Title: Read and Write Sparse Matrices in 'SVMLight' and 'LibSVM'
Formats
Description: Read and write labelled sparse matrices in text format as used by
software such as 'SVMLight', 'LibSVM', 'ThunderSVM', 'LibFM', 'xLearn', 'XGBoost', 'LightGBM',
and others. Supports labelled data for regression, classification (binary, multi-class, multi-label),
and ranking (with 'qid' field), and can handle header metadata and comments in files.
Author: David Cortes
Maintainer: David Cortes <david.cortes.rivera@gmail.com>
Diff between readsparse versions 0.1.2 dated 2021-04-07 and 0.1.2-1 dated 2021-04-12
readsparse-0.1.2-1/readsparse/DESCRIPTION | 8 readsparse-0.1.2-1/readsparse/MD5 | 15 - readsparse-0.1.2-1/readsparse/R/RcppExports.R | 4 readsparse-0.1.2-1/readsparse/R/read_sparse.R | 34 ++- readsparse-0.1.2-1/readsparse/man/read.sparse.Rd | 18 - readsparse-0.1.2-1/readsparse/src/RcppExports.cpp | 10 readsparse-0.1.2-1/readsparse/src/Rwrapper.cpp | 111 ++++++---- readsparse-0.1.2-1/readsparse/tests/testthat/test-read-write.R | 46 +++- readsparse-0.1.2/readsparse/src/python_streams.h |only 9 files changed, 165 insertions(+), 81 deletions(-)
Title: Building Augmented Data to Run Multi-State Models with 'msm'
Package
Description: A fast and general method for restructuring classical longitudinal data into
augmented ones. The reason for this is to facilitate the modeling of longitudinal data under
a multi-state framework using the 'msm' package.
Author: Francesco Grossetti [aut, cre]
(<https://orcid.org/0000-0002-5130-7745>)
Maintainer: Francesco Grossetti <francesco.grossetti@unibocconi.it>
Diff between msmtools versions 2.0.0 dated 2021-04-07 and 2.0.1 dated 2021-04-12
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 12 +++++++++++- README.md | 2 +- inst/doc/msmtools.Rmd | 18 +++++++++--------- inst/doc/msmtools.html | 22 +++++++++++----------- vignettes/msmtools.Rmd | 18 +++++++++--------- 7 files changed, 51 insertions(+), 41 deletions(-)
Title: Regularized Mediation Analysis
Description: Mediation analysis for multiple mediators by penalized structural equation models with different types of penalties depending on whether there are multiple mediators and only one exposure and one outcome variable (using sparse group lasso) or multiple exposures, multiple mediators, and multiple outcome variables (using lasso, L1, penalties).
Author: Jason Sinnwell [aut, cre] (<https://orcid.org/0000-0003-1964-5522>),
Daniel Schaid [aut] (<https://orcid.org/0000-0003-1457-6433>)
Maintainer: Jason Sinnwell <sinnwell.jason@mayo.edu>
Diff between regmed versions 1.1.0 dated 2020-06-05 and 2.0.4 dated 2021-04-12
regmed-1.1.0/regmed/R/get.best.R |only regmed-1.1.0/regmed/R/getFit.regmed.grid.R |only regmed-1.1.0/regmed/R/lavaan.model.R |only regmed-1.1.0/regmed/R/plot.regmed.R |only regmed-1.1.0/regmed/R/reFitBestFit.R |only regmed-1.1.0/regmed/R/regmed_dat_check.R |only regmed-1.1.0/regmed/R/regmed_gridData.R |only regmed-1.1.0/regmed/R/regmed_grid_update.R |only regmed-1.1.0/regmed/R/regmed_init.R |only regmed-1.1.0/regmed/R/trim.best.R |only regmed-1.1.0/regmed/README.md |only regmed-1.1.0/regmed/data/regmed_example.RData |only regmed-1.1.0/regmed/inst/doc/regmed_demo.R |only regmed-1.1.0/regmed/inst/doc/regmed_demo.Rmd |only regmed-1.1.0/regmed/inst/doc/regmed_demo.html |only regmed-1.1.0/regmed/man/get.best.Rd |only regmed-1.1.0/regmed/man/getFit.regmed.grid.Rd |only regmed-1.1.0/regmed/man/lavaan.model.Rd |only regmed-1.1.0/regmed/man/plot.regmed.Rd |only regmed-1.1.0/regmed/man/regmed_example.Rd |only regmed-1.1.0/regmed/man/summary.regmed.Rd |only regmed-1.1.0/regmed/man/trim.best.Rd |only regmed-1.1.0/regmed/tests/test.regmed.R |only regmed-1.1.0/regmed/tests/test.regmed.Rout.save |only regmed-1.1.0/regmed/vignettes/regmed_demo.Rmd |only regmed-2.0.4/regmed/DESCRIPTION | 22 +-- regmed-2.0.4/regmed/MD5 | 110 ++++++++++++------- regmed-2.0.4/regmed/NAMESPACE | 24 +++- regmed-2.0.4/regmed/R/RcppExports.R | 4 regmed-2.0.4/regmed/R/mvregmed.dat.check.R |only regmed-2.0.4/regmed/R/mvregmed.edges.R |only regmed-2.0.4/regmed/R/mvregmed.fit.R |only regmed-2.0.4/regmed/R/mvregmed.graph.attributes.R |only regmed-2.0.4/regmed/R/mvregmed.grid.R |only regmed-2.0.4/regmed/R/mvregmed.grid.bestfit.R |only regmed-2.0.4/regmed/R/mvregmed.grid.data.R |only regmed-2.0.4/regmed/R/mvregmed.grid.update.R |only regmed-2.0.4/regmed/R/mvregmed.init.R |only regmed-2.0.4/regmed/R/mvregmed.lavaan.dat.R |only regmed-2.0.4/regmed/R/mvregmed.lavaan.model.R |only regmed-2.0.4/regmed/R/plot.mvregmed.edges.R |only regmed-2.0.4/regmed/R/plot.mvregmed.grid.R |only regmed-2.0.4/regmed/R/plot.regmed.edges.R |only regmed-2.0.4/regmed/R/print.regmed.R | 6 - regmed-2.0.4/regmed/R/regmed.dat.check.R |only regmed-2.0.4/regmed/R/regmed.edges.R |only regmed-2.0.4/regmed/R/regmed.fit.R | 19 +-- regmed-2.0.4/regmed/R/regmed.grid.R | 23 +-- regmed-2.0.4/regmed/R/regmed.grid.bestfit.R |only regmed-2.0.4/regmed/R/regmed.grid.data.R |only regmed-2.0.4/regmed/R/regmed.grid.update.R |only regmed-2.0.4/regmed/R/regmed.init.R |only regmed-2.0.4/regmed/R/regmed.lavaan.dat.R |only regmed-2.0.4/regmed/R/regmed.lavaan.model.R |only regmed-2.0.4/regmed/R/regmed.prefilter.R |only regmed-2.0.4/regmed/R/summary.lavaan.R |only regmed-2.0.4/regmed/R/summary.mvregmed.R |only regmed-2.0.4/regmed/R/summary.regmed.R | 5 regmed-2.0.4/regmed/build/partial.rdb |binary regmed-2.0.4/regmed/build/vignette.rds |binary regmed-2.0.4/regmed/data/medsim.RData |only regmed-2.0.4/regmed/inst/NEWS.Rd | 11 + regmed-2.0.4/regmed/inst/doc/regmed.R |only regmed-2.0.4/regmed/inst/doc/regmed.Rmd |only regmed-2.0.4/regmed/inst/doc/regmed.html |only regmed-2.0.4/regmed/man/medsim.Rd |only regmed-2.0.4/regmed/man/mvregmed.dat.check.Rd |only regmed-2.0.4/regmed/man/mvregmed.edges.Rd |only regmed-2.0.4/regmed/man/mvregmed.fit.Rd |only regmed-2.0.4/regmed/man/mvregmed.graph.attributes.Rd |only regmed-2.0.4/regmed/man/mvregmed.grid.Rd |only regmed-2.0.4/regmed/man/mvregmed.grid.bestfit.Rd |only regmed-2.0.4/regmed/man/mvregmed.grid.data.Rd |only regmed-2.0.4/regmed/man/mvregmed.grid.update.Rd |only regmed-2.0.4/regmed/man/mvregmed.init.Rd |only regmed-2.0.4/regmed/man/mvregmed.lavaan.dat.Rd |only regmed-2.0.4/regmed/man/mvregmed.lavaan.model.Rd |only regmed-2.0.4/regmed/man/plot.mvregmed.grid.Rd |only regmed-2.0.4/regmed/man/plot.regmed.grid.Rd | 10 - regmed-2.0.4/regmed/man/regmed-package.Rd | 6 - regmed-2.0.4/regmed/man/regmed.edges.Rd |only regmed-2.0.4/regmed/man/regmed.fit.Rd | 32 +---- regmed-2.0.4/regmed/man/regmed.grid.Rd | 33 ++--- regmed-2.0.4/regmed/man/regmed.grid.bestfit.Rd |only regmed-2.0.4/regmed/man/regmed.lavaan.dat.Rd |only regmed-2.0.4/regmed/man/regmed.lavaan.model.Rd |only regmed-2.0.4/regmed/man/regmed.prefilter.Rd |only regmed-2.0.4/regmed/man/summary.mvregmed.Rd |only regmed-2.0.4/regmed/src/RcppExports.cpp | 26 ++++ regmed-2.0.4/regmed/src/mvregmed.cpp |only regmed-2.0.4/regmed/tests/testthat |only regmed-2.0.4/regmed/tests/testthat.R |only regmed-2.0.4/regmed/vignettes/regmed.Rmd |only 93 files changed, 201 insertions(+), 130 deletions(-)
Title: Helper Functions for 'mlr3'
Description: Frequently used helper functions and assertions
used in 'mlr3' and its companion packages. Comes with helper functions
for functional programming, for printing, to work with 'data.table',
as well as some generally useful 'R6' classes. This package also
supersedes the package 'BBmisc'.
Author: Michel Lang [cre, aut] (<https://orcid.org/0000-0001-9754-0393>),
Patrick Schratz [aut] (<https://orcid.org/0000-0003-0748-6624>)
Maintainer: Michel Lang <michellang@gmail.com>
Diff between mlr3misc versions 0.8.0 dated 2021-03-19 and 0.9.0 dated 2021-04-12
DESCRIPTION | 6 +++--- MD5 | 26 +++++++++++++++----------- NAMESPACE | 2 ++ NEWS.md | 8 +++++++- R/count_missing.R |only R/encapsulate.R | 2 +- R/purrr_map.R | 24 ++++++++++++++++-------- R/reorder_vector.R | 27 +++++++-------------------- man/count_missing.Rd |only man/encapsulate.Rd | 2 +- man/reorder_vector.Rd | 13 ++++++------- src/count_missing.c |only src/init.c | 2 ++ tests/testthat/test_count_missing.R |only tests/testthat/test_map.R | 4 ++++ tests/testthat/test_reorder_vector.R | 16 ++++++++-------- 16 files changed, 72 insertions(+), 60 deletions(-)
Title: A Multi-Modal Simulator for Spearheading Single-Cell Omics
Analyses
Description: A novel, multi-modal simulation engine for
studying dynamic cellular processes at single-cell resolution. 'dyngen'
is more flexible than current single-cell simulation engines. It
allows better method development and benchmarking, thereby stimulating
development and testing of novel computational methods. Cannoodt et
al. (2020) <doi:10.1101/2020.02.06.936971>.
Author: Robrecht Cannoodt [aut, cre, cph]
(<https://orcid.org/0000-0003-3641-729X>),
Wouter Saelens [aut] (<https://orcid.org/0000-0002-7114-6248>)
Maintainer: Robrecht Cannoodt <rcannood@gmail.com>
Diff between dyngen versions 1.0.0 dated 2021-02-23 and 1.0.1 dated 2021-04-12
dyngen-1.0.0/dyngen/R/rnorm_bounded.R |only dyngen-1.0.1/dyngen/DESCRIPTION | 6 dyngen-1.0.1/dyngen/MD5 | 31 + dyngen-1.0.1/dyngen/NAMESPACE | 2 dyngen-1.0.1/dyngen/NEWS.md | 5 dyngen-1.0.1/dyngen/R/4_kinetics.R | 157 +++++----- dyngen-1.0.1/dyngen/R/7_experiment.R | 6 dyngen-1.0.1/dyngen/R/caching.R | 8 dyngen-1.0.1/dyngen/R/package.R | 5 dyngen-1.0.1/dyngen/R/random_generators.R |only dyngen-1.0.1/dyngen/README.md | 3 dyngen-1.0.1/dyngen/build/vignette.rds |binary dyngen-1.0.1/dyngen/man/dyngen.Rd | 5 dyngen-1.0.1/dyngen/man/generate_kinetics.Rd | 5 dyngen-1.0.1/dyngen/man/rnorm_bounded.Rd | 2 dyngen-1.0.1/dyngen/man/runif_subrange.Rd |only dyngen-1.0.1/dyngen/tests/testthat/test-generate_dataset.R | 32 +- dyngen-1.0.1/dyngen/tests/testthat/test-generate_partitions.R | 2 18 files changed, 160 insertions(+), 109 deletions(-)
Title: Radiation Safety
Description: Provides functions for radiation safety, also known as
"radiation protection" and "radiological control". The science of
radiation protection is called "health physics" and its engineering
functions are called "radiological engineering". Functions in this
package cover many of the computations needed by radiation safety
professionals. Examples include: obtaining updated calibration and
source check values for radiation monitors to account for radioactive
decay in a reference source, simulating instrument readings to better
understand measurement uncertainty, correcting instrument readings
for geometry and ambient atmospheric conditions. Many of these
functions are described in Johnson and Kirby (2011, ISBN-13:
978-1609134198). Utilities are also included for developing inputs
and processing outputs with radiation transport codes, such as MCNP,
a general-purpose Monte Carlo N-Particle code that can be used for
neutron, photon, electron, or coupled neutron/photon/electron transport
(Werner et. al. (2018) <doi:10.2172/1419730>).
Author: Mark Hogue <mark.hogue.chp@gmail.com>
Maintainer: Mark Hogue <mark.hogue.chp@gmail.com>
Diff between radsafer versions 2.2.4 dated 2021-01-04 and 2.2.5 dated 2021-04-12
DESCRIPTION | 10 MD5 | 10 R/RN_info.R | 17 + build/vignette.rds |binary inst/doc/Introduction_to_radsafer.html | 364 +++++++-------------------------- man/RN_info.Rd | 2 6 files changed, 112 insertions(+), 291 deletions(-)
Title: Tools for Analyzing Cross-National Military Deployment and
Basing Data
Description: These functions generate data frames on troop deployments and military basing using U.S. Department of Defense data on overseas military deployments. This package provides functions for pulling country-year troop deployment and basing data. Subsequent versions will hopefully include cross-national data on deploying countries.
Author: Michael Flynn [aut, cre] (<https://orcid.org/0000-0002-6064-740X>)
Maintainer: Michael Flynn <meflynn@ksu.edu>
Diff between troopdata versions 0.1.2 dated 2021-03-02 and 0.1.3 dated 2021-04-12
DESCRIPTION | 8 +-- MD5 | 11 ++-- NEWS.md | 5 ++ R/get_troopdata.R | 4 - README.md | 74 +++++++++++++++++------------- data/troopdata.rda |binary man/figures/README-unnamed-chunk-10-1.png |only 7 files changed, 59 insertions(+), 43 deletions(-)
Title: Interface to the 'Microsoft 365' Suite of Cloud Services
Description: An interface to the 'Microsoft 365' (formerly known as 'Office 365') suite of cloud services, building on the framework supplied by the 'AzureGraph' package. Enables access from R to data stored in 'Teams', 'SharePoint Online' and 'OneDrive', including the ability to list drive folder contents, upload and download files, send messages, and retrieve data lists. Also provides a full-featured 'Outlook' email client, with the ability to send emails and manage emails and mail folders.
Author: Hong Ooi [aut, cre],
Microsoft [cph]
Maintainer: Hong Ooi <hongooi73@gmail.com>
Diff between Microsoft365R versions 2.0.0 dated 2021-02-26 and 2.1.0 dated 2021-04-12
DESCRIPTION | 10 ++-- MD5 | 58 ++++++++++++++++++---------- NAMESPACE | 6 ++ NEWS.md | 18 +++++++- R/Microsoft365R.R | 9 ++++ R/add_methods.R | 6 ++ R/build_email_request.R |only R/client.R | 28 ++++++++++++- R/make_email_attachments.R |only R/ms_drive.R | 7 +++ R/ms_drive_item.R | 13 +++--- R/ms_outlook.R |only R/ms_outlook_attachment.R |only R/ms_outlook_email.R |only R/ms_outlook_folder.R |only R/ms_outlook_object.R |only README.md | 43 +++++++++++++++++++- build/vignette.rds |binary inst/doc/auth.Rmd | 31 ++++++++++++-- inst/doc/auth.html | 40 +++++++++++++------ inst/doc/outlook.Rmd |only inst/doc/outlook.html |only man/client.Rd | 15 +++++++ man/ms_outlook.Rd |only man/ms_outlook_attachment.Rd |only man/ms_outlook_email.Rd |only man/ms_outlook_folder.Rd |only tests/testthat/test01_onedrive.R | 20 +++++++++ tests/testthat/test02_business_onedrive.R | 33 +++++++++++++-- tests/testthat/test03_sharepoint.R | 8 ++- tests/testthat/test04_teams.R | 9 ++-- tests/testthat/test04a_channel.R | 4 + tests/testthat/test05_outlook.R |only tests/testthat/test05a_outlook_folder.R |only tests/testthat/test05b_outlook_email.R |only tests/testthat/test05c_outlook_attachment.R |only tests/testthat/test05d_outlook_send.R |only tests/testthat/test05e_outlook_copymove.R |only vignettes/auth.Rmd | 31 ++++++++++++-- vignettes/outlook.Rmd |only 40 files changed, 317 insertions(+), 72 deletions(-)
Title: 'ggplot2' Based Plots with Statistical Details
Description: Extension of 'ggplot2', 'ggstatsplot' creates graphics with
details from statistical tests included in the plots themselves. It
provides an easier syntax to generate information-rich plots for
statistical analysis of continuous (violin plots, scatterplots,
histograms, dot plots, dot-and-whisker plots) or categorical (pie and
bar charts) data. Currently, it supports the most common types of
statistical approaches and tests: parametric, nonparametric, robust,
and Bayesian versions of t-test/ANOVA, correlation analyses,
contingency table analysis, meta-analysis, and regression analyses.
Author: Indrajeet Patil [cre, aut, cph]
(<https://orcid.org/0000-0003-1995-6531>, @patilindrajeets)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between ggstatsplot versions 0.7.1 dated 2021-03-11 and 0.7.2 dated 2021-04-12
ggstatsplot-0.7.1/ggstatsplot/build/ggstatsplot.pdf |only ggstatsplot-0.7.1/ggstatsplot/man/figures/README-ggbetweenstats3-1.png |only ggstatsplot-0.7.1/ggstatsplot/man/figures/README-ggpiestats3-1.png |only ggstatsplot-0.7.1/ggstatsplot/vignettes/web_only/gallery.Rmd |only ggstatsplot-0.7.2/ggstatsplot/DESCRIPTION | 20 ggstatsplot-0.7.2/ggstatsplot/LICENSE | 1348 - ggstatsplot-0.7.2/ggstatsplot/MD5 | 363 ggstatsplot-0.7.2/ggstatsplot/NAMESPACE | 230 ggstatsplot-0.7.2/ggstatsplot/NEWS.md | 2716 +- ggstatsplot-0.7.2/ggstatsplot/R/attach.R | 14 ggstatsplot-0.7.2/ggstatsplot/R/combine_plots.R | 150 ggstatsplot-0.7.2/ggstatsplot/R/data.R | 428 ggstatsplot-0.7.2/ggstatsplot/R/ggbarstats.R | 446 ggstatsplot-0.7.2/ggstatsplot/R/ggbetweenstats.R | 938 ggstatsplot-0.7.2/ggstatsplot/R/ggcoefstats.R | 986 ggstatsplot-0.7.2/ggstatsplot/R/ggcorrmat.R | 557 ggstatsplot-0.7.2/ggstatsplot/R/ggdotplotstats.R | 386 ggstatsplot-0.7.2/ggstatsplot/R/gghistostats.R | 414 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Title: Wrangle Campaign Finance Data
Description: Explore and normalize American campaign finance
data. Created by the Investigative Reporting Workshop to facilitate
work on The Accountability Project, an effort to collect public data
into a central, standard database that is more easily searched:
<https://publicaccountability.org/>.
Author: Kiernan Nicholls [aut, cre, cph],
Investigative Reporting Workshop [cph],
Yanqi Xu [aut],
Schuyler Erle [cph]
Maintainer: Kiernan Nicholls <kiernann@protonmail.com>
Diff between campfin versions 1.0.6 dated 2021-03-04 and 1.0.7 dated 2021-04-12
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 5 +++++ R/use-diary.R | 5 +++-- build/vignette.rds |binary inst/doc/normalize-geography.html | 10 +++++----- inst/templates/template_diary.Rmd | 2 +- tests/testthat/test-non-ascii.R | 25 +++++++++++++++---------- 8 files changed, 39 insertions(+), 28 deletions(-)
Title: Predictive Data Analysis System
Description: Perform a supervised data analysis on a database through a 'shiny' graphical interface. It includes methods such as K-Nearest Neighbors, Decision Trees, ADA Boosting, Extreme Gradient Boosting, Random Forest, Neural Networks, Deep Learning, Support Vector Machines and Bayesian Methods.
Author: Oldemar Rodriguez [aut, cre],
Andrés Navarro [ctb, prg],
Diego Jiménez [ctb, prg],
Joseline Quirós [ctb, prg]
Maintainer: Oldemar Rodriguez <oldemar.rodriguez@ucr.ac.cr>
Diff between predictoR versions 1.1.7 dated 2021-03-04 and 1.1.9 dated 2021-04-12
DESCRIPTION | 30 ++++++---- MD5 | 8 +- inst/application/global.R | 95 +++++++++----------------------- inst/application/server.R | 135 +++++++++++++++++++--------------------------- inst/application/ui.R | 21 ++----- 5 files changed, 113 insertions(+), 176 deletions(-)
Title: Lattice Options and Add-Ins
Description: Various plots and functions that make use of the lattice/trellis plotting framework.
The plots, which include loaPlot(), RgoogleMapsPlot() and trianglePlot(), use panelPal(), a function that
extends 'lattice' and 'hexbin' package methods to automate plot subscript and panel-to-panel
and panel-to-key synchronization/management.
Author: Karl Ropkins
Maintainer: Karl Ropkins <karl.ropkins@gmail.com>
Diff between loa versions 0.2.46.3 dated 2021-01-16 and 0.2.47.1 dated 2021-04-12
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS | 7 +++++++ R/cond.handlers.R | 3 +-- R/formulaHandler.R | 19 ++++++++++++++++--- R/loaPlot.R | 24 +++++++++++++++--------- R/panelPal.R | 2 +- R/plot.argument.handlers.R | 3 ++- man/loa-package.Rd | 4 ++-- 9 files changed, 56 insertions(+), 30 deletions(-)
Title: Generalised Joint Regression Modelling
Description: Routines for fitting various joint (and univariate) regression models, with several types of covariate effects, in the presence of equations' errors association, endogeneity, non-random sample selection or partial observability.
Author: Giampiero Marra <giampiero.marra@ucl.ac.uk> and Rosalba Radice <rosalba.radice@city.ac.uk>
Maintainer: Giampiero Marra <giampiero.marra@ucl.ac.uk>
Diff between GJRM versions 0.2-3 dated 2020-09-07 and 0.2-4 dated 2021-04-12
ChangeLog | 4 DESCRIPTION | 6 MD5 | 149 - NAMESPACE | 3 R/BCDF.r | 4 R/BiCDF.r | 19 R/Cop1Cop2.r | 9 R/CopulaCLM.r | 31 R/SemiParBIV.r | 62 R/ass.dp.r | 29 R/ass.ms.r | 29 R/bCopulaCLMgHsCont.R | 13 R/bcont.R | 4 R/bcont23.R | 2 R/bcont3.R | 2 R/bcont32.R | 2 R/bcontROB.R | 6 R/bcontSurv.R | 14 R/bcontSurvG.R | 4 R/bcontSurvGDep.R | 4 R/bcontSurvGDepA.R | 4 R/bcontSurvGcont2Surv.R | 4 R/bcontSurvGunivMIXED_ExcessHazard_LeftTruncation.R |only R/bcontSurvGunivMIXED_LeftTruncation.R | 149 - R/bdiscrcont.R | 10 R/bdiscrcont12.R | 10 R/bdiscrcont13.R | 2 R/bdiscrcont23.R | 2 R/bdiscrdiscr.R | 2 R/bdiscrdiscr11.R | 2 R/bdiscrdiscr12.R | 2 R/bprobgHs.r | 7 R/bprobgHsCont.r | 6 R/bprobgHsCont3.r | 2 R/bprobgHsCont3binTW.r | 2 R/bprobgHsContSS.r | 2 R/bprobgHsDiscr1.r | 2 R/bprobgHsDiscr2.r | 2 R/bprobgHsSS.r | 4 R/bprobgHstwoParC.r | 4 R/copgHs.r | 142 + R/copgHs2.r | 22 R/copgHs3.r | 72 R/copgHsAT.r | 40 R/copgHsCond.r | 26 R/copgHsCont.r | 1677 +++++++++++++++++++- R/copulaSampleSel.r | 15 R/distrHs.r | 98 - R/distrHsAT.r | 24 R/enu.tr.R | 24 R/esp.tr.R | 37 R/gamlss.R | 64 R/gjrm.r | 23 R/hazsurv.plot.r | 831 +++++---- R/jc.probs1.r | 2 R/jc.probs2.r | 2 R/jc.probs3.r | 2 R/jc.probs4.r | 2 R/jc.probs5.r | 2 R/jc.probs7.r | 2 R/pp.r | 18 R/pream.wm.r | 21 R/print.SemiParBIV.r | 7 R/print.copulaSampleSel.r | 7 R/print.gamlss.r | 6 R/pscr.r | 27 R/r.resp.R | 4 R/resp.check.R | 7 R/sim.resp.R | 4 R/survExcInd.r | 18 R/susutsn.r | 2 R/teta.tr.R | 6 man/GJRM-package.Rd | 17 man/bprobgHsContUniv.Rd | 1 man/gjrm.Rd | 10 man/hazsurv.plot.Rd | 181 +- 76 files changed, 3084 insertions(+), 973 deletions(-)
Title: The 'Tidymodels' Extension for GARCH Models
Description: Garch framework for use with the 'tidymodels' ecosystem. It includes both univariate and
multivariate methods from the 'rugarch' and 'rmgarch' packages. These models include DCC-Garch, Copula Garch
and Go-GARCH among others.
Author: Alberto Almuiña [aut, cre]
Maintainer: Alberto Almuiña <albertogonzalezalmuinha@gmail.com>
Diff between garchmodels versions 0.1.0 dated 2021-04-10 and 0.1.1 dated 2021-04-12
DESCRIPTION | 8 ++-- MD5 | 22 ++++++----- NEWS.md | 12 +++++- R/parsnip-garch_reg.R | 57 ++++++++++++++++++++--------- R/parsnip-garch_reg_data.R | 8 ++++ README.md | 10 +++-- build/vignette.rds |binary inst/doc/getting-started.html | 16 ++++---- inst/doc/tuning_univariate_algorithms.R |only inst/doc/tuning_univariate_algorithms.Rmd |only inst/doc/tuning_univariate_algorithms.html |only man/garch_reg.Rd | 14 ++++--- man/rugarch_fit_impl.Rd | 3 + vignettes/tuning_univariate_algorithms.Rmd |only 14 files changed, 102 insertions(+), 48 deletions(-)
Title: Fast Wild Cluster Bootstrap Inference for Linear Regression
Models
Description: Implementation of the fast algorithm for wild cluster bootstrap
inference developed in Roodman et al (2019, STATA Journal) for
linear regression models
<https://journals.sagepub.com/doi/full/10.1177/1536867X19830877>,
which makes it feasible to quickly calculate bootstrap test
statistics based on a large number of bootstrap draws even for
large samples - as long as the number of bootstrapping clusters
is not too large. Multiway clustering, regression weights,
bootstrap weights, fixed effects and subcluster bootstrapping
are supported. Further, both restricted (WCR) and unrestricted
(WCU) bootstrap are supported. Methods are provided for a variety
of fitted models, including 'lm()', 'feols()'
(from package 'fixest') and 'felm()' (from package 'lfe').
Author: Alexander Fischer [aut, cre],
David Roodman [aut],
Achim Zeileis [ctb] (Author of included sandwich fragments),
Nathaniel Graham [ctb] (Contributor to included sandwich fragments),
Susanne Koell [ctb] (Contributor to included sandwich fragments),
Laurent Berge [ctb] (Author of included fixest fragments),
Sebastian Krantz [ctb]
Maintainer: Alexander Fischer <alexander-fischer1801@t-online.de>
Diff between fwildclusterboot versions 0.3.2 dated 2021-02-26 and 0.3.3 dated 2021-04-12
DESCRIPTION | 10 +++--- MD5 | 33 ++++++++++---------- NAMESPACE | 1 NEWS.md | 4 +- R/boot_algo2.R | 51 +++++++++++++++++++++++-------- R/boottest_felm.R | 31 ++++++------------ R/boottest_fixest.R | 30 ++++++------------ R/boottest_lm.R | 27 ++++------------ R/create_data.R | 2 - R/invert_p_val2.R | 36 +++++++++++++++++---- README.md | 20 +++++------- inst/CITATION |only inst/doc/fwildclusterboot.html | 43 +++++++++++++++----------- inst/tinytest/test_error_warning.R | 7 +++- man/boot_algo2.Rd | 11 ++++-- man/boottest.felm.Rd | 2 - man/boottest.lm.Rd | 2 - man/figures/README-unnamed-chunk-4-1.png |binary 18 files changed, 172 insertions(+), 138 deletions(-)
More information about fwildclusterboot at CRAN
Permanent link
Title: Date-Time Types and Tools
Description: Provides a comprehensive library for date-time manipulations
using a new family of orthogonal date-time classes (durations, time
points, zoned-times, and calendars) that partition responsibilities so
that the complexities of time zones are only considered when they are
really needed. Capabilities include: date-time parsing, formatting,
arithmetic, extraction and updating of components, and rounding.
Author: Davis Vaughan [aut, cre],
Howard Hinnant [cph] (Author of the included date library),
RStudio [cph, fnd]
Maintainer: Davis Vaughan <davis@rstudio.com>
Diff between clock versions 0.1.0 dated 2021-03-31 and 0.2.0 dated 2021-04-12
DESCRIPTION | 8 MD5 | 97 +++-- NAMESPACE | 15 NEWS.md |only R/date.R | 357 ++++++++++++++-------- R/duration.R | 3 R/naive-time.R | 2 R/posixt.R | 270 ++++++++++++++++ R/sys-time.R | 6 R/utils.R | 63 +++ R/zoned-time.R | 15 inst/doc/clock.html | 28 + inst/doc/faq.R | 26 + inst/doc/faq.Rmd | 44 ++ inst/doc/faq.html | 225 ++++++++----- inst/include/clock |only man/as-zoned-time-Date.Rd | 97 +++++ man/as_date.Rd |only man/as_date_time.Rd |only man/as_duration.Rd | 2 man/as_sys_time.Rd | 4 man/as_zoned_time.Rd | 2 man/date-formatting.Rd |only man/date-time-parse.Rd | 28 + man/date-today.Rd |only man/date-zone.Rd | 23 - man/date_format.Rd | 160 --------- man/date_parse.Rd | 33 +- man/format.clock_zoned_time.Rd | 15 man/posixt-formatting.Rd |only src/cpp11.cpp | 3 src/duration.cpp | 5 src/exported.cpp |only src/failure.h |only src/format.cpp | 15 src/gregorian-year-month-day.cpp | 37 +- src/parse.h | 54 --- src/time-point.cpp | 13 src/zoned-time.cpp | 25 - tests/testthat/_snaps/date.md | 45 ++ tests/testthat/_snaps/gregorian-year-day.md | 3 tests/testthat/_snaps/gregorian-year-month-day.md | 3 tests/testthat/_snaps/naive-time.md | 58 +++ tests/testthat/_snaps/posixt.md | 52 ++- tests/testthat/_snaps/sys-time.md | 10 tests/testthat/helper-format.R | 17 - tests/testthat/test-date.R | 163 +++++++++- tests/testthat/test-gregorian-year-month-day.R | 18 + tests/testthat/test-naive-time.R | 56 +++ tests/testthat/test-posixt.R | 108 ++++++ tests/testthat/test-sys-time.R | 17 + tests/testthat/test-time-point.R | 16 tests/testthat/test-zoned-time.R | 28 + vignettes/faq.Rmd | 44 ++ 54 files changed, 1690 insertions(+), 623 deletions(-)
Title: US Baby Names 1880-2017
Description: US baby names provided by the SSA. This package contains all
names used for at least 5 children of either sex.
Author: Hadley Wickham [aut, cre],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between babynames versions 1.0.0 dated 2019-01-12 and 1.0.1 dated 2021-04-12
babynames-1.0.0/babynames/data/datalist |only babynames-1.0.0/babynames/tests/testthat/test-data_applicants_first_last.txt |only babynames-1.0.0/babynames/tests/testthat/test-data_babynames_first_last.txt |only babynames-1.0.0/babynames/tests/testthat/test-data_babynames_first_last_1990.txt |only babynames-1.0.0/babynames/tests/testthat/test-data_births_first_last.txt |only babynames-1.0.0/babynames/tests/testthat/test-data_lifetables_first_last.txt |only babynames-1.0.0/babynames/tests/testthat/test-data_lifetables_first_last_1990s.txt |only babynames-1.0.1/babynames/DESCRIPTION | 30 ++-- babynames-1.0.1/babynames/MD5 | 26 +-- babynames-1.0.1/babynames/NEWS.md | 4 babynames-1.0.1/babynames/R/data.R | 2 babynames-1.0.1/babynames/README.md | 4 babynames-1.0.1/babynames/man/applicants.Rd | 6 babynames-1.0.1/babynames/man/babynames.Rd | 6 babynames-1.0.1/babynames/man/births.Rd | 6 babynames-1.0.1/babynames/man/lifetables.Rd | 6 babynames-1.0.1/babynames/tests/testthat/_snaps |only babynames-1.0.1/babynames/tests/testthat/test-data.R | 71 ++-------- 18 files changed, 67 insertions(+), 94 deletions(-)
Title: Apply Sojourn Methods for Processing ActiGraph Accelerometer
Data
Description: Provides a simple way for utilizing Sojourn methods for
accelerometer processing, as detailed in Lyden K, Keadle S,
Staudenmayer J, & Freedson P (2014) <doi:10.1249/MSS.0b013e3182a42a2d>,
Ellingson LD, Schwabacher IJ, Kim Y, Welk GJ, & Cook DB (2016)
<doi:10.1249/MSS.0000000000000915>, and Hibbing PR, Ellingson LD,
Dixon PM, & Welk GJ (2018) <doi:10.1249/MSS.0000000000001486>. The
accompanying Sojourn.Data package, if not available on CRAN, can
be accessed from <https://github.com/paulhibbing/Sojourn.Data>.
Author: Paul R. Hibbing [aut, cre],
Kate Lyden [aut],
Isaac J. Schwabacher [aut]
Maintainer: Paul R. Hibbing <paulhibbing@gmail.com>
Diff between Sojourn versions 0.1.0 dated 2019-05-06 and 1.0.2 dated 2021-04-12
DESCRIPTION | 22 +++---- MD5 | 67 +++++++++++---------- NEWS.md | 13 ++++ R/RcppExports.R |only R/SIP_Functions.R | 11 +-- R/SIP_Soj_3x.R | 13 ++-- R/Sojourn.R | 1 R/Utils.R | 4 - R/compute_bouts_info.R | 2 R/read_AP.R | 6 + R/soj_1x_original.R | 17 ++--- R/soj_3x_original.R | 138 +++++++++++++++++++++++---------------------- R/youth_apply_sojourn.R | 19 +++--- R/youth_get_sojourns.R | 15 ++-- R/youth_sojourn_tree.R | 131 +++++++++++++++++++++++++----------------- README.md | 13 ++-- man/SIP_ag.Rd | 6 + man/SIP_ap.Rd | 6 + man/Sojourn.Rd | 1 man/acf.lag1.alt.Rd | 2 man/apply_youth_sojourn.Rd | 18 +++-- man/compute.bouts.info.Rd | 2 man/enhance_actigraph.Rd | 4 - man/example_data.Rd | 6 + man/find.transitions.Rd | 2 man/get_youth_sojourns.Rd | 15 +++- man/prep.nnetinputs.Rd | 2 man/read_AP.Rd | 6 + man/replace.na.Rd | 2 man/soj_1x_original.Rd | 21 ++++-- man/soj_3x_original.Rd | 4 - man/sojourn_3x_SIP.Rd | 8 +- man/youth_name_test.Rd | 9 ++ man/youth_network_shape.Rd | 14 +++- man/youth_sojourn_tree.Rd | 10 ++- 35 files changed, 357 insertions(+), 253 deletions(-)
Title: Visualization of Spatial and Spatio-Temporal Objects in Google
Earth
Description: Writes sp-class, spacetime-class, raster-class and similar spatial and spatio-temporal objects to KML following some basic cartographic rules.
Author: Tomislav Hengl [cre, aut],
Andrea Gilardi [ctb],
Pierre Roudier [ctb],
Dylan Beaudette [ctb],
Edzer Pebesma [ctb],
Michael Blaschek [ctb]
Maintainer: Tomislav Hengl <tom.hengl@opengeohub.org>
Diff between plotKML versions 0.6-1 dated 2020-03-09 and 0.8-0 dated 2021-04-12
.Rinstignore |only DESCRIPTION | 40 - MD5 | 153 ++--- NAMESPACE | 108 +-- R/AAA-classes.R | 378 ++++++------- R/AAAA.R | 608 ++++++++++----------- R/ZZZ.R | 2 R/aesthetics.R | 252 ++++++--- R/altitude.R | 12 R/attributes.R | 52 + R/export_metadata.R | 2 R/getWikiMedia.ImageInfo.R | 4 R/kml.tiles.R | 8 R/layer-sf.R |only R/layer.Raster.R | 12 R/layer.RasterBrick.R | 11 R/layer.SpatialPixels.R | 12 R/legend.bar.R | 16 R/legend.whitening.R | 14 R/plotKML-sf.R |only R/plotKML-stars.R |only R/plotKML.GDALobj.R | 6 R/plotKML.SpatialPredictions.R | 192 +++--- R/readGPX.R | 2 R/spPhoto.R | 2 R/vect2rast.R | 12 build/partial.rdb |only build/vignette.rds |binary data/datalist | 38 - data/eberg_contours.rda |binary data/eberg_zones.rda |binary demo/plotKML.R | 50 - inst/CITATION | 4 inst/doc/jss1079.R | 285 ++++------ inst/doc/jss1079.Rnw | 29 - inst/doc/jss1079.pdf |binary inst/sf_stars_examples.R |only man/HRprec08.Rd | 4 man/HRtemp08.Rd | 2 man/LST.Rd | 2 man/SAGA_pal.Rd | 10 man/SpatialMaxEntOutput.Rd | 2 man/SpatialPhotoOverlay.Rd | 2 man/SpatialPredictions.Rd | 72 +- man/SpatialSamplingPattern.Rd | 2 man/baranja.Rd | 182 +++--- man/bigfoot.Rd | 124 ++-- man/check_projection.Rd | 2 man/eberg.Rd | 8 man/geopath.rd | 77 +- man/getWikimedia.Rd | 11 man/gpxbtour.Rd | 2 man/kml.tiles.Rd | 96 +-- man/kml_compress.Rd | 88 +-- man/kml_layer.Rd | 145 +++-- man/kml_legend.bar.Rd | 2 man/kml_screen.Rd | 2 man/layer.Raster.Rd | 2 man/layer.STIDF.Rd | 2 man/layer.STTDF.Rd | 2 man/layer.SpatialLines.Rd | 84 +-- man/layer.SpatialPhotoOverlay.Rd | 2 man/layer.SpatialPixels.Rd | 2 man/legend.whitening.Rd | 4 man/metadata2SLD.Rd | 2 man/metadata2SLD.SpatialPixels.Rd | 4 man/normalizeFilename.Rd | 2 man/plotKML-package.Rd | 4 man/plotKML.GDALobj.Rd | 104 +-- man/plotKML.Rd | 1051 ++++++++++++++++++-------------------- man/plotKML.env.Rd | 8 man/readGPX.Rd | 62 +- man/readKML.GBIFdensity.Rd | 4 man/reproject.Rd | 6 man/spMetadata.Rd | 2 man/spPhoto.Rd | 10 man/vect2rast.Rd | 8 man/whitening.Rd | 6 tests |only vignettes/jss1079.Rnw | 29 - vignettes/jss1079.bib | 12 81 files changed, 2387 insertions(+), 2164 deletions(-)
Title: Flights that Departed NYC in 2013
Description: Airline on-time data for all flights departing NYC in 2013.
Also includes useful 'metadata' on airlines, airports, weather, and
planes.
Author: Hadley Wickham [aut, cre],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between nycflights13 versions 1.0.1 dated 2019-09-16 and 1.0.2 dated 2021-04-12
nycflights13-1.0.1/nycflights13/data/datalist |only nycflights13-1.0.2/nycflights13/DESCRIPTION | 17 +++++++++-------- nycflights13-1.0.2/nycflights13/MD5 | 21 ++++++++++----------- nycflights13-1.0.2/nycflights13/NEWS.md | 4 ++++ nycflights13-1.0.2/nycflights13/R/airport.R | 2 +- nycflights13-1.0.2/nycflights13/R/planes.R | 2 +- nycflights13-1.0.2/nycflights13/R/weather.R | 2 +- nycflights13-1.0.2/nycflights13/man/airlines.Rd | 6 ++++-- nycflights13-1.0.2/nycflights13/man/airports.Rd | 8 +++++--- nycflights13-1.0.2/nycflights13/man/flights.Rd | 6 ++++-- nycflights13-1.0.2/nycflights13/man/planes.Rd | 8 +++++--- nycflights13-1.0.2/nycflights13/man/weather.Rd | 6 ++++-- 12 files changed, 48 insertions(+), 34 deletions(-)
Title: Interval and Enum-Type Representation of Vectors
Description: Enum-type representation of vectors and representation
of intervals, including a method of coercing variables in data frames.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between inum versions 1.0-3 dated 2021-02-08 and 1.0-4 dated 2021-04-12
DESCRIPTION | 8 +- MD5 | 10 +- R/inum.R | 6 + inst/NEWS.Rd | 8 ++ tests/bugfixes.R | 27 ++++++++ tests/bugfixes.Rout.save | 157 ++++++++++++++++++++++++++++++++++++++++++++++- 6 files changed, 203 insertions(+), 13 deletions(-)
Title: Geographically-Weighted Models
Description: Techniques from a particular branch of spatial statistics,termed geographically-weighted (GW) models. GW models suit situations when data are not described well by some global model, but where there are spatial regions where a suitably localised calibration provides a better description. 'GWmodel' includes functions to calibrate: GW summary statistics (Brunsdon et al., 2002)<doi: 10.1016/s0198-9715(01)00009-6>, GW principal components analysis (Harris et al., 2011)<doi: 10.1080/13658816.2011.554838>, GW discriminant analysis (Brunsdon et al., 2007)<doi: 10.1111/j.1538-4632.2007.00709.x> and various forms of GW regression (Brunsdon et al., 1996)<doi: 10.1111/j.1538-4632.1996.tb00936.x>; some of which are provided in basic and robust (outlier resistant) forms.
Author: Binbin Lu[aut], Paul Harris[aut], Martin Charlton[aut], Chris Brunsdon[aut], Tomoki Nakaya[aut], Daisuke Murakami[aut],Isabella Gollini[ctb], Yigong Hu[ctb], Fiona H Evans[ctb]
Maintainer: Binbin Lu <binbinlu@whu.edu.cn>
Diff between GWmodel versions 2.2-4 dated 2021-02-17 and 2.2-5 dated 2021-04-12
DESCRIPTION | 8 - MD5 | 14 +- R/RcppExports.R | 61 ++++++++++- R/gwr.basic.r | 4 R/zzz.r | 2 man/GWmodel-package.Rd | 4 src/GWmodel.cpp | 266 +++++++------------------------------------------ src/RcppExports.cpp | 20 +-- 8 files changed, 124 insertions(+), 255 deletions(-)
Title: The Full Bayesian Evidence Test, Full Bayesian Significance Test
and the e-Value
Description: Provides access to a range of functions for computing and visualizing the Full Bayesian Significance Test (FBST) and the e-value for testing a sharp hypothesis against its alternative, and the Full Bayesian Evidence Test (FBET) and the (generalized) Bayesian evidence value for testing a composite (or interval) hypothesis against its alternative. The methods are widely applicable as long as a posterior MCMC sample is available. For details on the computation and theory of the FBST see <arXiv:2005.13181>.
Author: Riko Kelter
Maintainer: Riko Kelter <riko.kelter@uni-siegen.de>
Diff between fbst versions 1.4 dated 2021-03-09 and 1.5 dated 2021-04-12
fbst-1.4/fbst/inst/doc/fbet-vignette.R |only fbst-1.4/fbst/inst/doc/fbet-vignette.Rmd |only fbst-1.4/fbst/inst/doc/fbet-vignette.html |only fbst-1.4/fbst/inst/doc/my-vignette.R |only fbst-1.4/fbst/inst/doc/my-vignette.Rmd |only fbst-1.4/fbst/inst/doc/my-vignette.html |only fbst-1.4/fbst/vignettes/fbet-vignette.Rmd |only fbst-1.4/fbst/vignettes/my-vignette.Rmd |only fbst-1.5/fbst/DESCRIPTION | 10 +-- fbst-1.5/fbst/MD5 | 26 ++++---- fbst-1.5/fbst/R/fbst.R | 96 +++++++++++++++--------------- fbst-1.5/fbst/build/partial.rdb |binary fbst-1.5/fbst/build/vignette.rds |binary fbst-1.5/fbst/inst/doc/fbet.R |only fbst-1.5/fbst/inst/doc/fbet.Rmd |only fbst-1.5/fbst/inst/doc/fbet.html |only fbst-1.5/fbst/inst/doc/fbst.R |only fbst-1.5/fbst/inst/doc/fbst.Rmd |only fbst-1.5/fbst/inst/doc/fbst.html |only fbst-1.5/fbst/vignettes/fbet.Rmd |only fbst-1.5/fbst/vignettes/fbst.Rmd |only fbst-1.5/fbst/vignettes/library.bib | 25 +++++++ 22 files changed, 94 insertions(+), 63 deletions(-)
Title: Create, Modify and Analyse Phylogenetic Trees
Description: Efficient implementations of functions for the creation,
modification and analysis of phylogenetic trees.
Applications include:
generation of trees with specified shapes;
analysis of tree shape;
rooting of trees and extraction of subtrees;
calculation and depiction of node support;
calculation of ancestor-descendant relationships;
import and export of trees from Newick, Nexus (Maddison et al. 1997)
<doi:10.1093/sysbio/46.4.590>,
and TNT <http://www.lillo.org.ar/phylogeny/tnt/> formats;
and analysis of splits and cladistic information.
Author: Martin R. Smith [aut, cre, cph]
(<https://orcid.org/0000-0001-5660-1727>),
Emmanuel Paradis [cph] (<https://orcid.org/0000-0003-3092-2199>)
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between TreeTools versions 1.4.2 dated 2021-01-26 and 1.4.3 dated 2021-04-12
DESCRIPTION | 6 +- MD5 | 82 +++++++++++++++++---------------- NAMESPACE | 10 ++++ NEWS.md | 12 ++++ R/ArtificialExtinction.R | 10 ++-- R/Information.R | 24 ++++----- R/Splits.R | 2 R/Support.R | 10 +++- R/TreeNumber.R | 11 ++-- R/as.multiPhylo.R |only R/helper_functions.R | 8 ++- R/parse_files.R | 65 +++++++++++++++++++------- R/phylo.R | 42 +++++++++++++--- R/tree_display.R | 24 ++++++++- R/tree_information.R | 9 +++ R/tree_numbering.R | 28 ++++++----- R/tree_rearrangement.R | 19 +++++-- build/partial.rdb |binary build/vignette.rds |binary inst/doc/filesystem-navigation.html | 13 ++++- inst/doc/load-data.html | 13 ++++- inst/doc/load-trees.Rmd | 2 inst/doc/load-trees.html | 21 +++++--- man/AddTip.Rd | 10 ++++ man/CladisticInfo.Rd | 5 ++ man/LabelSplits.Rd | 5 +- man/ReadCharacters.Rd | 37 ++++++++++++-- man/RootTree.Rd | 8 ++- man/SortTree.Rd | 16 +++++- man/TreeNumber.Rd | 7 -- man/TreesMatchingSplit.Rd | 6 +- man/UnshiftTree.Rd | 8 ++- man/as.multiPhylo.Rd |only man/figures/Stemwardness.png |binary tests/testthat/Rplots.pdf |only tests/testthat/test-TreeNumber.R | 7 ++ tests/testthat/test-as.multiPhylo.R |only tests/testthat/test-helper_functions.R | 5 +- tests/testthat/test-information.R | 6 ++ tests/testthat/test-phylo.R | 22 ++++++++ tests/testthat/test-tree_display.R | 9 +++ tests/testthat/test-tree_information.R | 5 ++ tests/testthat/test-tree_rearrange.R | 48 ++++++++++++++++--- vignettes/load-trees.Rmd | 2 44 files changed, 455 insertions(+), 162 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-09-14 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-27 0.0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-25 0.1.1
2020-02-29 0.1.0
Title: Tidy Temporal Data Frames and Tools
Description: Provides a 'tbl_ts' class (the 'tsibble') for
temporal data in an data- and model-oriented format. The 'tsibble'
provides tools to easily manipulate and analyse temporal data, such as
filling in time gaps and aggregating over calendar periods.
Author: Earo Wang [aut, cre] (<https://orcid.org/0000-0001-6448-5260>),
Di Cook [aut, ths] (<https://orcid.org/0000-0002-3813-7155>),
Rob Hyndman [aut, ths] (<https://orcid.org/0000-0002-2140-5352>),
Mitchell O'Hara-Wild [aut] (<https://orcid.org/0000-0001-6729-7695>),
Tyler Smith [ctb],
Wil Davis [ctb]
Maintainer: Earo Wang <earo.wang@gmail.com>
Diff between tsibble versions 1.0.0 dated 2021-02-20 and 1.0.1 dated 2021-04-12
DESCRIPTION | 6 +++--- MD5 | 26 +++++++++++++------------- NAMESPACE | 1 + NEWS.md | 4 ++++ R/as-tsibble.R | 2 +- R/utils.R | 9 +++++++++ R/yearmonth.R | 27 ++++++++++++++------------- build/tsibble.pdf |binary build/vignette.rds |binary inst/doc/faq.html | 10 +++++++++- inst/doc/implicit-na.html | 12 ++++++++++-- inst/doc/intro-tsibble.html | 10 +++++++++- man/year-month.Rd | 4 +++- tests/testthat/test-yearmonth.R | 4 ++++ 14 files changed, 80 insertions(+), 35 deletions(-)
Title: Mandallaz' Model-Assisted Small Area Estimators
Description: An S4 implementation of the unbiased extension of
the model- assisted synthetic-regression estimator proposed by
Mandallaz (2013) <DOI:10.1139/cjfr-2012-0381>, Mandallaz et al. (2013)
<DOI:10.1139/cjfr-2013-0181> and Mandallaz (2014)
<DOI:10.1139/cjfr-2013-0449>. It yields smaller variances than the
standard bias correction, the generalised regression estimator.
Author: Andreas Dominik Cullmann [aut, cre],
Daniel Mandallaz [ctb],
Alexander Francis Massey [ctb]
Maintainer: Andreas Dominik Cullmann <fvafrcu@mailbox.org>
Diff between maSAE versions 2.0.2 dated 2020-11-02 and 2.0.3 dated 2021-04-12
maSAE-2.0.2/maSAE/inst/doc/A_Taxonomy_of_Estimators.pdf |only maSAE-2.0.2/maSAE/inst/doc/A_Taxonomy_of_Estimators.tex |only maSAE-2.0.2/maSAE/inst/doc/forestinventory_and_maSAE.R |only maSAE-2.0.2/maSAE/inst/doc/forestinventory_and_maSAE.Rmd |only maSAE-2.0.2/maSAE/inst/doc/forestinventory_and_maSAE.html |only maSAE-2.0.2/maSAE/vignettes/A_Taxonomy_of_Estimators.tex |only maSAE-2.0.2/maSAE/vignettes/forestinventory_and_maSAE.Rmd |only maSAE-2.0.2/maSAE/vignettes/tex |only maSAE-2.0.3/maSAE/DESCRIPTION | 6 - maSAE-2.0.3/maSAE/MD5 | 63 ++++++++++---- maSAE-2.0.3/maSAE/NEWS.md | 4 maSAE-2.0.3/maSAE/R/allClasses.R | 2 maSAE-2.0.3/maSAE/R/maSAE-package.R | 6 - maSAE-2.0.3/maSAE/README.md | 7 - maSAE-2.0.3/maSAE/build/partial.rdb |only maSAE-2.0.3/maSAE/build/vignette.rds |binary maSAE-2.0.3/maSAE/inst/compare_to_forestinventory |only maSAE-2.0.3/maSAE/inst/doc/maSAE.pdf |binary maSAE-2.0.3/maSAE/inst/old_doc |only maSAE-2.0.3/maSAE/man/maSAE-package.Rd | 6 - maSAE-2.0.3/maSAE/man/saeObj-class.Rd | 2 21 files changed, 64 insertions(+), 32 deletions(-)
Title: Explore and Visualize Your Data Interactively
Description: A 'shiny' gadget to create 'ggplot2' figures interactively with drag-and-drop to map your variables to different aesthetics.
You can quickly visualize your data accordingly to their type, export in various formats,
and retrieve the code to reproduce the plot.
Author: Fanny Meyer [aut],
Victor Perrier [aut, cre],
Ian Carroll [ctb] (Faceting support),
Xiangnan Dang [ctb] (Facets rows and cols, X/Y limits)
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between esquisse versions 0.3.1 dated 2020-09-27 and 1.0.0 dated 2021-04-12
esquisse-0.3.1/esquisse/R/geoms.R |only esquisse-0.3.1/esquisse/R/module-chartControls.R |only esquisse-0.3.1/esquisse/R/module-chooseData.R |only esquisse-0.3.1/esquisse/R/module-coerce.R |only esquisse-0.3.1/esquisse/R/module-data-globalenv.R |only esquisse-0.3.1/esquisse/R/module-data-import-file.R |only esquisse-0.3.1/esquisse/R/module-filterDF.R |only esquisse-0.3.1/esquisse/R/module-select.R |only esquisse-0.3.1/esquisse/R/run_module.R |only esquisse-0.3.1/esquisse/inst/assets/shiny-utils.js |only esquisse-0.3.1/esquisse/inst/assets/styles-dad.css |only esquisse-0.3.1/esquisse/inst/assets/styles.css |only esquisse-0.3.1/esquisse/inst/modules-examples |only esquisse-0.3.1/esquisse/vignettes/figures/controls-filter.png |only esquisse-0.3.1/esquisse/vignettes/figures/controls-labs.png |only esquisse-0.3.1/esquisse/vignettes/figures/controls-plot-bar.png |only esquisse-0.3.1/esquisse/vignettes/figures/controls-plot-scatter.png |only esquisse-0.3.1/esquisse/vignettes/figures/create-chart-geom.png |only esquisse-0.3.1/esquisse/vignettes/figures/create-chart.png |only esquisse-0.3.1/esquisse/vignettes/figures/main-panel.png |only esquisse-0.3.1/esquisse/vignettes/figures/module-chooseData.png |only esquisse-0.3.1/esquisse/vignettes/figures/module-chooseData2.png |only esquisse-0.3.1/esquisse/vignettes/figures/module-coerce.png |only esquisse-0.3.1/esquisse/vignettes/figures/module-filterDF.png |only esquisse-0.3.1/esquisse/vignettes/figures/select-data-detail.png |only esquisse-0.3.1/esquisse/vignettes/figures/select-data.png |only esquisse-0.3.1/esquisse/vignettes/figures/shiny-esquisse-out.png |only esquisse-1.0.0/esquisse/DESCRIPTION | 21 esquisse-1.0.0/esquisse/MD5 | 167 +-- esquisse-1.0.0/esquisse/NAMESPACE | 48 esquisse-1.0.0/esquisse/NEWS.md | 15 esquisse-1.0.0/esquisse/R/default-options.R | 68 - 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Title: Methods for Analysing 'EQ-5D' Data and Calculating 'EQ-5D' Index
Scores
Description: EQ-5D is a popular health related quality of life instrument used
in the clinical and economic evaluation of health care. Developed by the
EuroQol group <https://euroqol.org/>, the instrument consists of two
components: health state description and evaluation. For the description
component a subject self-rates their health in terms of five dimensions;
mobility, self-care, usual activities, pain/discomfort, and
anxiety/depression using either a three-level (EQ-5D-3L,
<https://euroqol.org/eq-5d-instruments/eq-5d-3l-about/>) or a five-level
(EQ-5D-5L, <https://euroqol.org/eq-5d-instruments/eq-5d-5l-about/>)
scale. Frequently the scores on these five dimensions are converted to a
single utility index using country specific value sets, which can be used
in the clinical and economic evaluation of health care as well as in
population health surveys. The eq5d package provides methods to calculate
index scores from a subject's dimension scores. 28 TTO and 11 VAS EQ-5D-3L
value sets including those for countries in Szende et al (2007)
<doi:10.1007/1-4020-5511-0> and Szende et al (2014)
<doi:10.1007/978-94-007-7596-1>, 27 EQ-5D-5L EQ-VT value sets from the
EuroQol website, the EQ-5D-5L crosswalk value sets developed by
van Hout et al. (2012) <doi:10.1016/j.jval.2012.02.008> as well as the
crosswalk value set for Russia. Two EQ-5D-Y value sets are also included.
Methods are also included for the analysis of EQ-5D profiles along with a
shiny web tool to enable the calculation, visualisation and automated
statistical analysis of EQ-5D data via a web browser using EQ-5D dimension
scores stored in CSV or Excel files.
Author: Fraser Morton [aut, cre],
Jagtar Singh Nijjar [aut]
Maintainer: Fraser Morton <fraser.morton@glasgow.ac.uk>
Diff between eq5d versions 0.8.1 dated 2021-02-09 and 0.9.0 dated 2021-04-12
DESCRIPTION | 15 +++-- MD5 | 79 ++++++++++++++++--------------- NAMESPACE | 1 NEWS.md | 8 +++ R/data.R | 38 +++++++++++---- R/eq5d.R | 19 +++++-- R/eq5dds.R | 9 +-- R/eq5dlfs.R | 12 ++-- R/eq5dlss.R | 6 +- R/eq5dy.R |only R/eqpchc.R | 4 - R/helpers.R | 26 +++++++--- README.md | 49 ++++++++++--------- data/cw.RData |binary data/tto.RData |binary data/vt.RData |binary data/y.RData |only inst/doc/eq5d.R | 5 + inst/doc/eq5d.Rmd | 11 ++-- inst/doc/eq5d.html | 88 ++++++++++++++++++----------------- inst/shiny/server.R | 23 +++++++-- man/CW.Rd | 9 ++- man/TTO.Rd | 12 +++- man/VT.Rd | 10 ++- man/Y.Rd |only man/eq5d-package.Rd | 20 ++++--- man/eq5d.Rd | 3 - man/eq5dy.Rd |only man/getDimensionsFromHealthStates.Rd | 2 man/getHealthStates.Rd | 4 + man/getHealthStatesFromDimensions.Rd | 2 man/lfs.Rd | 2 tests/testthat/test-eq5d.R | 2 tests/testthat/test-eq5d3l.R | 6 ++ tests/testthat/test-eq5d5l.R | 7 ++ tests/testthat/test-eq5dcf.R | 2 tests/testthat/test-eq5dcw.R | 8 +++ tests/testthat/test-eq5dds.R | 2 tests/testthat/test-eq5dlfs.R | 2 tests/testthat/test-eq5dlss.R | 2 tests/testthat/test-eq5dy.R |only tests/testthat/test-eqpchc.R | 1 vignettes/eq5d.Rmd | 11 ++-- 43 files changed, 318 insertions(+), 182 deletions(-)
Title: Utilities from 'Seminar fuer Statistik' ETH Zurich
Description: Useful utilities ['goodies'] from Seminar fuer Statistik ETH Zurich,
some of which were ported from S-plus in the 1990s.
For graphics, have pretty (Log-scale) axes, an enhanced Tukey-Anscombe
plot, combining histogram and boxplot, 2d-residual plots, a 'tachoPlot()',
pretty arrows, etc.
For robustness, have a robust F test and robust range().
For system support, notably on Linux, provides 'Sys.*()' functions with
more access to system and CPU information.
Finally, miscellaneous utilities such as simple efficient prime numbers,
integer codes, Duplicated(), toLatex.numeric() and is.whole().
Author: Martin Maechler [aut, cre] (<https://orcid.org/0000-0002-8685-9910>),
Werner Stahel [ctb] (Functions: compresid2way(), f.robftest(), last(),
p.scales(), p.dnorm()),
Andreas Ruckstuhl [ctb] (Functions: p.arrows(), p.profileTraces(),
p.res.2x()),
Christian Keller [ctb] (Functions: histBxp(), p.tachoPlot()),
Kjetil Halvorsen [ctb] (Functions: KSd(), ecdf.ksCI()),
Alain Hauser [ctb] (Functions: cairoSwd(), is.whole(),
toLatex.numeric()*),
Christoph Buser [ctb] (to function Duplicated()),
Lorenz Gygax [ctb] (to function p.res.2fact()),
Bill Venables [ctb] (Functions: empty.dimnames(), primes()),
Tony Plate [ctb] (to inv.seq()),
Isabelle Fl<fc>ckiger [ctb],
Marcel Wolbers [ctb],
Markus Keller [ctb],
Sandrine Dudoit [ctb],
Jane Fridlyand [ctb],
Greg Snow [ctb] (to loessDemo()),
Henrik Aa. Nielsen [ctb] (to loessDemo()),
Vincent Carey [ctb],
Ben Bolker [ctb],
Philippe Grosjean [ctb],
Fr<e9>d<e9>ric Ibanez [ctb],
Caterina Savi [ctb],
Charles Geyer [ctb],
Jens Oehlschl<e4>gel [ctb]
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between sfsmisc versions 1.1-10 dated 2021-03-29 and 1.1-11 dated 2021-04-12
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- R/Defunct.R | 12 ++++++++++++ R/Deprecated.R | 16 ---------------- R/sessionInfo-ext.R | 12 +++++++----- inst/NEWS.Rd | 21 ++++++++++++++++++++- man/posdefify.Rd | 2 ++ man/sessionInfoX.Rd | 6 ++++-- tests/posdef.R | 11 +++++++++-- tests/posdef.Rout.save | 21 +++++++++++++++------ 10 files changed, 83 insertions(+), 46 deletions(-)
Title: 'Rcpp' Interface to 'PostgreSQL'
Description: Fully 'DBI'-compliant 'Rcpp'-backed interface to
'PostgreSQL' <https://www.postgresql.org/>, an open-source relational
database.
Author: Hadley Wickham [aut],
Jeroen Ooms [aut],
Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>),
RStudio [cph],
R Consortium [fnd],
Tomoaki Nishiyama [ctb] (Code for encoding vectors into strings derived
from RPostgreSQL)
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between RPostgres versions 1.3.1 dated 2021-01-19 and 1.3.2 dated 2021-04-12
DESCRIPTION | 10 MD5 | 1668 ++++++++++++++++++++++++++++++++++++++++++++++- NEWS.md | 15 R/PqConnection.R | 3 R/PqResult.R | 6 R/Redshift.R | 4 R/quote.R | 5 R/tables.R | 2 README.md | 2 build/vignette.rds |binary configure | 17 inst/doc/work-queue.R | 312 ++++---- inst/doc/work-queue.Rmd | 2 inst/doc/work-queue.html | 478 ++++--------- man/Redshift.Rd | 4 man/postgres-query.Rd | 6 man/postgres-tables.Rd | 2 man/quote.Rd | 5 src/Makevars.in | 2 src/Makevars.win | 2 src/vendor |only vignettes/work-queue.Rmd | 2 22 files changed, 2006 insertions(+), 541 deletions(-)
Title: Estimation of Model-Based Predictions, Contrasts and Means
Description: Implements a general interface for model-based
estimations for a wide variety of models (see support list of insight;
Lüdecke, Waggoner & Makowski (2019) <doi:10.21105/joss.01412>), used
in the computation of marginal means, contrast analysis and
predictions.
Author: Dominique Makowski [aut, cre] (<https://orcid.org/0000-0001-5375-9967>,
@Dom_Makowski),
Daniel Lüdecke [aut] (<https://orcid.org/0000-0002-8895-3206>),
Mattan S. Ben-Shachar [aut] (<https://orcid.org/0000-0002-4287-4801>),
Indrajeet Patil [ctb] (<https://orcid.org/0000-0003-1995-6531>,
@patilindrajeets)
Maintainer: Dominique Makowski <dom.makowski@gmail.com>
Diff between modelbased versions 0.5.1 dated 2021-01-27 and 0.6.0 dated 2021-04-12
modelbased-0.5.1/modelbased/R/estimate_means.bayesian.R |only modelbased-0.5.1/modelbased/R/estimate_means.frequentist.R |only modelbased-0.5.1/modelbased/R/estimate_response.bayesian.R |only modelbased-0.5.1/modelbased/R/estimate_response.frequentist.R |only modelbased-0.5.1/modelbased/R/reshape_draws.R |only modelbased-0.5.1/modelbased/R/utils_estimate_response_init.R |only modelbased-0.5.1/modelbased/man/estimate_means.lm.Rd |only modelbased-0.5.1/modelbased/man/estimate_means.stanreg.Rd |only modelbased-0.5.1/modelbased/man/estimate_response.Rd |only modelbased-0.5.1/modelbased/man/estimate_response.glm.Rd |only modelbased-0.5.1/modelbased/man/estimate_response.stanreg.Rd |only modelbased-0.5.1/modelbased/man/estimate_smooth.stanreg.Rd |only modelbased-0.5.1/modelbased/man/reshape_draws.Rd |only modelbased-0.5.1/modelbased/tests/testthat/test-estimate_link.R |only modelbased-0.5.1/modelbased/tests/testthat/test-estimate_response.R |only modelbased-0.6.0/modelbased/DESCRIPTION | 73 +++-- modelbased-0.6.0/modelbased/MD5 | 101 +++---- modelbased-0.6.0/modelbased/NAMESPACE | 36 -- modelbased-0.6.0/modelbased/NEWS.md | 20 + modelbased-0.6.0/modelbased/R/data_restoretype.R |only modelbased-0.6.0/modelbased/R/estimate_contrasts.bayesian.R | 75 ++++- modelbased-0.6.0/modelbased/R/estimate_contrasts.frequentist.R | 30 +- modelbased-0.6.0/modelbased/R/estimate_means.R |only modelbased-0.6.0/modelbased/R/estimate_predicted.R |only modelbased-0.6.0/modelbased/R/estimate_slopes.R | 2 modelbased-0.6.0/modelbased/R/estimate_smooth.R | 82 +---- modelbased-0.6.0/modelbased/R/smoothing.R | 10 modelbased-0.6.0/modelbased/R/utils.R | 17 - modelbased-0.6.0/modelbased/R/utils_emmeans_wrapper.R | 16 + modelbased-0.6.0/modelbased/R/utils_predict_wrapper.R | 2 modelbased-0.6.0/modelbased/R/utils_summarize_posteriors.R | 28 +- modelbased-0.6.0/modelbased/R/visualisation_matrix.R | 2 modelbased-0.6.0/modelbased/R/visualisation_matrix.models.R | 61 +++- modelbased-0.6.0/modelbased/R/zero_crossings.R | 26 - modelbased-0.6.0/modelbased/README.md | 92 +++--- modelbased-0.6.0/modelbased/inst/WORDLIST |only modelbased-0.6.0/modelbased/man/data_restoretype.Rd |only modelbased-0.6.0/modelbased/man/estimate_contrasts.Rd | 26 + modelbased-0.6.0/modelbased/man/estimate_contrasts.lm.Rd | 34 +- modelbased-0.6.0/modelbased/man/estimate_contrasts.stanreg.Rd | 29 +- modelbased-0.6.0/modelbased/man/estimate_means.Rd | 140 +++++++--- modelbased-0.6.0/modelbased/man/estimate_relation.Rd |only modelbased-0.6.0/modelbased/man/estimate_slopes.Rd | 17 - modelbased-0.6.0/modelbased/man/estimate_slopes.lm.Rd | 17 - modelbased-0.6.0/modelbased/man/estimate_slopes.stanreg.Rd | 17 - modelbased-0.6.0/modelbased/man/estimate_smooth.Rd | 45 +-- modelbased-0.6.0/modelbased/man/figures/unnamed-chunk-13-1.png |binary modelbased-0.6.0/modelbased/man/figures/unnamed-chunk-5-1.png |binary modelbased-0.6.0/modelbased/man/figures/unnamed-chunk-8-1.png |binary modelbased-0.6.0/modelbased/man/smoothing.Rd | 72 ++--- modelbased-0.6.0/modelbased/man/zero_crossings.Rd | 51 +-- modelbased-0.6.0/modelbased/tests/spelling.R |only modelbased-0.6.0/modelbased/tests/testthat/test-attributes_visualisation.R | 38 +- modelbased-0.6.0/modelbased/tests/testthat/test-estimate_contrasts.R | 76 ++--- modelbased-0.6.0/modelbased/tests/testthat/test-estimate_means.R | 68 ++-- modelbased-0.6.0/modelbased/tests/testthat/test-estimate_predicted.R |only modelbased-0.6.0/modelbased/tests/testthat/test-estimate_slopes.R | 8 modelbased-0.6.0/modelbased/tests/testthat/test-estimate_smooth.R | 10 modelbased-0.6.0/modelbased/tests/testthat/test-glmmTMB.R | 26 - modelbased-0.6.0/modelbased/tests/testthat/test-mgcv.R | 16 - modelbased-0.6.0/modelbased/tests/testthat/test-signal.R | 2 modelbased-0.6.0/modelbased/tests/testthat/test-visualisation_matrix.R | 24 - modelbased-0.6.0/modelbased/tests/testthat/test-visualisation_matrix_models.R | 30 +- 63 files changed, 827 insertions(+), 592 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-18 1.1
Title: Multivariate Fay Herriot Models for Small Area Estimation
Description: Implements multivariate Fay-Herriot models for small area estimation. It uses empirical best linear unbiased prediction (EBLUP) estimator. Multivariate models consider the correlation of several target variables and borrow strength from auxiliary variables to improve the effectiveness of a domain sample size. Models which accommodated by this package are univariate model with several target variables (model 0), multivariate model (model 1), autoregressive multivariate model (model 2), and heteroscedastic autoregressive multivariate model (model 3). Functions provide EBLUP estimators and mean squared error (MSE) estimator for each model. These models were developed by Roberto Benavent and Domingo Morales (2015) <doi:10.1016/j.csda.2015.07.013>.
Author: Novia Permatasari, Azka Ubaidillah
Maintainer: Novia Permatasari <16.9335@stis.ac.id>
Diff between msae versions 0.1.2 dated 2020-06-05 and 0.1.3 dated 2021-04-12
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- R/data1.R | 12 +++++++----- R/data2.R | 14 ++++++++------ R/data3.R | 14 ++++++++------ data/datasae1.rda |binary data/datasae2.rda |binary data/datasae3.rda |binary man/datasae1.Rd | 12 +++++++----- man/datasae2.Rd | 14 ++++++++------ man/datasae3.Rd | 14 ++++++++------ 11 files changed, 59 insertions(+), 47 deletions(-)
Title: Simulation and Analysis Tools for Clinical Dose Response
Modeling
Description: Bayesian and ML Emax model fitting, graphics and simulation for clinical dose
response. The summary data from the dose response meta-analyses in
Thomas, Sweeney, and Somayaji (2014) <doi:10.1080/19466315.2014.924876> and
Thomas and Roy (2016) <doi:10.1080/19466315.2016.1256229>
Wu, Banerjee, Jin, Menon, Martin, and Heatherington(2017) <doi:10.1177/0962280216684528>
are included
in the package. The prior distributions for the Bayesian analyses default to
the posterior predictive distributions derived from these references.
Author: Neal Thomas [aut, cre] (<https://orcid.org/0000-0002-1915-8487>),
Jing Wu [aut],
Mike K. Smith [aut]
Maintainer: Neal Thomas <snthomas99@gmail.com>
Diff between clinDR versions 2.3 dated 2020-07-01 and 2.3.5 dated 2021-04-12
DESCRIPTION | 20 +-- MD5 | 63 +++++----- NAMESPACE | 12 + R/fitEmaxB.R | 24 +-- R/generic.R | 10 + R/runShiny.R |only inst/NEWS | 6 inst/shiny |only inst/tests/extraGraphics/pdfoutput/output.densityplot_new.pdf |binary inst/tests/extraGraphics/pdfoutput/output.densityplot_old.pdf |binary inst/tests/extraGraphics/pdfoutput/output.emaxsimBobj_new.pdf |binary inst/tests/extraGraphics/pdfoutput/output.emaxsimBobj_old.pdf |binary inst/tests/extraGraphics/pdfoutput/output.emaxsimobj_new.pdf |binary inst/tests/extraGraphics/pdfoutput/output.emaxsimobj_old.pdf |binary inst/tests/extraGraphics/pdfoutput/output.fitEmaxB_new.pdf |binary inst/tests/extraGraphics/pdfoutput/output.fitEmaxB_old.pdf |binary inst/tests/extraGraphics/pdfoutput/output.fitEmax_new.pdf |binary inst/tests/extraGraphics/pdfoutput/output.fitEmax_old.pdf |binary inst/tests/extraGraphics/pdfoutput/output.plotB_new.pdf |binary inst/tests/extraGraphics/pdfoutput/output.plotB_old.pdf |binary inst/tests/extraGraphics/pdfoutput/output.plotD_new.pdf |binary inst/tests/extraGraphics/pdfoutput/output.plotD_old.pdf |binary inst/tests/test.fitEmaxB.R | 6 inst/tests/test.fitEmaxBlocalParm.R | 34 ++++- inst/tests/test.shinyapp.R |only man/clinDR-package.Rd | 2 man/emaxPrior.control.Rd | 2 man/fitEmaxB.Rd | 17 ++ man/mcmc.control.Rd | 2 man/metaData.Rd | 2 man/plot.emaxsim.Rd | 3 man/runShiny.Rd |only 32 files changed, 134 insertions(+), 69 deletions(-)