Title: Virtual Machines for R
Description: Manage, provision and use Virtual Machines pre-configured for R.
Develop, test and build package in a clean environment.
'Vagrant' tool and a provider (such as 'Virtualbox') have to be installed.
Author: Jean-François Rey [cre, aut]
Maintainer: Jean-François Rey <jf.rey.public@gmail.com>
Diff between vmr versions 0.0.1 dated 2021-02-16 and 0.0.2 dated 2021-02-19
DESCRIPTION | 10 +- MD5 | 28 ++--- NAMESPACE | 3 R/package.R | 31 +++++- R/vagrant.R | 106 +++++++++++---------- R/vagrantcloudAPI.R | 12 +- R/virtualbox.R | 33 +++--- R/vmr-methods.R | 187 +++++++++++++++++++++----------------- R/vmr.R | 9 + README.md | 1 build/vignette.rds |binary man/virtualboxOptions.Rd | 2 man/vmr-package.Rd | 4 tests/testthat/test-virtualbox.R | 22 ++-- tests/testthat/test_vagrantfile.R | 4 15 files changed, 255 insertions(+), 197 deletions(-)
Title: An 'SVG' Graphics Device
Description: A graphics device for R that produces 'Scalable Vector Graphics'.
'svglite' is a fork of the older 'RSvgDevice' package.
Author: Hadley Wickham [aut],
Lionel Henry [aut],
Thomas Lin Pedersen [cre, aut]
(<https://orcid.org/0000-0002-5147-4711>),
T Jake Luciani [aut],
Matthieu Decorde [aut],
Vaudor Lise [aut],
Tony Plate [ctb] (Early line dashing code),
David Gohel [ctb] (Line dashing code and early raster code),
Yixuan Qiu [ctb] (Improved styles; polypath implementation),
Håkon Malmedal [ctb] (Opacity code),
RStudio [cph]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@rstudio.com>
Diff between svglite versions 1.2.3.2 dated 2020-07-07 and 2.0.0 dated 2021-02-19
svglite-1.2.3.2/svglite/R/RcppExports.R |only svglite-1.2.3.2/svglite/src/RcppExports.cpp |only svglite-2.0.0/svglite/DESCRIPTION | 19 svglite-2.0.0/svglite/MD5 | 97 +- svglite-2.0.0/svglite/NAMESPACE | 15 svglite-2.0.0/svglite/NEWS.md | 46 + svglite-2.0.0/svglite/R/SVG.R | 104 +- svglite-2.0.0/svglite/R/aaa.R |only svglite-2.0.0/svglite/R/cpp11.R |only svglite-2.0.0/svglite/R/fonts.R | 100 ++ svglite-2.0.0/svglite/R/inlineSVG.R | 8 svglite-2.0.0/svglite/R/utils.R | 30 svglite-2.0.0/svglite/README.md | 134 ++- svglite-2.0.0/svglite/build/vignette.rds |binary svglite-2.0.0/svglite/inst/doc/fonts.R | 9 svglite-2.0.0/svglite/inst/doc/fonts.Rmd | 30 svglite-2.0.0/svglite/inst/doc/fonts.html | 201 +++- svglite-2.0.0/svglite/inst/doc/scaling.Rmd | 11 svglite-2.0.0/svglite/inst/doc/scaling.html | 86 +- svglite-2.0.0/svglite/man/create_svgz.Rd |only svglite-2.0.0/svglite/man/editSVG.Rd | 1 svglite-2.0.0/svglite/man/figures |only svglite-2.0.0/svglite/man/font_face.Rd |only svglite-2.0.0/svglite/man/htmlSVG.Rd | 5 svglite-2.0.0/svglite/man/reexports.Rd |only svglite-2.0.0/svglite/man/stringSVG.Rd | 1 svglite-2.0.0/svglite/man/svglite.Rd | 84 +- svglite-2.0.0/svglite/man/svgstring.Rd | 55 + svglite-2.0.0/svglite/man/xmlSVG.Rd | 1 svglite-2.0.0/svglite/src/Makevars |only svglite-2.0.0/svglite/src/Makevars.win |only svglite-2.0.0/svglite/src/SvgStream.h | 113 ++ svglite-2.0.0/svglite/src/cpp11.cpp |only svglite-2.0.0/svglite/src/devSVG.cpp | 618 ++++++++++----- svglite-2.0.0/svglite/src/svglite_types.h |only svglite-2.0.0/svglite/src/tinyformat.h |only svglite-2.0.0/svglite/src/utils.h | 20 svglite-2.0.0/svglite/tests/testthat/helper-style.R | 4 svglite-2.0.0/svglite/tests/testthat/test-clip.svg | 29 svglite-2.0.0/svglite/tests/testthat/test-devSVG.R | 54 + svglite-2.0.0/svglite/tests/testthat/test-ids.R |only svglite-2.0.0/svglite/tests/testthat/test-no-clip.svg | 21 svglite-2.0.0/svglite/tests/testthat/test-output.R | 4 svglite-2.0.0/svglite/tests/testthat/test-rect.R | 6 svglite-2.0.0/svglite/tests/testthat/test-scale-text.svg | 13 svglite-2.0.0/svglite/tests/testthat/test-scale.R | 5 svglite-2.0.0/svglite/tests/testthat/test-text-fonts.R | 8 svglite-2.0.0/svglite/tests/testthat/test-text.R | 4 svglite-2.0.0/svglite/tests/testthat/test-text.svg | 19 svglite-2.0.0/svglite/tools |only svglite-2.0.0/svglite/vignettes/fonts.Rmd | 30 svglite-2.0.0/svglite/vignettes/scaling.Rmd | 11 52 files changed, 1428 insertions(+), 568 deletions(-)
Title: Metabolomics and Spectral Data Analysis and Mining
Description: Provides a set of methods for metabolomics
data analysis, including data loading in different formats,
pre-processing, metabolite identification, univariate and multivariate
data analysis, machine learning, feature selection and pathway analysis. Case studies
can be found on the website: <http://bio.di.uminho.pt/metabolomicspackage/index.html>.
This package suggests 'rcytoscapejs', a package not in mainstream repositories. If you need to install it,
use: devtools::install_github('cytoscape/r-cytoscape.js@v0.0.7').
Author: Christopher Costa <chrisbcl@hotmail.com> [aut],
Marcelo Maraschin <mtocsy@gmail.com> [aut],
Miguel Rocha <mrocha@di.uminho.pt> [aut, cre],
Sara Cardoso <saracardoso501@gmail.com> [aut],
Telma Afonso <telma.afonso94@gmail.com> [aut],
Bruno Pereira <pereirinha_bp@hotmail.com> [aut],
C. Beleites [cph],
Jie Hao [cph],
Maintainer: Miguel Rocha <mrocha@di.uminho.pt>
Diff between specmine versions 3.0.3 dated 2020-12-17 and 3.1.3 dated 2021-02-19
DESCRIPTION | 14 - MD5 | 28 +- NAMESPACE | 11 R/NMR_metabolite_identification.R | 3 R/graphics.R | 116 ++++++++++ R/read_NMR_spectra.R | 422 ++++++++++++++++++++++++++++++++++++++ R/structure.R | 198 +++++++++++++++++ R/utils.R | 12 - build |only inst/doc |only inst/read_varian_2dspec_raw.py |only man/check_2d_dataset.Rd |only man/create_2d_dataset.Rd |only man/get_sample_2d_data.Rd |only man/peak_detection2d.Rd |only man/plot_2d_spectra.Rd |only man/read_Bruker_files_2d.Rd |only man/read_varian_2dspectra_raw.Rd |only man/sum_2d_dataset.Rd |only vignettes |only 20 files changed, 788 insertions(+), 16 deletions(-)
Title: Extract, Analyze and Visualize Mutational Signatures for Genomic
Variations
Description: Genomic alterations including single nucleotide
substitution, copy number alteration, etc. are the major force for
cancer initialization and development. Due to the specificity of
molecular lesions caused by genomic alterations, we can generate
characteristic alteration spectra, called 'signature' (Wang, Shixiang,
et al. (2020) <DOI:10.1101/2020.04.27.20082404> & Alexandrov, Ludmil
B., et al. (2020) <DOI:10.1038/s41586-020-1943-3> & Macintyre, Geoff,
et al. (2018) <DOI:10.1038/s41588-018-0179-8>). This package helps
users to extract, analyze and visualize signatures from genomic
alteration records, thus providing new insight into cancer study.
Author: Shixiang Wang [aut, cre] (<https://orcid.org/0000-0001-9855-7357>),
Ziyu Tao [aut] (<https://orcid.org/0000-0003-3272-1227>),
Huimin Li [aut] (<https://orcid.org/0000-0003-1683-9057>),
Tao Wu [aut] (<https://orcid.org/0000-0002-8999-9628>),
Xue-Song Liu [aut, ctb] (<https://orcid.org/0000-0002-7736-0077>),
Geoffrey Macintyre [ctb],
Anand Mayakonda [ctb]
Maintainer: Shixiang Wang <w_shixiang@163.com>
Diff between sigminer versions 1.2.4 dated 2021-01-30 and 1.2.5 dated 2021-02-19
DESCRIPTION | 8 +++---- MD5 | 27 ++++++++++++++------------ NAMESPACE | 2 + NEWS.md | 15 ++++++++++++++ R/best_practice.R | 20 ++++++++++++++----- R/generate_matrices.R | 6 +++-- R/get_sv.R |only R/sig_tally.R | 32 ++++++++++++++++++++++++++++++- README.md | 4 --- build/partial.rdb |binary inst/doc/sigminer.html | 6 ++--- inst/extdata/toy_sv.rds |only man/bp.Rd | 2 - man/figures/README-unnamed-chunk-8-1.png |binary man/read_sv_as_rs.Rd |only man/sig_tally.Rd | 7 +++++- 16 files changed, 97 insertions(+), 32 deletions(-)
Title: Simulating Forest Growth using the 3-PG Model
Description: Provides a flexible and easy-to-use interface for the Physiological Processes Predicting Growth (3-PG) model written in Fortran. The r3PG serves as a flexible and easy-to-use interface for the 3-PGpjs (monospecific, evenaged and evergreen forests) described in Landsberg & Waring (1997) <doi:10.1016/S0378-1127(97)00026-1> and the 3-PGmix (deciduous, uneven-aged or mixed-species forests) described in Forrester & Tang (2016) <doi:10.1016/j.ecolmodel.2015.07.010>.
Author: Volodymyr Trotsiuk [aut, cre] (<https://orcid.org/0000-0002-8363-656X>),
Florian Hartig [aut] (<https://orcid.org/0000-0002-6255-9059>),
David Forrester [aut]
Maintainer: Volodymyr Trotsiuk <volodymyr.trotsiuk@wsl.ch>
Diff between r3PG versions 0.1.2 dated 2020-06-02 and 0.1.3 dated 2021-02-19
DESCRIPTION | 14 MD5 | 46 +-- NEWS | 12 R/run_3PG.R | 7 R/sysdata.rda |binary build/partial.rdb |binary build/vignette.rds |binary data/i_output.rda |binary data/i_parameters.rda |binary data/i_sizeDist.rda |binary inst/doc/r3PG-ReferenceManual.html | 4 man/d_climate.Rd | 6 man/d_parameters.Rd | 6 man/d_site.Rd | 6 man/d_sizeDist.Rd | 6 man/d_species.Rd | 6 man/d_thinning.Rd | 6 man/i_output.Rd | 6 man/i_parameters.Rd | 6 man/i_sizeDist.Rd | 6 src/i_decl_var.h | 29 -- src/i_init_var.h | 144 +++++----- src/i_write_out.h | 4 src/md_3PG.f95 | 520 +++++++++++++++++++------------------ 24 files changed, 444 insertions(+), 390 deletions(-)
Title: Simple Methods for Calculating Value at Risk and Expected
Shortfall
Description: Enables the user to calculate Value at Risk (VaR)
and Expected Shortfall (ES) by means of various types of historical
simulation. Currently plain historical simulation as well as age- and
volatility-weighted historical simulation are implemented in this
package. Volatility weighting is carried out via an exponentially
weighted moving average (EWMA). The methods of the package are
described in Gurrola-Perez, P. and Murphy, D. (2015)
<https://EconPapers.repec.org/RePEc:boe:boeewp:0525>.
Author: Sebastian Letmathe [aut, cre] (Paderborn University, Germany)
Maintainer: Sebastian Letmathe <sebastian.letmathe@uni-paderborn.de>
Diff between quarks versions 1.0.1 dated 2021-02-18 and 1.0.2 dated 2021-02-19
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 4 ++++ R/hs.R | 4 ++-- README.md | 8 ++++---- man/figures/README-unnamed-chunk-2-1.png |binary man/figures/README-unnamed-chunk-3-1.png |binary man/figures/README-unnamed-chunk-4-1.png |binary 8 files changed, 20 insertions(+), 16 deletions(-)
Title: Data for Lai et al. (2021) Appl. Veg. Sci.
Description: The dataset and model used in Lai et al. (2021)
Decoupled responses of native and exotic tree diversities to
distance from old-growth forest and soil phosphorous in
novel secondary forests. Applied Vegetation Science, 24, e12548.
Author: Hao Ran Lai [aut, cre] (<https://orcid.org/0000-0001-6871-0146>),
Kwek Yan Chong [aut] (<https://orcid.org/0000-0003-4754-8957>),
Alex Thiam Koon Yee [aut] (<https://orcid.org/0000-0002-6465-0075>),
Germaine Su Yin Tan [ctb],
Louise Neo [ctb],
Carmen Yingxin Kee [ctb],
Hugh Tiang Wah Tan [ths]
Maintainer: Hao Ran Lai <hrlai.ecology@gmail.com>
Diff between novelforestSG versions 1.2.0 dated 2021-02-17 and 1.2.1 dated 2021-02-19
DESCRIPTION | 6 - MD5 | 22 ++-- NAMESPACE | 8 - NEWS.md | 15 ++- README.md | 224 ++++++++++++++++++++++----------------------- build/partial.rdb |binary data/novelforest_data.rda |binary inst/CITATION | 48 ++++----- man/backtransform.Rd | 70 +++++++------- man/novelforestSG.Rd | 60 ++++++------ tests/testthat.R | 8 - tests/testthat/test-data.R | 6 - 12 files changed, 236 insertions(+), 231 deletions(-)
Title: A Minimum-Dependency 'R' Interface to the 'NHL' API
Description: Retrieves and processes the data exposed by the open 'NHL' API. This includes information on players, teams, games, tournaments, drafts, standings, schedules and other endpoints. A lower-level interface to access the data via URLs directly is also provided.
Author: Jozef Hajnala [aut, cre]
Maintainer: Jozef Hajnala <jozef.hajnala@gmail.com>
Diff between nhlapi versions 0.1.3 dated 2021-02-19 and 0.1.4 dated 2021-02-19
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- inst/doc/low_level_api.html | 4 ++-- tests/testthat/setup.R | 4 ++++ tests/testthat/test.nhl_plot_rink.R | 13 ++++++++----- 5 files changed, 21 insertions(+), 14 deletions(-)
Title: Epilepsy Ontologies' Similarities
Description: Analysis and visualization of similarities between epilepsy ontologies based on text mining results by comparing ranked lists of co-occurring drug terms in the BioASQ corpus. The ranked result lists of neurological drug terms co-occurring with terms from the epilepsy ontologies EpSO, ESSO, EPILONT, EPISEM and FENICS undergo further analysis. The source data to create the ranked lists of drug names is produced using the text mining workflows described in Mueller, Bernd and Hagelstein, Alexandra (2016) <doi:10.4126/FRL01-006408558>, Mueller, Bernd et al. (2017) <doi:10.1007/978-3-319-58694-6_22> and Mueller, Bernd and Rebholz-Schuhmann, Dietrich (2020) <doi:10.1007/978-3-030-43887-6_52>.
Author: Bernd Mueller
Maintainer: Bernd Mueller <bernd.mueller@zbmed.de>
Diff between epos versions 0.1.3 dated 2020-11-04 and 1.0 dated 2021-02-19
epos-0.1.3/epos/tests/testthat/test_genDictListFromRawFreq.R |only epos-1.0/epos/DESCRIPTION | 10 epos-1.0/epos/MD5 | 70 +- epos-1.0/epos/NAMESPACE | 105 +-- epos-1.0/epos/R/calcEnrichment.R | 263 ++++++- epos-1.0/epos/R/doThePlotDrugVectors.R | 40 - epos-1.0/epos/R/drawVennDiagramms.R |only epos-1.0/epos/R/main.R | 38 - epos-1.0/epos/R/processATC.R | 9 epos-1.0/epos/R/writeNeuroTable.R | 333 +++++++++- epos-1.0/epos/README.md | 8 epos-1.0/epos/data/rawDrugNamesCoOcEPILONT.rda |binary epos-1.0/epos/data/rawDrugNamesCoOcEPISEM.rda |binary epos-1.0/epos/data/rawDrugNamesCoOcESSO.rda |binary epos-1.0/epos/data/rawDrugNamesCoOcEpSO.rda |binary epos-1.0/epos/data/rawDrugNamesCoOcFENICS.rda |binary epos-1.0/epos/inst/extdata/DCh-Miner_miner-disease-chemical.tsv.gz |only epos-1.0/epos/inst/extdata/atc-fourthlevel.map | 8 epos-1.0/epos/inst/extdata/db-atc.map | 146 +++- epos-1.0/epos/man/createBaseTable.Rd | 12 epos-1.0/epos/man/createNeuroTable.Rd | 10 epos-1.0/epos/man/createTanimotoBaseline.Rd | 31 epos-1.0/epos/man/drawVenn4.Rd |only epos-1.0/epos/man/drawVenn4Doc.Rd |only epos-1.0/epos/man/drawVenn4DrugDoc.Rd |only epos-1.0/epos/man/drawVenn4Syn.Rd |only epos-1.0/epos/man/drawVenn5.Rd |only epos-1.0/epos/man/drawVenn5Doc.Rd |only epos-1.0/epos/man/drawVenn5DrugDoc.Rd |only epos-1.0/epos/man/drawVenn5Syn.Rd |only epos-1.0/epos/man/drawVennGrid.Rd |only epos-1.0/epos/man/plotDSEA.Rd | 17 epos-1.0/epos/man/plotEnrichment.Rd | 22 epos-1.0/epos/man/printTop10Drugs.Rd |only epos-1.0/epos/man/rawDrugNamesCoOcESSO.Rd | 2 epos-1.0/epos/man/sortTableByRefMatches.Rd |only epos-1.0/epos/tests/testthat/test_createBaseTable.R | 8 epos-1.0/epos/tests/testthat/test_createNeuroTable.R | 25 epos-1.0/epos/tests/testthat/test_createTanimotoBaseline.R | 28 epos-1.0/epos/tests/testthat/test_filterApprovedDrugs.R | 4 epos-1.0/epos/tests/testthat/test_filterNeuroDrugs.R | 4 epos-1.0/epos/tests/testthat/test_readAtcMapIntoHashMapAtcCodesAtcNames.R | 2 epos-1.0/epos/tests/testthat/test_readAtcMapIntoHashMapDrugNamesAtcCodes.R | 2 43 files changed, 898 insertions(+), 299 deletions(-)
Title: Data Table Back-End for 'dplyr'
Description: Provides a data.table backend for 'dplyr'. The goal
of 'dtplyr' is to allow you to write 'dplyr' code that is
automatically translated to the equivalent, but usually much faster,
data.table code.
Author: Hadley Wickham [cre, aut],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between dtplyr versions 1.0.1 dated 2020-01-23 and 1.1.0 dated 2021-02-19
dtplyr-1.0.1/dtplyr/R/eager.R |only dtplyr-1.0.1/dtplyr/man/collect.Rd |only dtplyr-1.0.1/dtplyr/man/single_table.Rd |only dtplyr-1.0.1/dtplyr/tests/testthat/test-step-print.txt |only dtplyr-1.1.0/dtplyr/DESCRIPTION | 38 dtplyr-1.1.0/dtplyr/LICENSE |only dtplyr-1.1.0/dtplyr/MD5 | 116 +- dtplyr-1.1.0/dtplyr/NAMESPACE | 44 dtplyr-1.1.0/dtplyr/NEWS.md | 73 + dtplyr-1.1.0/dtplyr/R/count.R |only dtplyr-1.1.0/dtplyr/R/dtplyr-package.R | 6 dtplyr-1.1.0/dtplyr/R/step-assign.R |only dtplyr-1.1.0/dtplyr/R/step-call-pivot_wider.R |only dtplyr-1.1.0/dtplyr/R/step-call.R | 137 ++ dtplyr-1.1.0/dtplyr/R/step-first.R | 30 dtplyr-1.1.0/dtplyr/R/step-group.R | 71 + dtplyr-1.1.0/dtplyr/R/step-join.R | 77 + dtplyr-1.1.0/dtplyr/R/step-modify.R | 34 dtplyr-1.1.0/dtplyr/R/step-mutate.R | 28 dtplyr-1.1.0/dtplyr/R/step-set.R | 49 dtplyr-1.1.0/dtplyr/R/step-subset-arrange.R |only dtplyr-1.1.0/dtplyr/R/step-subset-do.R |only dtplyr-1.1.0/dtplyr/R/step-subset-filter.R |only dtplyr-1.1.0/dtplyr/R/step-subset-relocate.R |only dtplyr-1.1.0/dtplyr/R/step-subset-select.R |only dtplyr-1.1.0/dtplyr/R/step-subset-slice.R |only dtplyr-1.1.0/dtplyr/R/step-subset-summarise.R |only dtplyr-1.1.0/dtplyr/R/step-subset-transmute.R |only dtplyr-1.1.0/dtplyr/R/step-subset.R | 245 ---- dtplyr-1.1.0/dtplyr/R/step.R | 105 +- dtplyr-1.1.0/dtplyr/R/tidyeval-across.R |only dtplyr-1.1.0/dtplyr/R/tidyeval.R | 170 ++- dtplyr-1.1.0/dtplyr/R/zzz.R | 5 dtplyr-1.1.0/dtplyr/README.md | 18 dtplyr-1.1.0/dtplyr/build/vignette.rds |binary dtplyr-1.1.0/dtplyr/inst/doc/translation.html | 505 +++------- dtplyr-1.1.0/dtplyr/man/arrange.dtplyr_step.Rd |only dtplyr-1.1.0/dtplyr/man/collect.dtplyr_step.Rd |only dtplyr-1.1.0/dtplyr/man/count.dtplyr_step.Rd |only dtplyr-1.1.0/dtplyr/man/distinct.dtplyr_step.Rd |only dtplyr-1.1.0/dtplyr/man/dtplyr-package.Rd | 15 dtplyr-1.1.0/dtplyr/man/figures |only dtplyr-1.1.0/dtplyr/man/filter.dtplyr_step.Rd |only dtplyr-1.1.0/dtplyr/man/group_by.dtplyr_step.Rd |only dtplyr-1.1.0/dtplyr/man/group_modify.dtplyr_step.Rd | 26 dtplyr-1.1.0/dtplyr/man/head.dtplyr_step.Rd |only dtplyr-1.1.0/dtplyr/man/intersect.dtplyr_step.Rd |only dtplyr-1.1.0/dtplyr/man/lazy_dt.Rd | 20 dtplyr-1.1.0/dtplyr/man/left_join.dtplyr_step.Rd |only dtplyr-1.1.0/dtplyr/man/mutate.dtplyr_step.Rd |only dtplyr-1.1.0/dtplyr/man/pivot_wider.dtplyr_step.Rd |only dtplyr-1.1.0/dtplyr/man/relocate.dtplyr_step.Rd |only dtplyr-1.1.0/dtplyr/man/rename.dtplyr_step.Rd |only dtplyr-1.1.0/dtplyr/man/select.dtplyr_step.Rd |only dtplyr-1.1.0/dtplyr/man/slice.dtplyr_step.Rd |only dtplyr-1.1.0/dtplyr/man/summarise.dtplyr_step.Rd |only dtplyr-1.1.0/dtplyr/man/transmute.dtplyr_step.Rd |only dtplyr-1.1.0/dtplyr/tests/testthat/_snaps |only dtplyr-1.1.0/dtplyr/tests/testthat/helpers-library.R | 1 dtplyr-1.1.0/dtplyr/tests/testthat/test-count.R |only dtplyr-1.1.0/dtplyr/tests/testthat/test-step-call-pivot_wider.R |only dtplyr-1.1.0/dtplyr/tests/testthat/test-step-call.R | 37 dtplyr-1.1.0/dtplyr/tests/testthat/test-step-group.R | 11 dtplyr-1.1.0/dtplyr/tests/testthat/test-step-join.R | 10 dtplyr-1.1.0/dtplyr/tests/testthat/test-step-modify.R | 10 dtplyr-1.1.0/dtplyr/tests/testthat/test-step-mutate.R | 11 dtplyr-1.1.0/dtplyr/tests/testthat/test-step-set.R | 7 dtplyr-1.1.0/dtplyr/tests/testthat/test-step-subset-arrange.R |only dtplyr-1.1.0/dtplyr/tests/testthat/test-step-subset-do.R |only dtplyr-1.1.0/dtplyr/tests/testthat/test-step-subset-filter.R |only dtplyr-1.1.0/dtplyr/tests/testthat/test-step-subset-relocate.R |only dtplyr-1.1.0/dtplyr/tests/testthat/test-step-subset-select.R |only dtplyr-1.1.0/dtplyr/tests/testthat/test-step-subset-slice.R |only dtplyr-1.1.0/dtplyr/tests/testthat/test-step-subset-summarise.R |only dtplyr-1.1.0/dtplyr/tests/testthat/test-step-subset-transmute.R |only dtplyr-1.1.0/dtplyr/tests/testthat/test-step-subset.R | 260 ----- dtplyr-1.1.0/dtplyr/tests/testthat/test-step.R | 10 dtplyr-1.1.0/dtplyr/tests/testthat/test-tidyeval-across.R |only dtplyr-1.1.0/dtplyr/tests/testthat/test-tidyeval.R | 63 + 79 files changed, 1209 insertions(+), 1023 deletions(-)
Title: Geocode with the OpenCage API
Description: Geocode with the OpenCage API, either from place name to longitude
and latitude (forward geocoding) or from longitude and latitude to the name
and address of a location (reverse geocoding), see
<https://opencagedata.com/>.
Author: Daniel Possenriede [aut, cre] (<https://orcid.org/0000-0002-6738-9845>),
Jesse Sadler [aut] (<https://orcid.org/0000-0001-6081-9681>),
Maëlle Salmon [aut] (<https://orcid.org/0000-0002-2815-0399>),
Noam Ross [ctb],
Jake Russ [ctb],
Julia Silge [rev] (Julia Silge reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/36.)
Maintainer: Daniel Possenriede <possenriede+r@gmail.com>
Diff between opencage versions 0.2.1 dated 2021-02-14 and 0.2.2 dated 2021-02-19
DESCRIPTION | 6 +++--- MD5 | 26 +++++++++++++------------- NEWS.md | 7 ++++++- build/vignette.rds |binary inst/doc/customise_query.Rmd | 2 +- inst/doc/customise_query.html | 4 ++-- inst/doc/opencage.Rmd | 16 ++++++++-------- inst/doc/opencage.html | 18 +++++++++--------- inst/doc/output_options.Rmd | 10 +++++----- inst/doc/output_options.html | 12 ++++++------ tests/testthat/test-oc_config.R | 27 ++++++--------------------- vignettes/customise_query.Rmd | 2 +- vignettes/opencage.Rmd | 16 ++++++++-------- vignettes/output_options.Rmd | 10 +++++----- 14 files changed, 73 insertions(+), 83 deletions(-)
Title: Time-Varying Effect Models
Description: Fits time-varying effect models (TVEM). These are a kind of application of varying-coefficient models in the context of longitudinal data, allowing the strength of linear, logistic, or Poisson regression relationships to change over time. These models are described further in Tan, Shiyko, Li, Li & Dierker (2012) <doi:10.1037/a0025814>. We thank Kaylee Litson, Patricia Berglund, and Yajnaseni Chakraborti for their valuable help with testing the package and documentation. The development of this package was part of a research project supported by National Institutes of Health grants P50 DA039838 from the National Institute of Drug Abuse and 1R01 CA229542-01 from the National Cancer Institute and the NIH Office of Behavioral and Social Science Research. Content is solely the responsibility of the authors and does not necessarily represent the official views of the funding institutions mentioned above. This software is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
Author: John J. Dziak [aut, cre] (<https://orcid.org/0000-0003-0762-5495>),
Donna L. Coffman [aut] (<https://orcid.org/0000-0001-6305-6579>),
Runze Li [aut] (<https://orcid.org/0000-0002-0154-2202>),
Kaylee Litson [aut] (<https://orcid.org/0000-0003-1296-4811>),
Yajnaseni Chakraborti [aut]
Maintainer: John J. Dziak <dziakj1@gmail.com>
Diff between tvem versions 1.0-0 dated 2020-11-25 and 1.2-0 dated 2021-02-19
DESCRIPTION | 16 MD5 | 24 - R/plot_tvem.R | 8 R/print_tvem.R | 120 +++---- R/select_tvem.R | 6 R/tvem.r | 109 ++++-- build/vignette.rds |binary inst/doc/vignette-tvem.R | 68 ++++ inst/doc/vignette-tvem.Rmd | 117 ++++++- inst/doc/vignette-tvem.html | 727 +++++++++++++++++++++++++------------------- man/select_tvem.Rd | 8 man/tvem.Rd | 33 + vignettes/vignette-tvem.Rmd | 117 ++++++- 13 files changed, 911 insertions(+), 442 deletions(-)
Title: Tidy Structural Equation Modeling
Description: A tidy workflow for generating, estimating, reporting,
and plotting structural equation models using 'lavaan' or 'Mplus'.
Throughout this workflow, elements of syntax, results, and graphs are
represented as 'tidy' data, making them easy to customize.
Author: Caspar J. van Lissa [aut, cre]
(<https://orcid.org/0000-0002-0808-5024>)
Maintainer: Caspar J. van Lissa <c.j.vanlissa@uu.nl>
Diff between tidySEM versions 0.1.3 dated 2020-10-09 and 0.1.6 dated 2021-02-19
tidySEM-0.1.3/tidySEM/tests/test_local.R |only tidySEM-0.1.6/tidySEM/DESCRIPTION | 8 tidySEM-0.1.6/tidySEM/MD5 | 55 tidySEM-0.1.6/tidySEM/NAMESPACE | 4 tidySEM-0.1.6/tidySEM/R/motley_functions.R | 6 tidySEM-0.1.6/tidySEM/R/plot-plot_sem.R | 316 ++- tidySEM-0.1.6/tidySEM/R/results-table_results.R | 188 +- tidySEM-0.1.6/tidySEM/R/syntax-create_scales.R | 4 tidySEM-0.1.6/tidySEM/README.md | 31 tidySEM-0.1.6/tidySEM/build/vignette.rds |binary tidySEM-0.1.6/tidySEM/inst/doc/Generating_syntax.html | 468 ++--- tidySEM-0.1.6/tidySEM/inst/doc/Plotting_graphs.R | 51 tidySEM-0.1.6/tidySEM/inst/doc/Plotting_graphs.Rmd | 129 + tidySEM-0.1.6/tidySEM/inst/doc/Plotting_graphs.html | 644 +++++-- tidySEM-0.1.6/tidySEM/inst/doc/Tabulating_results.Rmd | 2 tidySEM-0.1.6/tidySEM/inst/doc/Tabulating_results.html | 834 +++++----- tidySEM-0.1.6/tidySEM/inst/doc/sem_graph.Rmd | 2 tidySEM-0.1.6/tidySEM/inst/doc/sem_graph.html | 108 - tidySEM-0.1.6/tidySEM/man/get_edges.Rd | 45 tidySEM-0.1.6/tidySEM/man/get_nodes.Rd | 55 tidySEM-0.1.6/tidySEM/man/table_results.Rd | 2 tidySEM-0.1.6/tidySEM/tests/testthat.R | 15 tidySEM-0.1.6/tidySEM/tests/testthat/test-get_edges_columns.R |only tidySEM-0.1.6/tidySEM/tests/testthat/test-get_nodes_label.R |only tidySEM-0.1.6/tidySEM/tests/testthat/test-plot_color_argument.R |only tidySEM-0.1.6/tidySEM/tests/testthat/test-results_digits.R |only tidySEM-0.1.6/tidySEM/tests/testthat/test-results_has_pval.R |only tidySEM-0.1.6/tidySEM/tests/testthat/test-syntax_cfa_mplus_lavaan.R | 40 tidySEM-0.1.6/tidySEM/vignettes/Plotting_graphs.Rmd | 129 + tidySEM-0.1.6/tidySEM/vignettes/Tabulating_results.Rmd | 2 tidySEM-0.1.6/tidySEM/vignettes/pgfig8.svg |only tidySEM-0.1.6/tidySEM/vignettes/sem_graph.Rmd | 2 32 files changed, 2001 insertions(+), 1139 deletions(-)
Title: Calculating Bilateral and Multilateral Price Indexes
Description: Preparing a scanner data set for price dynamics calculations (data selecting, data classification, data matching, data filtering). Computing bilateral and multilateral indexes. For details on these methods see: de Haan and Krsinich (2017) <doi:10.1111/roiw.12304> and Diewert and Fox (2020)
<doi:10.1080/07350015.2020.1816176>.
Author: Jacek Białek [aut, cre] (<https://orcid.org/0000-0002-0952-5327>)
Maintainer: Jacek Białek <jacek.bialek@uni.lodz.pl>
Diff between PriceIndices versions 0.0.2 dated 2021-02-11 and 0.0.3 dated 2021-02-19
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 8 ++++++++ R/functions_new.R | 3 ++- 4 files changed, 16 insertions(+), 7 deletions(-)
Title: Calculating Linkage Disequilibrium (LD) in Human Population
Groups of Interest
Description: Provides access to the 'LDlink' API (<https://ldlink.nci.nih.gov/?tab=apiaccess>)
using the R console. This programmatic access facilitates researchers who are
interested in performing batch queries in 1000 Genomes Project (2015) <doi:10.1038/nature15393>
data using 'LDlink'. 'LDlink' is an interactive and powerful suite of web-based tools for querying
germline variants in human population groups of interest. For more details, please see
Machiela et al. (2015) <doi:10.1093/bioinformatics/btv402>.
Author: Timothy A. Myers [aut, cre],
Stephen J. Chanock [aut],
Mitchell J. Machiela [aut]
Maintainer: Timothy A. Myers <myersta@mail.nih.gov>
Diff between LDlinkR versions 1.1.1 dated 2021-02-01 and 1.1.2 dated 2021-02-19
DESCRIPTION | 6 MD5 | 36 +- NAMESPACE | 1 NEWS.md | 9 R/LDexpress.R | 13 R/LDhap.R | 11 R/LDmatrix.R | 11 R/LDpair.R | 11 R/LDpop.R | 11 R/LDproxy.R | 11 R/LDtrait.R | 12 R/SNPchip.R | 11 R/SNPclip.R | 13 README.md | 4 inst/WORDLIST | 4 inst/doc/LDlinkR.R | 4 inst/doc/LDlinkR.Rmd | 818 +++++++++++++++++++++++++------------------------- inst/doc/LDlinkR.html | 545 +++++++++------------------------ vignettes/LDlinkR.Rmd | 818 +++++++++++++++++++++++++------------------------- 19 files changed, 1120 insertions(+), 1229 deletions(-)
Title: R Interface to Google Charts
Description: R interface to Google's chart tools, allowing users
to create interactive charts based on data frames. Charts
are displayed locally via the R HTTP help server. A modern
browser with an Internet connection is required and for some
charts a Flash player. The data remains local and is not
uploaded to Google.
Author: Markus Gesmann [aut, cre],
Diego de Castillo [aut],
Joe Cheng [ctb],
Ashley Baldry [ctb],
Durey Ingeniería [ctb]
Maintainer: Markus Gesmann <markus.gesmann@googlemail.com>
Diff between googleVis versions 0.6.9 dated 2020-11-05 and 0.6.10 dated 2021-02-19
DESCRIPTION | 15 MD5 | 31 - NEWS | 8 R/gvis.R | 5 README.md | 5 THANKS | 1 build/googleVis.pdf |binary build/vignette.rds |binary demo/Roles.R | 12 inst/doc/googleVis_examples.Rmd | 1 inst/doc/googleVis_examples.html | 794 ++++++++++++++++++++------------------ inst/doc/googleVis_intro.R | 12 inst/doc/googleVis_intro.Rmd | 8 inst/doc/googleVis_intro.html | 805 +++++++++++++++++++++++---------------- vignettes/googleVis_examples.Rmd | 1 vignettes/googleVis_intro.Rmd | 8 vignettes/mystyles.css |only 17 files changed, 986 insertions(+), 720 deletions(-)
Title: Fertilizer Response Curve Analysis by Bootstrapping Residuals
Description: Quantify variability (such as confidence interval) of fertilizer response curves and optimum fertilizer rates using bootstrapping residuals with several popular non-linear and linear models.
Author: Ting Fung (Ralph) Ma [cre, aut],
Hannah Francis [aut],
Matt Ruark [ctb]
Maintainer: Ting Fung (Ralph) Ma <tingfung.ma@wisc.edu>
Diff between FertBoot versions 0.4.0 dated 2020-07-18 and 0.5.0 dated 2021-02-19
DESCRIPTION | 8 ++++---- MD5 | 34 +++++++++++++++++----------------- R/boot.CI.R | 3 ++- R/boot.resid.linear.plateau.R | 19 +++++++++++-------- R/boot.resid.quad..R | 27 +++++++++++++++------------ R/boot.resid.quad.plateau.R | 18 +++++++++++------- R/compare.two.sample.R | 4 +++- R/f.linear.plateau.R | 13 +++++++------ R/f.quad.R | 11 ++++++----- R/f.quad.plateau.R | 11 ++++++----- man/boot.CI.Rd | 2 +- man/boot.resid.linear.plateau.Rd | 16 +++++++++------- man/boot.resid.quad.Rd | 25 +++++++++++++------------ man/boot.resid.quad.plateau.Rd | 14 ++++++++------ man/compare.two.sample.Rd | 2 +- man/f.linear.plateau.Rd | 12 ++++++------ man/f.quad.Rd | 10 +++++----- man/f.quad.plateau.Rd | 10 +++++----- 18 files changed, 130 insertions(+), 109 deletions(-)
Title: Bayesian Latent Variable Analysis
Description: Fit a variety of Bayesian latent variable models, including confirmatory
factor analysis, structural equation models, and latent growth curve models.
Author: Edgar Merkle [aut, cre] (<https://orcid.org/0000-0001-7158-0653>),
Yves Rosseel [aut],
Ben Goodrich [aut],
Mauricio Garnier-Villarreal [ctb]
(<https://orcid.org/0000-0002-2951-6647>, R/blav_compare.R,
R/ctr_bayes_fit.R),
Terrence D. Jorgensen [ctb] (<https://orcid.org/0000-0001-5111-6773>,
R/ctr_bayes_fit.R, R/ctr_ppmc.R),
Huub Hoofs [ctb] (R/ctr_bayes_fit.R),
Rens van de Schoot [ctb] (R/ctr_bayes_fit.R)
Maintainer: Edgar Merkle <merklee@missouri.edu>
Diff between blavaan versions 0.3-14 dated 2021-01-20 and 0.3-15 dated 2021-02-19
DESCRIPTION | 6 +++--- MD5 | 32 +++++++++++++++++--------------- NAMESPACE | 3 +++ NEWS | 7 ++++++- R/blav_cond_utils.R | 2 +- R/blav_object_inspect.R | 6 +++--- R/blav_object_methods.R | 21 ++++++++++++++------- R/blav_predict.R |only R/blav_test.R | 2 +- R/blav_utils.R | 2 +- R/blavaan.R | 26 ++++++++++++++++++-------- R/ctr_bayes_fit.R | 6 +++--- R/jags2r.R | 2 +- R/lvgqs.R | 8 +++++--- R/margloglik.R | 2 +- README.md | 2 +- man/blavaan-class.Rd |only man/blavaan.Rd | 1 - 18 files changed, 78 insertions(+), 50 deletions(-)
Title: GroundWater Spatiotemporal Data Analysis Tool (GWSDAT)
Description: Shiny application for the analysis of groundwater
monitoring data, designed to work with simple time-series data for
solute concentration and ground water elevation, but can also plot
non-aqueous phase liquid (NAPL) thickness if required. Also provides
the import of a site basemap in GIS shapefile format.
Author: Wayne Jones <wayne.w.jones@shell.com>, Ludger Evers
<ludger.evers@glasgow.ac.uk>, Andrej Aderhold
<andrej.aderhold@protonmail.com>
Maintainer: Wayne Jones <wayne.w.jones@shell.com>
Diff between GWSDAT versions 3.0.5 dated 2020-11-11 and 3.0.6 dated 2021-02-19
GWSDAT-3.0.5/GWSDAT/inst/extdata/GWSDAT-v4.00.xlam |only GWSDAT-3.0.6/GWSDAT/DESCRIPTION | 6 GWSDAT-3.0.6/GWSDAT/MD5 | 101 GWSDAT-3.0.6/GWSDAT/NAMESPACE | 88 GWSDAT-3.0.6/GWSDAT/NEWS.md |only GWSDAT-3.0.6/GWSDAT/R/aggregateData.R | 192 GWSDAT-3.0.6/GWSDAT/R/calcGWFlow.R | 162 GWSDAT-3.0.6/GWSDAT/R/calcTrafficLights.R | 428 GWSDAT-3.0.6/GWSDAT/R/createOptions.R | 132 GWSDAT-3.0.6/GWSDAT/R/fitData.R | 158 GWSDAT-3.0.6/GWSDAT/R/fitPSpline.R | 594 - GWSDAT-3.0.6/GWSDAT/R/global.R | 36 GWSDAT-3.0.6/GWSDAT/R/importTables.R | 316 GWSDAT-3.0.6/GWSDAT/R/interpBary.R | 205 GWSDAT-3.0.6/GWSDAT/R/interpConc.R | 332 GWSDAT-3.0.6/GWSDAT/R/jobqueue.R | 384 GWSDAT-3.0.6/GWSDAT/R/launchApp.R | 126 GWSDAT-3.0.6/GWSDAT/R/plotPlumeTimeSeries.R | 759 - GWSDAT-3.0.6/GWSDAT/R/plotSTPredictions.R | 490 - GWSDAT-3.0.6/GWSDAT/R/plotSpatialImage.R | 10 GWSDAT-3.0.6/GWSDAT/R/plotTimeSeries.R | 816 - GWSDAT-3.0.6/GWSDAT/R/plotTrendTable.R | 652 - GWSDAT-3.0.6/GWSDAT/R/plotWellReport.R | 492 - GWSDAT-3.0.6/GWSDAT/R/plumeDiagnostics.R | 538 - GWSDAT-3.0.6/GWSDAT/R/ppt.R | 200 GWSDAT-3.0.6/GWSDAT/R/predictValues.R | 80 GWSDAT-3.0.6/GWSDAT/R/processData.R | 912 - GWSDAT-3.0.6/GWSDAT/R/readData.R | 632 - GWSDAT-3.0.6/GWSDAT/R/selectGamma.R | 232 GWSDAT-3.0.6/GWSDAT/R/server.R | 6694 +++++++------- GWSDAT-3.0.6/GWSDAT/R/shapeFiles.R | 286 GWSDAT-3.0.6/GWSDAT/R/ui.R | 348 GWSDAT-3.0.6/GWSDAT/R/uiAnalyse.R | 82 GWSDAT-3.0.6/GWSDAT/R/uiAnalyseOptions.R | 254 GWSDAT-3.0.6/GWSDAT/R/uiAttr.R | 258 GWSDAT-3.0.6/GWSDAT/R/uiDataManager.R | 794 - GWSDAT-3.0.6/GWSDAT/R/uiLogsJobs.R | 38 GWSDAT-3.0.6/GWSDAT/R/uiPlumeDiagnostics.R | 106 GWSDAT-3.0.6/GWSDAT/R/uiSTPredictions.R | 82 GWSDAT-3.0.6/GWSDAT/R/uiSession.R | 48 GWSDAT-3.0.6/GWSDAT/R/uiSpatialImage.R | 224 GWSDAT-3.0.6/GWSDAT/R/uiTimeSeries.R | 86 GWSDAT-3.0.6/GWSDAT/R/uiTrendTable.R | 132 GWSDAT-3.0.6/GWSDAT/R/uiWellReport.R | 78 GWSDAT-3.0.6/GWSDAT/R/user_db.R | 222 GWSDAT-3.0.6/GWSDAT/R/utilities.R | 358 GWSDAT-3.0.6/GWSDAT/inst/application/jqdb_pspline_fit.R | 162 GWSDAT-3.0.6/GWSDAT/inst/application/simple_pspline_fit.R | 62 GWSDAT-3.0.6/GWSDAT/inst/extdata/GWSDAT-v3.10.xlam |only GWSDAT-3.0.6/GWSDAT/inst/www/google-analytics.js | 16 GWSDAT-3.0.6/GWSDAT/inst/www/jump_to_tsplot.js | 14 GWSDAT-3.0.6/GWSDAT/man/createOptions.Rd | 54 GWSDAT-3.0.6/GWSDAT/man/launchApp.Rd | 58 53 files changed, 9772 insertions(+), 9757 deletions(-)
Title: Convert Statistical Objects into Tidy Tibbles
Description: Summarizes key information about statistical
objects in tidy tibbles. This makes it easy to report results, create
plots and consistently work with large numbers of models at once.
Broom provides three verbs that each provide different types of
information about a model. tidy() summarizes information about model
components such as coefficients of a regression. glance() reports
information about an entire model, such as goodness of fit measures
like AIC and BIC. augment() adds information about individual
observations to a dataset, such as fitted values or influence
measures.
Author: David Robinson [aut],
Alex Hayes [aut, cre] (<https://orcid.org/0000-0002-4985-5160>),
Simon Couch [aut],
Indrajeet Patil [ctb] (<https://orcid.org/0000-0003-1995-6531>),
Derek Chiu [ctb],
Matthieu Gomez [ctb],
Boris Demeshev [ctb],
Dieter Menne [ctb],
Benjamin Nutter [ctb],
Luke Johnston [ctb],
Ben Bolker [ctb],
Francois Briatte [ctb],
Jeffrey Arnold [ctb],
Jonah Gabry [ctb],
Luciano Selzer [ctb],
Gavin Simpson [ctb],
Jens Preussner [ctb],
Jay Hesselberth [ctb],
Hadley Wickham [ctb],
Matthew Lincoln [ctb],
Alessandro Gasparini [ctb],
Lukasz Komsta [ctb],
Frederick Novometsky [ctb],
Wilson Freitas [ctb],
Michelle Evans [ctb],
Jason Cory Brunson [ctb],
Simon Jackson [ctb],
Ben Whalley [ctb],
Karissa Whiting [ctb],
Yves Rosseel [ctb],
Michael Kuehn [ctb],
Jorge Cimentada [ctb],
Erle Holgersen [ctb],
Karl Dunkle Werner [ctb] (<https://orcid.org/0000-0003-0523-7309>),
Ethan Christensen [ctb],
Steven Pav [ctb],
Paul PJ [ctb],
Ben Schneider [ctb],
Patrick Kennedy [ctb],
Lily Medina [ctb],
Brian Fannin [ctb],
Jason Muhlenkamp [ctb],
Matt Lehman [ctb],
Bill Denney [ctb] (<https://orcid.org/0000-0002-5759-428X>),
Nic Crane [ctb],
Andrew Bates [ctb],
Vincent Arel-Bundock [ctb] (<https://orcid.org/0000-0003-2042-7063>),
Hideaki Hayashi [ctb],
Luis Tobalina [ctb],
Annie Wang [ctb],
Wei Yang Tham [ctb],
Clara Wang [ctb],
Abby Smith [ctb] (<https://orcid.org/0000-0002-3207-0375>),
Jasper Cooper [ctb] (<https://orcid.org/0000-0002-8639-3188>),
E Auden Krauska [ctb] (<https://orcid.org/0000-0002-1466-5850>),
Alex Wang [ctb],
Malcolm Barrett [ctb] (<https://orcid.org/0000-0003-0299-5825>),
Charles Gray [ctb] (<https://orcid.org/0000-0002-9978-011X>),
Jared Wilber [ctb],
Vilmantas Gegzna [ctb] (<https://orcid.org/0000-0002-9500-5167>),
Eduard Szoecs [ctb],
Frederik Aust [ctb] (<https://orcid.org/0000-0003-4900-788X>),
Angus Moore [ctb],
Nick Williams [ctb],
Marius Barth [ctb] (<https://orcid.org/0000-0002-3421-6665>),
Bruna Wundervald [ctb] (<https://orcid.org/0000-0001-8163-220X>),
Joyce Cahoon [ctb] (<https://orcid.org/0000-0001-7217-4702>),
Grant McDermott [ctb] (<https://orcid.org/0000-0001-7883-8573>),
Kevin Zarca [ctb],
Shiro Kuriwaki [ctb] (<https://orcid.org/0000-0002-5687-2647>),
Lukas Wallrich [ctb] (<https://orcid.org/0000-0003-2121-5177>),
James Martherus [ctb] (<https://orcid.org/0000-0002-8285-3300>),
Chuliang Xiao [ctb] (<https://orcid.org/0000-0002-8466-9398>),
Joseph Larmarange [ctb],
Max Kuhn [ctb],
Michal Bojanowski [ctb],
Hakon Malmedal [ctb],
Clara Wang [ctb],
Sergio Oller [ctb],
Luke Sonnet [ctb],
Jim Hester [ctb],
Cory Brunson [ctb],
Ben Schneider [ctb],
Bernie Gray [ctb] (<https://orcid.org/0000-0001-9190-6032>),
Mara Averick [ctb],
Aaron Jacobs [ctb],
Andreas Bender [ctb],
Sven Templer [ctb],
Paul-Christian Buerkner [ctb],
Matthew Kay [ctb],
Erwan Le Pennec [ctb],
Johan Junkka [ctb],
Hao Zhu [ctb],
Benjamin Soltoff [ctb],
Zoe Wilkinson Saldana [ctb],
Tyler Littlefield [ctb],
Charles T. Gray [ctb],
Shabbh E. Banks [ctb],
Serina Robinson [ctb],
Roger Bivand [ctb],
Riinu Ots [ctb],
Nicholas Williams [ctb],
Nina Jakobsen [ctb],
Michael Weylandt [ctb],
Lisa Lendway [ctb],
Karl Hailperin [ctb],
Josue Rodriguez [ctb],
Jenny Bryan [ctb],
Chris Jarvis [ctb],
Greg Macfarlane [ctb],
Brian Mannakee [ctb],
Drew Tyre [ctb],
Shreyas Singh [ctb],
Laurens Geffert [ctb],
Hong Ooi [ctb],
Henrik Bengtsson [ctb],
Eduard Szocs [ctb],
David Hugh-Jones [ctb],
Matthieu Stigler [ctb],
Hugo Tavares [ctb] (<https://orcid.org/0000-0001-9373-2726>),
R. Willem Vervoort [ctb],
Brenton M. Wiernik [ctb]
Maintainer: Alex Hayes <alexpghayes@gmail.com>
Diff between broom versions 0.7.4 dated 2021-01-29 and 0.7.5 dated 2021-02-19
DESCRIPTION | 6 MD5 | 28 +- NEWS.md | 6 R/muhaz-tidiers.R | 5 R/nnet-tidiers.R | 16 + build/vignette.rds |binary inst/doc/adding-tidiers.html | 243 ------------------------ inst/doc/available-methods.html | 243 ------------------------ inst/doc/bootstrapping.html | 243 ------------------------ inst/doc/broom.html | 306 +++--------------------------- inst/doc/broom_and_dplyr.html | 400 ++++++++-------------------------------- inst/doc/kmeans.html | 239 ----------------------- man/glance.muhaz.Rd | 5 man/tidy.muhaz.Rd | 5 tests/testthat/test-nnet.R | 9 15 files changed, 188 insertions(+), 1566 deletions(-)
Title: 'ggplot2' Based Plots with Statistical Details
Description: Extension of 'ggplot2', 'ggstatsplot' creates
graphics with details from statistical tests included in the plots
themselves. It provides an easier API to generate information-rich plots
for statistical analysis of continuous (violin plots, scatterplots,
histograms, dot plots, dot-and-whisker plots) or categorical (pie and
bar charts) data. Currently, it supports the most common types of
statistical approaches and tests: parametric, nonparametric, robust, and Bayesian
versions of t-test/ANOVA, correlation analyses, contingency table
analysis, meta-analysis, and regression analyses.
Author: Indrajeet Patil [cre, aut, cph]
(<https://orcid.org/0000-0003-1995-6531>, @patilindrajeets)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between ggstatsplot versions 0.6.8 dated 2021-01-19 and 0.7.0 dated 2021-02-19
ggstatsplot-0.6.8/ggstatsplot/R/combine_plots2.R |only ggstatsplot-0.6.8/ggstatsplot/R/ggstatsplot-package.R |only ggstatsplot-0.6.8/ggstatsplot/R/switch_functions.R |only ggstatsplot-0.6.8/ggstatsplot/man/combine_plots2.Rd |only ggstatsplot-0.6.8/ggstatsplot/man/ggstatsplot-package.Rd |only ggstatsplot-0.7.0/ggstatsplot/DESCRIPTION | 24 ggstatsplot-0.7.0/ggstatsplot/MD5 | 241 +- ggstatsplot-0.7.0/ggstatsplot/NAMESPACE | 12 ggstatsplot-0.7.0/ggstatsplot/NEWS.md | 53 ggstatsplot-0.7.0/ggstatsplot/R/combine_plots.R | 200 -- ggstatsplot-0.7.0/ggstatsplot/R/ggbarstats.R | 67 ggstatsplot-0.7.0/ggstatsplot/R/ggbetweenstats.R | 117 - ggstatsplot-0.7.0/ggstatsplot/R/ggcoefstats.R | 100 - ggstatsplot-0.7.0/ggstatsplot/R/ggcorrmat.R | 80 ggstatsplot-0.7.0/ggstatsplot/R/ggdotplotstats.R | 57 ggstatsplot-0.7.0/ggstatsplot/R/gghistostats.R | 78 ggstatsplot-0.7.0/ggstatsplot/R/ggpiestats.R | 56 ggstatsplot-0.7.0/ggstatsplot/R/ggscatterstats.R | 65 ggstatsplot-0.7.0/ggstatsplot/R/ggwithinstats.R | 70 ggstatsplot-0.7.0/ggstatsplot/R/global_vars.R | 1 ggstatsplot-0.7.0/ggstatsplot/R/grouped_ggbarstats.R | 28 ggstatsplot-0.7.0/ggstatsplot/R/grouped_ggbetweenstats.R | 29 ggstatsplot-0.7.0/ggstatsplot/R/grouped_ggcorrmat.R | 23 ggstatsplot-0.7.0/ggstatsplot/R/grouped_ggdotplotstats.R | 24 ggstatsplot-0.7.0/ggstatsplot/R/grouped_gghistostats.R | 47 ggstatsplot-0.7.0/ggstatsplot/R/grouped_ggpiestats.R | 29 ggstatsplot-0.7.0/ggstatsplot/R/grouped_ggscatterstats.R | 41 ggstatsplot-0.7.0/ggstatsplot/R/grouped_ggwithinstats.R | 22 ggstatsplot-0.7.0/ggstatsplot/R/helpers_ggbetweenstats_graphics.R | 45 ggstatsplot-0.7.0/ggstatsplot/R/helpers_ggcatstats_graphics.R | 38 ggstatsplot-0.7.0/ggstatsplot/R/helpers_gghistostats_graphics.R | 63 ggstatsplot-0.7.0/ggstatsplot/R/helpers_messages.R | 1 ggstatsplot-0.7.0/ggstatsplot/R/helpers_theme_ggstatsplot.R | 10 ggstatsplot-0.7.0/ggstatsplot/R/reexports.R | 4 ggstatsplot-0.7.0/ggstatsplot/README.md | 435 ++-- ggstatsplot-0.7.0/ggstatsplot/build/ggstatsplot.pdf |binary ggstatsplot-0.7.0/ggstatsplot/inst/WORDLIST | 20 ggstatsplot-0.7.0/ggstatsplot/inst/doc/additional.html | 4 ggstatsplot-0.7.0/ggstatsplot/man/centrality_ggrepel.Rd | 191 +- ggstatsplot-0.7.0/ggstatsplot/man/combine_plots.Rd | 274 --- ggstatsplot-0.7.0/ggstatsplot/man/figures/README-ggbarstats1-1.png |binary ggstatsplot-0.7.0/ggstatsplot/man/figures/README-ggbarstats2-1.png |binary ggstatsplot-0.7.0/ggstatsplot/man/figures/README-ggbetweenstats1-1.png |binary ggstatsplot-0.7.0/ggstatsplot/man/figures/README-ggbetweenstats2-1.png |binary ggstatsplot-0.7.0/ggstatsplot/man/figures/README-ggbetweenstats3-1.png |binary ggstatsplot-0.7.0/ggstatsplot/man/figures/README-ggcoefstats2-1.png |binary ggstatsplot-0.7.0/ggstatsplot/man/figures/README-ggcorrmat2-1.png |binary ggstatsplot-0.7.0/ggstatsplot/man/figures/README-ggdotplotstats1-1.png |binary ggstatsplot-0.7.0/ggstatsplot/man/figures/README-ggdotplotstats2-1.png |binary ggstatsplot-0.7.0/ggstatsplot/man/figures/README-gghistostats1-1.png |binary ggstatsplot-0.7.0/ggstatsplot/man/figures/README-gghistostats2-1.png |binary ggstatsplot-0.7.0/ggstatsplot/man/figures/README-ggpiestats1-1.png |binary ggstatsplot-0.7.0/ggstatsplot/man/figures/README-ggpiestats3-1.png |binary ggstatsplot-0.7.0/ggstatsplot/man/figures/README-ggscatterstats1-1.png |binary ggstatsplot-0.7.0/ggstatsplot/man/figures/README-ggscatterstats2-1.png |binary ggstatsplot-0.7.0/ggstatsplot/man/figures/README-ggscatterstats3-1.png |binary ggstatsplot-0.7.0/ggstatsplot/man/figures/README-ggwithinstats1-1.png |binary ggstatsplot-0.7.0/ggstatsplot/man/figures/README-ggwithinstats2-1.png |binary ggstatsplot-0.7.0/ggstatsplot/man/ggbarstats.Rd | 33 ggstatsplot-0.7.0/ggstatsplot/man/ggbetweenstats.Rd | 97 - ggstatsplot-0.7.0/ggstatsplot/man/ggcoefstats.Rd | 6 ggstatsplot-0.7.0/ggstatsplot/man/ggcorrmat.Rd | 32 ggstatsplot-0.7.0/ggstatsplot/man/ggdotplotstats.Rd | 86 ggstatsplot-0.7.0/ggstatsplot/man/gghistostats.Rd | 102 - ggstatsplot-0.7.0/ggstatsplot/man/ggpiestats.Rd | 33 ggstatsplot-0.7.0/ggstatsplot/man/ggscatterstats.Rd | 64 ggstatsplot-0.7.0/ggstatsplot/man/ggsignif_adder.Rd | 19 ggstatsplot-0.7.0/ggstatsplot/man/ggwithinstats.Rd | 113 - ggstatsplot-0.7.0/ggstatsplot/man/grouped_ggbarstats.Rd | 63 ggstatsplot-0.7.0/ggstatsplot/man/grouped_ggbetweenstats.Rd | 125 - ggstatsplot-0.7.0/ggstatsplot/man/grouped_ggcorrmat.Rd | 72 ggstatsplot-0.7.0/ggstatsplot/man/grouped_ggdotplotstats.Rd | 113 - ggstatsplot-0.7.0/ggstatsplot/man/grouped_gghistostats.Rd | 112 - ggstatsplot-0.7.0/ggstatsplot/man/grouped_ggpiestats.Rd | 62 ggstatsplot-0.7.0/ggstatsplot/man/grouped_ggscatterstats.Rd | 92 - ggstatsplot-0.7.0/ggstatsplot/man/grouped_ggwithinstats.Rd | 121 - ggstatsplot-0.7.0/ggstatsplot/man/histo_labeller.Rd | 141 - ggstatsplot-0.7.0/ggstatsplot/man/reexports.Rd | 3 ggstatsplot-0.7.0/ggstatsplot/man/theme_ggstatsplot.Rd | 7 ggstatsplot-0.7.0/ggstatsplot/tests/README.md | 6 ggstatsplot-0.7.0/ggstatsplot/tests/figs |only ggstatsplot-0.7.0/ggstatsplot/tests/testthat/Rplots.pdf |binary ggstatsplot-0.7.0/ggstatsplot/tests/testthat/_snaps |only ggstatsplot-0.7.0/ggstatsplot/tests/testthat/test-combine_plots.R | 149 - ggstatsplot-0.7.0/ggstatsplot/tests/testthat/test-ggbarstats.R | 437 ---- ggstatsplot-0.7.0/ggstatsplot/tests/testthat/test-ggbetweenstats.R | 387 ---- ggstatsplot-0.7.0/ggstatsplot/tests/testthat/test-ggcoefstats.R | 659 +------ ggstatsplot-0.7.0/ggstatsplot/tests/testthat/test-ggcoefstats_dataframes.R |only ggstatsplot-0.7.0/ggstatsplot/tests/testthat/test-ggcorrmat.R | 896 ---------- ggstatsplot-0.7.0/ggstatsplot/tests/testthat/test-ggdotplotstats.R | 94 - ggstatsplot-0.7.0/ggstatsplot/tests/testthat/test-gghistostats.R | 332 --- ggstatsplot-0.7.0/ggstatsplot/tests/testthat/test-ggpiestats.R | 262 -- ggstatsplot-0.7.0/ggstatsplot/tests/testthat/test-ggscatterstats.R | 177 - ggstatsplot-0.7.0/ggstatsplot/tests/testthat/test-ggwithinstats.R | 235 -- ggstatsplot-0.7.0/ggstatsplot/tests/testthat/test-grouped_ggcorrmat.R | 3 ggstatsplot-0.7.0/ggstatsplot/tests/testthat/test-grouped_ggdotplotstats.R | 3 ggstatsplot-0.7.0/ggstatsplot/tests/testthat/test-grouped_ggscatterstats.R | 4 ggstatsplot-0.7.0/ggstatsplot/tests/testthat/test-pairwise_ggsignif.R | 94 - ggstatsplot-0.7.0/ggstatsplot/tests/testthat/test-vdiffr_figs.R |only ggstatsplot-0.7.0/ggstatsplot/vignettes/web_only/benchmarking.Rmd |only ggstatsplot-0.7.0/ggstatsplot/vignettes/web_only/combine_plots.Rmd | 81 ggstatsplot-0.7.0/ggstatsplot/vignettes/web_only/faq.Rmd | 26 ggstatsplot-0.7.0/ggstatsplot/vignettes/web_only/ggbetweenstats.Rmd | 16 ggstatsplot-0.7.0/ggstatsplot/vignettes/web_only/ggcoefstats.Rmd | 889 +++++---- ggstatsplot-0.7.0/ggstatsplot/vignettes/web_only/ggcorrmat.Rmd | 22 ggstatsplot-0.7.0/ggstatsplot/vignettes/web_only/ggdotplotstats.Rmd | 7 ggstatsplot-0.7.0/ggstatsplot/vignettes/web_only/gghistostats.Rmd | 55 ggstatsplot-0.7.0/ggstatsplot/vignettes/web_only/ggpiestats.Rmd | 2 ggstatsplot-0.7.0/ggstatsplot/vignettes/web_only/ggscatterstats.Rmd | 18 ggstatsplot-0.7.0/ggstatsplot/vignettes/web_only/ggwithinstats.Rmd | 20 ggstatsplot-0.7.0/ggstatsplot/vignettes/web_only/other_resources.Rmd | 10 ggstatsplot-0.7.0/ggstatsplot/vignettes/web_only/purrr_examples.Rmd | 65 ggstatsplot-0.7.0/ggstatsplot/vignettes/web_only/theme_ggstatsplot.Rmd | 31 113 files changed, 2956 insertions(+), 6069 deletions(-)
Title: Graphics in the Context of Analyzing High-Throughput Data
Description: Additional options for making graphics in the context of analyzing high-throughput data are available here.
This includes automatic segmenting of the current device (eg window) to accommodate multiple new plots,
automatic checking for optimal location of legends in plots, small histograms to insert as legends,
histograms re-transforming axis labels to linear when plotting log2-transformed data,
a violin-plot <doi:10.1080/00031305.1998.10480559> function for a wide variety of input-formats,
principal components analysis (PCA) <doi:10.1080/14786440109462720> with bag-plots <doi:10.1080/00031305.1999.10474494> to highlight and compare the center areas for groups of samples,
generic MA-plots (differential- versus average-value plots) <doi:10.1093/nar/30.4.e15>,
staggered count plots and generation of mouse-over interactive html pages.
Author: Wolfgang Raffelsberger [aut, cre]
Maintainer: Wolfgang Raffelsberger <w.raffelsberger@gmail.com>
Diff between wrGraph versions 1.2.0 dated 2021-01-25 and 1.2.1 dated 2021-02-19
DESCRIPTION | 6 +- MD5 | 14 ++--- R/VolcanoPlotW.R | 105 +++++++++++++++++++++-------------------- R/imageW.R | 6 +- inst/doc/wrGraphVignette1.Rmd | 1 inst/doc/wrGraphVignette1.html | 28 +++++----- man/imageW.Rd | 6 ++ vignettes/wrGraphVignette1.Rmd | 1 8 files changed, 91 insertions(+), 76 deletions(-)
Title: Access 'iNaturalist' Data Through APIs
Description: A programmatic interface to the API provided by the 'iNaturalist' website <https://www.inaturalist.org/> to download species occurrence data submitted by citizen scientists.
Author: Vijay Barve [aut] (<https://orcid.org/0000-0002-4852-2567>),
Edmund Hart [aut],
Stéphane Guillou [cre] (<https://orcid.org/0000-0001-8992-0951>)
Maintainer: Stéphane Guillou <stephane.guillou@member.fsf.org>
Diff between rinat versions 0.1.6 dated 2020-10-14 and 0.1.7 dated 2021-02-19
DESCRIPTION | 8 MD5 | 10 NEWS.md | 4 R/get_inat_obs_project.R | 3 build/vignette.rds |binary inst/doc/rinat-intro.html | 645 +++++++++++++--------------------------------- 6 files changed, 209 insertions(+), 461 deletions(-)
Title: Expressions and Dataframes with Statistical Details
Description: Statistical processing backend for 'ggstatsplot',
this package creates expressions with details from statistical tests.
It can additionally return dataframes with these results, which also
make these functions a more pipe-friendly way to do statistical
analysis. Currently, it supports only the most common types of
statistical approaches and tests: parametric, nonparametric, robust, and Bayesian
versions of t-test/ANOVA, correlation analyses, contingency table
analysis, and meta-analysis.
Author: Indrajeet Patil [cre, aut, cph]
(<https://orcid.org/0000-0003-1995-6531>, @patilindrajeets)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between statsExpressions versions 0.7.0 dated 2021-01-19 and 0.7.1 dated 2021-02-19
statsExpressions-0.7.0/statsExpressions/R/helpers_bf_tests.R |only statsExpressions-0.7.0/statsExpressions/man/bf_expr_template.Rd |only statsExpressions-0.7.0/statsExpressions/man/tidy_model_performance.Rd |only statsExpressions-0.7.0/statsExpressions/tests/testthat/test-expr_templates.R |only statsExpressions-0.7.1/statsExpressions/DESCRIPTION | 19 statsExpressions-0.7.1/statsExpressions/MD5 | 108 +- statsExpressions-0.7.1/statsExpressions/NAMESPACE | 14 statsExpressions-0.7.1/statsExpressions/NEWS.md | 44 - statsExpressions-0.7.1/statsExpressions/R/bf_extractor.R |only statsExpressions-0.7.1/statsExpressions/R/contingency_tabs.R | 50 - statsExpressions-0.7.1/statsExpressions/R/corr_test.R | 108 +- statsExpressions-0.7.1/statsExpressions/R/global_vars.R | 7 statsExpressions-0.7.1/statsExpressions/R/helpers_easystats.R | 29 statsExpressions-0.7.1/statsExpressions/R/helpers_expr_templates.R | 387 ++++----- statsExpressions-0.7.1/statsExpressions/R/meta_random.R | 249 ++---- statsExpressions-0.7.1/statsExpressions/R/oneway_anova.R | 129 +-- statsExpressions-0.7.1/statsExpressions/R/reexports.R | 4 statsExpressions-0.7.1/statsExpressions/R/t_onesample.R | 46 - statsExpressions-0.7.1/statsExpressions/R/t_twosample.R | 71 - statsExpressions-0.7.1/statsExpressions/README.md | 21 statsExpressions-0.7.1/statsExpressions/build/statsExpressions.pdf |only statsExpressions-0.7.1/statsExpressions/inst/WORDLIST | 5 statsExpressions-0.7.1/statsExpressions/inst/doc/stats_details.html | 4 statsExpressions-0.7.1/statsExpressions/man/bf_extractor.Rd | 12 statsExpressions-0.7.1/statsExpressions/man/expr_contingency_tab.Rd | 44 - statsExpressions-0.7.1/statsExpressions/man/expr_corr_test.Rd | 40 statsExpressions-0.7.1/statsExpressions/man/expr_meta_random.Rd | 124 +-- statsExpressions-0.7.1/statsExpressions/man/expr_oneway_anova.Rd | 49 - statsExpressions-0.7.1/statsExpressions/man/expr_t_onesample.Rd | 49 - statsExpressions-0.7.1/statsExpressions/man/expr_t_twosample.Rd | 48 - statsExpressions-0.7.1/statsExpressions/man/expr_template.Rd | 85 +- statsExpressions-0.7.1/statsExpressions/man/figures/README-anova_rob1-1.png |binary statsExpressions-0.7.1/statsExpressions/man/figures/README-ggbetweenstats1-1.png |binary statsExpressions-0.7.1/statsExpressions/man/figures/README-t_two-1.png |binary statsExpressions-0.7.1/statsExpressions/man/figures/README-t_two_ggpubr-1.png |binary statsExpressions-0.7.1/statsExpressions/man/reexports.Rd | 3 statsExpressions-0.7.1/statsExpressions/man/tidy_model_parameters.Rd | 5 statsExpressions-0.7.1/statsExpressions/tests/testthat/test-bf_extractor.R | 87 +- statsExpressions-0.7.1/statsExpressions/tests/testthat/test-expr_contingency_tab.R | 24 statsExpressions-0.7.1/statsExpressions/tests/testthat/test-expr_contingency_tab_bayes.R | 310 +++---- statsExpressions-0.7.1/statsExpressions/tests/testthat/test-expr_corr_test.R | 31 statsExpressions-0.7.1/statsExpressions/tests/testthat/test-expr_corr_test_bayes.R | 174 ++-- statsExpressions-0.7.1/statsExpressions/tests/testthat/test-expr_meta_random_bayes.R | 141 +-- statsExpressions-0.7.1/statsExpressions/tests/testthat/test-expr_meta_random_parametric.R | 179 +--- statsExpressions-0.7.1/statsExpressions/tests/testthat/test-expr_meta_random_robust.R | 130 +-- statsExpressions-0.7.1/statsExpressions/tests/testthat/test-expr_oneway_anova_bayes.R | 406 ++++------ statsExpressions-0.7.1/statsExpressions/tests/testthat/test-expr_oneway_anova_nonparametric.R | 6 statsExpressions-0.7.1/statsExpressions/tests/testthat/test-expr_oneway_anova_parametric.R | 12 statsExpressions-0.7.1/statsExpressions/tests/testthat/test-expr_oneway_anova_robust.R | 18 statsExpressions-0.7.1/statsExpressions/tests/testthat/test-expr_t_onesample.R | 160 +-- statsExpressions-0.7.1/statsExpressions/tests/testthat/test-expr_t_twosample_bayes.R | 331 ++++---- statsExpressions-0.7.1/statsExpressions/tests/testthat/test-expr_t_twosample_nonparametric.R | 6 statsExpressions-0.7.1/statsExpressions/tests/testthat/test-expr_t_twosample_parametric.R | 14 statsExpressions-0.7.1/statsExpressions/tests/testthat/test-expr_t_twosample_robust.R | 54 - statsExpressions-0.7.1/statsExpressions/tests/testthat/test-loop_execution.R | 6 statsExpressions-0.7.1/statsExpressions/tests/testthat/test-loop_execution_bayes.R | 7 statsExpressions-0.7.1/statsExpressions/tests/testthat/test-t-dataframes.R | 6 statsExpressions-0.7.1/statsExpressions/vignettes/web_only/dataframe_outputs.Rmd | 41 - 58 files changed, 1941 insertions(+), 1956 deletions(-)
More information about statsExpressions at CRAN
Permanent link
Title: 'caret' Applications for Spatial-Temporal Models
Description: Supporting functionality to run 'caret' with spatial or spatial-temporal data. 'caret' is a frequently used package for model training and prediction using machine learning. This package includes functions to improve spatial-temporal modelling tasks using 'caret'. It prepares data for Leave-Location-Out and Leave-Time-Out cross-validation which are target-oriented validation strategies for spatial-temporal models. To decrease overfitting and improve model performances, the package implements a forward feature selection that selects suitable predictor variables in view to their contribution to the target-oriented performance. CAST further includes functionality to estimate the (spatial) area of applicability of prediction models by analysing the similarity between new data and training data.
Author: Hanna Meyer [cre, aut],
Chris Reudenbach [ctb],
Marvin Ludwig [ctb],
Thomas Nauss [ctb],
Edzer Pebesma [ctb]
Maintainer: Hanna Meyer <hanna.meyer@uni-muenster.de>
Diff between CAST versions 0.4.2 dated 2020-07-17 and 0.5.0 dated 2021-02-19
CAST-0.4.2/CAST/LICENSE |only CAST-0.4.2/CAST/vignettes/AOA-tutorial.md |only CAST-0.5.0/CAST/DESCRIPTION | 17 - CAST-0.5.0/CAST/MD5 | 41 ++-- CAST-0.5.0/CAST/NAMESPACE | 1 CAST-0.5.0/CAST/NEWS.md | 9 CAST-0.5.0/CAST/R/aoa.R | 210 ++++++++++++++-------- CAST-0.5.0/CAST/R/calibrate_aoa.R |only CAST-0.5.0/CAST/R/ffs.R | 8 CAST-0.5.0/CAST/README.md | 12 - CAST-0.5.0/CAST/build/partial.rdb |only CAST-0.5.0/CAST/build/vignette.rds |binary CAST-0.5.0/CAST/inst/doc/AOA-tutorial.R | 6 CAST-0.5.0/CAST/inst/doc/AOA-tutorial.Rmd | 29 ++- CAST-0.5.0/CAST/inst/doc/AOA-tutorial.html | 122 +++++++++---- CAST-0.5.0/CAST/inst/doc/CAST-intro.R | 2 CAST-0.5.0/CAST/inst/doc/CAST-intro.Rmd | 16 - CAST-0.5.0/CAST/inst/doc/CAST-intro.html | 261 ++++++++++++++-------------- CAST-0.5.0/CAST/inst/extdata/Cookfarm.RData |binary CAST-0.5.0/CAST/man/aoa.Rd | 48 +++-- CAST-0.5.0/CAST/man/calibrate_aoa.Rd |only CAST-0.5.0/CAST/man/ffs.Rd | 8 CAST-0.5.0/CAST/vignettes/AOA-tutorial.Rmd | 29 ++- CAST-0.5.0/CAST/vignettes/CAST-intro.Rmd | 16 - 24 files changed, 511 insertions(+), 324 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-12-17 0.3.6
2020-02-18 0.3.3
2019-11-18 0.3.0
2019-08-08 0.2.2
2019-06-28 0.2.1
2019-02-25 0.2.0
2018-12-06 0.1.2
2018-10-14 0.1.1
Title: Decision Analysis Modelling Package with Parameters Estimation
Ability from Individual Patient Level Data
Description: A collection of functions to construct Markov model for model-based cost-effectiveness analysis.
This includes creating Markov model (both time homogenous and time dependent models), decision analysis,
sensitivity analysis (deterministic and probabilistic). The package allows estimation of parameters for
the Markov model from a given individual patient level data, provided the data file follows some standard
data entry rules.
Author: Sheeja Manchira Krishnan [aut, cre]
Maintainer: Sheeja Manchira Krishnan <sheejamk@gmail.com>
Diff between packDAMipd versions 0.1.2 dated 2020-11-20 and 0.2.0 dated 2021-02-19
packDAMipd-0.1.2/packDAMipd/R/3c_cost_analysis_functions.R |only packDAMipd-0.1.2/packDAMipd/inst/extdata/LifeTable_UK_Briggs_test.csv |only packDAMipd-0.1.2/packDAMipd/inst/extdata/LifeTable_USA_Mx_2015_agerange-nocol.csv |only packDAMipd-0.1.2/packDAMipd/inst/extdata/LifeTable_USA_Mx_2015_missing.csv |only packDAMipd-0.1.2/packDAMipd/inst/extdata/average_unit_costs_med_incorrect_unit_tablet.csv |only packDAMipd-0.1.2/packDAMipd/inst/extdata/average_unit_costs_med_l_dosagenotin_unitcosts.csv |only packDAMipd-0.1.2/packDAMipd/inst/extdata/average_unit_costs_med_nodrugname.csv |only packDAMipd-0.1.2/packDAMipd/inst/extdata/average_unit_costs_med_noform.csv |only packDAMipd-0.1.2/packDAMipd/inst/extdata/average_unit_costs_med_nullcolmedname.csv |only packDAMipd-0.1.2/packDAMipd/inst/extdata/average_unit_costs_med_unitnotunique.csv |only packDAMipd-0.1.2/packDAMipd/inst/extdata/blank.csv |only packDAMipd-0.1.2/packDAMipd/inst/extdata/costs_error.csv |only packDAMipd-0.1.2/packDAMipd/inst/extdata/genlin_data.csv |only packDAMipd-0.1.2/packDAMipd/inst/extdata/resource_use.csv |only packDAMipd-0.1.2/packDAMipd/inst/extdata/resource_use_hc.csv |only packDAMipd-0.1.2/packDAMipd/inst/extdata/resource_use_l.csv |only packDAMipd-0.1.2/packDAMipd/inst/extdata/resource_use_l2.csv |only packDAMipd-0.1.2/packDAMipd/inst/extdata/resource_use_l_bottlesize.csv |only packDAMipd-0.1.2/packDAMipd/inst/extdata/resource_use_l_bottlesize_unitsep.csv |only packDAMipd-0.1.2/packDAMipd/inst/extdata/resource_use_l_doseunit.csv |only packDAMipd-0.1.2/packDAMipd/inst/extdata/resource_use_l_noname.csv |only packDAMipd-0.1.2/packDAMipd/inst/extdata/resource_use_l_nonamemed.csv |only packDAMipd-0.1.2/packDAMipd/inst/extdata/resource_use_l_prep.csv |only packDAMipd-0.1.2/packDAMipd/inst/extdata/resource_use_l_t_p.csv |only packDAMipd-0.1.2/packDAMipd/inst/extdata/resource_use_l_timeperiod.csv |only packDAMipd-0.1.2/packDAMipd/inst/extdata/resource_use_p.csv |only 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packDAMipd-0.2.0/packDAMipd/DESCRIPTION | 17 packDAMipd-0.2.0/packDAMipd/MD5 | 208 ++++-- packDAMipd-0.2.0/packDAMipd/NAMESPACE | 26 packDAMipd-0.2.0/packDAMipd/R/1_model_functions.R | 3 packDAMipd-0.2.0/packDAMipd/R/2a_parameter_estimation_functions.R | 8 packDAMipd-0.2.0/packDAMipd/R/2b_parameter_estimation_survival_functions.R | 1 packDAMipd-0.2.0/packDAMipd/R/3a_trialdata_analysis_input_functions.R | 1 packDAMipd-0.2.0/packDAMipd/R/3b_outcome_analysis_functions.R | 76 ++ packDAMipd-0.2.0/packDAMipd/R/3c_costing_medication_functions.R |only packDAMipd-0.2.0/packDAMipd/R/3c_costing_resource_use_functions.R |only packDAMipd-0.2.0/packDAMipd/R/3d_decision_analysis_functions.R | 54 + packDAMipd-0.2.0/packDAMipd/R/4b_probabilistic_sensitivity_analysis_functions.R | 3 packDAMipd-0.2.0/packDAMipd/R/help_cost_analysis_functions.R | 313 +++++++++- packDAMipd-0.2.0/packDAMipd/R/help_parameter_estimation_functions.R | 25 packDAMipd-0.2.0/packDAMipd/inst/doc/Deterministic_sensitivity_analysis.R | 34 - packDAMipd-0.2.0/packDAMipd/inst/doc/Deterministic_sensitivity_analysis.Rmd | 92 ++ packDAMipd-0.2.0/packDAMipd/inst/doc/Deterministic_sensitivity_analysis.html | 209 +----- packDAMipd-0.2.0/packDAMipd/inst/doc/Probabilstic_sensitivity_analysis.R | 24 packDAMipd-0.2.0/packDAMipd/inst/doc/Probabilstic_sensitivity_analysis.Rmd | 82 +- packDAMipd-0.2.0/packDAMipd/inst/doc/Probabilstic_sensitivity_analysis.html | 168 ++--- packDAMipd-0.2.0/packDAMipd/inst/doc/Sick_sicker_age_dependent.R | 33 - packDAMipd-0.2.0/packDAMipd/inst/doc/Sick_sicker_age_dependent.Rmd | 97 ++- packDAMipd-0.2.0/packDAMipd/inst/doc/Sick_sicker_age_dependent.html | 101 +-- packDAMipd-0.2.0/packDAMipd/inst/doc/Simple_sick_sicker.R | 35 - packDAMipd-0.2.0/packDAMipd/inst/doc/Simple_sick_sicker.Rmd | 80 +- packDAMipd-0.2.0/packDAMipd/inst/doc/Simple_sick_sicker.html | 76 +- packDAMipd-0.2.0/packDAMipd/inst/doc/cycle_dependent.R | 10 packDAMipd-0.2.0/packDAMipd/inst/doc/cycle_dependent.Rmd | 69 +- packDAMipd-0.2.0/packDAMipd/inst/doc/cycle_dependent.html | 66 +- packDAMipd-0.2.0/packDAMipd/inst/extdata/Med_calc.xlsx |only packDAMipd-0.2.0/packDAMipd/inst/extdata/Med_calc_noconvfactorcol.xlsx |only packDAMipd-0.2.0/packDAMipd/inst/extdata/Med_calc_nodrugcol.xlsx |only packDAMipd-0.2.0/packDAMipd/inst/extdata/Med_calc_noformcol.xlsx |only packDAMipd-0.2.0/packDAMipd/inst/extdata/Med_calc_nounitcol.xlsx |only packDAMipd-0.2.0/packDAMipd/inst/extdata/Med_calc_testNA.xlsx |only packDAMipd-0.2.0/packDAMipd/inst/extdata/Med_calc_unit_notright.xlsx |only packDAMipd-0.2.0/packDAMipd/inst/extdata/NHS_costs_2019_AandE.xlsx |only packDAMipd-0.2.0/packDAMipd/inst/extdata/NHS_costs_2019_AandE_nocode.csv |only packDAMipd-0.2.0/packDAMipd/inst/extdata/National_schedule_of_NHS_costs_2019.csv |only packDAMipd-0.2.0/packDAMipd/inst/extdata/National_schedule_of_NHS_costs_2019_AandE.csv |only packDAMipd-0.2.0/packDAMipd/inst/extdata/National_schedule_of_NHS_costs_2019_error.csv |only 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packDAMipd-0.2.0/packDAMipd/inst/extdata/average_unit_costs_med_brand_sizecol_error.csv |only packDAMipd-0.2.0/packDAMipd/inst/extdata/average_unit_costs_med_brand_unitnotidentify.csv |only packDAMipd-0.2.0/packDAMipd/inst/extdata/average_unit_costs_med_formcolname_error.csv |only packDAMipd-0.2.0/packDAMipd/inst/extdata/average_unit_costs_med_namecolname_error.csv |only packDAMipd-0.2.0/packDAMipd/inst/extdata/average_unit_costs_med_nounitcost.csv |only packDAMipd-0.2.0/packDAMipd/inst/extdata/desktop.ini |only packDAMipd-0.2.0/packDAMipd/inst/extdata/eq5d.RDS |only packDAMipd-0.2.0/packDAMipd/inst/extdata/medication.xlsx |only packDAMipd-0.2.0/packDAMipd/inst/extdata/medication_all.xlsx |only packDAMipd-0.2.0/packDAMipd/inst/extdata/medication_all_no_tabname.xlsx |only packDAMipd-0.2.0/packDAMipd/inst/extdata/medication_liq.xlsx |only packDAMipd-0.2.0/packDAMipd/inst/extdata/medication_liq_bottlevol_unitdiff.xlsx |only 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packDAMipd-0.2.0/packDAMipd/inst/extdata/resource_use_ae_ip_lengthtypecodediff.csv |only packDAMipd-0.2.0/packDAMipd/inst/extdata/resource_use_ae_ip_lessnumuse.csv |only packDAMipd-0.2.0/packDAMipd/inst/extdata/resource_use_ae_ip_nonumusecol.csv |only packDAMipd-0.2.0/packDAMipd/inst/extdata/resource_use_ae_ip_notypecol.csv |only packDAMipd-0.2.0/packDAMipd/inst/extdata/resource_use_hc_2_codes.csv | 2 packDAMipd-0.2.0/packDAMipd/inst/extdata/resource_use_hc_ip.csv |only packDAMipd-0.2.0/packDAMipd/inst/extdata/resource_use_hc_ip_el_missing.csv |only packDAMipd-0.2.0/packDAMipd/inst/extdata/resource_use_hc_ip_nocol.csv |only packDAMipd-0.2.0/packDAMipd/inst/extdata/resource_use_hc_ip_nocol_numuse.csv |only packDAMipd-0.2.0/packDAMipd/inst/extdata/resource_use_hc_ip_nocols.csv |only packDAMipd-0.2.0/packDAMipd/inst/extdata/resource_use_hc_ip_noelcol.csv |only packDAMipd-0.2.0/packDAMipd/inst/extdata/resource_use_hc_ip_nonumuse.csv |only packDAMipd-0.2.0/packDAMipd/inst/extdata/resource_use_hc_ip_numuse_missing.csv |only packDAMipd-0.2.0/packDAMipd/inst/extdata/resource_use_hc_ip_numuse_wrong.csv |only packDAMipd-0.2.0/packDAMipd/inst/extdata/test.xlsx |only packDAMipd-0.2.0/packDAMipd/man/costing_AandE_admission.Rd |only packDAMipd-0.2.0/packDAMipd/man/costing_inpatient_daycase_admission.Rd |only packDAMipd-0.2.0/packDAMipd/man/costing_resource_use.Rd | 4 packDAMipd-0.2.0/packDAMipd/man/encode_codes_data.Rd |only packDAMipd-0.2.0/packDAMipd/man/generate_wt_time_units.Rd |only packDAMipd-0.2.0/packDAMipd/man/generate_wt_vol_units.Rd |only packDAMipd-0.2.0/packDAMipd/man/get_col_multiple_pattern.Rd |only packDAMipd-0.2.0/packDAMipd/man/get_cost_AandE_code.Rd |only packDAMipd-0.2.0/packDAMipd/man/get_cost_AandE_description.Rd |only packDAMipd-0.2.0/packDAMipd/man/get_cost_ip_dc_description.Rd |only packDAMipd-0.2.0/packDAMipd/man/get_cost_ip_dc_hrg.Rd |only packDAMipd-0.2.0/packDAMipd/man/load_trial_data.Rd | 4 packDAMipd-0.2.0/packDAMipd/man/microcosting_liquids_long.Rd |only packDAMipd-0.2.0/packDAMipd/man/microcosting_liquids_wide.Rd |only packDAMipd-0.2.0/packDAMipd/man/microcosting_patches_long.Rd |only packDAMipd-0.2.0/packDAMipd/man/microcosting_patches_wide.Rd |only packDAMipd-0.2.0/packDAMipd/man/microcosting_tablets_long.Rd |only packDAMipd-0.2.0/packDAMipd/man/microcosting_tablets_wide.Rd |only packDAMipd-0.2.0/packDAMipd/man/plot_efficiency_frontier.Rd | 5 packDAMipd-0.2.0/packDAMipd/man/return0_if_not_null_na.Rd |only packDAMipd-0.2.0/packDAMipd/man/return_equal_liststring_col.Rd |only packDAMipd-0.2.0/packDAMipd/man/return_equal_liststring_listcol.Rd |only packDAMipd-0.2.0/packDAMipd/man/return_equal_str_col.Rd |only packDAMipd-0.2.0/packDAMipd/man/value_ADL_scores_IPD.Rd | 14 packDAMipd-0.2.0/packDAMipd/man/word2num.Rd | 3 packDAMipd-0.2.0/packDAMipd/tests/testthat/test-2a_parameter_estimation_functions.R | 10 packDAMipd-0.2.0/packDAMipd/tests/testthat/test-3a_trialdata_analysis_input_functions.R | 3 packDAMipd-0.2.0/packDAMipd/tests/testthat/test-3b_outcome_analysis_functions.R | 111 +++ packDAMipd-0.2.0/packDAMipd/tests/testthat/test-3c_costing_medication_functions.R |only packDAMipd-0.2.0/packDAMipd/tests/testthat/test-3c_costing_resource_use_functions.R |only packDAMipd-0.2.0/packDAMipd/tests/testthat/test-help_cost_analysis_functions.R | 75 ++ packDAMipd-0.2.0/packDAMipd/tests/testthat/test-help_parameter_estimation_functions.R | 12 packDAMipd-0.2.0/packDAMipd/vignettes/Deterministic_sensitivity_analysis.Rmd | 92 ++ packDAMipd-0.2.0/packDAMipd/vignettes/Probabilstic_sensitivity_analysis.Rmd | 82 +- packDAMipd-0.2.0/packDAMipd/vignettes/Sick_sicker_age_dependent.Rmd | 97 ++- packDAMipd-0.2.0/packDAMipd/vignettes/Simple_sick_sicker.Rmd | 80 +- packDAMipd-0.2.0/packDAMipd/vignettes/cycle_dependent.Rmd | 69 +- 166 files changed, 1807 insertions(+), 816 deletions(-)
Title: Enhancements for 'broom' and 'easystats' Package Families
Description: Provides helper functions that assist in data
analysis workflows involving regression analyses. The goal is to
combine the functionality offered by different set of packages
('broom', 'broom.mixed', 'parameters', and 'performance') through a
common syntax to return tidy dataframes containing model parameters
and performance measure summaries. The 'grouped_' variants of the
generics provides a convenient way to execute functions across a
combination of grouping variable(s) in a dataframe.
Author: Indrajeet Patil [aut, cre, cph]
(<https://orcid.org/0000-0003-1995-6531>, @patilindrajeets)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between broomExtra versions 4.1.0 dated 2020-10-30 and 4.2.0 dated 2021-02-19
DESCRIPTION | 15 +- MD5 | 28 +++-- NEWS.md | 4 R/hybrid_easystats.R | 36 +++++- README.md | 174 +++++++++++++++++++-------------- build/broomExtra.pdf |binary man/figures/lifecycle-archived.svg |only man/figures/lifecycle-defunct.svg |only man/figures/lifecycle-deprecated.svg |only man/figures/lifecycle-experimental.svg |only man/figures/lifecycle-maturing.svg |only man/figures/lifecycle-questioning.svg |only man/figures/lifecycle-stable.svg |only man/figures/lifecycle-superseded.svg |only man/glance_performance.Rd | 5 man/tidy_parameters.Rd | 13 +- tests/testthat/test-generics.R | 28 ++--- tests/testthat/test-grouped_generics.R | 24 +--- tests/testthat/test-hybrid_generics.R | 26 ++-- 19 files changed, 207 insertions(+), 146 deletions(-)
Title: Pretty Timelines
Description: A library for creating time based charts, like Gantt or timelines. Possible outputs
include 'ggplot' diagrams, 'Plotly' graphs, 'Highchart' widgets and 'data.frames'. Results can be
used in the 'RStudio' viewer pane, in 'RMarkdown' documents or in 'Shiny' apps. In the
interactive outputs created by 'vistime()' and 'hc_vistime()', you can interact with the
plot using mouse hover or zoom.
Author: Sandro Raabe [aut, cre]
Maintainer: Sandro Raabe <sa.ra.online@posteo.de>
Diff between vistime versions 1.1.0 dated 2020-07-25 and 1.2.0 dated 2021-02-19
vistime-1.1.0/vistime/inst/img/ex2-eventfontsize.png |only vistime-1.1.0/vistime/inst/img/ex2-tickfontsize.png |only vistime-1.1.0/vistime/inst/img/ex2-yfontsize.png |only vistime-1.1.0/vistime/inst/img/ex2.png |only vistime-1.1.0/vistime/inst/img/ex3-markersize.png |only vistime-1.1.0/vistime/inst/img/ex3.png |only vistime-1.1.0/vistime/inst/img/ggplot_cust.png |only vistime-1.1.0/vistime/inst/img/highchart_cust.png |only vistime-1.1.0/vistime/inst/img/optimize_y_F.png |only vistime-1.1.0/vistime/inst/img/optimize_y_T.png |only vistime-1.1.0/vistime/inst/img/plotly_cust.png |only vistime-1.2.0/vistime/DESCRIPTION | 19 vistime-1.2.0/vistime/MD5 | 86 vistime-1.2.0/vistime/NAMESPACE | 19 vistime-1.2.0/vistime/NEWS.md | 111 vistime-1.2.0/vistime/R/gg_vistime.R | 7 vistime-1.2.0/vistime/R/hc_vistime.R | 28 vistime-1.2.0/vistime/R/plot_ggplot.R | 6 vistime-1.2.0/vistime/R/plot_highchart.R | 51 vistime-1.2.0/vistime/R/set_y_values.R | 8 vistime-1.2.0/vistime/R/validate_input.R | 44 vistime-1.2.0/vistime/R/vistime.R | 8 vistime-1.2.0/vistime/R/vistime_data.R | 6 vistime-1.2.0/vistime/README.md | 393 vistime-1.2.0/vistime/build/vignette.rds |binary vistime-1.2.0/vistime/inst/WORDLIST | 6 vistime-1.2.0/vistime/inst/doc/gg_vistime-vignette.R |only vistime-1.2.0/vistime/inst/doc/gg_vistime-vignette.Rmd |only vistime-1.2.0/vistime/inst/doc/gg_vistime-vignette.html |only vistime-1.2.0/vistime/inst/doc/hc_vistime-vignette.R |only vistime-1.2.0/vistime/inst/doc/hc_vistime-vignette.Rmd |only vistime-1.2.0/vistime/inst/doc/hc_vistime-vignette.html |only vistime-1.2.0/vistime/inst/doc/vistime-vignette.R | 124 vistime-1.2.0/vistime/inst/doc/vistime-vignette.Rmd | 188 vistime-1.2.0/vistime/inst/doc/vistime-vignette.html | 5280 ------------- vistime-1.2.0/vistime/inst/img/ward_movements.png |only vistime-1.2.0/vistime/man/gg_vistime.Rd | 7 vistime-1.2.0/vistime/man/hc_vistime.Rd | 168 vistime-1.2.0/vistime/man/vistime.Rd | 8 vistime-1.2.0/vistime/man/vistime_data.Rd | 2 vistime-1.2.0/vistime/tests/testthat.R | 3 vistime-1.2.0/vistime/tests/testthat/test_deprecated.R | 4 vistime-1.2.0/vistime/tests/testthat/test_fix_columns.R | 8 vistime-1.2.0/vistime/tests/testthat/test_plot_ggplot.R | 2 vistime-1.2.0/vistime/tests/testthat/test_plot_plotly.R | 21 vistime-1.2.0/vistime/tests/testthat/test_set_colors.R | 2 vistime-1.2.0/vistime/tests/testthat/test_set_order.R | 2 vistime-1.2.0/vistime/tests/testthat/test_set_y_values.R | 20 vistime-1.2.0/vistime/tests/testthat/test_validate_input.R | 41 vistime-1.2.0/vistime/tests/testthat/test_vistime.R | 13 vistime-1.2.0/vistime/tests/testthat/test_vistime_data.R | 2 vistime-1.2.0/vistime/vignettes/gg_vistime-vignette.Rmd |only vistime-1.2.0/vistime/vignettes/hc_vistime-vignette.Rmd |only vistime-1.2.0/vistime/vignettes/vistime-vignette.Rmd | 188 54 files changed, 834 insertions(+), 6041 deletions(-)
Title: Interact with Peak Flow Data in the United Kingdom
Description: Obtain information on peak flow data from the National River Flow Archive (NRFA) in the United Kingdom, either from the Peak Flow Dataset files <https://nrfa.ceh.ac.uk/peak-flow-dataset> once these have been downloaded to the user's computer or using the NRFA's API. These files are in a format suitable for direct use in the 'WINFAP' software, hence the name of the package.
Author: Ilaria Prosdocimi [aut, cre] (<https://orcid.org/0000-0001-8565-094X>),
Luke Shaw [aut] (Luke developped the code to handle the missing and gap
periods for Peaks over threshold records.)
Maintainer: Ilaria Prosdocimi <prosdocimi.ilaria@gmail.com>
Diff between winfapReader versions 0.1-2 dated 2021-02-04 and 0.1-3 dated 2021-02-19
DESCRIPTION | 6 - MD5 | 14 +-- NEWS.md | 15 +-- build/vignette.rds |binary inst/doc/winfapReader.R | 43 +++++---- inst/doc/winfapReader.Rmd | 55 +++++++----- inst/doc/winfapReader.html | 204 ++++++++++++++++++++++++++++++++++++++++++--- vignettes/winfapReader.Rmd | 55 +++++++----- 8 files changed, 303 insertions(+), 89 deletions(-)
Title: Spatial Ecology Miscellaneous Methods
Description: Collection of R functions and data sets for the support of spatial ecology analyses with a focus on pre, core and post modelling analyses of species distribution, niche quantification and community assembly. Written by current and former members and collaborators of the ecospat group of Antoine Guisan, Department of Ecology and Evolution (DEE) and Institute of Earth Surface Dynamics (IDYST), University of Lausanne, Switzerland. Read Di Cola et al. (2016) <doi:10.1111/ecog.02671> for details.
Author: Olivier Broennimann [cre, aut, ctb],
Valeria Di Cola [aut, ctb],
Blaise Petitpierre [ctb],
Frank Breiner [ctb],
Daniel Scherrer [ctb],
Manuela D`Amen [ctb],
Christophe Randin [ctb],
Robin Engler [ctb],
Wim Hordijk [ctb],
Heidi Mod [ctb],
Julien Pottier [ctb],
Mirko Di Febbraro [ctb],
Loic Pellissier [ctb],
Dorothea Pio [ctb],
Ruben Garcia Mateo [ctb],
Anne Dubuis [ctb],
Luigi Maiorano [ctb],
Achilleas Psomas [ctb],
Charlotte Ndiribe [ctb],
Nicolas Salamin [ctb],
Niklaus Zimmermann [ctb],
Antoine Guisan [aut]
Maintainer: Olivier Broennimann <olivier.broennimann@unil.ch>
Diff between ecospat versions 3.1 dated 2020-03-25 and 3.2 dated 2021-02-19
DESCRIPTION | 25 - MD5 | 31 +- NAMESPACE | 5 NEWS | 15 R/ecospat.ESM.R | 10 R/ecospat.SESAM.prr.R | 2 R/ecospat.makeDataFrame.R | 13 R/ecospat.nichedynamic.R | 515 +++++++++++++++++++++------------- R/ecospat.occprep.R | 10 build/partial.rdb |binary build/vignette.rds |binary inst/doc/vignette_ecospat_package.pdf |binary man/ecospat-package.Rd | 2 man/ecospat.cv.glm.Rd | 4 man/ecospat.grid.clim.dyn.Rd | 96 ++++-- man/ecospat.margin.Rd |only man/ecospat.permut.glm.Rd | 4 17 files changed, 465 insertions(+), 267 deletions(-)
Title: A Toolbox for CM SAF NetCDF Data
Description: The Satellite Application Facility on Climate Monitoring (CM SAF)
is a ground segment of the European Organization for the Exploitation of
Meteorological Satellites (EUMETSAT) and one of EUMETSATs Satellite Application
Facilities. The CM SAF contributes to the sustainable monitoring of the climate
system by providing essential climate variables related to the energy and water
cycle of the atmosphere (<http://www.cmsaf.eu>). It is a joint cooperation of eight
National Meteorological and Hydrological Services.
The 'cmsaf' R-package includes a 'shiny' based interface for an easy application of
the 'cmsafops' and 'cmsafvis' packages - the CM SAF R Toolbox. The Toolbox offers an
easy way to prepare, manipulate, analyse and visualize CM SAF NetCDF formatted data.
Other CF conform NetCDF data with time, longitude and latitude dimension should be
applicable, but there is no guarantee for an error-free application.
CM SAF climate data records are provided for free via (<https://wui.cmsaf.eu/safira>).
Detailed information and test data are provided on the CM SAF webpage
(<http://www.cmsaf.eu/R_toolbox>).
Author: Steffen Kothe [aut, cre]
Maintainer: Steffen Kothe <Steffen.Kothe@dwd.de>
Diff between cmsaf versions 3.0.0 dated 2020-10-07 and 3.1.0 dated 2021-02-19
DESCRIPTION | 10 MD5 | 31 NEWS.md | 35 R/cmsaf.R | 2 R/get_grid.R | 8 R/release_questions.R | 36 R/run_toolbox.R | 42 build |only inst/WORDLIST | 5 inst/toolbox/ColorspacePrivates.R | 1236 ++++++++-------- inst/toolbox/global.R | 199 ++ inst/toolbox/server.R | 2923 +++++++++++++++++++++++++++++++++----- inst/toolbox/ui.R | 166 +- inst/toolbox/www/style.css | 526 +++--- man/cmsaf.Rd | 2 tests/spelling.R | 6 tests/spelling.Rout.save | 50 17 files changed, 3916 insertions(+), 1361 deletions(-)
Title: Dynamic Documents for R
Description: Convert R Markdown documents into a variety of formats.
Author: JJ Allaire [aut],
Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Jonathan McPherson [aut],
Javier Luraschi [aut],
Kevin Ushey [aut],
Aron Atkins [aut],
Hadley Wickham [aut],
Joe Cheng [aut],
Winston Chang [aut],
Richard Iannone [aut] (<https://orcid.org/0000-0003-3925-190X>),
Andrew Dunning [ctb] (<https://orcid.org/0000-0003-0464-5036>),
Atsushi Yasumoto [ctb, cph] (<https://orcid.org/0000-0002-8335-495X>,
Number sections Lua filter),
Barret Schloerke [ctb],
Carson Sievert [ctb] (<https://orcid.org/0000-0002-4958-2844>),
Christophe Dervieux [ctb],
Frederik Aust [ctb] (<https://orcid.org/0000-0003-4900-788X>),
Jeff Allen [ctb],
JooYoung Seo [ctb] (<https://orcid.org/0000-0002-4064-6012>),
Malcolm Barrett [ctb],
Rob Hyndman [ctb],
Romain Lesur [ctb],
Roy Storey [ctb],
Ruben Arslan [ctb],
Sergio Oller [ctb],
RStudio, PBC [cph],
jQuery Foundation [cph] (jQuery library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/rmd/h/jquery-AUTHORS.txt),
jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in
inst/rmd/h/jqueryui-AUTHORS.txt),
Mark Otto [ctb] (Bootstrap library),
Jacob Thornton [ctb] (Bootstrap library),
Bootstrap contributors [ctb] (Bootstrap library),
Twitter, Inc [cph] (Bootstrap library),
Alexander Farkas [ctb, cph] (html5shiv library),
Scott Jehl [ctb, cph] (Respond.js library),
Ivan Sagalaev [ctb, cph] (highlight.js library),
Greg Franko [ctb, cph] (tocify library),
John MacFarlane [ctb, cph] (Pandoc templates),
Google, Inc. [ctb, cph] (ioslides library),
Dave Raggett [ctb] (slidy library),
W3C [cph] (slidy library),
Dave Gandy [ctb, cph] (Font-Awesome),
Ben Sperry [ctb] (Ionicons),
Drifty [cph] (Ionicons),
Aidan Lister [ctb, cph] (jQuery StickyTabs),
Benct Philip Jonsson [ctb, cph] (pagebreak Lua filter),
Albert Krewinkel [ctb, cph] (pagebreak Lua filter)
Maintainer: Yihui Xie <xie@yihui.name>
Diff between rmarkdown versions 2.6 dated 2020-12-14 and 2.7 dated 2021-02-19
DESCRIPTION | 16 +-- MD5 | 66 +++++++------ NEWS.md | 31 ++++++ R/github_document.R | 4 R/html_dependencies.R | 91 ++++++++++++++++- R/html_document.R | 73 ++++++-------- R/html_document_base.R | 40 +++++-- R/knit_print.R | 2 R/output_format.R | 2 R/render.R | 15 +- R/render_site.R | 22 +++- R/shiny.R | 23 +++- R/shiny_prerendered.R | 22 +++- R/util.R | 24 ++++ README.md | 2 inst/CITATION | 2 inst/doc/lua-filters.html | 10 + inst/rmarkdown/lua/latex-div.lua | 44 +++++--- inst/rmd/h/default.html | 128 ++++++++----------------- inst/rmd/h/navigation-1.1/codefolding.js | 4 inst/rmd/h/tocify/jquery.tocify.js | 2 man/html-dependencies.Rd | 17 ++- man/html_document.Rd | 157 ++++++++++++++++--------------- man/html_document_base.Rd | 17 ++- man/html_fragment.Rd | 4 man/html_notebook.Rd | 17 ++- man/render_site.Rd | 11 +- tests/testrmd.R | 2 tests/testthat/_snaps |only tests/testthat/helpers.R |only tests/testthat/test-formats.R | 2 tests/testthat/test-github_document.R |only tests/testthat/test-knit_print.R |only tests/testthat/test-lua-filters.R | 8 - tests/testthat/test-notebook.R | 4 tests/testthat/test-shiny.R |only 36 files changed, 536 insertions(+), 326 deletions(-)
Title: Raster Layers for 'ggplot2'
Description: Provides a set of geoms to rasterize only specific layers of the plot while simultaneously keeping all labels and text in vector format. This allows users to keep plots within the reasonable size limit without loosing vector properties of the scale-sensitive information.
Author: Viktor Petukhov [aut, cph],
Teun van den Brand [aut],
Evan Biederstedt [cre, aut]
Maintainer: Evan Biederstedt <evan.biederstedt@gmail.com>
Diff between ggrastr versions 0.2.1 dated 2020-09-14 and 0.2.2 dated 2021-02-19
DESCRIPTION | 6 MD5 | 47 +- R/geom-beeswarm-rast.R | 6 R/geom-boxplot-jitter.R | 8 R/geom-jitter-rast.R | 6 R/geom-point-rast.R | 4 R/geom-quasirandom-rast.R | 4 R/geom-tile-rast.R | 6 R/geom-violin-rast.R | 6 R/rasterise.R | 292 ++++++++-------- README.md | 20 - build/vignette.rds |binary inst/doc/Raster_geoms.R | 11 inst/doc/Raster_geoms.Rmd | 28 + inst/doc/Raster_geoms.html | 741 +++++++++++++++++++------------------------ man/geom_beeswarm_rast.Rd | 4 man/geom_boxplot_jitter.Rd | 4 man/geom_jitter_rast.Rd | 8 man/geom_point_rast.Rd | 8 man/geom_quasirandom_rast.Rd | 4 man/geom_tile_rast.Rd | 8 man/geom_violin_rast.Rd | 8 man/rasterise.Rd | 7 vignettes/Raster_geoms.Rmd | 28 + vignettes/Raster_geoms.md |only 25 files changed, 632 insertions(+), 632 deletions(-)
Title: Tools to Visualize CM SAF NetCDF Data
Description: The Satellite Application Facility on Climate Monitoring (CM SAF)
is a ground segment of the European Organization for the Exploitation of
Meteorological Satellites (EUMETSAT) and one of EUMETSATs Satellite Application
Facilities. The CM SAF contributes to the sustainable monitoring of the climate
system by providing essential climate variables related to the energy and water
cycle of the atmosphere (<http://www.cmsaf.eu>). It is a joint cooperation of eight
National Meteorological and Hydrological Services.
The 'cmsafvis' R-package provides a collection of R-operators for the analysis and
visualization of CM SAF NetCDF data.
CM SAF climate data records are provided for free via (<https://wui.cmsaf.eu/safira>).
Detailed information and test data are provided on the CM SAF webpage
(<http://www.cmsaf.eu/R_toolbox>).
Author: Steffen Kothe [aut, cre]
Maintainer: Steffen Kothe <Steffen.Kothe@dwd.de>
Diff between cmsafvis versions 1.0.1 dated 2020-10-13 and 1.1.0 dated 2021-02-19
DESCRIPTION | 17 MD5 | 188 +-- NAMESPACE | 16 NEWS.md | 20 R/ColorspacePrivates.R | 1236 +++++++++---------- R/absolute_map.R | 146 +- R/absolute_map_builder.R | 152 +- R/adjust_location.R | 4 R/anomaly_map.R | 218 +-- R/apply_mask_clima.R | 46 R/apply_mask_current.R | 75 - R/apply_mask_final.R |only R/attach_file.R | 108 - R/break_num.R | 36 R/calc.parameters.monitor.climate.R |only R/calculate_climatology.R | 553 ++++---- R/calculate_climatology_mean.R |only R/calculate_climatology_outfile.R |only R/check_infile_monitor_climate.R |only R/check_package_dependencies.R | 116 - R/climatology_map.R | 217 +-- R/climatology_map_builder.R | 170 +- R/cmsaf.diff.R |only R/cmsaf.hist.R |only R/cmsaf.hovmoller.R |only R/cmsaf.scatter.R |only R/cmsaf.side.by.side.R |only R/cmsaf.time.series.R |only R/cmsafvis.R | 17 R/compare_grid.R | 86 - R/compare_spatial_range.R | 80 - R/create_country_mask.R | 324 ++--- R/extractFinalOutfile.R | 188 +-- R/extractOutfile.R |only R/extractOutfileMean.R |only R/extract_climate_files.R | 297 ++-- R/fieldmean_and_anomaly_map.R | 57 R/fieldmean_clima.R | 87 - R/fieldmean_current.R | 160 +- R/fieldmean_ensemble.R | 292 ++-- R/fieldmean_plot.R | 108 - R/getColors.R | 104 - R/getMimeType.R | 36 R/getUserOptions.R | 82 - R/get_continental_coordinates.R | 68 - R/get_country_name.R | 76 - R/helper_time_series_compare.R |only R/helpers.R | 124 +- R/is_country.R | 64 - R/is_leap_year.R | 8 R/is_valid_countrycode.R | 22 R/monitor_climate.R | 68 - R/parse_arguments.R | 60 R/plot_abs_map.R | 193 ++- R/plot_abs_map_mean.R |only R/plot_fieldmean.R | 90 - R/plot_fieldmean_and_map.R | 129 +- R/plot_labeling.R | 328 ++--- R/plot_time_series.R |only R/plot_trend.R |only R/plot_warming_stripes.R |only R/quicklook.R | 39 R/ranking.R |only R/recalculateImageDimensions.R | 122 - R/release_questions.R | 36 R/render_hist_plot.R | 87 - R/render_instat_plot.R | 154 +- R/render_plot.R | 1298 ++++++++++---------- R/render_plot_1d.R | 2045 ++++++++++++++++----------------- R/render_plot_1d_advanced.R |only R/render_plot_hist_compare.R |only R/render_plot_hovmoller.R |only R/render_plot_scatter.R |only R/render_plot_side_by_side.R |only R/render_plot_time_series_compare.R |only R/render_preview_plot.R | 55 R/render_region_plot.R | 584 ++++----- R/set_time_locale.R | 115 - R/time_series_plot.R |only R/trend_plot.R |only R/warming_stripes_plot.R |only build |only inst/WORDLIST | 46 man/absolute_map.Rd | 49 man/anomaly_map.Rd | 54 man/climatology_map.Rd | 54 man/cmsaf.diff.Rd |only man/cmsaf.hist.Rd |only man/cmsaf.hovmoller.Rd |only man/cmsaf.scatter.Rd |only man/cmsaf.side.by.side.Rd |only man/cmsaf.time.series.Rd |only man/cmsafvis.Rd | 23 man/fieldmean_and_anomaly_map.Rd | 51 man/fieldmean_plot.Rd | 51 man/helper_time_series_compare.Rd |only man/monitor_climate.Rd | 63 - man/quicklook.Rd | 40 man/recalculateImageDimensions.Rd | 24 man/render_hist_plot.Rd | 12 man/render_instat_plot.Rd | 18 man/render_plot.Rd | 79 - man/render_plot_1d.Rd | 35 man/render_plot_1d_advanced.Rd |only man/render_plot_hist_compare.Rd |only man/render_plot_hovmoller.Rd |only man/render_plot_scatter.Rd |only man/render_plot_side_by_side.Rd |only man/render_plot_time_series_compare.Rd |only man/render_preview_plot.Rd | 10 man/render_region_plot.Rd | 85 - man/time_series_plot.Rd |only man/trend_plot.Rd |only man/warming_stripes_plot.Rd |only tests/spelling.R | 6 tests/spelling.Rout.save |only tests/testthat.R | 8 tests/testthat/test-set_time_locale.R | 20 118 files changed, 5634 insertions(+), 6095 deletions(-)
Title: Species Sensitivity Distributions
Description: Species sensitivity distributions are
cumulative probability distributions which are fitted to
toxicity concentrations for different species as described by
Posthuma et al.(2001) <isbn:9781566705783>.
The ssdtools package uses Maximum Likelihood to fit distributions
such as the log-normal, gamma, log-logistic,
log-Gumbel, Gompertz and Weibull.
The user can provide custom distributions.
Multiple distributions can be averaged using Information Criteria.
Confidence intervals on hazard concentrations and proportions are produced by
parametric bootstrapping.
Author: Joe Thorley [aut, cre, ctr] (<https://orcid.org/0000-0002-7683-4592>),
Carl Schwarz [aut, ctr],
Angeline Tillmanns [ctb],
Ali Azizishirazi [ctb],
Rebecca Fisher [ctb],
David Fox [ctb],
Kathleen McTavish [ctb],
Heather Thompson [ctb],
Andy Teucher [ctb],
Emilie Doussantousse [ctb],
Stephanie Hazlitt [ctb],
Nadine Hussein [ctb],
Nan-Hung Hsieh [ctb],
Sergio Ibarra Espinosa [ctb],
Province of British Columbia [cph]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between ssdtools versions 0.3.2 dated 2020-09-02 and 0.3.3 dated 2021-02-19
DESCRIPTION | 12 - MD5 | 66 +++---- NEWS.md | 7 R/utils.R | 23 +- README.md | 68 ++++--- build/vignette.rds |binary inst/doc/distributions.Rmd | 4 inst/doc/distributions.html | 22 +- inst/doc/exposure-plots.html | 20 +- inst/doc/faqs.html | 16 + inst/doc/small-sample-bias-ref.html | 14 + inst/doc/ssdtools.Rmd | 2 inst/doc/ssdtools.html | 22 +- man/comma_signif.Rd | 18 +- man/figures/README-unnamed-chunk-10-1.png |binary man/figures/README-unnamed-chunk-5-1.png |binary man/ssdtools-package.Rd | 1 tests/testthat/test-autoplot.R |only tests/testthat/test-burrIII2.R | 39 ++-- tests/testthat/test-fit.R | 8 tests/testthat/test-gompertz.R | 28 ++- tests/testthat/test-hc.R | 264 +++++++++++++----------------- tests/testthat/test-hp.R | 239 +++++++++++++++++---------- tests/testthat/test-lgumbel.R | 40 ++-- tests/testthat/test-llog.R | 15 - tests/testthat/test-pareto.R | 38 ++-- tests/testthat/test-plot-cdf.R |only tests/testthat/test-plot-cf.R |only tests/testthat/test-plot.R | 40 ---- tests/testthat/test-predict.R | 32 +-- tests/testthat/test-schwarz-tillmans.R | 57 ++---- tests/testthat/test-ssd-plot.R |only tests/testthat/test-test-data.R | 16 + tests/testthat/test-utils.R | 34 +++ vignettes/distributions.Rmd | 4 vignettes/ssdtools.Rmd | 2 36 files changed, 634 insertions(+), 517 deletions(-)
Title: Functions for Behavioral Science Researchers
Description: Miscellaneous functions to simplify and expedite
analyses of experimental data. Examples include a function
that plots sample means of groups in a factorial experimental design,
a function that conducts robust regressions with bootstrapped samples,
and a function that conducts robust two-way analysis of variance.
Author: Jin Kim [aut, cre] (<https://orcid.org/0000-0002-5013-3958>)
Maintainer: Jin Kim <jin.m.kim@yale.edu>
Diff between kim versions 0.2.71 dated 2021-02-01 and 0.2.96 dated 2021-02-19
DESCRIPTION | 10 +++---- MD5 | 46 +++++++++++++++++++------------- NAMESPACE | 5 +++ NEWS.md | 6 +++- R/compare_datasets.R | 36 +++++++++++++++++++++---- R/desc_stats.R | 6 ++-- R/floodlight_2_by_continuous.R |only R/ggsave_quick.R | 28 ++++++++++++++------ R/merge_data_table_list.R |only R/merge_data_tables.R |only R/onAttach.R | 12 ++++---- R/order_rows_specifically_in_dt.R |only R/plot_group_means.R | 49 ++++++++++++++++++++--------------- R/prep.R | 42 +++++++++++++++++++++++++----- R/print_loop_progress.R | 2 - R/setup_r_env.R | 10 +++---- R/start_kim.R | 12 +++++++- README.md | 9 ++++++ inst/CITATION | 4 +- man/floodlight_2_by_continuous.Rd |only man/ggsave_quick.Rd | 21 +++++++++------ man/merge_data_table_list.Rd |only man/merge_data_tables.Rd |only man/order_rows_specifically_in_dt.Rd |only man/plot_group_means.Rd | 7 +++++ man/prep.Rd | 18 ++++++++++-- man/print_loop_progress.Rd | 2 - man/start_kim.Rd | 7 ++++- 28 files changed, 234 insertions(+), 98 deletions(-)
Title: A Minimum-Dependency 'R' Interface to the 'NHL' API
Description: Retrieves and processes the data exposed by the open 'NHL' API. This includes information on players, teams, games, tournaments, drafts, standings, schedules and other endpoints. A lower-level interface to access the data via URLs directly is also provided.
Author: Jozef Hajnala [aut, cre]
Maintainer: Jozef Hajnala <jozef.hajnala@gmail.com>
Diff between nhlapi versions 0.1.2 dated 2020-05-25 and 0.1.3 dated 2021-02-19
DESCRIPTION | 10 +-- MD5 | 65 ++++++++++++----------- NAMESPACE | 5 + NEWS.md |only R/nhl_awards.R | 2 R/nhl_games.R | 24 ++++---- R/nhl_log.R | 1 R/nhl_plot_utils.R |only R/nhl_seasons.R | 2 R/nhl_utils.R | 31 +++++++---- README.md | 43 ++++++++++++--- build/vignette.rds |binary inst/doc/low_level_api.html | 84 ++++++++++++++---------------- man/make_log.Rd | 18 ++++-- man/nhl_awards.Rd | 2 man/nhl_from_json.Rd | 11 ++- man/nhl_games.Rd | 16 ++--- man/nhl_get_data_worker.Rd | 11 ++- man/nhl_players_seasons.Rd | 3 - man/nhl_plot_rink.Rd |only man/nhl_schedule.Rd | 10 ++- man/nhl_seasons.Rd | 2 man/nhl_teams.Rd | 2 man/nhl_url.Rd | 12 ++-- man/nhl_url_add_params.Rd | 4 - man/nhl_url_players_stats.Rd | 4 - man/nhl_url_schedule.Rd | 10 ++- man/nhl_url_teams.Rd | 4 - man/util_generate_sysdata.Rd | 3 - man/util_map_player_ids.Rd | 3 - tests/testthat/prototype |only tests/testthat/setup.R | 62 ++++++++++++++++++---- tests/testthat/test.nhl_players_seasons.R | 17 ++++++ tests/testthat/test.nhl_plot_rink.R |only tests/testthat/test.nhl_standings.R | 4 - tests/testthat/test.nhl_utils.R | 8 ++ 36 files changed, 307 insertions(+), 166 deletions(-)
Title: Social Contact Matrices for 152 Countries
Description: Data package for the supplementary data in Prem et al. (2017)
<doi:10.1371/journal.pcbi.1005697>.
Provides easy access to contact data for 152 countries, for use in
epidemiological, demographic or social sciences research.
Author: Hugo Gruson [cre, aut, cph] (<https://orcid.org/0000-0002-4094-1476>),
Kiesha Prem [dtc] (<https://orcid.org/0000-0003-0528-798X>),
Alex Richard Cook [dtc] (<https://orcid.org/0000-0002-6271-5832>),
Mark Jit [dtc] (<https://orcid.org/0000-0001-6658-8255>)
Maintainer: Hugo Gruson <hugo.gruson+R@normalesup.org>
Diff between contactdata versions 0.1 dated 2020-09-23 and 0.2.0 dated 2021-02-19
contactdata-0.1/contactdata/inst/doc/visualise.R |only contactdata-0.1/contactdata/inst/doc/visualise.Rmd |only contactdata-0.1/contactdata/inst/doc/visualise.html |only contactdata-0.1/contactdata/tests/testthat/list_countries.R |only contactdata-0.1/contactdata/vignettes/visualise.Rmd |only contactdata-0.2.0/contactdata/DESCRIPTION | 10 contactdata-0.2.0/contactdata/MD5 | 41 - contactdata-0.2.0/contactdata/NAMESPACE | 1 contactdata-0.2.0/contactdata/NEWS.md | 7 contactdata-0.2.0/contactdata/R/age_countries.R |only contactdata-0.2.0/contactdata/R/contact_matrix.R | 2 contactdata-0.2.0/contactdata/README.md | 21 contactdata-0.2.0/contactdata/build/partial.rdb |binary contactdata-0.2.0/contactdata/build/vignette.rds |binary contactdata-0.2.0/contactdata/inst/CITATION | 1 contactdata-0.2.0/contactdata/inst/doc/countries.html | 363 ++-------- contactdata-0.2.0/contactdata/inst/doc/visualise_age.R |only contactdata-0.2.0/contactdata/inst/doc/visualise_age.Rmd |only contactdata-0.2.0/contactdata/inst/doc/visualise_age.html |only contactdata-0.2.0/contactdata/inst/doc/visualise_contact.R |only contactdata-0.2.0/contactdata/inst/doc/visualise_contact.Rmd |only contactdata-0.2.0/contactdata/inst/doc/visualise_contact.html |only contactdata-0.2.0/contactdata/inst/extdata/contact_all.rds |only contactdata-0.2.0/contactdata/inst/extdata/contact_home.rds |only contactdata-0.2.0/contactdata/inst/extdata/contact_other.rds |only contactdata-0.2.0/contactdata/inst/extdata/contact_school.rds |only contactdata-0.2.0/contactdata/inst/extdata/contact_work.rds |only contactdata-0.2.0/contactdata/inst/extdata/population_byage.rds |only contactdata-0.2.0/contactdata/man/age_df_countries.Rd |only contactdata-0.2.0/contactdata/tests/testthat/test-age_df_countries.R |only contactdata-0.2.0/contactdata/tests/testthat/test-list_countries.R |only contactdata-0.2.0/contactdata/vignettes/visualise_age.Rmd |only contactdata-0.2.0/contactdata/vignettes/visualise_contact.Rmd |only 33 files changed, 144 insertions(+), 302 deletions(-)