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Title: Read and Write Sparse Matrices in 'SVMLight' and 'LibSVM'
Formats
Description: Read and write labelled sparse matrices in text format as used by
software such as 'SVMLight', 'LibSVM', 'ThunderSVM', 'LibFM', 'xLearn', 'XGBoost', 'LightGBM',
and others. Supports labelled data for regression, classification (binary, multi-class, multi-label),
and ranking (with 'qid' field), and can handle header metadata and comments in files.
Author: David Cortes
Maintainer: David Cortes <david.cortes.rivera@gmail.com>
Diff between readsparse versions 0.1.1-2 dated 2021-04-06 and 0.1.2 dated 2021-04-07
DESCRIPTION | 8 - MD5 | 26 ++-- NAMESPACE | 1 R/RcppExports.R | 16 +++ R/read_sparse.R | 38 ++++++- man/read.sparse.Rd | 5 man/readsparse_nonascii_support.Rd |only man/write.sparse.Rd | 2 src/RcppExports.cpp | 43 ++++++++ src/Rwrapper.cpp | 197 +++++++++++++++++++++++++++++++++---- src/python_streams.h |only src/reader.h | 21 ++- src/readsparse_internal.h | 35 ++++++ src/utils.h | 103 +++++++++++++++++++ tests/testthat/test-read-write.R | 60 ++++++----- 15 files changed, 481 insertions(+), 74 deletions(-)
Title: Algorithms for Quantitative Pedology
Description: The Algorithms for Quantitative Pedology (AQP) project was started in 2009 to organize a loosely-related set of concepts and source code on the topic of soil profile visualization, aggregation, and classification into this package (aqp). Over the past 8 years, the project has grown into a suite of related R packages that enhance and simplify the quantitative analysis of soil profile data. Central to the AQP project is a new vocabulary of specialized functions and data structures that can accommodate the inherent complexity of soil profile information; freeing the scientist to focus on ideas rather than boilerplate data processing tasks <doi:10.1016/j.cageo.2012.10.020>. These functions and data structures have been extensively tested and documented, applied to projects involving hundreds of thousands of soil profiles, and deeply integrated into widely used tools such as SoilWeb <https://casoilresource.lawr.ucdavis.edu/soilweb-apps/>. Components of the AQP project (aqp, soilDB, sharpshootR, soilReports packages) serve an important role in routine data analysis within the USDA-NRCS Soil Science Division. The AQP suite of R packages offer a convenient platform for bridging the gap between pedometric theory and practice.
Author: Dylan Beaudette [aut, cre],
Pierre Roudier [aut, ctb],
Andrew Brown [aut, ctb]
Maintainer: Dylan Beaudette <dylan.beaudette@usda.gov>
Diff between aqp versions 1.27 dated 2021-01-26 and 1.29 dated 2021-04-07
aqp-1.27/aqp/R/make.segments.R |only aqp-1.27/aqp/R/mutate.R |only aqp-1.27/aqp/R/permute_profile.R |only aqp-1.27/aqp/R/test_hz_logic.R |only aqp-1.27/aqp/inst/CITATION |only aqp-1.27/aqp/man/find-fix-overlap.Rd |only aqp-1.27/aqp/man/group_by.Rd |only aqp-1.27/aqp/man/mutate.Rd |only aqp-1.27/aqp/man/permute_profile.Rd |only aqp-1.27/aqp/man/summarize.Rd |only aqp-1.27/aqp/man/union-list-missing-method.Rd |only aqp-1.29/aqp/DESCRIPTION | 16 aqp-1.29/aqp/MD5 | 222 +-- aqp-1.29/aqp/NAMESPACE | 6 aqp-1.29/aqp/NEWS.md | 44 aqp-1.29/aqp/R/AAAA.R | 15 aqp-1.29/aqp/R/Class-SoilProfileCollection.R | 44 aqp-1.29/aqp/R/HzDepthLogicSubset.R |only aqp-1.29/aqp/R/SoilProfileCollection-methods.R | 189 -- aqp-1.29/aqp/R/SoilProfileCollection-operators.R | 540 ++++---- aqp-1.29/aqp/R/SoilProfileCollection-setters.R | 23 aqp-1.29/aqp/R/SoilProfileCollection-slice-methods.R | 37 aqp-1.29/aqp/R/SoilProfileCollection-spatial.R | 37 aqp-1.29/aqp/R/accuracy_uncertainty.R | 2 aqp-1.29/aqp/R/addBracket.R | 24 aqp-1.29/aqp/R/addVolumeFraction.R | 17 aqp-1.29/aqp/R/alignTransect.R |only aqp-1.29/aqp/R/bootstrapSoilTexture.R | 2 aqp-1.29/aqp/R/checkHzDepthLogic.R | 188 +- aqp-1.29/aqp/R/combine.R | 106 - aqp-1.29/aqp/R/contrastChart.R | 11 aqp-1.29/aqp/R/data-documentation.R | 663 ---------- aqp-1.29/aqp/R/datadots.R |only aqp-1.29/aqp/R/dice.R |only aqp-1.29/aqp/R/duplicate.R | 2 aqp-1.29/aqp/R/estimateAWC.R |only aqp-1.29/aqp/R/evalMissingData.R | 4 aqp-1.29/aqp/R/explainPlotSPC.R | 31 aqp-1.29/aqp/R/factor-level-setters.R | 30 aqp-1.29/aqp/R/fillHzGaps.R |only aqp-1.29/aqp/R/findOverlap-fixOverlap.R | 471 +++++-- aqp-1.29/aqp/R/getCambicBounds.R | 2 aqp-1.29/aqp/R/getLastHorizonID.R |only aqp-1.29/aqp/R/glom.R | 316 +--- aqp-1.29/aqp/R/glomApply.R | 2 aqp-1.29/aqp/R/group_by.R | 61 aqp-1.29/aqp/R/harmonize.R | 2 aqp-1.29/aqp/R/mixMunsell.R | 338 +++-- aqp-1.29/aqp/R/munsell2rgb.R | 27 aqp-1.29/aqp/R/mutate_profile.R | 38 aqp-1.29/aqp/R/panel.depth_function.R | 469 ++++--- aqp-1.29/aqp/R/perturb.R |only aqp-1.29/aqp/R/plotColorMixture.R | 115 + aqp-1.29/aqp/R/plotMultipleSPC.R | 307 ++++ aqp-1.29/aqp/R/plotSPC.R | 420 ++++-- aqp-1.29/aqp/R/prepanel.depth_function.R | 75 - aqp-1.29/aqp/R/previewColors.R | 19 aqp-1.29/aqp/R/profile_compare.R | 16 aqp-1.29/aqp/R/repairMissingHzDepths.R |only aqp-1.29/aqp/R/sim.R | 236 +-- aqp-1.29/aqp/R/sketch-utils.R | 11 aqp-1.29/aqp/R/spc2mpspline.R | 64 aqp-1.29/aqp/R/split.R | 79 - aqp-1.29/aqp/R/summarize.R | 46 aqp-1.29/aqp/R/transform.R |only aqp-1.29/aqp/build/partial.rdb |binary aqp-1.29/aqp/man/HzDepthLogicSubset.Rd |only aqp-1.29/aqp/man/SoilProfileCollection-plotting-methods.Rd | 99 + aqp-1.29/aqp/man/SoilTextureLevels.Rd | 58 aqp-1.29/aqp/man/addBracket.Rd | 8 aqp-1.29/aqp/man/alignTransect.Rd |only aqp-1.29/aqp/man/bootstrapSoilTexture.Rd | 2 aqp-1.29/aqp/man/ca630.Rd | 57 aqp-1.29/aqp/man/checkHzDepthLogic.Rd | 18 aqp-1.29/aqp/man/combine-SoilProfileCollection-method.Rd | 28 aqp-1.29/aqp/man/correctAWC.Rd |only aqp-1.29/aqp/man/dice.Rd |only aqp-1.29/aqp/man/dot-data_dots.Rd |only aqp-1.29/aqp/man/duplicate.Rd | 3 aqp-1.29/aqp/man/estimateAWC.Rd |only aqp-1.29/aqp/man/evalMissingData.Rd | 2 aqp-1.29/aqp/man/explainPlotSPC.Rd | 23 aqp-1.29/aqp/man/fillHzGaps.Rd |only aqp-1.29/aqp/man/findOverlap.Rd |only aqp-1.29/aqp/man/fixOverlap.Rd |only aqp-1.29/aqp/man/getCambicBounds.Rd | 2 aqp-1.29/aqp/man/getLastHorizonID.Rd |only aqp-1.29/aqp/man/glom-SoilProfileCollection-method.Rd | 22 aqp-1.29/aqp/man/groupSPC.Rd |only aqp-1.29/aqp/man/harmonize-SoilProfileCollection-method.Rd | 2 aqp-1.29/aqp/man/mixMunsell.Rd | 60 aqp-1.29/aqp/man/overlapMetrics.Rd |only aqp-1.29/aqp/man/panel.depth_function.Rd | 135 +- aqp-1.29/aqp/man/pbindlist.Rd | 2 aqp-1.29/aqp/man/perturb.Rd |only aqp-1.29/aqp/man/plotColorMixture.Rd | 15 aqp-1.29/aqp/man/plotMultipleSPC.Rd | 138 +- aqp-1.29/aqp/man/previewColors.Rd | 16 aqp-1.29/aqp/man/profileGroupLabels.Rd | 3 aqp-1.29/aqp/man/repairMissingHzDepths.Rd |only aqp-1.29/aqp/man/rgb2munsell.Rd | 4 aqp-1.29/aqp/man/sierraTransect.Rd | 4 aqp-1.29/aqp/man/sim.Rd | 86 - aqp-1.29/aqp/man/singlebracket.Rd | 24 aqp-1.29/aqp/man/slice-methods.Rd | 18 aqp-1.29/aqp/man/sp1.Rd | 48 aqp-1.29/aqp/man/sp2.Rd | 73 - aqp-1.29/aqp/man/sp3.Rd | 130 - aqp-1.29/aqp/man/sp4.Rd | 127 - aqp-1.29/aqp/man/sp5.Rd | 139 -- aqp-1.29/aqp/man/sp6.Rd | 44 aqp-1.29/aqp/man/spc2mpspline-SoilProfileCollection-method.Rd | 2 aqp-1.29/aqp/man/split-SoilProfileCollection-method.Rd | 2 aqp-1.29/aqp/man/summarizeSPC.Rd |only aqp-1.29/aqp/man/transform.Rd |only aqp-1.29/aqp/tests/testthat/test-DT-tbl.R | 43 aqp-1.29/aqp/tests/testthat/test-SPC-combine.R | 3 aqp-1.29/aqp/tests/testthat/test-SPC-k-keywords.R |only aqp-1.29/aqp/tests/testthat/test-SPC-objects.R | 25 aqp-1.29/aqp/tests/testthat/test-alignTransect.R |only aqp-1.29/aqp/tests/testthat/test-awc.R |only aqp-1.29/aqp/tests/testthat/test-checkHzDepthLogic.R | 41 aqp-1.29/aqp/tests/testthat/test-color-signature.R | 9 aqp-1.29/aqp/tests/testthat/test-dice.R |only aqp-1.29/aqp/tests/testthat/test-dplyr-verbs.R | 18 aqp-1.29/aqp/tests/testthat/test-fillHzGaps.R |only aqp-1.29/aqp/tests/testthat/test-fix-find-overlap.R |only aqp-1.29/aqp/tests/testthat/test-getLastHorizonID.R |only aqp-1.29/aqp/tests/testthat/test-glom.R | 29 aqp-1.29/aqp/tests/testthat/test-mixMunsell.R | 42 aqp-1.29/aqp/tests/testthat/test-plotSPC.R | 14 aqp-1.29/aqp/tests/testthat/test-repairMissingHzDepths.R |only aqp-1.29/aqp/tests/testthat/test-sim.R | 23 aqp-1.29/aqp/tests/testthat/test-slabPlot.R |only aqp-1.29/aqp/tests/testthat/test-spc2mpspline.R | 2 135 files changed, 3838 insertions(+), 3172 deletions(-)
Title: DataCrunchers (PogromcyDanych) is the Massive Online Open Course
that Brings R and Statistics to the People
Description: The data sets used in the online course ,,PogromcyDanych''. You can process data in many ways. The course Data Crunchers will introduce you to this variety. For this reason we will work on datasets of different size (from several to several hundred thousand rows), with various level of complexity (from two to two thousand columns) and prepared in different formats (text data, quantitative data and qualitative data). All of these data sets were gathered in a single big package called PogromcyDanych to facilitate access to them. It contains all sorts of data sets such as data about offer prices of cars, results of opinion polls, information about changes in stock market indices, data about names given to newborn babies, ski jumping results or information about outcomes of breast cancer patients treatment.
Author: Przemyslaw Biecek
Maintainer: Przemyslaw Biecek <przemyslaw.biecek@gmail.com>
Diff between PogromcyDanych versions 1.5 dated 2015-03-01 and 1.7 dated 2021-04-07
PogromcyDanych-1.5/PogromcyDanych/data/datalist |only PogromcyDanych-1.7/PogromcyDanych/DESCRIPTION | 11 +++++----- PogromcyDanych-1.7/PogromcyDanych/MD5 | 5 +--- PogromcyDanych-1.7/PogromcyDanych/man/PogromcyDanych-package.Rd | 2 - 4 files changed, 9 insertions(+), 9 deletions(-)
More information about PogromcyDanych at CRAN
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Title: Dynamically Pluralize Phrases
Description: Converts English phrases to singular or plural form based on
the length of an associated vector. Contains helper functions to
create natural language lists from vectors and to include the length
of a vector in natural language.
Author: Alexander Rossell Hayes [aut, cre, cph]
(<https://orcid.org/0000-0001-9412-0457>)
Maintainer: Alexander Rossell Hayes <alexander@rossellhayes.com>
Diff between plu versions 0.2.0 dated 2021-01-11 and 0.2.1 dated 2021-04-07
plu-0.2.0/plu/R/isTRUE.R |only plu-0.2.1/plu/DESCRIPTION | 19 - plu-0.2.1/plu/MD5 | 51 ++--- plu-0.2.1/plu/NAMESPACE | 1 plu-0.2.1/plu/NEWS.md | 28 ++ plu-0.2.1/plu/R/errors.R |only plu-0.2.1/plu/R/get_fun.R | 38 +-- plu-0.2.1/plu/R/is_capital.R | 65 +++--- plu-0.2.1/plu/R/onLoad.R |only plu-0.2.1/plu/R/plu_more.R | 20 - plu-0.2.1/plu/R/plu_ral.R | 255 ++++++++++++++++++------- plu-0.2.1/plu/R/plu_ralize.R | 54 ++--- plu-0.2.1/plu/R/plu_split.R |only plu-0.2.1/plu/R/plu_stick.R | 54 +---- plu-0.2.1/plu/R/release_questions.R |only plu-0.2.1/plu/R/sysdata.rda |binary plu-0.2.1/plu/R/tosentence.R | 2 plu-0.2.1/plu/README.md | 8 plu-0.2.1/plu/build/plu.pdf |binary plu-0.2.1/plu/man/capitalize.Rd | 7 plu-0.2.1/plu/man/plu-package.Rd | 10 plu-0.2.1/plu/man/plu_ral.Rd | 106 ++++++++-- plu-0.2.1/plu/man/plu_ralize.Rd | 35 +++ plu-0.2.1/plu/man/plu_stick.Rd | 12 - plu-0.2.1/plu/tests/testthat/test-get_fun.R | 4 plu-0.2.1/plu/tests/testthat/test-is_capital.R | 126 ++++++------ plu-0.2.1/plu/tests/testthat/test-plu_ral.R | 188 +++++++++++++++++- plu-0.2.1/plu/tests/testthat/test-plu_ralize.R | 10 plu-0.2.1/plu/tests/testthat/test-plu_stick.R | 43 ---- 29 files changed, 759 insertions(+), 377 deletions(-)
Title: 'Neuroconductor' Base Package with Helper Functions for 'nifti'
Objects
Description: Base package for 'Neuroconductor', which includes many helper
functions that interact with objects of class 'nifti', implemented by
package 'oro.nifti', for reading/writing and also other manipulation
functions.
Author: John Muschelli [aut, cre]
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between neurobase versions 1.32.0 dated 2021-03-31 and 1.32.1 dated 2021-04-07
DESCRIPTION | 6 - MD5 | 18 +-- NAMESPACE | 1 NEWS.md | 4 R/ortho2.R | 7 - R/read_rpi.R | 1 inst/doc/neurobase.html | 13 +- inst/doc/nifti_basics.html | 237 ++++++++++++++++++++++++++++++--------------- inst/doc/simple_io.html | 11 +- man/ortho2.Rd | 2 10 files changed, 201 insertions(+), 99 deletions(-)
Title: Testing Neighbor Effects in Marker-Based Regressions
Description: To incorporate neighbor genotypic identity into genome-wide association studies, the package provides a set of functions for variation partitioning and association mapping. The theoretical background of the method is described in Sato et al. (2021) <doi:10.1038/s41437-020-00401-w>.
Author: Yasuhiro Sato [aut, cre] (<https://orcid.org/0000-0002-6466-723X>),
Eiji Yamamoto [aut],
Kentaro K. Shimizu [aut] (<https://orcid.org/0000-0002-6483-1781>),
Atsushi J. Nagano [aut] (<https://orcid.org/0000-0001-7891-5049>)
Maintainer: Yasuhiro Sato <sato.yasuhiro.36c@kyoto-u.jp>
Diff between rNeighborGWAS versions 1.2.2 dated 2020-11-23 and 1.2.3 dated 2021-04-07
rNeighborGWAS-1.2.2/rNeighborGWAS/README.md |only rNeighborGWAS-1.2.3/rNeighborGWAS/DESCRIPTION | 16 rNeighborGWAS-1.2.3/rNeighborGWAS/MD5 | 32 rNeighborGWAS-1.2.3/rNeighborGWAS/R/nei_lm.R | 196 +- rNeighborGWAS-1.2.3/rNeighborGWAS/R/nei_lmm.R | 220 +- rNeighborGWAS-1.2.3/rNeighborGWAS/R/rNeighborGWAS-package.R | 58 rNeighborGWAS-1.2.3/rNeighborGWAS/build/vignette.rds |binary rNeighborGWAS-1.2.3/rNeighborGWAS/inst/CITATION | 13 rNeighborGWAS-1.2.3/rNeighborGWAS/inst/doc/rNeighborGWAS.R | 201 +- rNeighborGWAS-1.2.3/rNeighborGWAS/inst/doc/rNeighborGWAS.Rmd | 270 +-- rNeighborGWAS-1.2.3/rNeighborGWAS/inst/doc/rNeighborGWAS.html | 808 +++------- rNeighborGWAS-1.2.3/rNeighborGWAS/man/nei_lm.Rd | 5 rNeighborGWAS-1.2.3/rNeighborGWAS/man/nei_lmm.Rd | 5 rNeighborGWAS-1.2.3/rNeighborGWAS/man/rNeighborGWAS-package.Rd | 4 rNeighborGWAS-1.2.3/rNeighborGWAS/tests/testthat/test-neiGWAS.R |only rNeighborGWAS-1.2.3/rNeighborGWAS/tests/testthat/test-nei_lm.R | 117 - rNeighborGWAS-1.2.3/rNeighborGWAS/tests/testthat/test-nei_lmm.R | 116 - rNeighborGWAS-1.2.3/rNeighborGWAS/vignettes/rNeighborGWAS.Rmd | 270 +-- 18 files changed, 1156 insertions(+), 1175 deletions(-)
Title: Structure for Organizing Monte Carlo Simulation Designs
Description: Provides tools to help safely and efficiently organize Monte Carlo simulations in R.
The package controls the structure and back-end of Monte Carlo simulations
by utilizing a general generate-analyse-summarise strategy. The functions provided control
common simulation issues such as re-simulating non-convergent results, support parallel
back-end and MPI distributed computations, save and restore temporary files,
aggregate results across independent nodes, and provide native support for debugging.
For a pedagogical introduction to the package refer to
Sigal and Chalmers (2016) <doi:10.1080/10691898.2016.1246953>, and for an in-depth overview of
the package and its design philosophy see Chalmers and Adkins (2020) <doi:10.20982/tqmp.16.4.p248>.
Author: Phil Chalmers [aut, cre] (<https://orcid.org/0000-0001-5332-2810>),
Matthew Sigal [ctb],
Ogreden Oguzhan [ctb]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>
Diff between SimDesign versions 2.2 dated 2020-11-07 and 2.3 dated 2021-04-07
DESCRIPTION | 6 MD5 | 36 ++--- R/SimClean.R | 12 - R/SimExtract.R | 1 R/reSummarise.R | 126 ++++++++++++++---- R/rejectionSampling.R | 273 ++++++++++++++++++++++++--------------- R/rtruncate.R | 68 +++++---- R/runSimulation.R | 1 R/util.R | 2 build/partial.rdb |binary inst/doc/Catch_errors.html | 16 +- inst/doc/Fixed_obj_fun.html | 10 - inst/doc/Parallel-computing.html | 4 inst/doc/Saving-results.html | 28 ++-- inst/doc/SimDesign-intro.html | 20 +- man/SimClean.Rd | 11 - man/reSummarise.Rd | 57 +++++++- man/rejectionSampling.Rd | 213 ++++++++++++++++++------------ man/rtruncate.Rd | 61 ++++---- 19 files changed, 593 insertions(+), 352 deletions(-)
Title: Solving Ordinary Differential Equations to Understand
Luminescence
Description: A collection of functions to simulate luminescence signals in quartz and Al2O3 based on published models.
Author: Johannes Friedrich [aut, trl, cre]
(<https://orcid.org/0000-0002-0805-9547>),
Sebastian Kreutzer [aut, ths] (<https://orcid.org/0000-0002-0734-2199>),
Christoph Schmidt [aut, ths] (<https://orcid.org/0000-0002-2309-3209>)
Maintainer: Johannes Friedrich <johannes.friedrich@posteo.de>
Diff between RLumModel versions 0.2.7 dated 2020-09-04 and 0.2.8 dated 2021-04-07
RLumModel-0.2.7/RLumModel/vignettes/elsevier-harvard.csl |only RLumModel-0.2.8/RLumModel/DESCRIPTION | 15 RLumModel-0.2.8/RLumModel/MD5 | 73 RLumModel-0.2.8/RLumModel/NEWS.md | 190 - RLumModel-0.2.8/RLumModel/R/RLumModel-package.R | 21 RLumModel-0.2.8/RLumModel/R/translate_sequence.R | 103 RLumModel-0.2.8/RLumModel/README.md | 20 RLumModel-0.2.8/RLumModel/build/vignette.rds |binary RLumModel-0.2.8/RLumModel/inst/doc/RLumModel_-_Getting_started_with_RLumModel.html | 1069 +++++----- RLumModel-0.2.8/RLumModel/inst/doc/RLumModel_-_Getting_started_with_RLumModel.html.asis | 2 RLumModel-0.2.8/RLumModel/inst/doc/RLumModel_-_Simulating_luminescence_in_Al2O3.html | 567 +---- RLumModel-0.2.8/RLumModel/inst/doc/RLumModel_-_Using_own_parameter_sets.html | 541 +---- RLumModel-0.2.8/RLumModel/man/RLumModel-package.Rd | 25 RLumModel-0.2.8/RLumModel/man/figures/README-unnamed-chunk-4-1.png |binary RLumModel-0.2.8/RLumModel/man/figures/RLumModel_logo.png |only RLumModel-0.2.8/RLumModel/man/figures/RLumModel_logo.svg |only RLumModel-0.2.8/RLumModel/man/model_LuminescenceSignals.Rd | 2 RLumModel-0.2.8/RLumModel/man/read_SEQ2R.Rd | 2 RLumModel-0.2.8/RLumModel/tests/testthat/test-create_DRT.sequence.R | 54 RLumModel-0.2.8/RLumModel/tests/testthat/test-create_SAR.sequence.R | 51 RLumModel-0.2.8/RLumModel/tests/testthat/test-model_LuminescenceSignals.R | 136 - RLumModel-0.2.8/RLumModel/tests/testthat/test-own-parameter-sets.R | 53 RLumModel-0.2.8/RLumModel/tests/testthat/test-read_SEQ2R.R | 23 RLumModel-0.2.8/RLumModel/tests/testthat/test-set_pars.R | 42 RLumModel-0.2.8/RLumModel/tests/testthat/test-simulate_CW_OSL.R | 94 RLumModel-0.2.8/RLumModel/tests/testthat/test-simulate_LM_OSL.R | 109 - RLumModel-0.2.8/RLumModel/tests/testthat/test-simulate_RF.R | 190 - RLumModel-0.2.8/RLumModel/tests/testthat/test-simulate_RF_and_heating.R | 183 - RLumModel-0.2.8/RLumModel/tests/testthat/test-simulate_TL.R | 61 RLumModel-0.2.8/RLumModel/tests/testthat/test-simulate_heating.R | 51 RLumModel-0.2.8/RLumModel/tests/testthat/test-simulate_illumination.R | 88 RLumModel-0.2.8/RLumModel/tests/testthat/test-simulate_irradiation.R | 124 - RLumModel-0.2.8/RLumModel/tests/testthat/test-simulate_pause.R | 53 RLumModel-0.2.8/RLumModel/tests/testthat/test-translate_sequence.R | 29 RLumModel-0.2.8/RLumModel/vignettes/RLumModel.bib | 6 RLumModel-0.2.8/RLumModel/vignettes/RLumModel_-_Getting_started_with_RLumModel.Rmd | 34 RLumModel-0.2.8/RLumModel/vignettes/RLumModel_-_Getting_started_with_RLumModel.html.asis | 2 RLumModel-0.2.8/RLumModel/vignettes/RLumModel_-_Simulating_luminescence_in_Al2O3.Rmd | 7 RLumModel-0.2.8/RLumModel/vignettes/RLumModel_-_Using_own_parameter_sets.Rmd | 7 39 files changed, 1924 insertions(+), 2103 deletions(-)
Title: Enterprise Streamlined 'Shiny' Application Framework
Description: An enterprise-targeted scalable and UI-standardized 'shiny' framework
including a variety of developer convenience functions with the goal of both
streamlining robust application development while assisting with creating a
consistent user experience regardless of application or developer.
Author: Constance Brett [aut, cre],
Isaac Neuhaus [aut] (canvasXpress JavaScript Library Maintainer),
Ger Inberg [ctb],
Bristol-Meyers Squibb (BMS) [cph]
Maintainer: Constance Brett <connie@aggregate-genius.com>
Diff between periscope versions 0.6.2 dated 2021-03-22 and 0.6.3 dated 2021-04-07
DESCRIPTION | 11 +- MD5 | 40 +++++----- NEWS.md | 6 + R/fw_helpers_external.R | 12 ++- R/fw_helpers_internal.R | 2 R/generate_template.R | 4 + R/periscope.R | 9 ++ build/vignette.rds |binary inst/doc/downloadFile-module.html | 4 - inst/doc/downloadablePlot-module.html | 4 - inst/doc/downloadableTable-module.html | 4 - inst/doc/new-application.html | 4 - inst/fw_templ/p_example/server_local.R | 3 inst/fw_templ/p_example/server_local_no_left.R | 3 inst/fw_templ/p_example/server_local_plus.R | 17 ++-- inst/fw_templ/p_example/server_local_plus_no_left.R | 9 +- tests/testthat/sample_app/program/server_local.R | 3 tests/testthat/sample_app_both_sidebar/program/server_local.R | 17 ++-- tests/testthat/sample_app_no_sidebar/program/server_local.R | 3 tests/testthat/sample_app_no_sidebar_no_resetbutton/program/server_local.R | 3 tests/testthat/sample_app_r_sidebar/program/server_local.R | 3 21 files changed, 90 insertions(+), 71 deletions(-)
Title: Geometric Median, k-Medians Clustering and Robust Median PCA
Description: Fast algorithms for robust estimation with large samples of multivariate observations. Estimation of the geometric median, robust k-Gmedian clustering, and robust PCA based on the Gmedian covariation matrix.
Author: Herve Cardot
Maintainer: Herve Cardot <herve.cardot@u-bourgogne.fr>
Diff between Gmedian versions 1.2.5 dated 2020-03-02 and 1.2.6 dated 2021-04-07
DESCRIPTION | 12 ++++++------ MD5 | 16 ++++++++-------- NEWS | 4 ++++ build/partial.rdb |binary man/Gmedian.Rd | 8 ++++---- man/GmedianCov.Rd | 2 +- man/Weiszfeld.Rd | 6 +++--- man/WeiszfeldCov.Rd | 2 +- src/Weiszfeld.cpp | 15 +++++++++++---- 9 files changed, 38 insertions(+), 27 deletions(-)
Title: Nested and Crossed Block Designs for Factorial and Unstructured
Treatment Sets
Description: Constructs treatment and block designs for linear treatment models
with crossed or nested block factors. The treatment design can be any feasible
linear model and the block design can be any feasible combination of crossed or
nested block factors. The block design is a sum of one or more block factors
and the block design is optimized sequentially with the levels of each successive
block factor optimized conditional on all previously optimized block factors.
D-optimality is used throughout except for square or rectangular lattice block designs
which are constructed algebraically using mutually orthogonal Latin squares.
Crossed block designs with interaction effects are optimized using a weighting scheme
which allows for differential weighting of first and second-order block effects.
Outputs include a table showing the allocation of treatments to blocks and tables showing
the achieved D-efficiency factors for each block and treatment design.
Edmondson, R.N. Multi-level Block Designs for Comparative Experiments.
JABES 25, 500–522 (2020) <doi:10.1007/s13253-020-00416-0>.
Author: R. N. Edmondson.
Maintainer: Rodney Edmondson <rodney.edmondson@gmail.com>
Diff between blocksdesign versions 4.8 dated 2021-02-26 and 4.9 dated 2021-04-07
DESCRIPTION | 10 - MD5 | 16 + NAMESPACE | 1 R/blocks.R | 42 ++-- R/design.R | 455 ++++++++++++++--------------------------------------- R/fraction.R |only R/nestedBlocks.R | 3 build/vignette.rds |binary man/design.Rd | 75 +++----- man/fraction.Rd |only 10 files changed, 193 insertions(+), 409 deletions(-)
Title: Bayesian Hierarchical Models for Basket Trials
Description: Provides functions for the evaluation of basket
trial designs with binary endpoints. Operating characteristics of a
basket trial design are assessed by simulating trial data according to
scenarios, analyzing the data with Bayesian hierarchical models (BHMs), and
assessing decision probabilities on stratum and trial-level based on Go / No-go decision making.
The package is build for high flexibility regarding decision rules,
number of interim analyses, number of strata, and recruitment.
The BHMs proposed by
Berry et al. (2013) <doi:10.1177/1740774513497539>
and Neuenschwander et al. (2016) <doi:10.1002/pst.1730>,
as well as a model that combines both approaches are implemented.
Functions are provided to implement Bayesian decision rules as for example
proposed by Fisch et al. (2015) <doi:10.1177/2168479014533970>.
In addition, posterior point estimates (mean/median) and credible intervals
for response rates and some model parameters can be calculated.
For simulated trial data, bias and mean squared errors of posterior
point estimates for response rates can be provided.
Author: Stephan Wojciekowski [aut, cre]
Maintainer: Stephan Wojciekowski <stephan.wojciekowski@boehringer-ingelheim.com>
Diff between bhmbasket versions 0.9.1 dated 2021-02-15 and 0.9.2 dated 2021-04-07
DESCRIPTION | 11 ++++++----- MD5 | 14 +++++++------- NEWS.md | 10 ++++++++++ R/AnalysisFunctions.R | 25 ++++++++++++++++++------- R/OCFunctions.R | 13 +++++-------- inst/doc/reproduceExNex.html | 4 ++-- man/loadAnalyses.Rd | 9 +++++++-- man/performAnalyses.Rd | 16 +++++++++++++--- 8 files changed, 68 insertions(+), 34 deletions(-)
Title: Normalised Prediction Distribution Errors for Nonlinear
Mixed-Effect Models
Description: Provides routines to compute normalised prediction distribution errors, a metric designed to evaluate non-linear mixed effect models such as those used in pharmacokinetics and pharmacodynamics. Documentation about 'npde' is provided by a comprehensive user guide on the github repository (<https://github.com/ecomets/npde30/blob/main/userguide_npde_3.0.pdf>), and references concerning the methods include the papers by Brendel et al. (2006, <doi:10.1007/s11095-006-9067-5>; 2010, <doi:10.1007/s10928-009-9143-7>), Comets et al. (2008, <doi:10.1016/j.cmpb.2007.12.002> ; 2010, <http://journal-sfds.fr/article/view/45>), and Nguyen et al. (2012, <doi:10.1007/s10928-012-9264-2>). See 'citation("npde")' for details.
Author: Emmanuelle Comets [aut, cre] (<https://orcid.org/0000-0002-9150-9886>),
Karl Brendel [ctb],
Thi Huyen Tram Nguyen [ctb],
Romain Leroux [ctb],
France Mentre [ctb]
Maintainer: Emmanuelle Comets <emmanuelle.comets@inserm.fr>
Diff between npde versions 3.0 dated 2021-02-25 and 3.1 dated 2021-04-07
CHANGES | 8 ++++++ DESCRIPTION | 10 +++---- MD5 | 24 +++++++++---------- R/aaa_generics.R | 1 R/compute_pd.R | 3 ++ R/mainNpde.R | 54 +++++++++++++++++++------------------------ R/npdeControl.R | 4 ++- R/plotNpde-auxScatterPlot.R | 23 ++++++++---------- R/plotNpde-methods.R | 19 +++++++++++++-- R/plotNpde-plotFunctions.R | 10 ++++--- R/plotNpde-scatterplot.R | 13 +++++++--- man/npde.plot.scatterplot.Rd | 4 ++- man/npde.plot.select.Rd | 8 +++--- 13 files changed, 108 insertions(+), 73 deletions(-)
Title: White Matter Normalization for Magnetic Resonance Images using
WhiteStripe
Description: Shinohara (2014) <doi:10.1016/j.nicl.2014.08.008>
introduced 'WhiteStripe', an intensity-based normalization of T1
and T2 images, where normal
appearing white matter performs well, but requires segmentation.
This method performs white matter mean and standard deviation
estimates on data that has been rigidly-registered to the 'MNI'
template and uses histogram-based methods.
Author: R. Taki Shinohara [aut],
John Muschelli [aut, cre] (<https://orcid.org/0000-0001-6469-1750>)
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between WhiteStripe versions 2.3.2 dated 2019-10-01 and 2.4.0 dated 2021-04-07
DESCRIPTION | 31 ++-- MD5 | 28 +-- NEWS.md | 5 R/whitestripe_ind.R | 11 + build/vignette.rds |binary inst/doc/Running_WhiteStripe.R | 24 +-- inst/doc/Running_WhiteStripe.html | 293 ++++++++------------------------------ man/get.first.mode.Rd | 3 man/get.last.mode.Rd | 3 man/s.hist.Rd | 4 man/smooth_hist.Rd | 10 + man/t1.voi.hist.Rd | 4 man/t2.voi.hist.Rd | 4 man/whitestripe.Rd | 16 +- man/xvals.Rd | 4 15 files changed, 163 insertions(+), 277 deletions(-)
Title: Steve's Toy Data for Teaching About a Variety of Methodological,
Social, and Political Topics
Description: This is an R package for all my toy data. Its main uses are for teaching.
My students, and academics like me who teach the same topics I teach, should find
this useful if their teaching workflow is also built around the R programming
language. The applications are multiple but mostly cluster on topics of statistical
methodology, international relations, and political economy.
Author: Steve Miller [aut, cre] (<https://orcid.org/0000-0003-4072-6263>)
Maintainer: Steve Miller <steven.v.miller@gmail.com>
Diff between stevedata versions 0.3.0 dated 2021-02-27 and 0.3.1 dated 2021-04-07
DESCRIPTION | 7 ++++--- MD5 | 14 +++++++------- R/rd-election_turnout.R | 11 ++++++++--- R/rd-min_wage.R | 2 +- data/election_turnout.rda |binary inst/doc/stevedata-description.html | 9 ++++++++- man/election_turnout.Rd | 11 ++++++++--- man/min_wage.Rd | 2 +- 8 files changed, 37 insertions(+), 19 deletions(-)
Title: Tidy Tools for Paleoenvironmental Archives
Description: Provides a set of functions with a common framework for age-depth model management,
stratigraphic visualization, and common statistical transformations. The focus of the
package is stratigraphic visualization, for which 'ggplot2' components are provided
to reproduce the scales, geometries, facets, and theme elements commonly used in
publication-quality stratigraphic diagrams. Helpers are also provided to reproduce
the exploratory statistical summaries that are frequently included on
stratigraphic diagrams.
Author: Dewey Dunnington [aut, cre, cph]
(<https://orcid.org/0000-0002-9415-4582>)
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>
Diff between tidypaleo versions 0.1.0 dated 2021-03-31 and 0.1.1 dated 2021-04-07
DESCRIPTION | 6 MD5 | 15 NEWS.md |only README.md | 10 build/partial.rdb |binary inst/doc/age_depth.html | 297 ++---------- inst/doc/nested_analysis.html | 613 +++++++++----------------- inst/doc/strat_diagrams.html | 779 ++++++++++++---------------------- tests/testthat/test-age_depth_model.R | 5 9 files changed, 575 insertions(+), 1150 deletions(-)
Title: R Interface to API 'vk.com'
Description: Load data from vk.com api about your communiti users and views,
ads performance, post on user wall and etc. For more information
see API Documentation <https://vk.com/dev/first_guide>.
Author: Alexey Seleznev
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between rvkstat versions 3.0.0 dated 2021-01-15 and 3.0.1 dated 2021-04-07
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 6 ++++++ R/vkAuth.R | 2 +- R/vkGetAds.R | 7 ++++--- README.md | 3 +++ build/partial.rdb |binary 7 files changed, 24 insertions(+), 14 deletions(-)
Title: Risk Tool Library
Description: Collection of functions and metadata to complement core packages
in Finance and Commodities, including futures expiry tables and <https://www.morningstar.com/products/commodities-and-energy>
API functions. See <https://github.com/risktoollib/RTL>.
Author: Philippe Cote [aut, cre],
Nima Safaian [aut]
Maintainer: Philippe Cote <pcote@ualberta.ca>
Diff between RTL versions 0.1.5 dated 2020-11-11 and 0.1.6 dated 2021-04-07
RTL-0.1.5/RTL/tests |only RTL-0.1.6/RTL/DESCRIPTION | 15 +-- RTL-0.1.6/RTL/MD5 | 103 ++++++++++----------- RTL-0.1.6/RTL/NAMESPACE | 2 RTL-0.1.6/RTL/NEWS.md | 22 ++++ RTL-0.1.6/RTL/R/chart_eia_sd.R | 6 - RTL-0.1.6/RTL/R/chart_pairs.R | 1 RTL-0.1.6/RTL/R/chart_spreads.R | 139 ++++++++++++++--------------- RTL-0.1.6/RTL/R/chart_zscore.R | 33 ++++-- RTL-0.1.6/RTL/R/eia2tidy.R | 6 - RTL-0.1.6/RTL/R/genscape.R |only RTL-0.1.6/RTL/R/globals.R | 2 RTL-0.1.6/RTL/R/morningstar.R | 66 ++++++++++--- RTL-0.1.6/RTL/R/promptBeta.R | 58 ++++++------ RTL-0.1.6/RTL/R/returns.R | 20 ++-- RTL-0.1.6/RTL/R/simGBM.R | 57 ++++++----- RTL-0.1.6/RTL/README.md | 1 RTL-0.1.6/RTL/data/cancrudeassays.rda |binary RTL-0.1.6/RTL/data/cancrudeassayssum.rda |binary RTL-0.1.6/RTL/data/cancrudeprices.rda |binary RTL-0.1.6/RTL/data/crudeassaysBP.rda |binary RTL-0.1.6/RTL/data/crudeassaysXOM.rda |binary RTL-0.1.6/RTL/data/crudepipelines.rda |binary RTL-0.1.6/RTL/data/crudes.rda |binary RTL-0.1.6/RTL/data/df_fut.rda |binary RTL-0.1.6/RTL/data/dflong.rda |binary RTL-0.1.6/RTL/data/dfwide.rda |binary RTL-0.1.6/RTL/data/eiaStocks.rda |binary RTL-0.1.6/RTL/data/eiaStorageCap.rda |binary RTL-0.1.6/RTL/data/fizdiffs.rda |binary RTL-0.1.6/RTL/data/lngterminals.rda |binary RTL-0.1.6/RTL/data/nghubs.rda |binary RTL-0.1.6/RTL/data/ngpipelines.rda |binary RTL-0.1.6/RTL/data/ngstorage.rda |binary RTL-0.1.6/RTL/data/planets.rda |binary RTL-0.1.6/RTL/data/productspipelines.rda |binary RTL-0.1.6/RTL/data/productsterminals.rda |binary RTL-0.1.6/RTL/data/refineries.rda |binary RTL-0.1.6/RTL/data/tradeCycle.rda |binary RTL-0.1.6/RTL/data/tradeprocess.rda |binary RTL-0.1.6/RTL/data/usSwapCurves.rda |binary RTL-0.1.6/RTL/data/usSwapCurvesPar.rda |binary RTL-0.1.6/RTL/data/usSwapIR.rda |binary RTL-0.1.6/RTL/data/usSwapIRdef.rda |binary RTL-0.1.6/RTL/man/chart_eia_sd.Rd | 2 RTL-0.1.6/RTL/man/chart_pairs.Rd | 1 RTL-0.1.6/RTL/man/chart_spreads.Rd | 8 - RTL-0.1.6/RTL/man/chart_zscore.Rd | 4 RTL-0.1.6/RTL/man/eia2tidy.Rd | 4 RTL-0.1.6/RTL/man/getGenscapePipeOil.Rd |only RTL-0.1.6/RTL/man/getGenscapeStorageOil.Rd |only RTL-0.1.6/RTL/man/getPrice.Rd | 6 - RTL-0.1.6/RTL/man/promptBeta.Rd | 21 ++-- RTL-0.1.6/RTL/man/returns.Rd | 4 54 files changed, 336 insertions(+), 245 deletions(-)
Title: Testing Workbench for Precision-Recall Curves
Description: A testing workbench for evaluating precision-recall curves under various conditions.
Author: Takaya Saito [aut, cre],
Marc Rehmsmeier [aut]
Maintainer: Takaya Saito <takaya.saito@outlook.com>
Diff between prcbench versions 0.9.1 dated 2021-01-07 and 1.0.1 dated 2021-04-07
DESCRIPTION | 14 ++--- MD5 | 17 +++--- NEWS.md | 24 ++++++--- README.md | 118 +++++++++++++++++++++++---------------------- build/vignette.rds |binary inst/CITATION | 4 - inst/doc/introduction.Rmd | 2 inst/doc/introduction.html | 41 +++++++++------ man/figures/logo.svg |only vignettes/introduction.Rmd | 2 10 files changed, 121 insertions(+), 101 deletions(-)
Title: Building Augmented Data to Run Multi-State Models with 'msm'
Package
Description: A fast and general method for restructuring classical longitudinal data into
augmented ones. The reason for this is to facilitate the modeling of longitudinal data under
a multi-state framework using the 'msm' package.
Author: Francesco Grossetti [aut, cre]
(<https://orcid.org/0000-0002-5130-7745>)
Maintainer: Francesco Grossetti <francesco.grossetti@unibocconi.it>
Diff between msmtools versions 1.3 dated 2017-06-08 and 2.0.0 dated 2021-04-07
DESCRIPTION | 19 - MD5 | 36 +- NAMESPACE | 28 + NEWS.md | 65 +++ R/augment.R | 10 R/onAttach.R | 4 R/prevplot.R | 362 ++++++-------------- R/survplot.R | 382 ++++++++-------------- README.md | 21 - build/vignette.rds |binary inst/doc/msmtools.Rmd | 268 ++++----------- inst/doc/msmtools.html | 848 +++++++++++++++++++++++++------------------------ man/augment.Rd | 29 + man/hosp.Rd | 6 man/msmtools.Rd | 1 man/polish.Rd | 13 man/prevplot.Rd | 85 ---- man/survplot.Rd | 190 ++-------- vignettes/msmtools.Rmd | 268 ++++----------- 19 files changed, 1090 insertions(+), 1545 deletions(-)
Title: Elliptical Symmetry Tests
Description: Given the omnipresence of the assumption of elliptical symmetry, it is essential to be able to test whether that assumption actually holds true or not for the data
at hand. This package provides several statistical tests for elliptical symmetry that are described in Babic et al. (2021) <arXiv:2011.12560v2>.
Author: Sladana Babic [aut] (<https://orcid.org/0000-0001-8076-4665>),
Marko Palangetic [aut, cre] (<https://orcid.org/0000-0002-6366-0634>),
Christophe Ley [aut] (<https://orcid.org/0000-0002-2290-8437>)
Maintainer: Marko Palangetic <marko.palangetic@ugent.be>
Diff between ellipticalsymmetry versions 0.1 dated 2020-11-30 and 0.1.2 dated 2021-04-07
DESCRIPTION | 29 +++--- MD5 | 32 +++--- NAMESPACE | 1 R/AuxilaryFunctions.R | 56 ++++++++---- R/HufferPark.R | 180 ++++++++++++++++++++++++--------------- R/KoltchinskiiSakhanenko.R | 109 +++++++++++++++-------- R/MPQ.R | 39 ++++---- R/PseudoGaussian.R | 70 ++++++++------- R/Schott.R | 34 +++---- R/SkewOptimal.R | 115 +++++++++++++----------- R/SphericalHarmonics-OrthBasis.R | 122 ++++++++++++++------------ man/HufferPark.Rd | 32 +++--- man/KoltchinskiiSakhanenko.Rd | 12 +- man/MPQ.Rd | 8 - man/PseudoGaussian.Rd | 11 +- man/Schott.Rd | 4 man/SkewOptimal.Rd | 34 +++---- 17 files changed, 510 insertions(+), 378 deletions(-)
More information about ellipticalsymmetry at CRAN
Permanent link
Title: 'caret' Applications for Spatial-Temporal Models
Description: Supporting functionality to run 'caret' with spatial or spatial-temporal data. 'caret' is a frequently used package for model training and prediction using machine learning. This package includes functions to improve spatial-temporal modelling tasks using 'caret'. It prepares data for Leave-Location-Out and Leave-Time-Out cross-validation which are target-oriented validation strategies for spatial-temporal models. To decrease overfitting and improve model performances, the package implements a forward feature selection that selects suitable predictor variables in view to their contribution to the target-oriented performance. CAST further includes functionality to estimate the (spatial) area of applicability of prediction models by analysing the similarity between new data and training data.
Author: Hanna Meyer [cre, aut],
Chris Reudenbach [ctb],
Marvin Ludwig [ctb],
Thomas Nauss [ctb],
Edzer Pebesma [ctb]
Maintainer: Hanna Meyer <hanna.meyer@uni-muenster.de>
Diff between CAST versions 0.5.0 dated 2021-02-19 and 0.5.1 dated 2021-04-07
DESCRIPTION | 10 MD5 | 24 - NEWS.md | 3 R/CreateSpacetimeFolds.R | 11 R/calibrate_aoa.R | 4 R/ffs.R | 3 build/partial.rdb |binary inst/doc/AOA-tutorial.Rmd | 2 inst/doc/AOA-tutorial.html | 6 inst/doc/CAST-intro.html | 1016 +++++++++++++++++++++++++------------------- man/CreateSpacetimeFolds.Rd | 11 man/ffs.Rd | 3 vignettes/AOA-tutorial.Rmd | 2 13 files changed, 626 insertions(+), 469 deletions(-)
Title: Raster Time Series Visualization
Description: A lightweight 'R' package to visualize large raster time series, building on a fast temporal interpolation core.
Author: Johannes Mast [aut, cre] (<https://orcid.org/0000-0001-6595-5834>),
Jakob Schwalb-Willmann [aut] (<https://orcid.org/0000-0003-2665-1509>)
Maintainer: Johannes Mast <johannes.mast@stud-mail.uni-wuerzburg.de>
Diff between rtsVis versions 0.0.1 dated 2021-02-24 and 0.0.2 dated 2021-04-07
DESCRIPTION | 8 - MD5 | 18 +-- NEWS.md | 4 R/ts_add_positions_to_frames.R | 10 - R/ts_fill_na.R | 31 ++++- R/ts_flow_frames.R | 6 - README.md | 203 ++++++++++++++++++++++++++++++++------ man/ts_add_positions_to_frames.Rd | 10 - man/ts_fill_na.Rd | 4 man/ts_flow_frames.Rd | 6 - 10 files changed, 233 insertions(+), 67 deletions(-)
Title: Data from the 'Access to Opportunities Project (AOP)'
Description: Download data from the 'Access to Opportunities Project (AOP)'. The
'aopdata' package brings annual estimates of access to employment,
health and education services by transport mode, as well as data
on the spatial distribution of population, schools and health-care
facilities at a fine spatial resolution for all cities included in
the study. More info on the 'AOP' website <https://www.ipea.gov.br/acessooportunidades/en/>.
Author: Rafael H. M. Pereira [aut, cre]
(<https://orcid.org/0000-0003-2125-7465>),
Daniel Herszenhut [aut] (<https://orcid.org/0000-0001-8066-1105>),
Marcus Saraiva [aut] (<https://orcid.org/0000-0001-6218-2338>),
Ipea - Institue for Applied Economic Research [cph, fnd]
Maintainer: Rafael H. M. Pereira <rafa.pereira.br@gmail.com>
Diff between aopdata versions 0.2.0 dated 2021-03-31 and 0.2.1 dated 2021-04-07
aopdata-0.2.0/aopdata/man/rm_accent.Rd |only aopdata-0.2.1/aopdata/DESCRIPTION | 8 aopdata-0.2.1/aopdata/MD5 | 51 - aopdata-0.2.1/aopdata/NAMESPACE | 1 aopdata-0.2.1/aopdata/NEWS.md | 13 aopdata-0.2.1/aopdata/R/read_access.R | 18 aopdata-0.2.1/aopdata/R/read_grid.R | 2 aopdata-0.2.1/aopdata/R/read_population.R | 4 aopdata-0.2.1/aopdata/R/utils.R | 69 - aopdata-0.2.1/aopdata/inst/doc/access_inequality.html | 617 ---------------- aopdata-0.2.1/aopdata/inst/doc/access_maps.html | 616 --------------- aopdata-0.2.1/aopdata/inst/doc/intro_to_aopdata.html | 4 aopdata-0.2.1/aopdata/inst/doc/landuse_maps.html | 231 ----- aopdata-0.2.1/aopdata/man/aop_merge.Rd | 1 aopdata-0.2.1/aopdata/man/aop_spatial_join.Rd | 1 aopdata-0.2.1/aopdata/man/check_connection.Rd | 1 aopdata-0.2.1/aopdata/man/download_data.Rd | 1 aopdata-0.2.1/aopdata/man/load_data.Rd | 1 aopdata-0.2.1/aopdata/man/read_access.Rd | 6 aopdata-0.2.1/aopdata/man/read_grid.Rd | 2 aopdata-0.2.1/aopdata/man/read_population.Rd | 4 aopdata-0.2.1/aopdata/man/select_city_input.Rd | 1 aopdata-0.2.1/aopdata/man/select_metadata.Rd | 1 aopdata-0.2.1/aopdata/man/select_mode_input.Rd | 1 aopdata-0.2.1/aopdata/man/select_year_input.Rd | 1 aopdata-0.2.1/aopdata/tests/testthat/test_read_access.R | 33 aopdata-0.2.1/aopdata/tests/testthat/test_read_grid.R | 7 27 files changed, 122 insertions(+), 1573 deletions(-)
Title: Flags Acute Kidney Injury (AKI)
Description: Flagger to detect acute kidney injury (AKI) in a patient dataset.
Author: Ishan Saran [aut, cre],
Shivam Saran [aut],
Rishi Saran [aut],
Aditya Biswas [ctb],
Sankee Mummareddy [ctb],
Yu Yamamoto [ctb],
Francis Perry Wilson [ctb, ths]
Maintainer: Ishan Saran <ishansaran65@gmail.com>
Diff between akiFlagger versions 0.2.0 dated 2021-03-14 and 0.3.0 dated 2021-04-07
DESCRIPTION | 10 +++++----- MD5 | 20 ++++++++++++++------ NAMESPACE | 1 + R/GUI.R |only R/data.R | 20 ++++++++++++++++++-- R/returnAKIpatients.R | 27 ++++++++++++++++----------- data/toy.demo.csv |only data/toy.demo.rda |only data/toy.rda |binary inst |only man/runGUI.Rd |only man/toy.Rd | 2 -- man/toy.demo.Rd |only 13 files changed, 54 insertions(+), 26 deletions(-)
Title: Zooarchaeological Analysis with Log-Ratios
Description: Includes functions and reference data to
generate and manipulate log-ratios (also known as log size index (LSI)
values) from measurements obtained on zooarchaeological material. Log
ratios are used to compare the relative (rather than the absolute)
dimensions of animals from archaeological contexts
(Meadow 1999, ISBN: 9783896463883).
zoolog is also able to seamlessly integrate data and references
with heterogeneous nomenclature, which is internally managed by a
zoolog thesaurus.
A preliminary version of the zoolog methods was first used by
Trentacoste, Nieto-Espinet, and Valenzuela-Lamas (2018)
<doi:10.1371/journal.pone.0208109>.
Author: Jose M Pozo [aut, cre] (<https://orcid.org/0000-0002-0759-3510>),
Silvia Valenzuela-Lamas [aut] (<https://orcid.org/0000-0001-9886-0372>),
Angela Trentacoste [aut] (<https://orcid.org/0000-0001-7096-5252>),
Ariadna Nieto-Espinet [aut] (<https://orcid.org/0000-0003-2567-1735>),
Silvia Guimarães Chiarelli [aut]
(<https://orcid.org/0000-0002-3778-3315>)
Maintainer: Jose M Pozo <josmpozo@gmail.com>
Diff between zoolog versions 0.2.1 dated 2021-02-17 and 0.3.0 dated 2021-04-07
DESCRIPTION | 8 MD5 | 92 ++++--- NEWS.md | 16 + R/CondenseLogs.R | 4 R/Data2Reference.R | 4 R/ReadCommentLines.R |only R/ThesaurusReaderWriter.R | 27 -- R/references.R | 107 +++----- README.md | 17 - build/partial.rdb |binary data/reference.rda |binary data/referenceSets.rda |binary data/referencesDatabase.rda |binary data/zoologThesaurus.rda |binary inst/REFERENCES.bib | 65 ++++- inst/doc/index.R | 8 inst/doc/index.Rmd | 38 +-- inst/doc/index.html | 247 ++++++++++++++------ inst/extdata/dataValenzuelaLamas2008.csv.gz |binary inst/extdata/elementThesaurus.csv | 50 ++-- inst/extdata/measureThesaurus.csv | 16 - inst/extdata/referenceCattle_Basel.csv | 126 +++++----- inst/extdata/referenceCattle_Degerbol.csv | 121 +++++---- inst/extdata/referenceCattle_Johnstone.csv | 72 +++-- inst/extdata/referenceCattle_Nieto.csv | 158 ++++++------- inst/extdata/referenceDama_Haifa.csv |only inst/extdata/referenceEquid_Haifa.csv |only inst/extdata/referenceEquid_Johnstone.csv |only inst/extdata/referenceGazelle_Haifa.csv |only inst/extdata/referenceGoat_Basel.csv | 94 +++---- inst/extdata/referenceGoat_Clutton.csv | 140 +++++------ inst/extdata/referenceGoat_Uerpmann.csv | 128 +++++----- inst/extdata/referencePig_Albarella.csv | 106 ++++---- inst/extdata/referencePig_Basel.csv | 106 ++++---- inst/extdata/referencePig_Hongo.csv | 221 +++++++++--------- inst/extdata/referencePig_Payne.csv | 92 +++---- inst/extdata/referenceRabbit_Nottingham.csv |only inst/extdata/referenceRedDeer_Basel.csv | 52 ++-- inst/extdata/referenceSets.csv | 10 inst/extdata/referenceSheep_Basel.csv | 96 ++++--- inst/extdata/referenceSheep_Clutton.csv | 162 ++++++------- inst/extdata/referenceSheep_Davis.csv | 68 ++--- inst/extdata/referenceSheep_Uerpmann.csv | 124 +++++----- inst/extdata/referencesDatabase.csv | 40 +-- inst/extdata/taxonThesaurus.csv | 34 +- man/figures/boxplotDataOCLength-1.pdf |only man/figures/boxplotDataOCWidths-1.pdf |only man/figures/boxplotVerticalDataOCWidths-1.pdf |only man/figures/histogramDataOCWidths-1.pdf |only man/figures/histogramPerSiteAndColourTaxon-1.pdf |only man/figures/histogramPerTaxonAndSite-1.pdf |only man/referencesDatabase.Rd | 279 +++++++++++++++-------- vignettes/index.Rmd | 38 +-- 53 files changed, 1623 insertions(+), 1343 deletions(-)
Title: Virome Sequencing Analysis Result Browser
Description: Experiments in which highly complex virome sequencing data is generated are difficult to visualize and unpack for a person without programming experience.
After processing of the raw sequencing data by a next generation sequencing (NGS) processing pipeline the usual output consists of contiguous sequences (contigs) in fasta format and an annotation file linking the
contigs to a reference sequence. The virome analysis browser app imports an annotation file, a corresponding fasta file containing the annotated contigs and a alignment file in BAM format of the sequence reads aligned to the contigs.
It facilitates browsing of annotations in multiple files and allows users to select and export specific annotated sequences from the associated fasta files. Various
annotation quality thresholds can be set to filter contigs from the annotation files. Further inspection of selected contigs can be done in the form of automatic open
reading frame (ORF) detection. Separate contigs and/or separate ORFs can be downloaded in nucleotide or amino acid format for further analysis.
Author: David Nieuwenhuijse [aut, cre]
Maintainer: David Nieuwenhuijse <d.nieuwenhuijse@erasmusmc.nl>
Diff between viromeBrowser versions 1.0.0 dated 2019-08-21 and 1.1.0 dated 2021-04-07
viromeBrowser-1.0.0/viromeBrowser/inst/extdata |only viromeBrowser-1.1.0/viromeBrowser/DESCRIPTION | 17 viromeBrowser-1.1.0/viromeBrowser/MD5 | 53 - viromeBrowser-1.1.0/viromeBrowser/NEWS.md | 11 viromeBrowser-1.1.0/viromeBrowser/README.md | 38 viromeBrowser-1.1.0/viromeBrowser/build/vignette.rds |binary viromeBrowser-1.1.0/viromeBrowser/inst/app/global.R | 3 viromeBrowser-1.1.0/viromeBrowser/inst/app/heatmap_panel.R | 342 +++++-- viromeBrowser-1.1.0/viromeBrowser/inst/app/modules.R | 436 ++++++---- viromeBrowser-1.1.0/viromeBrowser/inst/app/seq_info.R | 50 - viromeBrowser-1.1.0/viromeBrowser/inst/app/server.R | 9 viromeBrowser-1.1.0/viromeBrowser/inst/app/ui.R | 87 + viromeBrowser-1.1.0/viromeBrowser/inst/doc/viromeBrowser.R | 23 viromeBrowser-1.1.0/viromeBrowser/inst/doc/viromeBrowser.Rmd | 46 - viromeBrowser-1.1.0/viromeBrowser/inst/doc/viromeBrowser.html | 129 +- viromeBrowser-1.1.0/viromeBrowser/man/viromeBrowser.Rd | 7 viromeBrowser-1.1.0/viromeBrowser/vignettes/image1.png |binary viromeBrowser-1.1.0/viromeBrowser/vignettes/image2.png |binary viromeBrowser-1.1.0/viromeBrowser/vignettes/image3.png |binary viromeBrowser-1.1.0/viromeBrowser/vignettes/image4.png |binary viromeBrowser-1.1.0/viromeBrowser/vignettes/image5.png |binary viromeBrowser-1.1.0/viromeBrowser/vignettes/image6.png |binary viromeBrowser-1.1.0/viromeBrowser/vignettes/image7.png |binary viromeBrowser-1.1.0/viromeBrowser/vignettes/viromeBrowser.Rmd | 46 - 24 files changed, 852 insertions(+), 445 deletions(-)
Title: Build and Raytrace 3D Scenes
Description: Render scenes using pathtracing. Build 3D scenes out of spheres, cubes, planes, disks, triangles, cones, curves, line segments, cylinders, ellipsoids, and 3D models in the 'Wavefront' OBJ file format or the PLY Polygon File Format. Supports several material types, textures, multicore rendering, and tone-mapping. Based on the "Ray Tracing in One Weekend" book series. Peter Shirley (2018) <https://raytracing.github.io>.
Author: Tyler Morgan-Wall [aut, cph, cre]
(<https://orcid.org/0000-0002-3131-3814>),
Syoyo Fujita [ctb, cph],
Melissa O'Neill [ctb, cph],
Vilya Harvey [ctb, cph]
Maintainer: Tyler Morgan-Wall <tylermw@gmail.com>
Diff between rayrender versions 0.21.1 dated 2021-04-03 and 0.21.2 dated 2021-04-07
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/miniply.cpp | 4 ++++ 3 files changed, 9 insertions(+), 5 deletions(-)
Title: Chart Generation for 'Microsoft Word' and 'Microsoft PowerPoint'
Documents
Description: Create native charts for 'Microsoft PowerPoint' and 'Microsoft Word' documents.
These can then be edited and annotated. Functions are provided to let users create charts, modify
and format their content. The chart's underlying data is automatically saved within the
'Word' document or 'PowerPoint' presentation. It extends package 'officer' that does
not contain any feature for 'Microsoft' native charts production.
Author: David Gohel [aut, cre],
ArData [cph],
YouGov [fnd],
David Camposeco [ctb] (chart_data_smooth function)
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between mschart versions 0.2.5 dated 2019-11-14 and 0.2.6 dated 2021-04-07
mschart-0.2.5/mschart/R/chart_data_color.R |only mschart-0.2.5/mschart/R/mschart.R |only mschart-0.2.5/mschart/R/ooml_code.R |only mschart-0.2.5/mschart/build |only mschart-0.2.5/mschart/inst/doc |only mschart-0.2.5/mschart/man/mschart.Rd |only mschart-0.2.5/mschart/man/ph_with_chart.Rd |only mschart-0.2.5/mschart/vignettes |only mschart-0.2.6/mschart/DESCRIPTION | 31 +- mschart-0.2.6/mschart/LICENSE | 4 mschart-0.2.6/mschart/MD5 | 76 +++--- mschart-0.2.6/mschart/NAMESPACE | 6 mschart-0.2.6/mschart/NEWS.md | 13 + mschart-0.2.6/mschart/R/axis_codes.R | 41 +-- mschart-0.2.6/mschart/R/body_add_chart.R | 4 mschart-0.2.6/mschart/R/chart_data_labels.R | 28 +- mschart-0.2.6/mschart/R/chart_data_styles.R |only mschart-0.2.6/mschart/R/chart_labels.R |only mschart-0.2.6/mschart/R/datasets.R |only mschart-0.2.6/mschart/R/defunct.R |only mschart-0.2.6/mschart/R/ms_chart.R | 251 ++++++++++----------- mschart-0.2.6/mschart/R/ph_with_chart.R | 27 -- mschart-0.2.6/mschart/R/series.R | 180 ++++++++------- mschart-0.2.6/mschart/R/simple_types.R | 2 mschart-0.2.6/mschart/R/to_pml.R |only mschart-0.2.6/mschart/R/utils.R | 11 mschart-0.2.6/mschart/README.md | 23 - mschart-0.2.6/mschart/inst/make |only mschart-0.2.6/mschart/man/body_add_chart.Rd | 4 mschart-0.2.6/mschart/man/browser_data.Rd | 6 mschart-0.2.6/mschart/man/browser_ts.Rd | 6 mschart-0.2.6/mschart/man/chart_ax_x.Rd | 2 mschart-0.2.6/mschart/man/chart_data_fill.Rd | 2 mschart-0.2.6/mschart/man/chart_data_line_style.Rd |only mschart-0.2.6/mschart/man/chart_data_line_width.Rd | 2 mschart-0.2.6/mschart/man/chart_data_size.Rd | 2 mschart-0.2.6/mschart/man/chart_data_smooth.Rd | 2 mschart-0.2.6/mschart/man/chart_data_stroke.Rd | 2 mschart-0.2.6/mschart/man/chart_data_symbol.Rd | 2 mschart-0.2.6/mschart/man/chart_labels.Rd | 2 mschart-0.2.6/mschart/man/chart_labels_text.Rd | 2 mschart-0.2.6/mschart/man/ms_areachart.Rd |only mschart-0.2.6/mschart/man/ms_barchart.Rd |only mschart-0.2.6/mschart/man/ms_linechart.Rd |only mschart-0.2.6/mschart/man/ms_scatterchart.Rd |only mschart-0.2.6/mschart/man/mschart-defunct.Rd |only 46 files changed, 370 insertions(+), 361 deletions(-)
Title: Design of Optimum-Path Forest Classifiers
Description: The 'LibOPF' is a framework to develop pattern recognition techniques based on optimum-path forests (OPF), João P. Papa and Alexandre X. Falcão (2008) <doi:10.1007/978-3-540-89639-5_89>, with methods for supervised learning and data clustering.
Author: Rafael Junqueira Martarelli [aut, cre],
João Paulo Papa [aut],
Alexandre Xavier Falcão [cph]
Maintainer: Rafael Junqueira Martarelli <rfel.jm@gmail.com>
Diff between LibOPF versions 2.6.0 dated 2020-04-12 and 2.6.1 dated 2021-04-07
DESCRIPTION | 15 +++++++-------- MD5 | 4 ++-- README.md | 8 +++++++- 3 files changed, 16 insertions(+), 11 deletions(-)
Title: Multiple Geometric Shape Point Layer for 'ggplot2'
Description: To create the multiple polygonal point layer for easily discernible shapes,
we developed the package, it is like the 'geom_point' of 'ggplot2'.
It can be used to draw the scatter plot.
Author: Shuangbin Xu [aut, cre] (<https://orcid.org/0000-0003-3513-5362>)
Maintainer: Shuangbin Xu <xshuangbin@163.com>
Diff between ggstar versions 1.0.1 dated 2021-02-10 and 1.0.2 dated 2021-04-07
DESCRIPTION | 13 ++-- MD5 | 22 +++---- NEWS.md | 2 R/geom-star.R | 21 ++++-- R/scale-starshape.R | 8 +- build/vignette.rds |binary inst/doc/ggstar.R | 4 - inst/doc/ggstar.Rmd | 4 - inst/doc/ggstar.html | 150 +++++++++++++++++++++++++++++-------------------- man/geom_star.Rd | 21 ++++-- man/scale_starshape.Rd | 10 +-- vignettes/ggstar.Rmd | 4 - 12 files changed, 156 insertions(+), 103 deletions(-)
Title: Stability Measures for Feature Selection
Description: An implementation of many measures for the
assessment of the stability of feature selection. Both simple measures
and measures which take into account the similarities between features
are available, see Bommert (2020) <doi:10.17877/DE290R-21906>.
Author: Andrea Bommert [aut, cre] (<https://orcid.org/0000-0002-1005-9351>),
Michel Lang [aut] (<https://orcid.org/0000-0001-9754-0393>)
Maintainer: Andrea Bommert <bommert@statistik.tu-dortmund.de>
Diff between stabm versions 1.2.0 dated 2021-03-30 and 1.2.1 dated 2021-04-07
DESCRIPTION | 6 +++--- MD5 | 9 +++++---- README.md | 18 ++++++++++++++++++ build/partial.rdb |binary inst/CITATION |only inst/doc/stabm.pdf |binary 6 files changed, 26 insertions(+), 7 deletions(-)
Title: Mixed-Effect Models, Particularly Spatial Models
Description: Inference based on mixed-effect models, including generalized linear mixed models with spatial correlations, multivariate responses, and models with non-Gaussian random effects (e.g., Beta). Various approximations of likelihood or restricted likelihood are implemented, in particular Laplace approximation and h-likelihood (Lee and Nelder 2001 <doi:10.1093/biomet/88.4.987>). Both classical geostatistical models, and Markov random field models on irregular grids (as considered in the 'INLA' package, <https://www.r-inla.org>), can be fitted. Variation in residual variance (heteroscedasticity) can itself be represented by a mixed-effect model.
Author: François Rousset [aut, cre, cph]
(<https://orcid.org/0000-0003-4670-0371>),
Jean-Baptiste Ferdy [aut, cph],
Alexandre Courtiol [aut] (<https://orcid.org/0000-0003-0637-2959>),
GSL authors [ctb] (src/gsl_bessel.*)
Maintainer: François Rousset <francois.rousset@umontpellier.fr>
Diff between spaMM versions 3.7.2 dated 2021-02-26 and 3.7.34 dated 2021-04-07
DESCRIPTION | 10 MD5 | 137 +++++----- NAMESPACE | 2 R/COMPoisson.R | 165 +++++++----- R/HLCor.R | 4 R/HLCor_body.R | 6 R/HLfit.R | 8 R/HLfit_Internals.R | 191 +++++++++++--- R/HLfit_body.R | 25 + R/HLfit_body_augZXy.R | 7 R/HLframes.R | 12 R/RcppExports.R | 8 R/SEM.R | 2 R/augZXy_obj.R | 3 R/confint.R | 68 +++-- R/corrHLfit.R | 8 R/corrMM.LRT.R | 32 +- R/cov_new_fix.R | 2 R/extractors.R | 46 +++ R/fit_as_ZX.R | 7 R/fit_as_sparsePrecision.R | 22 - R/fitme.R | 8 R/fitmecorrHLfit_body_internals.R | 103 ++++--- R/get_inits_by_glm.R | 4 R/multinomial.R | 3 R/negbin.R | 2 R/newPLS.R | 40 --- R/plot.HLfit.R | 2 R/poisson.R | 31 -- R/postfit_internals.R | 13 R/predict.R | 54 +++- R/preprocess_MV.R | 26 + R/preprocess_internals.R | 9 R/profile.R | 4 R/sXaug_EigenDense_QRP_Chol_scaled.R | 209 +++++++-------- R/sXaug_Matrix_CHM.R |only R/sXaug_Matrix_QRP_CHM.R | 217 ++++++++-------- R/sXaug_sparsePrecisions.R | 373 +++++++++++----------------- R/separator.R | 3 R/simulate.HL.R | 2 R/spaMM_boot.R | 2 R/summary.HL.R | 55 ++-- R/update.HL.R | 2 build/partial.rdb |binary data/recond.RData |only inst/NEWS.Rd | 26 + man/COMPoisson.Rd | 17 - man/PLS-internals.Rd | 2 man/confint.Rd | 16 - man/convergence.Rd | 24 - man/freight.Rd | 2 man/get_inits_from_fit.Rd | 2 man/get_matrix.Rd | 2 man/get_ranPars.Rd | 5 man/inits.Rd |only man/multinomial.Rd | 21 - man/options.Rd | 4 man/residVar.Rd | 2 man/spaMM-internal.Rd | 2 src/RcppExports.cpp | 26 + src/internals.cpp | 12 tests/test-all.R | 2 tests/testthat/nestedFiles/test-mv-nested.R | 26 + tests/testthat/test-COMPoisson.R | 4 tests/testthat/test-IsoriX-new.R | 5 tests/testthat/test-adjacency-corrMatrix.R | 10 tests/testthat/test-cloglog.R | 4 tests/testthat/test-confint.R | 5 tests/testthat/test-fixedLRT.R | 5 tests/testthat/test-multinomial.R | 2 tests/testthat/test-mv.R | 15 + 71 files changed, 1267 insertions(+), 901 deletions(-)
Title: Simulation Methods for Legislative Redistricting
Description: Enables researchers to sample redistricting plans from a pre-specified
target distribution using Sequential Monte Carlo and Markov Chain Monte Carlo
algorithms. The package allows for the implementation of various constraints in
the redistricting process such as geographic compactness and population parity
requirements. Tools for analysis such as computation of various summary statistics
and plotting functionality are also included. The package implements methods
described in Fifield, Higgins, Imai and Tarr (2020) <doi: 10.1080/10618600.2020.1739532>,
Fifield, Imai, Kawahara, and Kenny (2020) <doi: 10.1080/2330443X.2020.1791773>,
and McCartan and Imai (2020) <arXiv: 2008.06131>.
Author: Christopher T. Kenny [aut, cre],
Cory McCartan [aut],
Ben Fifield [aut],
Kosuke Imai [aut],
Jun Kawahara [ctb],
Alexander Tarr [ctb],
Michael Higgins [ctb]
Maintainer: Christopher T. Kenny <christopherkenny@fas.harvard.edu>
Diff between redist versions 2.0.2 dated 2020-10-13 and 3.0.1 dated 2021-04-07
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Title: a Non-Parametric Statistical Significance Test for Rolling
Correlation
Description: Estimates and plots (as a heat map) the statistical significance of rolling window correlation coefficients, which is carried out through a non-parametric computing-intensive method. This method addresses the effects due to the multiple testing (inflation of the Type I error) when the statistical significance is estimated for the rolling window correlation coefficients. The method is based on Monte Carlo simulations by permuting one of the variables (dependent) under analysis and keeping fixed the other variable (independent). We improve the computational efficiency of this method to reduce the computation time through parallel computing. The 'NonParRolCor' package also provides examples with synthetic and real-life ecological time series to exemplify its use. Methods derived from R. Telford (2013) <https://quantpalaeo.wordpress.com/2013/01/04/> and J.M. Polanco-Martinez (2020) <doi:10.1016/j.ecoinf.2020.101163>.
Author: Josue M. Polanco-Martinez [aut, cph, cre]
(<https://orcid.org/0000-0001-7164-0185>),
Jose L. Lopez-Martinez [ctb] (<https://orcid.org/0000-0002-2489-7559>)
Maintainer: Josue M. Polanco-Martinez <josue.m.polanco@gmail.com>
Diff between NonParRolCor versions 0.4.0 dated 2021-03-31 and 0.6.0 dated 2021-04-07
DESCRIPTION | 6 ++--- MD5 | 14 ++++++------ R/estimation_NonParRolCor.R | 45 ++++++++++++++++++++--------------------- R/heatmap_NonParRolCor.R | 32 +++++++++++++++-------------- build/partial.rdb |binary man/NonParRolCor-package.Rd | 4 +-- man/estimation_NonParRolCor.Rd | 6 ++--- man/heatmap_NonParRolCor.Rd | 10 ++++----- 8 files changed, 60 insertions(+), 57 deletions(-)
Title: A Handbook of Statistical Analyses Using R (3rd Edition)
Description: Functions, data sets, analyses and examples from the
third edition of the book
''A Handbook of Statistical Analyses Using R'' (Torsten Hothorn and Brian S.
Everitt, Chapman & Hall/CRC, 2014). The first chapter
of the book, which is entitled ''An Introduction to R'',
is completely included in this package, for all other chapters,
a vignette containing all data analyses is available. In addition,
Sweave source code for slides of selected chapters is included in
this package (see HSAUR3/inst/slides). The publishers web page is
'<http://www.crcpress.com/product/isbn/9781482204582>'.
Author: Torsten Hothorn and Brian S. Everitt
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
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HSAUR3-1.0-11/HSAUR3/inst/doc/Ch_logistic_regression_glm.Rnw | 2 HSAUR3-1.0-11/HSAUR3/inst/doc/Ch_logistic_regression_glm.pdf |binary HSAUR3-1.0-11/HSAUR3/inst/doc/Ch_meta_analysis.Rnw | 2 HSAUR3-1.0-11/HSAUR3/inst/doc/Ch_meta_analysis.pdf |binary HSAUR3-1.0-11/HSAUR3/inst/doc/Ch_missing_values.Rnw | 2 HSAUR3-1.0-11/HSAUR3/inst/doc/Ch_missing_values.pdf |binary HSAUR3-1.0-11/HSAUR3/inst/doc/Ch_multidimensional_scaling.Rnw | 2 HSAUR3-1.0-11/HSAUR3/inst/doc/Ch_multidimensional_scaling.pdf |binary HSAUR3-1.0-11/HSAUR3/inst/doc/Ch_multiple_linear_regression.Rnw | 2 HSAUR3-1.0-11/HSAUR3/inst/doc/Ch_multiple_linear_regression.pdf |binary HSAUR3-1.0-11/HSAUR3/inst/doc/Ch_principal_components_analysis.Rnw | 2 HSAUR3-1.0-11/HSAUR3/inst/doc/Ch_principal_components_analysis.pdf |binary HSAUR3-1.0-11/HSAUR3/inst/doc/Ch_quantile_regression.Rnw | 2 HSAUR3-1.0-11/HSAUR3/inst/doc/Ch_quantile_regression.pdf |binary HSAUR3-1.0-11/HSAUR3/inst/doc/Ch_recursive_partitioning.Rnw | 2 HSAUR3-1.0-11/HSAUR3/inst/doc/Ch_recursive_partitioning.pdf |binary HSAUR3-1.0-11/HSAUR3/inst/doc/Ch_simple_inference.Rnw | 2 HSAUR3-1.0-11/HSAUR3/inst/doc/Ch_simple_inference.pdf |binary HSAUR3-1.0-11/HSAUR3/inst/doc/Ch_simultaneous_inference.Rnw | 2 HSAUR3-1.0-11/HSAUR3/inst/doc/Ch_simultaneous_inference.pdf |binary HSAUR3-1.0-11/HSAUR3/inst/doc/Ch_survival_analysis.Rnw | 2 HSAUR3-1.0-11/HSAUR3/inst/doc/Ch_survival_analysis.pdf |binary HSAUR3-1.0-11/HSAUR3/man/CHFLS.Rd | 2 HSAUR3-1.0-11/HSAUR3/vignettes/Ch_analysing_longitudinal_dataI.Rnw | 2 HSAUR3-1.0-11/HSAUR3/vignettes/Ch_analysing_longitudinal_dataII.Rnw | 2 HSAUR3-1.0-11/HSAUR3/vignettes/Ch_analysis_of_variance.Rnw | 2 HSAUR3-1.0-11/HSAUR3/vignettes/Ch_bayesian_inference.Rnw | 2 HSAUR3-1.0-11/HSAUR3/vignettes/Ch_cluster_analysis.Rnw | 2 HSAUR3-1.0-11/HSAUR3/vignettes/Ch_conditional_inference.Rnw | 2 HSAUR3-1.0-11/HSAUR3/vignettes/Ch_density_estimation.Rnw | 2 HSAUR3-1.0-11/HSAUR3/vignettes/Ch_errata.Rnw | 2 HSAUR3-1.0-11/HSAUR3/vignettes/Ch_gam.Rnw | 2 HSAUR3-1.0-11/HSAUR3/vignettes/Ch_graphical_display.Rnw | 2 HSAUR3-1.0-11/HSAUR3/vignettes/Ch_introduction_to_R.Rnw | 4 HSAUR3-1.0-11/HSAUR3/vignettes/Ch_logistic_regression_glm.Rnw | 2 HSAUR3-1.0-11/HSAUR3/vignettes/Ch_meta_analysis.Rnw | 2 HSAUR3-1.0-11/HSAUR3/vignettes/Ch_missing_values.Rnw | 2 HSAUR3-1.0-11/HSAUR3/vignettes/Ch_multidimensional_scaling.Rnw | 2 HSAUR3-1.0-11/HSAUR3/vignettes/Ch_multiple_linear_regression.Rnw | 2 HSAUR3-1.0-11/HSAUR3/vignettes/Ch_principal_components_analysis.Rnw | 2 HSAUR3-1.0-11/HSAUR3/vignettes/Ch_quantile_regression.Rnw | 2 HSAUR3-1.0-11/HSAUR3/vignettes/Ch_recursive_partitioning.Rnw | 2 HSAUR3-1.0-11/HSAUR3/vignettes/Ch_simple_inference.Rnw | 2 HSAUR3-1.0-11/HSAUR3/vignettes/Ch_simultaneous_inference.Rnw | 2 HSAUR3-1.0-11/HSAUR3/vignettes/Ch_survival_analysis.Rnw | 2 HSAUR3-1.0-11/HSAUR3/vignettes/tables/rec.tex | 10 102 files changed, 118 insertions(+), 204 deletions(-)
Title: Estimation of Hawkes Processes from Binned Observations
Description: Implements an estimation method for Hawkes processes when count data are only observed in discrete time, using a spectral approach derived from the Bartlett spectrum, see Cheysson and Lang (2020) <arXiv:2003.04314>. Some general use functions for Hawkes processes are also included: simulation of (in)homogeneous Hawkes process, maximum likelihood estimation, residual analysis, etc.
Author: Felix Cheysson [aut, cre] (<https://orcid.org/0000-0002-9095-2878>)
Maintainer: Felix Cheysson <felix@cheysson.fr>
Diff between hawkesbow versions 1.0.0 dated 2021-03-31 and 1.0.1 dated 2021-04-07
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NAMESPACE | 1 + R/hawkesbow-package.R | 2 +- inst/doc/hawkesbow.pdf |binary src/utils.cpp | 2 ++ 6 files changed, 12 insertions(+), 9 deletions(-)
Title: Port of 'Dparser' Package
Description: A Scannerless GLR parser/parser generator. Note that GLR standing for "generalized LR", where L stands for "left-to-right" and
R stands for "rightmost (derivation)". For more information see <https://en.wikipedia.org/wiki/GLR_parser>. This parser is based on the Tomita
(1987) algorithm. (Paper can be found at <https://www.aclweb.org/anthology/P84-1073.pdf>).
The original 'dparser' package documentation can be found at <http://dparser.sourceforge.net/>. This allows you to add mini-languages to R (like
RxODE's ODE mini-language Wang, Hallow, and James 2015 <DOI:10.1002/psp4.12052>) or to parse other languages like 'NONMEM' to automatically translate
them to R code. To use this in your code, add a LinkingTo dparser in your DESCRIPTION file and instead of using #include <dparse.h> use
#include <dparser.h>. This also provides a R-based port of the make_dparser <http://dparser.sourceforge.net/d/make_dparser.cat> command called
mkdparser(). Additionally you can parse an arbitrary grammar within R using the dparse() function, which works on most OSes and is mainly for grammar
testing. The fastest parsing, of course, occurs at the C level, and is suggested.
Author: Matthew Fidler [aut, cre],
John Plevyak [aut, cph]
Maintainer: Matthew Fidler <matthew.fidler@gmail.com>
Diff between dparser versions 1.3.1-3 dated 2021-04-06 and 1.3.1-4 dated 2021-04-07
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 5 +++++ R/version.R | 2 +- src/write_tables.c | 8 ++++++-- tests/testthat/test-dparser.R | 3 --- 6 files changed, 20 insertions(+), 14 deletions(-)
Title: Tools to Make Developing R Packages Easier
Description: Collection of package development tools.
Author: Hadley Wickham [aut],
Jim Hester [aut, cre],
Winston Chang [aut],
RStudio [cph, fnd]
Maintainer: Jim Hester <jim.hester@rstudio.com>
Diff between devtools versions 2.3.2 dated 2020-09-18 and 2.4.0 dated 2021-04-07
devtools-2.3.2/devtools/R/check-results.R |only devtools-2.3.2/devtools/R/cran.R |only devtools-2.3.2/devtools/R/inst.R |only devtools-2.3.2/devtools/R/upload-ftp.R |only devtools-2.3.2/devtools/man/check_failures.Rd |only devtools-2.3.2/devtools/man/devtest.Rd |only devtools-2.3.2/devtools/tests/testthat/test-examples.R |only devtools-2.3.2/devtools/tests/testthat/test-sort.R |only devtools-2.3.2/devtools/tests/testthat/test-source_gist.R |only devtools-2.3.2/devtools/tests/testthat/testReadme |only devtools-2.4.0/devtools/DESCRIPTION | 43 - devtools-2.4.0/devtools/LICENSE |only devtools-2.4.0/devtools/MD5 | 153 ++--- devtools-2.4.0/devtools/NAMESPACE | 10 devtools-2.4.0/devtools/NEWS.md | 40 + devtools-2.4.0/devtools/R/active.R |only devtools-2.4.0/devtools/R/build-manual.R | 6 devtools-2.4.0/devtools/R/build-readme.R | 31 - devtools-2.4.0/devtools/R/build-site.R | 4 devtools-2.4.0/devtools/R/check-devtools.R | 22 devtools-2.4.0/devtools/R/check-doc.R | 4 devtools-2.4.0/devtools/R/check-win.R | 51 + devtools-2.4.0/devtools/R/check.R | 50 + devtools-2.4.0/devtools/R/dev-mode.R | 19 devtools-2.4.0/devtools/R/document.R | 26 devtools-2.4.0/devtools/R/git.R | 2 devtools-2.4.0/devtools/R/github.R | 108 --- devtools-2.4.0/devtools/R/has-tests.R | 7 devtools-2.4.0/devtools/R/install.R | 4 devtools-2.4.0/devtools/R/lint.R | 4 devtools-2.4.0/devtools/R/package.R | 25 devtools-2.4.0/devtools/R/pkgbuild.R | 5 devtools-2.4.0/devtools/R/pkgload.R | 6 devtools-2.4.0/devtools/R/r-hub.R | 6 devtools-2.4.0/devtools/R/release.R | 48 - devtools-2.4.0/devtools/R/reload.R | 4 devtools-2.4.0/devtools/R/revdep.R | 5 devtools-2.4.0/devtools/R/run-examples.R | 16 devtools-2.4.0/devtools/R/run-source.R | 15 devtools-2.4.0/devtools/R/show-news.R | 4 devtools-2.4.0/devtools/R/sitrep.R | 27 devtools-2.4.0/devtools/R/spell-check.R | 2 devtools-2.4.0/devtools/R/test.R | 298 ++-------- devtools-2.4.0/devtools/R/uninstall.R | 4 devtools-2.4.0/devtools/R/utils.R | 130 ---- devtools-2.4.0/devtools/R/vignette-r.R | 90 +-- devtools-2.4.0/devtools/R/vignettes.R | 45 - devtools-2.4.0/devtools/R/wd.R | 6 devtools-2.4.0/devtools/R/zzz.R | 2 devtools-2.4.0/devtools/build/vignette.rds |binary devtools-2.4.0/devtools/inst/WORDLIST | 1 devtools-2.4.0/devtools/inst/doc/dependencies.html | 23 devtools-2.4.0/devtools/man/build.Rd | 5 devtools-2.4.0/devtools/man/build_vignettes.Rd | 2 devtools-2.4.0/devtools/man/check.Rd | 13 devtools-2.4.0/devtools/man/devtools-deprecated.Rd | 11 devtools-2.4.0/devtools/man/devtools.Rd | 4 devtools-2.4.0/devtools/man/install.Rd | 2 devtools-2.4.0/devtools/man/install_deps.Rd | 4 devtools-2.4.0/devtools/man/load_all.Rd | 12 devtools-2.4.0/devtools/man/package_file.Rd | 1 devtools-2.4.0/devtools/man/reexports.Rd | 7 devtools-2.4.0/devtools/man/revdep.Rd | 1 devtools-2.4.0/devtools/man/test.Rd | 49 - devtools-2.4.0/devtools/man/uses_testthat.Rd |only devtools-2.4.0/devtools/tests/testthat/helper.R | 27 devtools-2.4.0/devtools/tests/testthat/test-active.R |only devtools-2.4.0/devtools/tests/testthat/test-build-readme.R | 45 + devtools-2.4.0/devtools/tests/testthat/test-build-site.R | 13 devtools-2.4.0/devtools/tests/testthat/test-check.R | 35 - devtools-2.4.0/devtools/tests/testthat/test-install.R | 22 devtools-2.4.0/devtools/tests/testthat/test-reload.R | 6 devtools-2.4.0/devtools/tests/testthat/test-run-examples.R |only devtools-2.4.0/devtools/tests/testthat/test-run-source.R |only devtools-2.4.0/devtools/tests/testthat/test-sitrep.R | 1 devtools-2.4.0/devtools/tests/testthat/test-test.R | 49 - devtools-2.4.0/devtools/tests/testthat/test-uninstall.R | 18 devtools-2.4.0/devtools/tests/testthat/test-utils.R |only devtools-2.4.0/devtools/tests/testthat/test-vignettes.R | 133 ++-- devtools-2.4.0/devtools/tests/testthat/testTest/DESCRIPTION | 6 devtools-2.4.0/devtools/tests/testthat/testTest/tests/testthat/test-dummy.R | 2 devtools-2.4.0/devtools/tests/testthat/testTest/tests/testthat/test-envvar.R | 2 devtools-2.4.0/devtools/tests/testthat/testTestWithDepends/tests/testthat/test-dummy.R | 2 devtools-2.4.0/devtools/tests/testthat/testTestWithFailure/tests/testthat/test-fail.R | 2 devtools-2.4.0/devtools/tests/testthat/testTestWithFailure/tests/testthat/test-warn.R | 2 85 files changed, 800 insertions(+), 1022 deletions(-)
Title: Bayesian Structural Time Series
Description: Time series regression using dynamic linear models fit using
MCMC. See Scott and Varian (2014) <DOI:10.1504/IJMMNO.2014.059942>, among many
other sources.
Author: Steven L. Scott <steve.the.bayesian@gmail.com>
Maintainer: Steven L. Scott <steve.the.bayesian@gmail.com>
Diff between bsts versions 0.9.5 dated 2020-05-02 and 0.9.6 dated 2021-04-07
DESCRIPTION | 12 ++++++------ MD5 | 27 +++++++++++++++++---------- R/add.seasonal.R | 4 ++-- R/mixed.frequency.R | 4 ++-- R/update.bsts.R |only inst/tests/tests/testthat/test-ar.R |only inst/tests/tests/testthat/test-student.R |only inst/tests/testthat/test-ar.R |only inst/tests/testthat/test-student.R |only man/bsts.Rd | 4 ++-- man/dirm.Rd | 2 +- man/mbsts.Rd | 14 +++++++------- src/state_space_student_model_manager.cc | 11 ++++++----- tests/testthat/test-ar.R |only tests/testthat/test-dirm.R | 8 ++++---- tests/testthat/test-prediction-errors.R | 2 +- tests/testthat/test-regressionholiday.R | 4 ++-- tests/testthat/test-student.R |only 18 files changed, 50 insertions(+), 42 deletions(-)
Title: Predict and Visualize Population-Level Changes in Allele
Frequencies in Response to Climate Change
Description: Methods (Kindt, R. 2021. <doi:10.1101/2021.01.15.426775>) are provided of calibrating and predicting shifts in allele frequencies through redundancy analysis ('vegan::rda()') and generalized additive models ('mgcv::gam()'). Visualization functions for predicted changes in allele frequencies include 'shift.dot.ggplot()', 'shift.pie.ggplot()', 'shift.moon.ggplot()', 'shift.waffle.ggplot()' and 'shift.surf.ggplot()' that are made with input data sets that are prepared by helper functions for each visualization method. Examples in the documentation show how to prepare animated climate change graphics through a time series with the 'gganimate' package. Function 'amova.rda()' shows how Analysis of Molecular Variance can be directly conducted with the results from redundancy analysis.
Author: Roeland Kindt [cre, aut] (<https://orcid.org/0000-0002-7672-0712>)
Maintainer: Roeland Kindt <R.KINDT@CGIAR.ORG>
Diff between AlleleShift versions 0.9-2 dated 2021-01-29 and 1.0-1 dated 2021-04-07
DESCRIPTION | 8 - MD5 | 19 +-- NAMESPACE | 2 R/environmental.novel.R |only R/shift.dot.ggplot.R | 141 +++++++++++----------- R/shift.moon.ggplot.R | 272 ++++++++++++++++++++++---------------------- R/shift.pie.ggplot.R | 279 ++++++++++++++++++++++----------------------- R/shift.waffle.ggplot.R | 295 ++++++++++++++++++++++++------------------------ build/partial.rdb |binary inst/ChangeLog | 9 + man/population.shift.Rd | 32 +++-- 11 files changed, 543 insertions(+), 514 deletions(-)
More information about gghilbertstrings at CRAN
Permanent link
More information about ClaimsProblems at CRAN
Permanent link
Title: Bay Area Bike Share Trips in 2014
Description: Anonymised Bay Area bike share trip data for the year 2014.
Also contains additional metadata on stations and weather.
Author: Arunkumar Srinivasan [aut, cre]
Maintainer: Arunkumar Srinivasan <asrini@pm.me>
Diff between bikeshare14 versions 0.1.2 dated 2019-01-03 and 0.1.4 dated 2021-04-07
DESCRIPTION | 15 ++++++++------- MD5 | 10 +++++----- NEWS.md | 10 +++++++--- man/bastations.rd | 2 +- man/batrips.rd | 2 +- man/baweather.rd | 2 +- 6 files changed, 23 insertions(+), 18 deletions(-)
Title: Automatic Structural Time Series Models
Description: Automatic model selection for structural time series decomposition into trend, cycle, and seasonal components using the Kalman filter.
Koopman, Siem Jan and Marius Ooms (2012) "Forecasting Economic Time Series Using Unobserved Components Time Series Models" <doi:10.1093/oxfordhb/9780195398649.013.0006>.
Kim, Chang-Jin and Charles R. Nelson (1999) "State-Space Models with Regime Switching: Classical and Gibbs-Sampling Approaches with Applications" <doi:10.7551/mitpress/6444.001.0001><http://econ.korea.ac.kr/~cjkim/>.
Author: Alex Hubbard
Maintainer: Alex Hubbard <hubbard.alex@gmail.com>
Diff between autostsm versions 1.2.1 dated 2021-03-01 and 1.2.2 dated 2021-04-07
DESCRIPTION | 11 MD5 | 52 ++-- NAMESPACE | 34 +- R/RcppExports.R | 8 R/data.R | 79 +++--- R/stsm_constraints.R | 307 ++++++++++++-------------- R/stsm_data_checks.R | 2 R/stsm_detect_anomalies.R | 19 - R/stsm_detect_breaks.R | 158 +++++++------ R/stsm_detect_factors.R |only R/stsm_estimate.R | 50 ++-- R/stsm_forecast.R | 55 ++-- R/stsm_init_pars.R | 100 +------- R/stsm_init_vals.R | 10 R/stsm_multivar_ssm.R |only R/stsm_ssm.R | 464 +++++++++++++++++----------------------- data/sw_dcf.RData |only inst/doc/autostsm_vignette.R | 3 inst/doc/autostsm_vignette.Rmd | 47 ++-- inst/doc/autostsm_vignette.html | 360 +++++++++++++++---------------- man/stsm_check_exo.Rd | 38 +-- man/stsm_check_exo_fc.Rd | 38 +-- man/stsm_check_y.Rd | 34 +- man/stsm_estimate.Rd | 263 +++++++++++----------- man/stsm_format_exo.Rd | 42 +-- man/sw_dcf.Rd |only src/RcppExports.cpp | 49 +--- src/kalmanfilter.cpp | 107 +++------ vignettes/autostsm_vignette.Rmd | 47 ++-- 29 files changed, 1113 insertions(+), 1264 deletions(-)
Title: Multivariate Multiscale Spatial Analysis
Description: Tools for the multiscale spatial analysis of multivariate data.
Several methods are based on the use of a spatial weighting matrix and its
eigenvector decomposition (Moran's Eigenvectors Maps, MEM).
Several approaches are described in the review Dray et al (2012)
<doi:10.1890/11-1183.1>.
Author: Stéphane Dray, David Bauman, Guillaume Blanchet, Daniel Borcard,
Sylvie Clappe, Guillaume Guenard, Thibaut Jombart, Guillaume Larocque,
Pierre Legendre, Naima Madi, Helene H Wagner
Maintainer: Stéphane Dray <stephane.dray@univ-lyon1.fr>
Diff between adespatial versions 0.3-13 dated 2021-02-26 and 0.3-14 dated 2021-04-07
adespatial-0.3-13/adespatial/man/figures/logo.png |only adespatial-0.3-14/adespatial/DESCRIPTION | 10 ++-- adespatial-0.3-14/adespatial/MD5 | 16 +++---- adespatial-0.3-14/adespatial/R/LCBD.comp.R | 3 - adespatial-0.3-14/adespatial/R/globloc.rtests.R | 10 ---- adespatial-0.3-14/adespatial/inst/doc/tutorial.R | 7 +-- adespatial-0.3-14/adespatial/inst/doc/tutorial.Rmd | 9 +--- adespatial-0.3-14/adespatial/inst/doc/tutorial.html | 41 +++++++++++--------- adespatial-0.3-14/adespatial/man/figures/logo.svg |only adespatial-0.3-14/adespatial/vignettes/tutorial.Rmd | 9 +--- 10 files changed, 51 insertions(+), 54 deletions(-)
Title: Tools for Comparing Text Messages Across Time and Media
Description: A collection of tools for measuring the similarity of text messages and tracing the flow of messages over
time and across media.
Author: Kasper Welbers & Wouter van Atteveldt
Maintainer: Kasper Welbers <kasperwelbers@gmail.com>
Diff between RNewsflow versions 1.2.5 dated 2020-11-02 and 1.2.6 dated 2021-04-07
DESCRIPTION | 6 ++-- MD5 | 22 ++++++++-------- R/compare_documents.r | 8 +++--- R/cp_sensitive_lookup.r | 50 +++----------------------------------- R/crossprod.r | 5 +-- R/feature_preparation.r | 8 +++--- build/vignette.rds |binary inst/doc/RNewsflow.html | 10 +++---- man/compare_documents.Rd | 3 +- man/create_queries.Rd | 2 - tests/testthat/test_lookup_cooc.r | 3 +- tests/testthat/test_newsflow.r | 3 +- 12 files changed, 40 insertions(+), 80 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-11-18 0.1.3
2018-10-31 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-10-28 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-05-08 2.3.0
2013-05-02 2.2.0
2012-08-17 2.0.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-10-07 0.1.1
2014-10-05 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-12-15 2.2
2016-11-15 2.1
2016-03-07 2.0
2016-01-10 1.9
2016-01-09 1.8
2015-10-28 1.7
2015-10-25 1.5
2015-03-10 1.4
2014-12-10 1.3
2013-12-20 1.2
2011-12-10 1.1
2011-09-07 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-03-26 4.4.3
2018-10-05 4.3.2
2018-01-24 4.2.6
2017-02-27 4.2.3
2016-11-30 4.2.1
2016-11-29 4.2.0
2015-11-27 4.0.2
2015-01-23 3.0.2
2014-01-16 3.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-07-18 1.0-2
2018-12-16 1.0-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-07-15 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-25 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-01-24 0.4
2014-01-24 0.41
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-11-13 1.0.3
2016-05-23 0.1.6
2015-11-26 0.1.4
2015-07-01 0.1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-07-19 1.0.3
2015-03-25 1.0.1
2015-03-15 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-06 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-28 1.5-3-1.0.1
2021-03-24 1.5-3-1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-15 1.0.2
2020-12-11 1.0.1
2020-10-13 1.0.0
Title: Estimation and Inference Methods for Sorted Causal Effects and
Classification Analysis
Description: Implements the estimation and inference methods for sorted causal effects and
classification analysis as in Chernozhukov, Fernandez-Val and Luo (2018) <doi:10.3982/ECTA14415>.
Author: Shuowen Chen [aut, cre],
Victor Chernozhukov [aut],
Ivan Fernandez-Val [aut],
Ye Luo [aut]
Maintainer: Shuowen Chen <swchen@bu.edu>
Diff between SortedEffects versions 1.2.0 dated 2020-04-01 and 1.3.0 dated 2021-04-07
DESCRIPTION | 8 +-- MD5 | 28 +++++------ NEWS.md | 8 ++- R/spe.R | 15 +++--- build/vignette.rds |binary inst/doc/SortedEffects.R | 24 +++++----- inst/doc/SortedEffects.html | 103 +++++++++++++++++++++++++++++++++++++------- man/ca.Rd | 31 ++++++++++--- man/mortgage.Rd | 6 +- man/plot.ca.Rd | 3 - man/plot.spe.Rd | 11 +++- man/plot.subpop.Rd | 16 +++++- man/spe.Rd | 25 ++++++++-- man/subpop.Rd | 23 +++++++-- man/wage2015.Rd | 6 +- 15 files changed, 224 insertions(+), 83 deletions(-)
Title: Tools for Biometry and Applied Statistics in Agricultural
Science
Description: Tools designed to perform and evaluate cluster analysis (including Tocher's algorithm),
discriminant analysis and path analysis (standard and under collinearity), as well as some
useful miscellaneous tools for dealing with sample size and optimum plot size calculations.
A test for seed sample heterogeneity is now available. Mantel's permutation test can be found in this package.
A new approach for calculating its power is implemented. biotools also contains tests for genetic covariance components.
Heuristic approaches for performing non-parametric spatial predictions of generic response variables and
spatial gene diversity are implemented.
Author: Anderson Rodrigo da Silva [aut, cre]
(<https://orcid.org/0000-0003-2518-542X>)
Maintainer: Anderson Rodrigo da Silva <anderson.agro@hotmail.com>
Diff between biotools versions 4.0 dated 2020-12-07 and 4.1 dated 2021-04-07
DESCRIPTION | 8 ++++---- MD5 | 12 +++++++----- NAMESPACE | 4 +++- NEWS | 5 +++++ R/mvpaircomp.R |only inst/CITATION | 17 +++++++++++++++++ man/biotools-package.Rd | 6 ++---- man/mvpaircomp.Rd |only 8 files changed, 38 insertions(+), 14 deletions(-)