 +++++----- src/AggDevice16.h | 62 ------- src/Makevars.in | 4 src/Makevars.win | 23 +- src/agg/include/agg_font_cache_manager.h | 7 src/agg/include/agg_font_freetype.h | 4 src/agg/include/agg_image_filters.h | 2 src/agg/src/agg_font_freetype.cpp | 167 +++++++++++++------ src/agg/src/agg_image_filters.cpp |only src/init_device.h | 7 src/ragg.h | 1 src/text_renderer.h | 272 +++++++++++++++++++++++-------- tests/testthat/test-text.R | 2 tools/winlibs.R | 13 - 31 files changed, 537 insertions(+), 311 deletions(-)
More information about IntervalSurgeon at CRAN
Permanent link
Title: A Collection of R Functions for Directional Data Analysis
Description: A collection of functions for directional data (including massive, with millions of observations, data) analysis. Hypothesis testing, discriminant and regression analysis, MLE of distributions and more are included. The standard textbook for such data is the "Directional Statistics" by Mardia, K. V. and Jupp, P. E. (2000). Other references include a) Phillip J. Paine, Simon P. Preston Michail Tsagris and Andrew T. A. Wood (2018). An elliptically symmetric angular Gaussian distribution. Statistics and Computing 28(3): 689-697. <doi:10.1007/s11222-017-9756-4>. b) Tsagris M. and Alenazi A. (2019). Comparison of discriminant analysis methods on the sphere. Communications in Statistics: Case Studies, Data Analysis and Applications 5(4):467--491. <doi:10.1080/23737484.2019.1684854>. c) P. J. Paine, S. P. Preston, M. Tsagris and Andrew T. A. Wood (2020). Spherical regression models with general covariates and anisotropic errors. Statistics and Computing 30(1): 153--165. <doi:10.1007/s11222-019-09872-2>.
Author: Michail Tsagris, Giorgos Athineou, Anamul Sajib, Eli Amson, Micah J. Waldstein
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between Directional versions 4.6 dated 2021-01-09 and 4.7 dated 2021-02-15
Directional-4.6/Directional/man/ggvm.mle.Rd |only Directional-4.7/Directional/DESCRIPTION | 8 ++-- Directional-4.7/Directional/MD5 | 17 ++++----- Directional-4.7/Directional/R/cardio.mle.R |only Directional-4.7/Directional/R/circ.summary.R | 6 +-- Directional-4.7/Directional/R/circbeta.mle.R | 2 - Directional-4.7/Directional/R/dcardio.R |only Directional-4.7/Directional/man/Directional-package.Rd | 8 ++-- Directional-4.7/Directional/man/circ.summary.Rd | 4 +- Directional-4.7/Directional/man/dvm.Rd | 6 ++- Directional-4.7/Directional/man/spml.mle.Rd | 31 +++++++++++++---- 11 files changed, 52 insertions(+), 30 deletions(-)
Title: HTTP Client
Description: A simple HTTP client, with tools for making HTTP requests,
and mocking HTTP requests. The package is built on R6, and takes
inspiration from Ruby's 'faraday' gem (<https://rubygems.org/gems/faraday>).
The package name is a play on curl, the widely used command line tool
for HTTP, and this package is built on top of the R package 'curl', an
interface to 'libcurl' (<https://curl.se/libcurl/>).
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between crul versions 1.0.0 dated 2020-07-30 and 1.1.0 dated 2021-02-15
crul-1.0.0/crul/README.md |only crul-1.1.0/crul/DESCRIPTION | 10 crul-1.1.0/crul/LICENSE | 2 crul-1.1.0/crul/MD5 | 68 +-- crul-1.1.0/crul/NEWS.md | 17 crul-1.1.0/crul/R/asyncvaried.R | 2 crul-1.1.0/crul/R/client.R | 8 crul-1.1.0/crul/R/content-types.R | 4 crul-1.1.0/crul/R/headers.R | 21 - crul-1.1.0/crul/R/make_url.R | 2 crul-1.1.0/crul/R/paginator.R | 219 ++++++++--- crul-1.1.0/crul/R/proxies.R | 2 crul-1.1.0/crul/R/response.R | 6 crul-1.1.0/crul/R/zzz.R | 8 crul-1.1.0/crul/build/vignette.rds |binary crul-1.1.0/crul/inst/doc/async.html | 10 crul-1.1.0/crul/inst/doc/best-practices-api-packages.Rmd | 2 crul-1.1.0/crul/inst/doc/best-practices-api-packages.html | 12 crul-1.1.0/crul/inst/doc/choosing-a-client.html | 10 crul-1.1.0/crul/inst/doc/crul.html | 10 crul-1.1.0/crul/inst/doc/curl-options.Rmd | 16 crul-1.1.0/crul/inst/doc/curl-options.html | 26 - crul-1.1.0/crul/inst/doc/how-to-use-crul.html | 10 crul-1.1.0/crul/man/HttpClient.Rd | 32 + crul-1.1.0/crul/man/Paginator.Rd | 123 ++++-- crul-1.1.0/crul/man/content-types.Rd | 4 crul-1.1.0/crul/man/proxies.Rd | 2 crul-1.1.0/crul/tests/testthat/test-content-type.R | 6 crul-1.1.0/crul/tests/testthat/test-head_parse.R |only crul-1.1.0/crul/tests/testthat/test-paginator.R | 91 ++-- crul-1.1.0/crul/tests/testthat/test-url_fetch.R | 39 + crul-1.1.0/crul/tests/testthat/test-utils.R | 9 crul-1.1.0/crul/vignettes/best-practices-api-packages.Rmd | 2 crul-1.1.0/crul/vignettes/best-practices-api-packages.Rmd.og | 2 crul-1.1.0/crul/vignettes/curl-options.Rmd | 16 crul-1.1.0/crul/vignettes/curl-options.Rmd.og | 14 36 files changed, 568 insertions(+), 237 deletions(-)
Title: Versatile Curation of Table Metadata
Description: A YAML-based
mechanism for working with table metadata. It supports
compact syntax for creating, modifying, viewing, exporting,
importing, displaying, and plotting metadata coded as column
attributes. The 'yamlet' dialect is valid 'YAML' with
defaults and conventions chosen to improve readability.
See ?yamlet, ?decorate.data.frame and ?modify.default.
See ?read_yamlet ?write_yamlet, ?io_csv, and ?ggplot.decorated.
Author: Tim Bergsma
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between yamlet versions 0.5.3 dated 2021-01-21 and 0.6.5 dated 2021-02-15
yamlet-0.5.3/yamlet/R/codelist.R |only yamlet-0.5.3/yamlet/man/as_classified.Rd |only yamlet-0.5.3/yamlet/man/as_classified.factor.Rd |only yamlet-0.5.3/yamlet/man/codelist.Rd |only yamlet-0.5.3/yamlet/man/codelist.data.frame.Rd |only yamlet-0.5.3/yamlet/man/factorize_codelist.Rd |only yamlet-0.5.3/yamlet/man/factorize_codelist.character.Rd |only yamlet-0.5.3/yamlet/man/factorize_codelist.data.frame.Rd |only yamlet-0.5.3/yamlet/man/factorize_codelist.default.Rd |only yamlet-0.5.3/yamlet/man/factorize_codelist.factor.Rd |only yamlet-0.5.3/yamlet/man/ggready.resolved.Rd |only yamlet-0.5.3/yamlet/man/print.decorations.Rd |only yamlet-0.6.5/yamlet/DESCRIPTION | 8 yamlet-0.6.5/yamlet/MD5 | 216 +++++---- yamlet-0.6.5/yamlet/NAMESPACE | 41 + yamlet-0.6.5/yamlet/R/classified.R | 335 ++++++++++++++- yamlet-0.6.5/yamlet/R/decorate.R | 115 ++--- yamlet-0.6.5/yamlet/R/decorated.R |only yamlet-0.6.5/yamlet/R/desolve.R |only yamlet-0.6.5/yamlet/R/dplyr.R | 24 - yamlet-0.6.5/yamlet/R/explicit_guide.R | 81 +++ yamlet-0.6.5/yamlet/R/factorize_codelist.R | 232 +++++----- yamlet-0.6.5/yamlet/R/ggplot.R | 13 yamlet-0.6.5/yamlet/R/ggplot_ggready.R | 4 yamlet-0.6.5/yamlet/R/ggready.R | 83 +-- yamlet-0.6.5/yamlet/R/io_res.R | 19 yamlet-0.6.5/yamlet/R/io_table.R | 7 yamlet-0.6.5/yamlet/R/io_yamlet.R | 1 yamlet-0.6.5/yamlet/R/mimic.R |only yamlet-0.6.5/yamlet/R/package.R | 12 yamlet-0.6.5/yamlet/R/proxy.R |only yamlet-0.6.5/yamlet/R/resolve.R | 10 yamlet-0.6.5/yamlet/R/singularity.R | 7 yamlet-0.6.5/yamlet/R/sub_units.R | 2 yamlet-0.6.5/yamlet/R/unclassified.R |only yamlet-0.6.5/yamlet/R/xtable.R | 1 yamlet-0.6.5/yamlet/R/yamlet.R | 22 yamlet-0.6.5/yamlet/build/vignette.rds |binary yamlet-0.6.5/yamlet/inst/doc/yamlet-introduction.html | 140 ++++-- yamlet-0.6.5/yamlet/man/anti_join.decorated.Rd | 1 yamlet-0.6.5/yamlet/man/arrange.decorated.Rd | 1 yamlet-0.6.5/yamlet/man/as.character.yamlet.Rd | 10 yamlet-0.6.5/yamlet/man/as_decorated.Rd | 28 - yamlet-0.6.5/yamlet/man/as_decorated.default.Rd | 4 yamlet-0.6.5/yamlet/man/as_yamlet.Rd | 6 yamlet-0.6.5/yamlet/man/as_yamlet.character.Rd | 5 yamlet-0.6.5/yamlet/man/as_yamlet.data.frame.Rd | 12 yamlet-0.6.5/yamlet/man/as_yamlet.list.Rd | 10 yamlet-0.6.5/yamlet/man/as_yamlet.yam.Rd | 5 yamlet-0.6.5/yamlet/man/as_yamlet.yamlet.Rd | 10 yamlet-0.6.5/yamlet/man/c.classified.Rd |only yamlet-0.6.5/yamlet/man/classified.Rd |only yamlet-0.6.5/yamlet/man/classified.data.frame.Rd |only yamlet-0.6.5/yamlet/man/classified.default.Rd |only yamlet-0.6.5/yamlet/man/decorate.Rd | 3 yamlet-0.6.5/yamlet/man/decorate.character.Rd | 4 yamlet-0.6.5/yamlet/man/decorate.data.frame.Rd | 4 yamlet-0.6.5/yamlet/man/decorate.list.Rd | 4 yamlet-0.6.5/yamlet/man/decorations.Rd | 5 yamlet-0.6.5/yamlet/man/decorations.data.frame.Rd | 16 yamlet-0.6.5/yamlet/man/desolve.Rd |only yamlet-0.6.5/yamlet/man/desolve.decorated.Rd |only yamlet-0.6.5/yamlet/man/explicit_guide.Rd | 4 yamlet-0.6.5/yamlet/man/explicit_guide.data.frame.Rd | 8 yamlet-0.6.5/yamlet/man/explicit_guide.yamlet.Rd | 5 yamlet-0.6.5/yamlet/man/filter.decorated.Rd | 1 yamlet-0.6.5/yamlet/man/full_join.decorated.Rd | 1 yamlet-0.6.5/yamlet/man/ggplot.decorated.Rd | 11 yamlet-0.6.5/yamlet/man/ggplot.ggready.Rd | 5 yamlet-0.6.5/yamlet/man/ggplot_build.ggready_ggplot.Rd | 1 yamlet-0.6.5/yamlet/man/ggready.Rd | 3 yamlet-0.6.5/yamlet/man/ggready.data.frame.Rd | 1 yamlet-0.6.5/yamlet/man/ggready.decorated.Rd | 7 yamlet-0.6.5/yamlet/man/group_by.decorated.Rd | 1 yamlet-0.6.5/yamlet/man/implicit_guide.Rd |only yamlet-0.6.5/yamlet/man/implicit_guide.data.frame.Rd |only yamlet-0.6.5/yamlet/man/inner_join.decorated.Rd | 1 yamlet-0.6.5/yamlet/man/io_csv.character.Rd | 3 yamlet-0.6.5/yamlet/man/io_csv.data.frame.Rd | 3 yamlet-0.6.5/yamlet/man/io_res.Rd | 3 yamlet-0.6.5/yamlet/man/io_res.character.Rd | 7 yamlet-0.6.5/yamlet/man/io_table.character.Rd | 3 yamlet-0.6.5/yamlet/man/io_table.data.frame.Rd | 6 yamlet-0.6.5/yamlet/man/io_yamlet.Rd | 1 yamlet-0.6.5/yamlet/man/io_yamlet.character.Rd | 3 yamlet-0.6.5/yamlet/man/io_yamlet.data.frame.Rd | 3 yamlet-0.6.5/yamlet/man/is_parseable.default.Rd | 3 yamlet-0.6.5/yamlet/man/left_join.decorated.Rd | 1 yamlet-0.6.5/yamlet/man/mimic.Rd |only yamlet-0.6.5/yamlet/man/mimic.classified.Rd |only yamlet-0.6.5/yamlet/man/mimic.default.Rd |only yamlet-0.6.5/yamlet/man/modify.default.Rd | 3 yamlet-0.6.5/yamlet/man/mutate.decorated.Rd | 1 yamlet-0.6.5/yamlet/man/names-set-.decorated.Rd |only yamlet-0.6.5/yamlet/man/print.ggready_ggplot.Rd | 1 yamlet-0.6.5/yamlet/man/print.yamlet.Rd | 5 yamlet-0.6.5/yamlet/man/promote.Rd | 2 yamlet-0.6.5/yamlet/man/promote.default.Rd | 6 yamlet-0.6.5/yamlet/man/proxy.Rd |only yamlet-0.6.5/yamlet/man/proxy.factor.Rd |only yamlet-0.6.5/yamlet/man/read_yamlet.Rd | 3 yamlet-0.6.5/yamlet/man/redecorate.Rd | 7 yamlet-0.6.5/yamlet/man/resolve.Rd | 2 yamlet-0.6.5/yamlet/man/resolve.decorated.Rd | 11 yamlet-0.6.5/yamlet/man/right_join.decorated.Rd | 1 yamlet-0.6.5/yamlet/man/select.decorated.Rd | 1 yamlet-0.6.5/yamlet/man/selected.default.Rd | 3 yamlet-0.6.5/yamlet/man/semi_join.decorated.Rd | 1 yamlet-0.6.5/yamlet/man/slice.decorated.Rd | 1 yamlet-0.6.5/yamlet/man/sub-.classified.Rd | 16 yamlet-0.6.5/yamlet/man/sub-.decorated.Rd | 19 yamlet-0.6.5/yamlet/man/sub-.yamlet.Rd | 10 yamlet-0.6.5/yamlet/man/sub-sub-.classified.Rd |only yamlet-0.6.5/yamlet/man/sub-sub-.decorated.Rd |only yamlet-0.6.5/yamlet/man/sub-subset-.classified.Rd |only yamlet-0.6.5/yamlet/man/sub-subset-.decorated.Rd |only yamlet-0.6.5/yamlet/man/sub_units.Rd | 2 yamlet-0.6.5/yamlet/man/subset-.classified.Rd |only yamlet-0.6.5/yamlet/man/subset-.decorated.Rd |only yamlet-0.6.5/yamlet/man/summarise.decorated.Rd | 1 yamlet-0.6.5/yamlet/man/summarize.decorated.Rd | 1 yamlet-0.6.5/yamlet/man/to_yamlet.Rd | 1 yamlet-0.6.5/yamlet/man/unclassified.Rd |only yamlet-0.6.5/yamlet/man/unclassified.classified.Rd |only yamlet-0.6.5/yamlet/man/unclassified.data.frame.Rd |only yamlet-0.6.5/yamlet/man/write_yamlet.Rd | 3 yamlet-0.6.5/yamlet/man/xtable.decorated.Rd | 1 yamlet-0.6.5/yamlet/man/yamlet.Rd | 12 yamlet-0.6.5/yamlet/tests/testthat/test-yamlet.R | 212 +++++++++ 129 files changed, 1335 insertions(+), 577 deletions(-)
Title: Kinetic Evaluation of Chemical Degradation Data
Description: Calculation routines based on the FOCUS Kinetics Report (2006,
2014). Includes a function for conveniently defining differential equation
models, model solution based on eigenvalues if possible or using numerical
solvers. If a C compiler (on windows: 'Rtools') is installed, differential
equation models are solved using automatically generated C functions. Please
note that no warranty is implied for correctness of results or fitness for a
particular purpose.
Author: Johannes Ranke [aut, cre, cph]
(<https://orcid.org/0000-0003-4371-6538>),
Katrin Lindenberger [ctb] (contributed to mkinresplot()),
René Lehmann [ctb] (ilr() and invilr()),
Eurofins Regulatory AG [cph] (copyright for some of the contributions
of JR 2012-2014)
Maintainer: Johannes Ranke <jranke@uni-bremen.de>
Diff between mkin versions 1.0.1 dated 2021-02-10 and 1.0.3 dated 2021-02-15
DESCRIPTION | 8 MD5 | 52 +++--- NEWS.md | 8 R/mkinfit.R | 11 + R/sigma_twocomp.R | 5 README.md | 99 ++++++++--- build/partial.rdb |binary inst/doc/FOCUS_D.html | 11 - inst/doc/FOCUS_D.rmd | 2 inst/doc/FOCUS_L.html | 55 +++--- inst/doc/FOCUS_L.rmd | 2 inst/doc/mkin.html | 39 ++-- inst/doc/mkin.rmd | 96 +++++------ inst/doc/twa.html | 3 inst/doc/twa.rmd | 2 man/sigma_twocomp.Rd | 4 vignettes/FOCUS_D.rmd | 2 vignettes/FOCUS_L.rmd | 2 vignettes/mkin.rmd | 96 +++++------ vignettes/references.bib | 18 ++ vignettes/twa.rmd | 2 vignettes/web_only/FOCUS_Z.html | 136 +++++++++------- vignettes/web_only/FOCUS_Z.rmd | 2 vignettes/web_only/NAFTA_examples.html | 280 ++++++++++++++++++--------------- vignettes/web_only/NAFTA_examples.rmd | 2 vignettes/web_only/benchmarks.html | 142 ++++++++++++++-- vignettes/web_only/benchmarks.rmd | 2 27 files changed, 654 insertions(+), 427 deletions(-)
Title: Comprehensive Research Synthesis Tools for Systematic Reviews
and Meta-Analysis
Description: Functionalities for facilitating systematic reviews, data
extractions, and meta-analyses. It includes a GUI (graphical user interface)
to help screen the abstracts and titles of bibliographic data; tools to assign
screening effort across multiple collaborators/reviewers and to assess inter-
reviewer reliability; tools to help automate the download and retrieval of
journal PDF articles from online databases; figure and image extractions
from PDFs; web scraping of citations; automated and manual data extraction
from scatter-plot and bar-plot images; PRISMA (Preferred Reporting Items for
Systematic Reviews and Meta-Analyses) flow diagrams; simple imputation tools
to fill gaps in incomplete or missing study parameters; generation of random
effects sizes for Hedges' d, log response ratio, odds ratio, and correlation
coefficients for Monte Carlo experiments; covariance equations for modelling
dependencies among multiple effect sizes (e.g., effect sizes with a common
control); and finally summaries that replicate analyses and outputs from
widely used but no longer updated meta-analysis software (i.e., metawin).
Funding for this package was supported by National Science Foundation (NSF)
grants DBI-1262545 and DEB-1451031. CITE: Lajeunesse, M.J. (2016)
Facilitating systematic reviews, data extraction and meta-analysis with the
metagear package for R. Methods in Ecology and Evolution 7, 323-330
<doi:10.1111/2041-210X.12472>.
Author: Marc J. Lajeunesse [aut, cre] (<https://orcid.org/0000-0002-9678-2080>)
Maintainer: Marc J. Lajeunesse <lajeunesse@usf.edu>
Diff between metagear versions 0.6 dated 2020-04-11 and 0.7 dated 2021-02-15
metagear-0.6/metagear/data/Kam_et_al_2003_Fig2.rda |only metagear-0.6/metagear/data/Kortum_and_Acymyan_2013_Fig4.rda |only metagear-0.6/metagear/inst/doc/metagear_basic_vignette_v0.6.pdf |only metagear-0.6/metagear/inst/doc/metagear_basic_vignette_v0.6.pdf.asis |only metagear-0.6/metagear/man/Kam_et_al_2003_Fig2.Rd |only metagear-0.6/metagear/man/Kortum_and_Acymyan_2013_Fig4.Rd |only metagear-0.6/metagear/tests/testthat/test-effort_summary.R |only metagear-0.6/metagear/tests/testthat/test-random_missingness.R |only metagear-0.6/metagear/vignettes/metagear_basic_vignette_v0.6.Rmd |only metagear-0.6/metagear/vignettes/metagear_basic_vignette_v0.6.pdf.asis |only metagear-0.7/metagear/DESCRIPTION | 23 +- metagear-0.7/metagear/MD5 | 84 +++++----- metagear-0.7/metagear/NAMESPACE | 25 -- metagear-0.7/metagear/NEWS.md | 10 + metagear-0.7/metagear/R/PDF_extractImages.R | 20 -- metagear-0.7/metagear/R/PDF_utils.R | 33 ++- metagear-0.7/metagear/R/abstract_screener.R | 2 metagear-0.7/metagear/R/figure_add.R | 6 metagear-0.7/metagear/R/figure_barPlot.R | 27 +-- metagear-0.7/metagear/R/figure_detectAllPoints.R | 11 - metagear-0.7/metagear/R/figure_detectAxis.R | 20 +- metagear-0.7/metagear/R/figure_display.R | 11 - metagear-0.7/metagear/R/figure_displayDetectedPoints.R | 20 +- metagear-0.7/metagear/R/figure_displayDetections.R | 12 - metagear-0.7/metagear/R/figure_extractDetectedPoints.R | 11 - metagear-0.7/metagear/R/figure_extractXAxis.R |only metagear-0.7/metagear/R/figure_manual_extraction.R |only metagear-0.7/metagear/R/figure_read.R | 8 metagear-0.7/metagear/R/figure_removeOutlyingPoints.R | 13 - metagear-0.7/metagear/R/figure_scatterPlot.R | 25 +- metagear-0.7/metagear/R/figure_split.R | 9 - metagear-0.7/metagear/R/figure_transformByColors.R | 9 - metagear-0.7/metagear/R/figure_transformToBinary.R | 8 metagear-0.7/metagear/R/figure_utils.R | 12 - metagear-0.7/metagear/R/figure_write.R | 6 metagear-0.7/metagear/R/metagear.R | 6 metagear-0.7/metagear/R/metagear_data.R | 30 +-- metagear-0.7/metagear/R/metagear_utils.R | 30 +++ metagear-0.7/metagear/R/zzz.R | 41 ++-- metagear-0.7/metagear/README.md | 7 metagear-0.7/metagear/build/vignette.rds |binary metagear-0.7/metagear/inst/doc/metagear_basic_vignette_v0.7.pdf |only metagear-0.7/metagear/inst/doc/metagear_basic_vignette_v0.7.pdf.asis |only metagear-0.7/metagear/inst/images |only metagear-0.7/metagear/man/Kam_et_al_2003_Fig2.jpg.Rd |only metagear-0.7/metagear/man/Kortum_and_Acymyan_2013_Fig4.jpg.Rd |only metagear-0.7/metagear/man/abstract_screener.Rd | 2 metagear-0.7/metagear/man/figure_add.Rd | 22 +- metagear-0.7/metagear/man/figure_detectAxis.Rd | 16 + metagear-0.7/metagear/man/metagear-package.Rd | 6 metagear-0.7/metagear/vignettes/metagear_basic_vignette_v0.7.Rmd |only metagear-0.7/metagear/vignettes/metagear_basic_vignette_v0.7.pdf.asis |only 52 files changed, 332 insertions(+), 233 deletions(-)
Title: Manage the Life Cycle of your Package Functions
Description: Manage the life cycle of your exported functions
with shared conventions, documentation badges, and user-friendly
deprecation warnings.
Author: Lionel Henry [aut, cre],
Hadley Wickham [aut] (<https://orcid.org/0000-0003-4757-117X>),
RStudio [cph]
Maintainer: Lionel Henry <lionel@rstudio.com>
Diff between lifecycle versions 0.2.0 dated 2020-03-06 and 1.0.0 dated 2021-02-15
lifecycle-0.2.0/lifecycle/R/signal-deprecated.R |only lifecycle-0.2.0/lifecycle/build/lifecycle.pdf |only lifecycle-0.2.0/lifecycle/inst/doc/lifecycle.R |only lifecycle-0.2.0/lifecycle/inst/doc/lifecycle.Rmd |only lifecycle-0.2.0/lifecycle/inst/doc/lifecycle.html |only lifecycle-0.2.0/lifecycle/tests/testthat/error |only lifecycle-0.2.0/lifecycle/tests/testthat/test-signal-deprecated.R |only lifecycle-0.2.0/lifecycle/vignettes/lifecycle.Rmd |only lifecycle-1.0.0/lifecycle/DESCRIPTION | 49 +-- lifecycle-1.0.0/lifecycle/LICENSE |only lifecycle-1.0.0/lifecycle/MD5 | 91 +++--- lifecycle-1.0.0/lifecycle/NAMESPACE | 3 lifecycle-1.0.0/lifecycle/NEWS.md | 31 ++ lifecycle-1.0.0/lifecycle/R/badge.R | 133 +++------- lifecycle-1.0.0/lifecycle/R/deprecated.R |only lifecycle-1.0.0/lifecycle/R/expect.R | 14 - lifecycle-1.0.0/lifecycle/R/lifecycle-package.R | 20 - lifecycle-1.0.0/lifecycle/R/signal.R | 111 +++----- lifecycle-1.0.0/lifecycle/R/spec.R | 122 +++++---- lifecycle-1.0.0/lifecycle/R/utils.R | 15 - lifecycle-1.0.0/lifecycle/R/warning.R | 33 +- lifecycle-1.0.0/lifecycle/README.md | 34 +- lifecycle-1.0.0/lifecycle/build/vignette.rds |binary lifecycle-1.0.0/lifecycle/inst/doc/communicate.R |only lifecycle-1.0.0/lifecycle/inst/doc/communicate.Rmd |only lifecycle-1.0.0/lifecycle/inst/doc/communicate.html |only lifecycle-1.0.0/lifecycle/inst/doc/manage.R |only lifecycle-1.0.0/lifecycle/inst/doc/manage.Rmd |only lifecycle-1.0.0/lifecycle/inst/doc/manage.html |only lifecycle-1.0.0/lifecycle/inst/doc/stages.R |only lifecycle-1.0.0/lifecycle/inst/doc/stages.Rmd |only lifecycle-1.0.0/lifecycle/inst/doc/stages.html |only lifecycle-1.0.0/lifecycle/man/badge.Rd | 61 ++-- lifecycle-1.0.0/lifecycle/man/deprecate_soft.Rd | 103 ++++--- lifecycle-1.0.0/lifecycle/man/expect_deprecated.Rd | 15 - lifecycle-1.0.0/lifecycle/man/last_warnings.Rd | 7 lifecycle-1.0.0/lifecycle/man/lifecycle-package.Rd | 17 - lifecycle-1.0.0/lifecycle/man/signal_experimental.Rd | 33 -- lifecycle-1.0.0/lifecycle/man/signal_stage.Rd |only lifecycle-1.0.0/lifecycle/tests/testthat/_snaps |only lifecycle-1.0.0/lifecycle/tests/testthat/helper-lifecycle.R | 13 lifecycle-1.0.0/lifecycle/tests/testthat/output/test-warning-backtrace.txt | 37 +- lifecycle-1.0.0/lifecycle/tests/testthat/test-arg.R | 2 lifecycle-1.0.0/lifecycle/tests/testthat/test-badge.R |only lifecycle-1.0.0/lifecycle/tests/testthat/test-deprecated.R |only lifecycle-1.0.0/lifecycle/tests/testthat/test-expect.R | 1 lifecycle-1.0.0/lifecycle/tests/testthat/test-lifecycle.R | 71 +++-- lifecycle-1.0.0/lifecycle/tests/testthat/test-signal.R | 36 +- lifecycle-1.0.0/lifecycle/tests/testthat/test-spec.R | 79 +++-- lifecycle-1.0.0/lifecycle/tests/testthat/test-verbosity.R | 2 lifecycle-1.0.0/lifecycle/tests/testthat/test-warning.R | 11 lifecycle-1.0.0/lifecycle/vignettes/communicate.Rmd |only lifecycle-1.0.0/lifecycle/vignettes/figures/lifecycle-superseded.svg | 2 lifecycle-1.0.0/lifecycle/vignettes/figures/lifecycle.svg | 35 ++ lifecycle-1.0.0/lifecycle/vignettes/lifecycle.graffle |binary lifecycle-1.0.0/lifecycle/vignettes/manage.Rmd |only lifecycle-1.0.0/lifecycle/vignettes/stages.Rmd |only 57 files changed, 632 insertions(+), 549 deletions(-)
Title: Create Future 'EnergyPlus' Weather Files using 'CMIP6' Data
Description: Query, download climate change projection data from the 'CMIP6' (Coupled
Model Intercomparison Project Phase 6) project
<https://pcmdi.llnl.gov/CMIP6/> in the 'ESGF' (Earth System Grid Federation)
platform <https://esgf.llnl.gov>, and create future 'EnergyPlus'
<https://energyplus.net> Weather ('EPW') files adjusted from climate changes
using data from Global Climate Models ('GCM').
Author: Hongyuan Jia [aut, cre] (<https://orcid.org/0000-0002-0075-8183>),
Adrian Chong [aut] (<https://orcid.org/0000-0002-9486-4728>)
Maintainer: Hongyuan Jia <hongyuan.jia@bears-berkeley.sg>
Diff between epwshiftr versions 0.1.1 dated 2020-08-11 and 0.1.2 dated 2021-02-15
DESCRIPTION | 6 ++-- MD5 | 14 +++++----- NEWS.md | 37 +++++++++++++++++--------- R/esgf.R | 14 +++++++--- R/morph.R | 63 ++++++++++++++++++++++++++++++--------------- README.md | 6 +--- man/morphing_epw.Rd | 9 +++++- tests/testthat/test-esgf.R | 4 +- 8 files changed, 99 insertions(+), 54 deletions(-)
Title: Bayesian Inference for Directed Acyclic Graphs
Description: Implementation of a collection of MCMC methods for Bayesian structure learning
of directed acyclic graphs (DAGs), both from continuous and discrete data. For efficient
inference on larger DAGs, the space of DAGs is pruned according to the data. To filter
the search space, the algorithm employs a hybrid approach, combining constraint-based
learning with search and score. A reduced search space is initially defined on the basis
of a skeleton obtained by means of the PC-algorithm, and then iteratively improved with
search and score. Search and score is then performed following two approaches:
Order MCMC, or Partition MCMC.
The BGe score is implemented for continuous data and the BDe score is implemented
for binary data or categorical data. The algorithms may provide the maximum a posteriori
(MAP) graph or a sample (a collection of DAGs) from the posterior distribution given the data.
All algorithms are also applicable for structure learning and sampling for dynamic Bayesian networks.
References:
J. Kuipers, P. Suter and G. Moffa (2018) <arXiv:1803.07859v2>,
N. Friedman and D. Koller (2003) <doi:10.1023/A:1020249912095>,
D. Geiger and D. Heckerman (2002) <doi:10.1214/aos/1035844981>,
J. Kuipers and G. Moffa (2017) <doi:10.1080/01621459.2015.1133426>,
M. Kalisch et al.(2012) <doi:10.18637/jss.v047.i11>.
Author: Polina Suter [aut, cre], Jack Kuipers [aut]
Maintainer: Polina Suter <polina.suter@bsse.ethz.ch>
Diff between BiDAG versions 1.4.1 dated 2020-07-14 and 2.0.0 dated 2021-02-15
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Title: Extension to 'spatstat' for Large Datasets on a Linear Network
Description: Extension to the 'spatstat' family of packages, for analysing
large datasets of spatial points on a network. The geometrically-
corrected K function is computed using a memory-efficient
tree-based algorithm described by Rakshit, Baddeley and Nair (2019).
Author: Suman Rakshit [aut, cph] (<https://orcid.org/0000-0003-0052-128X>),
Adrian Baddeley [cre, cph] (<https://orcid.org/0000-0001-9499-8382>)
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.Knet versions 1.12-2 dated 2020-04-27 and 1.65-0 dated 2021-02-15
DESCRIPTION | 20 +++++++++++--------- MD5 | 19 ++++++++++--------- NAMESPACE | 3 ++- NEWS |only R/Knet.R | 2 +- R/Knetinhom.R | 2 +- build/partial.rdb |binary data/wacrashes.rda |binary man/Knet.Rd | 4 ++-- man/Knetinhom.Rd | 4 ++-- man/spatstat.Knet-package.Rd | 12 ++++++------ 11 files changed, 35 insertions(+), 31 deletions(-)
Title: Create Reports Using R and 'asciidoc'
Description: Inspired by Karl Broman`s reader on using 'knitr'
with 'asciidoc'
(<http://kbroman.org/knitr_knutshell/pages/asciidoc.html>), this is
merely a wrapper to 'knitr' and 'asciidoc'.
Author: Andreas Dominik Cullmann [aut, cre]
Maintainer: Andreas Dominik Cullmann <fvafrcu@mailbox.org>
Diff between rasciidoc versions 3.0.2 dated 2021-02-01 and 3.1.0 dated 2021-02-15
DESCRIPTION | 10 - MD5 | 19 + NEWS.md | 5 R/fritools.R |only R/internals.R | 24 -- R/render.R | 8 R/vignette_engine.R | 2 inst/NEWS.rd | 7 inst/doc/An_Introduction_to_rasciidoc.html | 28 +- inst/runit_tests/runit-knitr_internals_mod.R | 2 inst/runit_tests/runit-render.R | 269 +++++++++++++-------------- 11 files changed, 189 insertions(+), 185 deletions(-)
Title: Download and Read OpenStreetMap Data Extracts
Description: Find, download, convert and read Open Street Map data extracts
obtained from several providers.
Author: Andrea Gilardi [aut, cre] (<https://orcid.org/0000-0002-9424-7439>),
Robin Lovelace [aut] (<https://orcid.org/0000-0001-5679-6536>),
Barry Rowlingson [ctb] (<https://orcid.org/0000-0002-8586-6625>),
Salva Fernández [rev] (Salva reviewed the package (v. 0.1) for
rOpenSci, see
<https://github.com/ropensci/software-review/issues/395>),
Nicholas Potter [rev] (Nicholas reviewed the package (v. 0.1) for
rOpenSci, see
<https://github.com/ropensci/software-review/issues/395>)
Maintainer: Andrea Gilardi <andrea.gilardi@unimib.it>
Diff between osmextract versions 0.2.0 dated 2021-02-11 and 0.2.1 dated 2021-02-15
DESCRIPTION | 6 MD5 | 26 NEWS.md | 20 R/get.R | 2 R/read.R | 15 inst/doc/osmextract.html | 1334 +++++++++++++++--------------------- inst/doc/providers.html | 306 +------- inst/doc/providers_comparisons.html | 334 +-------- man/oe_find.Rd | 2 man/oe_get.Rd | 2 man/oe_match.Rd | 2 man/oe_read.Rd | 17 tests/testthat/test-get.R | 3 tests/testthat/test-read.R | 28 14 files changed, 742 insertions(+), 1355 deletions(-)
Title: Perform Monothetic Clustering with Extensions to Circular Data
Description: Implementation of the Monothetic Clustering
algorithm (Chavent, 1998 <doi:10.1016/S0167-8655(98)00087-7>) on
continuous data sets. A lot of extensions are included in the package,
including applying Monothetic clustering on data sets with circular
variables, visualizations with the results, and permutation and
cross-validation based tests to support the decision on the number of
clusters.
Author: Tan Tran [aut, cre] (<https://orcid.org/0000-0001-9881-6339>),
Brian McGuire [aut],
Mark Greenwood [aut] (<https://orcid.org/0000-0001-6933-1201>)
Maintainer: Tan Tran <vinhtantran@gmail.com>
Diff between monoClust versions 1.2.0 dated 2020-11-24 and 1.2.1 dated 2021-02-15
monoClust-1.2.0/monoClust/R/MonoClust.R |only monoClust-1.2.0/monoClust/R/MonoClust.object.R |only monoClust-1.2.0/monoClust/R/as_MonoClust.R |only monoClust-1.2.0/monoClust/R/is_MonoClust.R |only monoClust-1.2.0/monoClust/R/plot.MonoClust.R |only monoClust-1.2.0/monoClust/R/plot.cv.MonoClust.R |only monoClust-1.2.0/monoClust/R/predict.MonoClust.R |only monoClust-1.2.0/monoClust/R/print.MonoClust.R |only monoClust-1.2.0/monoClust/R/print.cv.MonoClust.R |only monoClust-1.2.1/monoClust/DESCRIPTION | 9 monoClust-1.2.1/monoClust/MD5 | 70 +-- monoClust-1.2.1/monoClust/NEWS.md | 14 monoClust-1.2.1/monoClust/R/as_monoclust.R |only monoClust-1.2.1/monoClust/R/cv.test.R | 23 - monoClust-1.2.1/monoClust/R/is_monoclust.R |only monoClust-1.2.1/monoClust/R/monoclust.R |only monoClust-1.2.1/monoClust/R/monoclust.object.R |only monoClust-1.2.1/monoClust/R/perm.test.R | 25 - monoClust-1.2.1/monoClust/R/plot.cv.monoclust.R |only monoClust-1.2.1/monoClust/R/plot.monoclust.R |only monoClust-1.2.1/monoClust/R/predict.monoclust.R |only monoClust-1.2.1/monoClust/R/print.cv.monoclust.R |only monoClust-1.2.1/monoClust/R/print.monoclust.R |only monoClust-1.2.1/monoClust/README.md | 4 monoClust-1.2.1/monoClust/build/partial.rdb |binary monoClust-1.2.1/monoClust/inst/doc/monoclust.R | 2 monoClust-1.2.1/monoClust/inst/doc/monoclust.Rmd | 10 monoClust-1.2.1/monoClust/inst/doc/monoclust.html | 394 +++----------------- monoClust-1.2.1/monoClust/man/MonoClust.Rd | 12 monoClust-1.2.1/monoClust/man/MonoClust.object.Rd | 2 monoClust-1.2.1/monoClust/man/as_MonoClust.Rd | 2 monoClust-1.2.1/monoClust/man/checkem.Rd | 2 monoClust-1.2.1/monoClust/man/error_bar.Rd | 56 +- monoClust-1.2.1/monoClust/man/find_split.Rd | 2 monoClust-1.2.1/monoClust/man/is_MonoClust.Rd | 2 monoClust-1.2.1/monoClust/man/make_jump_table.Rd | 2 monoClust-1.2.1/monoClust/man/plot.MonoClust.Rd | 2 monoClust-1.2.1/monoClust/man/plot.cv.MonoClust.Rd | 2 monoClust-1.2.1/monoClust/man/predict.MonoClust.Rd | 2 monoClust-1.2.1/monoClust/man/print.MonoClust.Rd | 2 monoClust-1.2.1/monoClust/man/print.cv.MonoClust.Rd | 2 monoClust-1.2.1/monoClust/man/splitter.Rd | 2 monoClust-1.2.1/monoClust/man/tree_walk.Rd | 42 +- monoClust-1.2.1/monoClust/tests |only monoClust-1.2.1/monoClust/vignettes/monoclust.Rmd | 10 45 files changed, 242 insertions(+), 453 deletions(-)
Title: 'RStudio' Addins and 'Shiny' Modules for Medical Research
Description: 'RStudio' addins and 'Shiny' modules for descriptive statistics, regression and survival analysis.
Author: Jinseob Kim [aut, cre] (<https://orcid.org/0000-0002-9403-605X>),
Zarathu [cph, fnd]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jsmodule versions 1.1.5 dated 2021-01-17 and 1.1.6 dated 2021-02-15
DESCRIPTION | 13 +- MD5 | 27 +++-- NAMESPACE | 3 NEWS.md | 16 +++ R/FilePsInput.R | 2 R/jsBasicGadget.R | 38 +++++++- R/jsPropensityGadget.R | 8 - R/kaplan.R | 16 ++- R/roc.R | 2 R/scatter.R |only R/timeroc.R | 2 build/vignette.rds |binary inst/doc/jsmodule.html | 230 +++---------------------------------------------- man/kaplanModule.Rd | 2 man/scatterServer.Rd |only man/scatterUI.Rd |only 16 files changed, 112 insertions(+), 247 deletions(-)
Title: Easy Access to Model Information for Various Model Objects
Description: A tool to provide an easy, intuitive and consistent
access to information contained in various R models, like model
formulas, model terms, information about random effects, data that was
used to fit the model or data from response variables. 'insight'
mainly revolves around two types of functions: Functions that find
(the names of) information, starting with 'find_', and functions that
get the underlying data, starting with 'get_'. The package has a
consistent syntax and works with many different model objects, where
otherwise functions to access these information are missing.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>,
@strengejacke),
Dominique Makowski [aut, ctb] (<https://orcid.org/0000-0001-5375-9967>,
@Dom_Makowski),
Indrajeet Patil [aut, ctb] (<https://orcid.org/0000-0003-1995-6531>,
@patilindrajeets),
Philip Waggoner [aut, ctb] (<https://orcid.org/0000-0002-7825-7573>),
Mattan S. Ben-Shachar [aut, ctb]
(<https://orcid.org/0000-0002-4287-4801>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between insight versions 0.12.0 dated 2021-01-14 and 0.13.0 dated 2021-02-15
DESCRIPTION | 91 +++-- MD5 | 221 ++++++------ NAMESPACE | 46 ++ NEWS.md | 73 +++- R/backports.R |only R/colour_tools.R | 3 R/compute_variances.R | 24 - R/display.R | 37 ++ R/ellipsis_info.R | 5 R/export_table.R | 69 +++ R/find_formula.R | 34 + R/find_parameters.R | 45 ++ R/find_parameters_bayesian.R | 14 R/find_random_slopes.R | 10 R/find_response.R | 13 R/find_statistic.R | 4 R/find_terms.R | 15 R/format_p.R | 17 R/format_table.R | 56 ++- R/get_auxiliary.R | 2 R/get_data.R | 54 +-- R/get_deviance.R | 21 - R/get_intercept.R | 3 R/get_loglikelihood.R | 11 R/get_parameters.R | 150 +------- R/get_parameters_bayesian.R | 21 - R/get_parameters_censored.R |only R/get_parameters_gam.R | 3 R/get_parameters_htest.R |only R/get_parameters_mixed.R | 15 R/get_parameters_zi.R | 6 R/get_predicted.R | 564 +++++++++++++++++++++++++++++++- R/get_priors.R | 33 + R/get_random.R | 31 - R/get_residuals.R | 12 R/get_response.R | 15 R/get_statistic.R | 77 ++++ R/get_varcov.R | 72 ++-- R/get_weights.R | 12 R/has_intercept.R | 11 R/helper_functions.R | 21 - R/is_model.R | 5 R/is_model_supported.R | 5 R/is_nullmodel.R | 11 R/link_function.R | 36 -- R/link_inverse.R | 30 - R/model_info.R | 71 ++-- R/model_name.R | 3 R/n_obs.R | 21 + R/n_parameters.R | 16 R/print_parameters.R | 6 R/standardize_names.R | 22 + R/utils_get_data.R | 50 +- R/utils_model_info.R | 16 README.md | 158 ++++---- build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 7 inst/doc/display.R |only inst/doc/display.Rmd |only inst/doc/display.html |only man/display.Rd | 17 man/export_table.Rd | 221 ++++++------ man/find_formula.Rd | 8 man/find_random_slopes.Rd | 10 man/find_response.Rd | 13 man/find_terms.Rd | 15 man/format_table.Rd | 4 man/get_auxiliary.Rd | 2 man/get_data.Rd | 10 man/get_deviance.Rd | 5 man/get_intercept.Rd | 3 man/get_parameters.Rd | 1 man/get_parameters.htest.Rd |only man/get_predicted.Rd | 68 +++ man/get_random.Rd | 31 - man/get_response.Rd | 15 man/get_varcov.Rd | 19 - man/get_weights.Rd | 11 man/has_intercept.Rd | 11 man/is_nullmodel.Rd | 11 man/model_info.Rd | 1 man/model_name.Rd | 3 tests/testthat/test-BayesFactorBF.R | 46 +- tests/testthat/test-GLMMadaptive.R | 7 tests/testthat/test-all_models_equal.R | 2 tests/testthat/test-brms.R | 5 tests/testthat/test-clmm.R | 63 ++- tests/testthat/test-cpglmm.R | 33 - tests/testthat/test-crq.R | 24 - tests/testthat/test-ellipses_info.R | 5 tests/testthat/test-export_table.R |only tests/testthat/test-feis.R | 12 tests/testthat/test-felm.R |only tests/testthat/test-find_random.R | 8 tests/testthat/test-find_smooth.R | 10 tests/testthat/test-fixest.R | 19 - tests/testthat/test-format.R | 113 +++++- tests/testthat/test-gam.R | 13 tests/testthat/test-gamm.R | 21 - tests/testthat/test-gamm4.R | 17 tests/testthat/test-get_deviance.R | 14 tests/testthat/test-get_loglikelihood.R | 23 - tests/testthat/test-get_predicted.R |only tests/testthat/test-get_residuals.R | 1 tests/testthat/test-htest.R | 56 ++- tests/testthat/test-lm.R | 16 tests/testthat/test-lmer.R | 7 tests/testthat/test-metaBMA.R | 8 tests/testthat/test-mlogit.R | 87 ++-- tests/testthat/test-multinom.R | 4 tests/testthat/test-panelr.R |only tests/testthat/test-plm.R | 2 tests/testthat/test-rstanarm.R | 7 tests/testthat/test-standardize_names.R | 72 ++-- tests/testthat/test-tidymodels.R |only tests/testthat/test-zeroinfl.R | 5 vignettes/display.Rmd |only 118 files changed, 2435 insertions(+), 1112 deletions(-)
Title: Relational Data Models
Description: Provides tools for working with multiple related
tables, stored as data frames or in a relational database. Multiple
tables (data and metadata) are stored in a compound object, which can
then be manipulated with a pipe-friendly syntax.
Author: Tobias Schieferdecker [aut],
Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>),
Darko Bergant [aut],
Katharina Brunner [ctb],
James Wondrasek [ctb],
energie360° AG [fnd],
cynkra GmbH [fnd, cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between dm versions 0.1.10 dated 2021-01-07 and 0.1.12 dated 2021-02-15
DESCRIPTION | 10 MD5 | 78 ++-- NAMESPACE | 4 NEWS.md | 8 R/db-helpers.R | 92 +++-- R/dm-from-src.R | 12 R/dplyr.R | 53 +++ R/error-helpers.R | 42 ++ R/financial-db-con.R | 2 R/learn.R | 66 ++- R/test-dm.R | 24 + README.md | 2 inst/doc/dm.html | 475 ++++----------------------- inst/doc/howto-dm-copy.html | 559 +++++--------------------------- inst/doc/howto-dm-db.html | 562 +++++---------------------------- inst/doc/howto-dm-df.html | 360 ++++----------------- inst/doc/howto-dm-rows.html | 394 +++++------------------ inst/doc/howto-dm-theory.R | 4 inst/doc/howto-dm-theory.Rmd | 21 - inst/doc/howto-dm-theory.html | 476 ++++++++------------------- inst/doc/tech-dm-cdm.html | 316 +++--------------- inst/doc/tech-dm-class.html | 344 ++++---------------- inst/doc/tech-dm-draw.html | 202 ----------- inst/doc/tech-dm-filter.html | 350 ++++---------------- inst/doc/tech-dm-join.html | 328 +++---------------- inst/doc/tech-dm-low-level.html | 320 +++--------------- inst/doc/tech-dm-naming.html | 196 ----------- inst/doc/tech-dm-zoom.Rmd | 3 inst/doc/tech-dm-zoom.html | 403 ++++++----------------- man/dm_from_src.Rd | 17 man/dplyr_table_manipulation.Rd | 31 + tests/testthat/_snaps/error-helpers.md | 14 tests/testthat/helper-expectations.R | 4 tests/testthat/helper-print.R | 5 tests/testthat/test-db-helpers.R |only tests/testthat/test-dplyr.R | 44 ++ tests/testthat/test-error-helpers.R | 3 tests/testthat/test-learn.R | 221 ++++++++++++ tests/testthat/test-test-dm.R |only vignettes/howto-dm-theory.Rmd | 21 - vignettes/tech-dm-zoom.Rmd | 3 41 files changed, 1713 insertions(+), 4356 deletions(-)
Title: Determine and Evaluate Optimal Cutpoints in Binary
Classification Tasks
Description: Estimate cutpoints that optimize a specified metric in binary classification tasks
and validate performance using bootstrapping. Some methods for more robust cutpoint
estimation are supported, e.g. a parametric method assuming normal distributions,
bootstrapped cutpoints, and smoothing of the metric values per cutpoint using
Generalized Additive Models. Various plotting functions are included. For an overview
of the package see Thiele and Hirschfeld (2020) <arXiv:2002.09209>.
Author: Christian Thiele [cre, aut] (<https://orcid.org/0000-0002-1156-5117>)
Maintainer: Christian Thiele <c.thiele@gmx-topmail.de>
Diff between cutpointr versions 1.0.32 dated 2020-06-19 and 1.1.0 dated 2021-02-15
DESCRIPTION | 17 MD5 | 102 - NAMESPACE | 4 NEWS.md | 26 R/add_metric.R | 197 +- R/boot_ci.R | 166 - R/boot_test.R | 416 ++-- R/cutpointr.R | 1854 +++++++++--------- R/globals.R | 9 R/optimize_metric.R | 1251 ++++++------ R/plot_cutpointr.R | 390 ++- R/plot_metric.R | 260 +- R/plot_metric_boot.R | 155 - R/plot_precision_recall.R | 146 - R/plot_roc.R | 6 R/plot_sensitivity_specificity.R | 163 - R/print.summary_cutpointr.R | 134 - R/print.summary_multi_cutpointr.R | 139 - R/summary.cutpointr.R | 151 - R/summary.multi_cutpointr.R | 158 - R/utils.R | 675 +++--- build/vignette.rds |binary inst/doc/cutpointr.html | 191 + man/add_metric.Rd | 9 man/boot_ci.Rd | 4 man/boot_test.Rd | 4 man/figures/README-unnamed-chunk-11-1.png |binary man/figures/README-unnamed-chunk-15-1.png |binary man/figures/README-unnamed-chunk-17-1.png |binary man/figures/README-unnamed-chunk-18-1.png |binary man/figures/README-unnamed-chunk-19-1.png |binary man/figures/README-unnamed-chunk-22-1.png |binary man/figures/README-unnamed-chunk-24-1.png |binary man/figures/README-unnamed-chunk-26-1.png |binary man/figures/README-unnamed-chunk-36-1.png |binary man/figures/README-unnamed-chunk-36-2.png |binary man/figures/README-unnamed-chunk-36-3.png |binary man/figures/README-unnamed-chunk-36-4.png |binary man/figures/README-unnamed-chunk-36-5.png |binary man/figures/README-unnamed-chunk-36-6.png |binary man/figures/README-unnamed-chunk-37-1.png |binary man/figures/README-unnamed-chunk-38-1.png |binary man/figures/README-unnamed-chunk-38-2.png |binary man/figures/README-unnamed-chunk-38-3.png |binary man/figures/README-unnamed-chunk-39-1.png |binary man/figures/README-unnamed-chunk-46-1.png |binary man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-7-1.png |binary man/maximize_boot_metric.Rd | 6 man/multi_cutpointr.Rd | 9 tests/testthat/Rplots.pdf |binary tests/testthat/test-cutpointr.R | 2939 +++++++++++++++--------------- 52 files changed, 4934 insertions(+), 4647 deletions(-)
Title: TERN AusPlots Analysis Package
Description: Extraction, preparation, visualisation and analysis of TERN AusPlots ecosystem monitoring data. Direct access to plot-based data on vegetation and soils across Australia, including physical sample barcode numbers. Simple function calls extract the data and merge them into species occurrence matrices for downstream analysis, or calculate things like basal area and fractional cover. TERN AusPlots is a national field plot-based ecosystem surveillance monitoring method and dataset for Australia. The data have been collected across a national network of plots and transects by the Terrestrial Ecosystem Research Network (TERN - <https://www.tern.org.au>), an Australian Government NCRIS-enabled project, and its Ecosystem Surveillance platform (<https://www.tern.org.au/tern-observatory/tern-ecosystem-surveillance/>).
Author: Greg Guerin [aut, cre],
Tom Saleeba [aut],
Samantha Munroe [aut],
Bernardo Blanco-Martin [aut],
Irene Martín-Forés [aut],
Andrew Tokmakoff [aut]
Maintainer: Greg Guerin <ggueri01@gmail.com>
Diff between ausplotsR versions 1.2.1 dated 2020-12-17 and 1.2.2 dated 2021-02-15
DESCRIPTION | 10 - MD5 | 18 +-- R/species_optimisation.R | 10 + inst/doc/start_guide.R | 5 inst/doc/start_guide.Rmd | 7 - inst/doc/start_guide.html | 272 ++++++++++++++++++++++------------------------ man/ausplotsR-package.Rd | 4 man/growth_form_table.Rd | 2 man/species_table.Rd | 2 vignettes/start_guide.Rmd | 7 - 10 files changed, 164 insertions(+), 173 deletions(-)
Title: Quickly Explore Your Data Using 'ggplot2' and 'table1' Summary
Tables
Description: Quickly and easily perform exploratory data analysis by uploading your
data as a 'csv' file. Start generating insights using 'ggplot2' plots and
'table1' tables with descriptive stats, all using an easy-to-use point and click
'Shiny' interface.
Author: Samer Mouksassi [aut, cre] (<https://orcid.org/0000-0002-7152-6654>),
Dean Attali [aut],
Benjamin Rich [aut] (provided summary stats tables tab code),
Michael Sachs [aut] (provided ggkm code)
Maintainer: Samer Mouksassi <samermouksassi@gmail.com>
Diff between ggquickeda versions 0.1.9 dated 2020-12-16 and 0.2.0 dated 2021-02-15
DESCRIPTION | 16 MD5 | 45 NAMESPACE | 6 NEWS.md | 17 R/ggkm.R | 6 R/sourceable.R | 3 README.md | 27 inst/doc/AdditionalPlotsStats.html | 256 - inst/doc/Visualizing_Summary_Data.Rmd | 12 inst/doc/Visualizing_Summary_Data.html | 321 - inst/doc/ggquickeda.html | 256 - inst/shinyapp/global.R | 98 inst/shinyapp/rsconnect/rstudio.studyexplorer.io/samer.mouksassi/ggquickeda.dcf | 6 inst/shinyapp/server.R | 2501 +++++----- inst/shinyapp/ui.R | 589 +- man/figures |only vignettes/Visualizing_Summary_Data.Rmd | 12 vignettes/nejmfigure.png |binary vignettes/remdesivirfig3.csv | 20 vignettes/sumdata3.png |binary vignettes/sumdata4.png |binary vignettes/sumdata6.png |binary vignettes/sumdata7.png |binary vignettes/sumdata8.png |binary 24 files changed, 1968 insertions(+), 2223 deletions(-)
Title: Animal Social Network Inference and Permutations for Ecologists
Description: Implements several tools that are used in animal social network analysis, as described in Whitehead (2007) Analyzing Animal Societies <University of Chicago Press> and Farine & Whitehead (2015) <doi: 10.1111/1365-2656.12418>. In particular, this package provides the tools to infer groups and generate networks from observation data, perform permutation tests on the data, calculate lagged association rates, and performed multiple regression analysis on social network data.
Author: Damien R. Farine <dfarine@ab.mpg.de>
Maintainer: Damien R. Farine <dfarine@ab.mpg.de>
Diff between asnipe versions 1.1.13 dated 2020-09-23 and 1.1.15 dated 2021-02-15
DESCRIPTION | 8 ++--- MD5 | 12 ++++---- R/get_associations_points_tw.R | 8 +++-- R/get_sampling_periods.R | 6 ++-- man/asnipe-package.Rd | 4 +- man/get_associations_points_tw.Rd | 12 ++++---- man/network_permutation.Rd | 56 ++++++++++++++++++++++++++++++++++++++ 7 files changed, 84 insertions(+), 22 deletions(-)
Title: A Collection of Robust Statistical Methods
Description: A collection of robust statistical methods based on Wilcox' WRS functions. It implements robust t-tests (independent and dependent samples), robust ANOVA (including between-within subject designs), quantile ANOVA, robust correlation, robust mediation, and nonparametric ANCOVA models based on robust location measures.
Author: Patrick Mair [cre, aut],
Rand Wilcox [aut]
Maintainer: Patrick Mair <mair@fas.harvard.edu>
Diff between WRS2 versions 1.1-0 dated 2020-06-19 and 1.1-1 dated 2021-02-15
DESCRIPTION | 8 ++++---- MD5 | 20 +++++++++++--------- NAMESPACE | 3 ++- R/fac2list.R | 4 ++-- R/mcp2a.R | 9 ++++++--- R/mcp2atm.R | 10 +++++++--- R/wmcpAKP.R |only build/vignette.rds |binary inst/NEWS.Rd | 7 +++++++ inst/doc/WRS2.pdf |binary man/wmcpAKP.Rd |only man/yuen.Rd | 2 +- 12 files changed, 40 insertions(+), 23 deletions(-)
Title: Multidimensional Scaling
Description: Implements the following approaches for multidimensional scaling (MDS) based on stress minimization using majorization (smacof): ratio/interval/ordinal/spline MDS on symmetric dissimilarity matrices, MDS with external constraints on the configuration, individual differences scaling (idioscal, indscal), MDS with spherical restrictions, and ratio/interval/ordinal/spline unfolding (circular restrictions, row-conditional). Various tools and extensions like jackknife MDS, bootstrap MDS, permutation tests, MDS biplots, gravity models, unidimensional scaling, drift vectors (asymmetric MDS), classical scaling, and Procrustes are implemented as well.
Author: Patrick Mair [aut, cre],
Jan De Leeuw [aut],
Patrick J. F. Groenen [aut],
Ingwer Borg [ctb]
Maintainer: Patrick Mair <mair@fas.harvard.edu>
Diff between smacof versions 2.1-1 dated 2020-06-29 and 2.1-2 dated 2021-02-15
smacof-2.1-1/smacof/inst/doc/mdsnutshell.R |only smacof-2.1-1/smacof/inst/doc/mdsnutshell.Rmd |only smacof-2.1-1/smacof/inst/doc/mdsnutshell.html |only smacof-2.1-1/smacof/inst/doc/unfoldingnutshell.R |only smacof-2.1-1/smacof/inst/doc/unfoldingnutshell.Rmd |only smacof-2.1-1/smacof/inst/doc/unfoldingnutshell.html |only smacof-2.1-1/smacof/vignettes/mdsnutshell.Rmd |only smacof-2.1-1/smacof/vignettes/unfoldingnutshell.Rmd |only smacof-2.1-2/smacof/DESCRIPTION | 8 ++-- smacof-2.1-2/smacof/MD5 | 39 ++++++++------------ smacof-2.1-2/smacof/R/smacofConstraint.R | 6 +-- smacof-2.1-2/smacof/build/partial.rdb |only smacof-2.1-2/smacof/build/vignette.rds |binary smacof-2.1-2/smacof/inst/CITATION | 4 +- smacof-2.1-2/smacof/inst/NEWS.Rd | 6 +++ smacof-2.1-2/smacof/inst/doc/smacof.pdf |binary smacof-2.1-2/smacof/man/GOPdtm.Rd | 2 - smacof-2.1-2/smacof/man/confEllipse.smacofID.Rd | 2 - smacof-2.1-2/smacof/man/gravity.Rd | 2 - smacof-2.1-2/smacof/man/icExplore.Rd | 2 - smacof-2.1-2/smacof/man/smacofConstraint.rd | 2 - smacof-2.1-2/smacof/man/smacofIndDiff.Rd | 2 - smacof-2.1-2/smacof/man/smacofRect.Rd | 2 - smacof-2.1-2/smacof/man/smacofSphere.Rd | 2 - smacof-2.1-2/smacof/man/smacofSym.Rd | 2 - 25 files changed, 40 insertions(+), 41 deletions(-)
Title: Gifi Methods for Optimal Scaling
Description: Performs a homogeneity analysis (multiple correspondence analysis) and various extensions. Rank restrictions on the category quantifications can be imposed (nonlinear PCA). The categories are transformed by means of optimal scaling with options for nominal, ordinal, and numerical scale levels (for rank-1 restrictions). Variables can be grouped into sets, in order to emulate regression analysis and canonical correlation analysis.
Author: Patrick Mair [aut, cre],
Jan De Leeuw [aut]
Maintainer: Patrick Mair <mair@fas.harvard.edu>
Diff between homals versions 1.0-8 dated 2018-05-26 and 1.0-9 dated 2021-02-15
homals-1.0-8/homals/R/plot3d.homals.R |only homals-1.0-9/homals/DESCRIPTION | 17 ++++---- homals-1.0-9/homals/MD5 | 13 +++--- homals-1.0-9/homals/NAMESPACE | 3 - homals-1.0-9/homals/inst/CITATION | 4 +- homals-1.0-9/homals/man/galo.Rd | 66 +++++++++++++++------------------ homals-1.0-9/homals/man/homals.Rd | 2 - homals-1.0-9/homals/man/plot.homals.Rd | 8 ---- 8 files changed, 49 insertions(+), 64 deletions(-)
Title: Extended Rasch Modeling
Description: Fits Rasch models (RM), linear logistic test models (LLTM), rating scale model (RSM), linear rating scale models (LRSM), partial credit models (PCM), and linear partial credit models (LPCM). Missing values are allowed in the data matrix. Additional features are the ML estimation of the person parameters, Andersen's LR-test, item-specific Wald test, Martin-Loef-Test, nonparametric Monte-Carlo Tests, itemfit and personfit statistics including infit and outfit measures, ICC and other plots, automated stepwise item elimination, simulation module for various binary data matrices.
Author: Patrick Mair [cre, aut],
Reinhold Hatzinger [aut],
Marco J. Maier [aut],
Thomas Rusch [ctb],
Rudolf Debelak [ctb]
Maintainer: Patrick Mair <mair@fas.harvard.edu>
Diff between eRm versions 1.0-1 dated 2020-03-03 and 1.0-2 dated 2021-02-15
DESCRIPTION | 8 MD5 | 33 - R/SepRel.R | 135 +++--- R/plotINFO.R | 9 R/rserror.R | 64 +- build/partial.rdb |only build/vignette.rds |binary inst/CITATION | 4 inst/NEWS.Rd | 8 inst/doc/eRm.R | 1 inst/doc/eRm.pdf |binary man/LLRA.Rd | 2 man/LRtest.Rd | 2 man/NPtest.Rd | 10 man/SepRel.Rd | 134 +++--- man/plotINFO.Rd | 7 man/plotPWmap.Rd | 200 ++++----- src/RaschSampler.f90 | 1100 +++++++++++++++++++++++++-------------------------- 18 files changed, 867 insertions(+), 850 deletions(-)
Title: Variable Life Adjusted Display and Other Risk-Adjusted Quality
Control Charts
Description: Contains functions to set up risk-adjusted quality control charts in health care. For the variable life adjusted display (VLAD) proposed by Lovegrove et al. (1997) <doi:10.1016/S0140-6736(97)06507-0> signaling rules derived in Wittenberg et al. (2018) <doi:10.1002/sim.7647> are implemented. Additionally, for the risk-adjusted cumulative sum chart based on log-likelihood ratio statistic introduced by Steiner et al. (2000) <doi:10.1093/biostatistics/1.4.441> average run length and control limits can be computed with fast and accurate Markov chain approximations developed in Knoth et al. (2019) <doi:10.1002/sim.8104>.
Author: Philipp Wittenberg [aut, cre] (<https://orcid.org/0000-0001-7151-8243>),
Sven Knoth [aut, ths] (<https://orcid.org/0000-0002-9666-5554>)
Maintainer: Philipp Wittenberg <pwitten@hsu-hh.de>
Diff between vlad versions 0.2.1 dated 2020-08-24 and 0.2.2 dated 2021-02-15
vlad-0.2.1/vlad/R/racusum_beta_int.R |only vlad-0.2.1/vlad/R/racusum_beta_mc.R |only vlad-0.2.1/vlad/R/racusum_beta_sim.R |only vlad-0.2.1/vlad/R/racusum_mc.R |only vlad-0.2.1/vlad/man/racusum_arl_mc.Rd |only vlad-0.2.1/vlad/man/racusum_arl_sim.Rd |only vlad-0.2.1/vlad/man/racusum_beta_arl_int.Rd |only vlad-0.2.1/vlad/man/racusum_beta_arl_mc.Rd |only vlad-0.2.1/vlad/man/racusum_beta_arl_sim.Rd |only vlad-0.2.1/vlad/man/racusum_beta_crit_mc.Rd |only vlad-0.2.1/vlad/man/racusum_beta_crit_sim.Rd |only vlad-0.2.1/vlad/man/racusum_crit_mc.Rd |only vlad-0.2.1/vlad/man/racusum_crit_sim.Rd |only vlad-0.2.2/vlad/DESCRIPTION | 6 vlad-0.2.2/vlad/MD5 | 61 +- vlad-0.2.2/vlad/NAMESPACE | 2 vlad-0.2.2/vlad/NEWS.md | 7 vlad-0.2.2/vlad/R/data.R |only vlad-0.2.2/vlad/R/plot.R |only vlad-0.2.2/vlad/R/racusum_arl.R |only vlad-0.2.2/vlad/R/racusum_beta_arl.R |only vlad-0.2.2/vlad/R/racusum_beta_crit.R |only vlad-0.2.2/vlad/R/racusum_crit.R |only vlad-0.2.2/vlad/R/racusum_sim.R | 106 --- vlad-0.2.2/vlad/data |only vlad-0.2.2/vlad/inst/include/racusum_mc.h | 10 vlad-0.2.2/vlad/inst/include/vlad.h | 3 vlad-0.2.2/vlad/man/VMASK3.Rd |only vlad-0.2.2/vlad/man/bcusum_crit_sim.Rd | 12 vlad-0.2.2/vlad/man/compute_vmask.Rd |only vlad-0.2.2/vlad/man/eocusum_crit_sim.Rd | 15 vlad-0.2.2/vlad/man/racusum_arl.Rd |only vlad-0.2.2/vlad/man/racusum_beta_arl.Rd |only vlad-0.2.2/vlad/man/racusum_beta_crit.Rd |only vlad-0.2.2/vlad/man/racusum_betabinomial_arl_sim.Rd | 12 vlad-0.2.2/vlad/man/racusum_betabinomial_crit_sim.Rd | 16 vlad-0.2.2/vlad/man/racusum_crit.Rd |only vlad-0.2.2/vlad/man/racusum_discretebeta_arl_sim.Rd | 12 vlad-0.2.2/vlad/man/racusum_discretebeta_crit_sim.Rd | 16 vlad-0.2.2/vlad/man/surgery.Rd |only vlad-0.2.2/vlad/src/racusum_mc.cpp | 329 ++++++++---- vlad-0.2.2/vlad/tests/testthat/test-racusum_beta_arl_sim.R | 4 vlad-0.2.2/vlad/tests/testthat/test-racusum_beta_crit_mc.R | 2 vlad-0.2.2/vlad/tests/testthat/test-racusum_beta_crit_sim.R | 6 vlad-0.2.2/vlad/tests/testthat/test-racusum_crit_mc.R | 2 45 files changed, 301 insertions(+), 320 deletions(-)
Title: Fast Algorithms for Robust Slopes
Description: Fast algorithms for the Theil-Sen estimator
and Siegel's repeated median slope estimator. The implementation is based on algorithms by
Dillencourt et. al (1992) <doi:10.1142/S0218195992000020> and Matousek et. al (1998) <doi:10.1007/PL00009190>. Both algorithms run in quasilinear time.
Author: Jakob Raymaekers
Maintainer: Jakob Raymaekers <jakob.raymaekers@kuleuven.be>
Diff between robslopes versions 1.0.1 dated 2021-02-04 and 1.0.2 dated 2021-02-15
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/RcppExports.R | 8 ++++---- R/RepeatedMedian.R | 5 ++++- R/TheilSen.R | 18 ++++++++++-------- src/HelpFunctions.cpp | 4 ++-- src/RcppExports.cpp | 21 +++++++++++---------- src/rcpparma_Theil_Sen.cpp | 35 +++++++++++++++++++++-------------- src/rcpparma_repeated_median.cpp | 28 ++++++++++++++++------------ 9 files changed, 80 insertions(+), 63 deletions(-)
Title: Interactive Self-Organizing Maps
Description: Self-organizing maps (also known as SOM, see Kohonen (2001) <doi:10.1007/978-3-642-56927-2>) are a method for dimensionality reduction and clustering of continuous data. This package introduces interactive (html) graphics for easier analysis of SOM results. It also features an interactive interface, for push-button training and visualization of SOM on numeric, categorical or mixed data, as well as tools to evaluate the quality of SOM.
Author: Julien Boelaert [aut, cre],
Etienne Ollion [aut],
Jan Sodoge [aut],
Mohamed Megdoud [ctb],
Otmane Naji [ctb],
Arnaud Lemba Kote [ctb],
Theo Renoud [ctb],
Samuel Hym [ctb]
Maintainer: Julien Boelaert <julien.boelaert@univ-lille.fr>
Diff between aweSOM versions 1.0 dated 2021-01-22 and 1.1 dated 2021-02-15
DESCRIPTION | 11 MD5 | 36 +- NAMESPACE | 13 NEWS |only R/aweSOM-package.R | 5 R/import.R | 175 ++++----- R/plots.R | 257 +++++++++----- R/train.R | 50 ++ inst/doc/aweSOM.html | 142 ++++---- inst/htmlwidgets/aweSOMwidget.js | 4 inst/shiny/reproducible_code.Rmd | 8 inst/shiny/server.R | 692 +++++++++++++++++++++++++-------------- inst/shiny/ui.R | 541 ++++++++++++++++-------------- inst/shiny/www/favicon.ico |only inst/shiny/www/logo.png |only man/aweSOM-package.Rd | 4 man/aweSOMplot.Rd | 18 - man/aweSOMreorder.Rd |only man/aweSOMsilhouette.Rd | 1 man/aweSOMsmoothdist.Rd | 1 man/cdt.Rd |only man/figures |only 22 files changed, 1151 insertions(+), 807 deletions(-)
Title: Converts Human gene symbols to entrez IDs
Description: Queries multiple resources authors HGNC (2019) <https://www.genenames.org>, authors limma (2015) <doi:10.1093/nar/gkv007>
to find the correspondence between evolving nomenclature of human gene symbols, aliases, previous symbols or synonyms with
stable, curated gene entrezID from NCBI database. This allows fast, accurate and up-to-date correspondence
between human gene expression datasets from various date and platform (e.g: gene symbol: BRCA1 - ID: 672).
Author: Raphael Bonnet [aut, cre] (Université Côte d’Azur),
Lee Mariault [ctb] (Université Côte d’Azur),
Jean-François Peyron [aut] (Inserm)
Maintainer: Raphael Bonnet <raphael.bonnet@univ-cotedazur.fr>
Diff between aliases2entrez versions 0.1.1 dated 2020-05-19 and 0.1.2 dated 2021-02-15
DESCRIPTION | 13 +++++++++---- MD5 | 6 +++--- R/convert_symbols.R | 24 ++++++++++++++++++++---- man/convert_symbols.Rd | 2 +- 4 files changed, 33 insertions(+), 12 deletions(-)
More information about aliases2entrez at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-02-15 0.1.0
Title: Fisher's z-Tests Concerning Difference of Correlations
Description: Computations of Fisher's z-tests concerning differences between correlations. diffcor.one() could be used to test for differences regarding an expected value, e.g., in construct validation. diffcor.two() may be useful in replication studies, to test if the original study and the replication study differed in terms of effects. diffcor.dep() can be applied to check if the correlation between one construct with another one (r12) is significantly different/higher/smaller than the correlation of one of the constructs with a third construct (r13), given the correlation of the constructs that are compared (r23). The outputs for all the three functions provide the test statistic in z-units, 95 percent confidence intervals, and p-values. For diffcor.one() and diffcor.two(), the output further provides the effect size Cohens q as well as confidence intervals for the empirical correlations. According to Cohen (1988), q = |.10|, |.30| and |.50| are considered small, moderate, and large differences, respectively.
Author: Christian Blötner
Maintainer: Christian Blötner <c.bloetner@gmail.com>
Diff between diffcor versions 0.6.3 dated 2021-01-04 and 0.6.4 dated 2021-02-15
DESCRIPTION | 10 ++-- MD5 | 6 +- R/source_code_diffcor.R | 101 ++++++++++++++++++++++-------------------------- man/diffcor.Rd | 77 +++++++++++++++--------------------- 4 files changed, 89 insertions(+), 105 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-08-19 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-12-15 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-01-03 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-09-06 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-02-10 1.1-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-22 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-04-25 2.0
2011-03-24 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-05-19 0.0-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-09-04 2.4
2012-06-12 2.3
2012-01-03 2.2
2011-01-31 2.1
2011-01-19 2.0
2010-10-05 1.1
2010-08-29 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-02-28 0.1
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2014-07-26 1.3
2014-05-29 1.2
2014-01-25 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2008-09-18 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-11-03 0.3-5
2011-08-30 0.3-4
2010-11-07 0.3-3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-03-28 1.1
2011-03-27 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-06-14 0.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-08-04 1.2
2009-08-24 1.1
2009-08-09 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-02-20 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-09-27 0.2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-07-29 1.01
2010-06-23 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-12-12 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-11-04 0.2-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-11-21 1.3.1
2011-01-31 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-06-01 1.3.2
2006-04-24 1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-21 0.4.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-03-06 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-11-15 0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-07-19 1.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-01-20 0.3
2011-12-25 0.2
2011-12-18 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-03-21 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-03-22 1.1.0
2017-06-10 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-12-09 0.1
2010-09-08 0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-05-08 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-08-09 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-06-17 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-07-02 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-08-02 0.1-3
2007-10-09 0.1-2
2006-06-23 0.1-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-02-25 1.0-0.1
2004-12-10 1.0-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2008-06-09 1.0
Title: 'HTMLWidget' Wrapper of 'UpSet.js' for Exploring Large Set
Intersections
Description: 'UpSet.js' is a re-implementation of 'UpSetR' to create interactive set visualizations for more than three sets.
This is a 'htmlwidget' wrapper around the 'JavaScript' library 'UpSet.js'.
Author: Samuel Gratzl [aut, cre]
Maintainer: Samuel Gratzl <sam@sgratzl.com>
Diff between upsetjs versions 1.6.0 dated 2020-07-02 and 1.9.0 dated 2021-02-15
upsetjs-1.6.0/upsetjs/inst/doc/basic.R |only upsetjs-1.6.0/upsetjs/inst/doc/basic.Rmd |only upsetjs-1.6.0/upsetjs/inst/doc/basic.html |only upsetjs-1.6.0/upsetjs/vignettes/basic.Rmd |only upsetjs-1.9.0/upsetjs/DESCRIPTION | 12 upsetjs-1.9.0/upsetjs/LICENSE | 2 upsetjs-1.9.0/upsetjs/MD5 | 77 - upsetjs-1.9.0/upsetjs/NAMESPACE | 7 upsetjs-1.9.0/upsetjs/R/attributes.R | 2 upsetjs-1.9.0/upsetjs/R/data-helpers.R |only upsetjs-1.9.0/upsetjs/R/data.R | 470 +++++----- upsetjs-1.9.0/upsetjs/R/got.R | 2 upsetjs-1.9.0/upsetjs/R/queries.R | 2 upsetjs-1.9.0/upsetjs/R/reexport.R | 22 upsetjs-1.9.0/upsetjs/R/selection.R | 2 upsetjs-1.9.0/upsetjs/R/shiny.R | 2 upsetjs-1.9.0/upsetjs/R/style.R | 2 upsetjs-1.9.0/upsetjs/R/upsetjs-package.R | 2 upsetjs-1.9.0/upsetjs/R/upsetjs.R | 2 upsetjs-1.9.0/upsetjs/R/utils.R | 2 upsetjs-1.9.0/upsetjs/build/vignette.rds |binary upsetjs-1.9.0/upsetjs/inst/doc/colors.html | 137 ++ upsetjs-1.9.0/upsetjs/inst/doc/combinationModes.html | 167 ++- upsetjs-1.9.0/upsetjs/inst/doc/got.Rmd | 92 - upsetjs-1.9.0/upsetjs/inst/doc/got.html | 123 +- upsetjs-1.9.0/upsetjs/inst/doc/kmap.Rmd | 150 +-- upsetjs-1.9.0/upsetjs/inst/doc/kmap.html | 123 +- upsetjs-1.9.0/upsetjs/inst/doc/upsetjs.R |only upsetjs-1.9.0/upsetjs/inst/doc/upsetjs.Rmd |only upsetjs-1.9.0/upsetjs/inst/doc/upsetjs.html |only upsetjs-1.9.0/upsetjs/inst/doc/venn.html | 131 ++ upsetjs-1.9.0/upsetjs/inst/htmlwidgets/upsetjs.js | 3 upsetjs-1.9.0/upsetjs/inst/htmlwidgets/upsetjs.js.LICENSE.txt |only upsetjs-1.9.0/upsetjs/man/asCombination.Rd |only upsetjs-1.9.0/upsetjs/man/asSet.Rd |only upsetjs-1.9.0/upsetjs/man/extractSetsFromDataFrame.Rd |only upsetjs-1.9.0/upsetjs/man/fromDataFrame.Rd | 8 upsetjs-1.9.0/upsetjs/man/fromList.Rd | 5 upsetjs-1.9.0/upsetjs/man/setCombinations.Rd |only upsetjs-1.9.0/upsetjs/man/setElements.Rd |only upsetjs-1.9.0/upsetjs/man/setSets.Rd |only upsetjs-1.9.0/upsetjs/tests |only upsetjs-1.9.0/upsetjs/vignettes/got.Rmd | 92 - upsetjs-1.9.0/upsetjs/vignettes/kmap.Rmd | 150 +-- upsetjs-1.9.0/upsetjs/vignettes/upsetjs.Rmd |only 45 files changed, 1111 insertions(+), 678 deletions(-)
Title: Use IPW to Estimate Treatment Effect under Competing Risks
Description: Uses inverse probability weighting methods to estimate treatment effect under marginal structure model for the cause-specific hazard of competing risk events. Estimates also the cumulative incidence function (i.e. risk) of the potential outcomes, and provides inference on risk difference and risk ratio. Reference: Kalbfleisch & Prentice (2002)<doi:10.1002/9781118032985>; Hernan et al (2001)<doi:10.1198/016214501753168154>.
Author: Yiran Zhang, Ronghui Xu
Maintainer: Yiran Zhang <yiz038@health.ucsd.edu>
Diff between cmprskcoxmsm versions 0.1.0 dated 2021-01-22 and 0.2.0 dated 2021-02-15
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- inst/doc/weight_cause_cox.pdf |binary inst/doc/weight_cause_cox.rnw | 2 +- vignettes/weight_cause_cox.rnw | 2 +- 5 files changed, 10 insertions(+), 10 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-10-19 0.2.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-02-01 0.1
2021-02-01 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-11-10 0.1.1
2017-03-22 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-31 1.3.3.0
2020-01-09 1.2.0.1
2018-02-20 1.2.0.0
2017-03-17 1.1.1.2
2016-05-27 1.1.1.1
2016-02-11 1.1.1.0
2015-11-01 1.1.0.0
2015-06-06 1.0.0.2
2015-02-06 1.0.0.1
2015-01-23 1.0
Title: Excel Connector for R
Description: Provides comprehensive functionality to read, write and format Excel data.
Author: Mirai Solutions GmbH [aut],
Martin Studer [cre],
The Apache Software Foundation [ctb, cph] (Apache POI),
Graph Builder [ctb, cph] (Curvesapi Java library)
Maintainer: Martin Studer <martin.studer@mirai-solutions.com>
Diff between XLConnect versions 1.0.1 dated 2020-03-23 and 1.0.2 dated 2021-02-15
XLConnect-1.0.1/XLConnect/inst/java/XLConnect-1.0.0.jar |only XLConnect-1.0.2/XLConnect/DESCRIPTION | 10 XLConnect-1.0.2/XLConnect/MD5 | 580 +++++----- XLConnect-1.0.2/XLConnect/NEWS | 6 XLConnect-1.0.2/XLConnect/R/XLConnectSettings.R | 4 XLConnect-1.0.2/XLConnect/R/aref.R | 4 XLConnect-1.0.2/XLConnect/R/aref2idx.R | 4 XLConnect-1.0.2/XLConnect/R/cellstyle.R | 4 XLConnect-1.0.2/XLConnect/R/cellstyle.operators.R | 4 XLConnect-1.0.2/XLConnect/R/cellstyle.setBorder.R | 4 XLConnect-1.0.2/XLConnect/R/cellstyle.setDataFormat.R | 4 XLConnect-1.0.2/XLConnect/R/cellstyle.setFillBackgroundColor.R | 4 XLConnect-1.0.2/XLConnect/R/cellstyle.setFillForegroundColor.R | 4 XLConnect-1.0.2/XLConnect/R/cellstyle.setFillPattern.R | 4 XLConnect-1.0.2/XLConnect/R/cellstyle.setWrapText.R | 4 XLConnect-1.0.2/XLConnect/R/checkSystemPackage.R |only XLConnect-1.0.2/XLConnect/R/classToXlcType.R | 4 XLConnect-1.0.2/XLConnect/R/col2idx.R | 4 XLConnect-1.0.2/XLConnect/R/constants.R | 4 XLConnect-1.0.2/XLConnect/R/cref2idx.R | 4 XLConnect-1.0.2/XLConnect/R/dataframeFromJava.R | 4 XLConnect-1.0.2/XLConnect/R/dataframeToJava.R | 4 XLConnect-1.0.2/XLConnect/R/extractRownames.R | 4 XLConnect-1.0.2/XLConnect/R/extractSheetName.R | 4 XLConnect-1.0.2/XLConnect/R/getColSubset.R | 6 XLConnect-1.0.2/XLConnect/R/idx2aref.R | 4 XLConnect-1.0.2/XLConnect/R/idx2col.R | 4 XLConnect-1.0.2/XLConnect/R/idx2cref.R | 4 XLConnect-1.0.2/XLConnect/R/includeRownames.R | 4 XLConnect-1.0.2/XLConnect/R/jTryCatch.R | 4 XLConnect-1.0.2/XLConnect/R/jseq.R | 4 XLConnect-1.0.2/XLConnect/R/jsle.R | 4 XLConnect-1.0.2/XLConnect/R/loadWorkbook.R | 4 XLConnect-1.0.2/XLConnect/R/mirai.R | 4 XLConnect-1.0.2/XLConnect/R/normalizeDataframe.R | 4 XLConnect-1.0.2/XLConnect/R/onAttach.R | 4 XLConnect-1.0.2/XLConnect/R/onLoad.R | 59 - XLConnect-1.0.2/XLConnect/R/readNamedRegionFromFile.R | 4 XLConnect-1.0.2/XLConnect/R/readWorksheetFromFile.R | 4 XLConnect-1.0.2/XLConnect/R/rg2idx.R | 4 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XLConnect-1.0.2/XLConnect/vignettes/XLConnectImpatient.Rnw | 6 XLConnect-1.0.2/XLConnect/vignettes/tikzCodeBlock.sty | 6 293 files changed, 1074 insertions(+), 944 deletions(-)
Title: Random Effects Latent Class Analysis
Description: Fits standard and random effects latent class models. The single level random effects model is described in Qu et al <doi:10.2307/2533043> and the two level random effects model in Beath and Heller <doi:10.1177/1471082X0800900302>. Examples are given for their use in diagnostic testing.
Author: Ken Beath [aut, cre]
Maintainer: Ken Beath <ken.beath@mq.edu.au>
Diff between randomLCA versions 1.1-0 dated 2021-01-07 and 1.1-1 dated 2021-02-15
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/fitAdaptRandom.R | 3 +++ R/fitAdaptRandom2.R | 4 ++++ R/fitFixed.R | 2 +- R/randomLCA.R | 3 ++- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS | 6 ++++++ 9 files changed, 28 insertions(+), 14 deletions(-)
Title: Full Factorial Breeding Analysis
Description: We facilitate the analysis of full factorial mating designs with mixed-effects models. The observed data functions extract the variance explained by random and fixed effects and provide their significance. We then calculate the additive genetic, nonadditive genetic, and maternal variance components explaining the phenotype. In particular, we integrate nonnormal error structures for estimating these components for nonnormal data types. The resampled data functions are used to produce bootstrap confidence intervals, which can then be plotted using a simple function. This package will facilitate the analyses of full factorial mating designs in R, especially for the analysis of binary, proportion, and/or count data types and for the ability to incorporate additional random and fixed effects and power analyses. The paper associated with the package including worked examples is: Houde ALS, Pitcher TE (2016) <doi:10.1002/ece3.1943>.
Author: Aimee Lee Houde [aut, cre], Trevor Pitcher [aut]
Maintainer: Aimee Lee Houde <aimee.lee.houde@gmail.com>
Diff between fullfact versions 1.3 dated 2019-09-02 and 1.4 dated 2021-02-15
DESCRIPTION | 12 +++--- MD5 | 86 +++++++++++++++++++++++----------------------- R/JackGlmer.R | 13 +++--- R/JackGlmer2.R | 13 +++--- R/JackGlmer3.R | 13 +++--- R/JackLmer.R | 13 +++--- R/JackLmer2.R | 13 +++--- R/JackLmer3.R | 13 +++--- R/barMANA.R | 3 + R/boxMANA.R | 3 + R/observGlmer.R | 12 +++--- R/observGlmer2.R | 12 +++--- R/observGlmer3.R | 23 ++++++------ R/observLmer.R | 12 +++--- R/observLmer2.R | 23 ++++++------ R/observLmer3.R | 28 ++++++++------ R/powerGlmer.R | 2 - R/powerGlmer2.R | 16 +++----- R/powerGlmer3.R | 13 +++--- R/powerLmer.R | 2 - R/powerLmer2.R | 18 ++++----- R/powerLmer3.R | 13 +++--- R/resampFamily.R | 4 +- R/resampGlmer.R | 14 +++---- R/resampGlmer2.R | 14 +++---- R/resampGlmer3.R | 14 +++---- R/resampLmer.R | 18 ++++----- R/resampLmer2.R | 14 +++---- R/resampLmer3.R | 14 +++---- R/resampRepli.R | 8 ++-- build/partial.rdb |binary data/chinook_bootL.rda |binary data/chinook_bootS.rda |binary data/chinook_jackL.rda |binary data/chinook_length.rda |binary data/chinook_resampL.rda |binary data/chinook_resampS.rda |binary data/chinook_survival.rda |binary man/powerGlmer.Rd | 5 +- man/powerGlmer2.Rd | 11 ++--- man/powerGlmer3.Rd | 9 +--- man/powerLmer.Rd | 11 ++--- man/powerLmer2.Rd | 14 +++---- man/powerLmer3.Rd | 8 +--- 44 files changed, 262 insertions(+), 252 deletions(-)
Title: 'SAS' Linear Model
Description: This is a core implementation of 'SAS' procedures for linear models - GLM, REG, and ANOVA. Some R packages provide type II and type III SS. However, the results of nested and complex designs are often different from those of 'SAS.' Different results does not necessarily mean incorrectness. However, many wants the same results to SAS. This package aims to achieve that.
Reference: Littell RC, Stroup WW, Freund RJ (2002, ISBN:0-471-22174-0).
Author: Kyun-Seop Bae [aut]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between sasLM versions 0.3.0 dated 2021-01-16 and 0.5.0 dated 2021-02-15
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Title: Prevalence and Regression for Pool-Tested (Group-Tested) Data
Description: An easy-to-use tool for working with presence/absence tests on 'pooled'
or 'grouped' samples. The primary application is for estimating prevalence of
a marker in a population based on the results of tests on pooled specimens.
This sampling method is often employed in surveillance of rare conditions in
humans or animals (e.g. molecular xenomonitoring). The package was initially
conceived as an R-based alternative to the molecular xenomonitoring software,
'PoolScreen' <https://sites.uab.edu/statgenetics/software/>. However, it goes
further, allowing for estimates of prevalence to be adjusted for hierarchical
sampling frames, and perform flexible mixed-effect regression analyses
(McLure et al. pre-print <arXiv:2012.05405>). The package is currently in
early stages, however more features are planned or in the works: e.g.
adjustments for imperfect test specificity/sensitivity, functions for helping
with optimal experimental design, and functions for spatial modelling.
Author: Angus McLure [aut, cre] (<https://orcid.org/0000-0003-2551-3059>)
Maintainer: Angus McLure <angus.mclure@anu.edu.au>
Diff between PoolTestR versions 0.1.0 dated 2021-02-08 and 0.1.1 dated 2021-02-15
DESCRIPTION | 6 ++-- MD5 | 14 +++++------ NEWS.md | 7 ++++- README.md | 10 ++++++-- inst/stan/BayesianPoolScreen.stan | 2 - inst/stan/BayesianPoolScreenJeffreys.stan | 6 ++-- src/stanExports_BayesianPoolScreen.h | 19 ++++++--------- src/stanExports_BayesianPoolScreenJeffreys.h | 33 +++++++++++++-------------- 8 files changed, 52 insertions(+), 45 deletions(-)