Title: Recurrent Event Regression
Description: A comprehensive collection of practical and easy-to-use tools for regression analysis of recurrent events, with or without the presence of a (possibly) informative terminal event. The modeling framework is based on a joint frailty scale-change model, that includes models described in Wang et al. (2001) <doi:10.1198/016214501753209031>, Huang and Wang (2004) <doi:10.1198/016214504000001033>, Xu et al. (2017) <doi:10.1080/01621459.2016.1173557>, and Xu et al. (2019) <doi:10.5705/SS.202018.0224> as special cases. The implemented estimating procedure does not require any parametric assumption on the frailty distribution. The package also allows the users to specify different model forms for both the recurrent event process and the terminal event.
Author: Sy Han (Steven) Chiou [aut, cre],
Chiung-Yu Huang [aut]
Maintainer: Sy Han (Steven) Chiou <schiou@utdallas.edu>
Diff between reReg versions 1.3.0 dated 2020-07-22 and 1.4.0 dated 2021-04-14
reReg-1.3.0/reReg/man/plotMCF.Rd |only reReg-1.3.0/reReg/man/simSC.Rd |only reReg-1.4.0/reReg/DESCRIPTION | 16 reReg-1.4.0/reReg/MD5 | 54 + reReg-1.4.0/reReg/NAMESPACE | 28 reReg-1.4.0/reReg/NEWS.md | 14 reReg-1.4.0/reReg/R/Recur.R | 26 reReg-1.4.0/reReg/R/data.R | 14 reReg-1.4.0/reReg/R/mcf.R |only reReg-1.4.0/reReg/R/npFit.R |only reReg-1.4.0/reReg/R/plot.R | 809 ++++++++++++++++++--------- reReg-1.4.0/reReg/R/reReg.R | 576 ++++++++++--------- reReg-1.4.0/reReg/R/reReg_pkg.R | 17 reReg-1.4.0/reReg/R/regGeneral.R | 328 +++++----- reReg-1.4.0/reReg/R/residuals.R |only reReg-1.4.0/reReg/R/simu.R | 224 ++++--- reReg-1.4.0/reReg/R/summary.R | 157 ++--- reReg-1.4.0/reReg/data/simDat.RData |binary reReg-1.4.0/reReg/man/Recur-class.Rd |only reReg-1.4.0/reReg/man/basebind.Rd |only reReg-1.4.0/reReg/man/mcf.Rd |only reReg-1.4.0/reReg/man/mcf.formula-class.Rd |only reReg-1.4.0/reReg/man/plot.Recur.Rd | 85 +- reReg-1.4.0/reReg/man/plot.reReg.Rd | 39 + reReg-1.4.0/reReg/man/plotEvents.Rd | 52 + reReg-1.4.0/reReg/man/plotHaz.Rd | 32 - reReg-1.4.0/reReg/man/plotRate.Rd | 31 - reReg-1.4.0/reReg/man/reReg-package.Rd | 21 reReg-1.4.0/reReg/man/reReg.Rd | 92 +-- reReg-1.4.0/reReg/man/residuals.reReg.Rd |only reReg-1.4.0/reReg/man/simDat.Rd | 12 reReg-1.4.0/reReg/man/simGSC.Rd |only reReg-1.4.0/reReg/man/summary.Recur-class.Rd |only reReg-1.4.0/reReg/src/regRec.cpp | 113 ++- 34 files changed, 1699 insertions(+), 1041 deletions(-)
Title: Tools and Statistical Procedures in Plant Science
Description: The 'inti' package is part of the 'inkaverse' project for developing
different procedures and tools used in plant science and experimental designs.
The mean aim of the package is to support researchers during the planning of
experiments and data collection (tarpuy()), data analysis and graphics (yupana())
, and technical writing (rtciles()).
Learn more about the 'inkaverse' project at <https://inkaverse.com/>.
Author: Flavio Lozano-Isla [aut, cre] (<https://orcid.org/0000-0002-0714-669X>)
Maintainer: Flavio Lozano-Isla <flavjack@gmail.com>
Diff between inti versions 0.1.3 dated 2021-03-20 and 0.2.0 dated 2021-04-14
inti-0.1.3/inti/inst/rticles/rsconnect/shinyapps.io/flavjack/totora.dcf |only inti-0.1.3/inti/inst/tarpuy/rsconnect/shinyapps.io/flavjack/tarpuy-test.dcf |only inti-0.2.0/inti/DESCRIPTION | 9 inti-0.2.0/inti/MD5 | 50 +- inti-0.2.0/inti/NEWS.md | 41 + inti-0.2.0/inti/R/fieldbook_plex.R | 24 - inti-0.2.0/inti/R/fieldbook_report.R | 6 inti-0.2.0/inti/R/fieldbook_summary.R | 4 inti-0.2.0/inti/R/mean_comparison.R | 33 - inti-0.2.0/inti/R/plot_smr.R | 78 ++- inti-0.2.0/inti/R/web_table.R | 55 -- inti-0.2.0/inti/README.md | 7 inti-0.2.0/inti/build/vignette.rds |binary inti-0.2.0/inti/inst/doc/apps.html | 2 inti-0.2.0/inti/inst/tarpuy/pkgs.R | 4 inti-0.2.0/inti/inst/tarpuy/rsconnect/shinyapps.io/flavjack/tarpuy.dcf | 5 inti-0.2.0/inti/inst/tarpuy/server.R | 78 --- inti-0.2.0/inti/inst/tarpuy/ui.R | 10 inti-0.2.0/inti/inst/yupana/pkgs.R | 13 inti-0.2.0/inti/inst/yupana/rsconnect/shinyapps.io/flavjack/yupanapro.dcf | 5 inti-0.2.0/inti/inst/yupana/server.R | 217 +++------- inti-0.2.0/inti/inst/yupana/ui.R | 4 inti-0.2.0/inti/man/fieldbook_plex.Rd | 4 inti-0.2.0/inti/man/fieldbook_report.Rd | 4 inti-0.2.0/inti/man/fieldbook_summary.Rd | 4 inti-0.2.0/inti/man/mean_comparison.Rd | 12 inti-0.2.0/inti/man/plot_smr.Rd | 14 27 files changed, 308 insertions(+), 375 deletions(-)
Title: Import and Export 'SPSS', 'Stata' and 'SAS' Files
Description: Import foreign statistical formats into R via the embedded
'ReadStat' C library, <https://github.com/WizardMac/ReadStat>.
Author: Hadley Wickham [aut, cre],
Evan Miller [aut, cph] (Author of included ReadStat code),
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between haven versions 2.3.1 dated 2020-06-01 and 2.4.0 dated 2021-04-14
haven-2.3.1/haven/R/RcppExports.R |only haven-2.3.1/haven/R/haven.R |only haven-2.3.1/haven/src/RcppExports.cpp |only haven-2.3.1/haven/tests/testthat/datetime-d.dta |only haven-2.3.1/haven/tests/testthat/datetime.sas7bdat |only haven-2.3.1/haven/tests/testthat/datetime.sav |only haven-2.3.1/haven/tests/testthat/formats.sas7bcat |only haven-2.3.1/haven/tests/testthat/hadley.sas7bdat |only haven-2.3.1/haven/tests/testthat/hadley.zip |only haven-2.3.1/haven/tests/testthat/helper-lump.R |only haven-2.3.1/haven/tests/testthat/labelled-num-na.sav |only haven-2.3.1/haven/tests/testthat/labelled-num.sav |only haven-2.3.1/haven/tests/testthat/labelled-output.txt |only haven-2.3.1/haven/tests/testthat/labelled-spss-output.txt |only haven-2.3.1/haven/tests/testthat/labelled-str.sav |only haven-2.3.1/haven/tests/testthat/notes.dta |only haven-2.3.1/haven/tests/testthat/pillar_double.txt |only haven-2.3.1/haven/tests/testthat/pillar_integer.txt |only haven-2.3.1/haven/tests/testthat/pillar_spss_integer.txt |only haven-2.3.1/haven/tests/testthat/pillar_string.txt |only haven-2.3.1/haven/tests/testthat/pillar_tagged_na.txt |only haven-2.3.1/haven/tests/testthat/tagged-na-double.dta |only haven-2.3.1/haven/tests/testthat/tagged-na-int.dta |only haven-2.3.1/haven/tests/testthat/tagged-na.sas7bcat |only haven-2.3.1/haven/tests/testthat/tagged-na.sas7bdat |only haven-2.3.1/haven/tests/testthat/tagged-na.txt |only haven-2.3.1/haven/tests/testthat/test-as-factor.R |only haven-2.3.1/haven/tests/testthat/test-labelled-pillar.txt |only haven-2.3.1/haven/tests/testthat/test-pillar.R |only haven-2.3.1/haven/tests/testthat/test-read-connection.R |only haven-2.3.1/haven/tests/testthat/test-read-sas.R |only haven-2.3.1/haven/tests/testthat/test-read-sav.R |only haven-2.3.1/haven/tests/testthat/test-read-stata.R |only haven-2.3.1/haven/tests/testthat/test-read-xpt.R |only haven-2.3.1/haven/tests/testthat/test-replace_with.R |only haven-2.3.1/haven/tests/testthat/test-utils.R |only haven-2.3.1/haven/tests/testthat/test-write-dta.R |only haven-2.3.1/haven/tests/testthat/test-write-sas.R |only haven-2.3.1/haven/tests/testthat/test-write-sav.R |only haven-2.3.1/haven/tests/testthat/test-write-xpt.R |only haven-2.3.1/haven/tests/testthat/types.dta |only haven-2.3.1/haven/tests/testthat/umlauts.sav |only haven-2.3.1/haven/tests/testthat/variable-label.sav |only haven-2.3.1/haven/vignettes/releases |only haven-2.4.0/haven/DESCRIPTION | 29 haven-2.4.0/haven/MD5 | 211 +- haven-2.4.0/haven/NAMESPACE | 19 haven-2.4.0/haven/NEWS.md | 42 haven-2.4.0/haven/R/as_factor.R | 23 haven-2.4.0/haven/R/cpp11.R |only haven-2.4.0/haven/R/haven-package.R |only haven-2.4.0/haven/R/haven-sas.R |only haven-2.4.0/haven/R/haven-spss.R |only haven-2.4.0/haven/R/haven-stata.R |only haven-2.4.0/haven/R/labelled.R | 16 haven-2.4.0/haven/R/labelled_spss.R | 181 + haven-2.4.0/haven/R/update.R | 3 haven-2.4.0/haven/R/utils.R | 63 haven-2.4.0/haven/R/zap_missing.R | 2 haven-2.4.0/haven/README.md | 30 haven-2.4.0/haven/build/vignette.rds |binary haven-2.4.0/haven/inst/doc/datetimes.Rmd | 4 haven-2.4.0/haven/inst/doc/datetimes.html | 195 -- haven-2.4.0/haven/inst/doc/semantics.html | 477 +--- haven-2.4.0/haven/man/as_factor.Rd | 7 haven-2.4.0/haven/man/haven-package.Rd |only haven-2.4.0/haven/man/read_dta.Rd | 8 haven-2.4.0/haven/man/read_sas.Rd | 4 haven-2.4.0/haven/man/read_spss.Rd | 10 haven-2.4.0/haven/man/read_xpt.Rd | 6 haven-2.4.0/haven/src/DfReader.cpp | 212 +- haven-2.4.0/haven/src/DfWriter.cpp | 207 +- haven-2.4.0/haven/src/cpp11.cpp |only haven-2.4.0/haven/src/haven_types.cpp | 6 haven-2.4.0/haven/src/haven_types.h | 7 haven-2.4.0/haven/src/readstat/CKHashTable.c | 282 ++ haven-2.4.0/haven/src/readstat/CKHashTable.h | 22 haven-2.4.0/haven/src/readstat/LICENSE |only haven-2.4.0/haven/src/readstat/NEWS |only haven-2.4.0/haven/src/readstat/readstat.h | 8 haven-2.4.0/haven/src/readstat/readstat_io_unistd.c | 42 haven-2.4.0/haven/src/readstat/readstat_strings.h |only haven-2.4.0/haven/src/readstat/readstat_writer.c | 8 haven-2.4.0/haven/src/readstat/sas/readstat_sas.c | 71 haven-2.4.0/haven/src/readstat/sas/readstat_sas.h | 9 haven-2.4.0/haven/src/readstat/sas/readstat_sas7bcat_read.c | 18 haven-2.4.0/haven/src/readstat/sas/readstat_sas7bdat_read.c | 205 +- haven-2.4.0/haven/src/readstat/sas/readstat_sas7bdat_write.c | 29 haven-2.4.0/haven/src/readstat/sas/readstat_sas_rle.c | 5 haven-2.4.0/haven/src/readstat/sas/readstat_xport_read.c | 64 haven-2.4.0/haven/src/readstat/sas/readstat_xport_write.c | 16 haven-2.4.0/haven/src/readstat/spss/readstat_por.c | 2 haven-2.4.0/haven/src/readstat/spss/readstat_por_read.c | 20 haven-2.4.0/haven/src/readstat/spss/readstat_sav.c | 10 haven-2.4.0/haven/src/readstat/spss/readstat_sav_parse.c | 962 ++-------- haven-2.4.0/haven/src/readstat/spss/readstat_sav_parse.rl | 104 - 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Title: Data Driven I-v Feature Extraction
Description: The Data Driven I-V Feature Extraction is used to extract
Current-Voltage (I-V) features from I-V curves. I-V curves indicate the
relationship between current and voltage for a solar cell or Photovoltaic (PV)
modules. The I-V features such as maximum power point (Pmp), shunt resistance (Rsh),
series resistance (Rs),short circuit current (Isc), open circuit voltage (Voc),
fill factor (FF), current at maximum power (Imp) and voltage at maximum power(Vmp)
contain important information of the performance for PV modules. The traditional
method uses the single diode model to model I-V curves and extract I-V features.
This package does not use the diode model, but uses data-driven a method which
select different linear parts of the I-V curves to extract I-V features.
This method also uses a sampling method to calculate uncertainties when extracting
I-V features. Also, because of the partially shaded array, "steps" occurs in
I-V curves. The "Segmented Regression" method is used to identify steps in I-V curves.
This material is based upon work supported by the U.S. Department of Energy’s
Office of Energy Efficiency and Renewable Energy (EERE) under Solar Energy
Technologies Office (SETO) Agreement Number DE-EE0007140. Further information can be
found in the following paper.
[1] Ma, X. et al, 2019.
<doi:10.1109/JPHOTOV.2019.2928477>.
Author: Wei-Heng Huang [aut] (<https://orcid.org/0000-0002-6609-4981>),
Xuan Ma [aut] (<https://orcid.org/0000-0003-2361-2846>),
Jiqi Liu [aut] (<https://orcid.org/0000-0003-2016-4160>),
Menghong Wang [ctb] (<https://orcid.org/0000-0001-7349-699X>),
Alan J. Curran [ctb] (<https://orcid.org/0000-0002-4505-8359>),
Justin S. Fada [ctb] (<https://orcid.org/0000-0002-0029-5051>),
Jean-Nicolas Jaubert [ctb] (<https://orcid.org/0000-0002-9663-6999>),
Jing Sun [ctb] (<https://orcid.org/0000-0002-4313-2316>),
Jennifer L. Braid [ctb] (<https://orcid.org/0000-0002-0677-7756>),
Jenny Brynjarsdottir [ctb] (<https://orcid.org/0000-0003-1859-4962>),
Roger H. French [aut, cph] (<https://orcid.org/0000-0002-6162-0532>),
Megan M. Morbitzer [ctb, cre] (<https://orcid.org/0000-0002-9847-2350>)
Maintainer: Megan M. Morbitzer <mmm308@case.edu>
Diff between ddiv versions 0.1.0 dated 2018-09-28 and 0.1.1 dated 2021-04-14
DESCRIPTION | 36 ++++--- MD5 | 73 +++++++------- R/IVExtractResult.R | 55 +++++++--- R/IV_timeseries.R |only R/IVfeature.R | 121 ++++++++++++++--------- R/IVsteps.R | 29 ++--- R/IVuncertain.R | 51 +++++---- build/vignette.rds |binary data/IV_timeseries.rda |only inst/doc/Daystar.R | 2 inst/doc/Daystar.Rmd | 2 inst/doc/Daystar.html | 172 +++++++++++++++++++++++---------- inst/doc/IV_4K.R | 2 inst/doc/IV_4K.html | 173 +++++++++++++++++++++++---------- inst/doc/IV_5M.R | 2 inst/doc/IV_5M.html | 187 +++++++++++++++++++++++++----------- inst/doc/IV_timeseries.R |only inst/doc/IV_timeseries.Rmd |only inst/doc/IV_timeseries.html |only inst/doc/IVcurve.R | 6 - inst/doc/IVcurve.Rmd | 4 inst/doc/IVcurve.html | 213 +++++++++++++++++++++++++++++------------ inst/doc/ddiv.R | 10 - inst/doc/ddiv.Rmd | 16 +-- inst/doc/ddiv.html | 226 +++++++++++++++++++++++++++++--------------- man/IVExtractResult.Rd | 46 +++++++- man/IV_4K.Rd | 6 - man/IV_5M_1.Rd | 6 - man/IV_5M_2.Rd | 6 - man/IV_daystar.Rd | 6 - man/IV_step1.Rd | 6 - man/IV_step2.Rd | 6 - man/IV_step3.Rd | 6 - man/IV_timeseries.Rd |only man/IVfeature.Rd | 29 +++++ man/IVsteps.Rd | 4 man/IVuncertain.Rd | 19 ++- vignettes/Daystar.Rmd | 2 vignettes/IV_timeseries.Rmd |only vignettes/IVcurve.Rmd | 4 vignettes/ddiv.Rmd | 16 +-- 41 files changed, 1041 insertions(+), 501 deletions(-)
Title: Analysing Convergent Evolution using the Wheatsheaf Index
Description: Analysing convergent evolution using the Wheatsheaf index, described in Arbuckle et al. (2014) <doi: 10.1111/2041-210X.12195>, and some other random but perhaps useful functions.
Author: Kevin Arbuckle and Amanda Minter
Maintainer: Kevin Arbuckle <kevin.arbuckle@swansea.ac.uk>
Diff between windex versions 2.0.1 dated 2021-01-13 and 2.0.2 dated 2021-04-14
windex-2.0.1/windex/R/sisterDivTime.R |only windex-2.0.1/windex/R/sisterRichness.R |only windex-2.0.1/windex/man/sisterDivTime.Rd |only windex-2.0.1/windex/man/sisterRichness.Rd |only windex-2.0.2/windex/DESCRIPTION | 12 ++++++------ windex-2.0.2/windex/MD5 | 18 ++++++++---------- windex-2.0.2/windex/R/richYuleInputs.R |only windex-2.0.2/windex/R/treecheck.R | 6 +++--- windex-2.0.2/windex/R/treedatacheck.R | 6 +++--- windex-2.0.2/windex/man/richYuleInputs.Rd |only windex-2.0.2/windex/man/test.windex.Rd | 4 ++-- windex-2.0.2/windex/man/windex.Rd | 2 +- windex-2.0.2/windex/man/windex.sim.test.Rd | 2 +- 13 files changed, 24 insertions(+), 26 deletions(-)
Title: Download Official Spatial Data Sets of Brazil
Description: Easy access to official spatial data sets of Brazil as 'sf' objects
in R. The package includes a wide range of geospatial data available
at various geographic scales and for various years with harmonized
attributes, projection and fixed topology.
Author: Rafael H. M. Pereira [aut, cre]
(<https://orcid.org/0000-0003-2125-7465>),
Caio Nogueira Goncalves [aut],
Paulo Henrique Fernandes de Araujo [ctb],
Guilherme Duarte Carvalho [ctb],
Rodrigo Almeida de Arruda [ctb],
Igor Nascimento [ctb],
Barbara Santiago Pedreira da Costa [ctb],
Welligtton Silva Cavedo [ctb],
Pedro R. Andrade [ctb],
Alan da Silva [ctb],
Carlos Kauê Vieira Braga [ctb],
Carl Schmertmann [ctb],
Alessandro Samuel-Rosa [ctb],
Daniel Ferreira [ctb],
Ipea - Institue for Applied Economic Research [cph, fnd]
Maintainer: Rafael H. M. Pereira <rafa.pereira.br@gmail.com>
Diff between geobr versions 1.5-1 dated 2021-02-06 and 1.6 dated 2021-04-14
DESCRIPTION | 22 +- MD5 | 185 ++++++++++++------------ NAMESPACE | 6 R/cep_to_state.R | 9 - R/download_metadata.R | 40 +---- R/geobr.R | 5 R/grid_state_correspondence_table.R | 4 R/list_geobr.R | 10 - R/lookup_muni.R | 20 +- R/read_amazon.R | 34 ++-- R/read_biomes.R | 36 ++-- R/read_census_tract.R | 35 ++-- R/read_comparable_areas.R |only R/read_conservation_units.R | 33 ++-- R/read_country.R | 31 ++-- R/read_disaster_risk_area.R | 47 ++---- R/read_health_facilities.R | 46 ++--- R/read_health_region.R | 49 ++++-- R/read_immediate_region.R | 33 ++-- R/read_indigenous_land.R | 41 ++--- R/read_intermediate_region.R | 41 ++--- R/read_meso_region.R | 34 ++-- R/read_metro_area.R | 39 ++--- R/read_micro_region.R | 35 ++-- R/read_municipal_seat.R | 28 +-- R/read_municipality.R | 55 +++---- R/read_neighborhood.R | 29 +-- R/read_pop_arrangements.R |only R/read_region.R | 27 +-- R/read_schools.R | 25 +-- R/read_semiarid.R | 31 ++-- R/read_state.R | 30 +-- R/read_statistical_grid.R | 44 +++-- R/read_urban_area.R | 37 ++-- R/read_urban_concentrations.R |only R/read_weighting_area.R | 48 +++--- R/utils.R | 107 +++++++++++-- build/partial.rdb |only build/vignette.rds |binary data/grid_state_correspondence_table.RData |binary inst/doc/intro_to_geobr.Rmd | 6 inst/doc/intro_to_geobr.html | 49 +++--- man/cep_to_state.Rd | 8 - man/check_connection.Rd |only man/download_gpkg.Rd | 1 man/download_metadata.Rd | 9 - man/grid_state_correspondence_table.Rd | 9 - man/list_geobr.Rd | 10 - man/load_gpkg.Rd | 1 man/lookup_muni.Rd | 17 +- man/read_amazon.Rd | 34 ++-- man/read_biomes.Rd | 37 ++-- man/read_census_tract.Rd | 34 ++-- man/read_comparable_areas.Rd |only man/read_conservation_units.Rd | 34 ++-- man/read_country.Rd | 31 ++-- man/read_disaster_risk_area.Rd | 46 ++--- man/read_health_facilities.Rd | 45 ++--- man/read_health_region.Rd | 48 ++++-- man/read_immediate_region.Rd | 34 ++-- man/read_indigenous_land.Rd | 39 ++--- man/read_intermediate_region.Rd | 46 +++-- man/read_meso_region.Rd | 38 ++-- man/read_metro_area.Rd | 38 ++-- man/read_micro_region.Rd | 39 ++--- man/read_municipal_seat.Rd | 29 +-- man/read_municipality.Rd | 49 +++--- man/read_neighborhood.Rd | 29 +-- man/read_pop_arrangements.Rd |only man/read_region.Rd | 27 +-- man/read_schools.Rd | 24 +-- man/read_semiarid.Rd | 32 ++-- man/read_state.Rd | 30 ++- man/read_statistical_grid.Rd | 32 ++-- man/read_urban_area.Rd | 36 ++-- man/read_urban_concentrations.Rd |only man/read_weighting_area.Rd | 47 +++--- man/select_data_type.Rd | 1 man/select_metadata.Rd | 1 man/select_year_input.Rd | 1 tests/testthat/test-download_metadata.R | 3 tests/testthat/test-read_census_tract.R | 17 +- tests/testthat/test-read_comparable_areas.R |only tests/testthat/test-read_conservation_units.R | 7 tests/testthat/test-read_health_region.R | 4 tests/testthat/test-read_immediate_region.R | 6 tests/testthat/test-read_intermediate_region.R | 6 tests/testthat/test-read_meso_region.R | 8 - tests/testthat/test-read_micro_region.R | 11 - tests/testthat/test-read_municipal_seat.R | 5 tests/testthat/test-read_municipality.R | 54 ++++--- tests/testthat/test-read_pop_arrangements.R |only tests/testthat/test-read_schools.R | 2 tests/testthat/test-read_state.R | 20 +- tests/testthat/test-read_statistical_grid.R | 5 tests/testthat/test-read_urban_concentrations.R |only tests/testthat/test-read_weighting_area.R | 9 - vignettes/intro_to_geobr.Rmd | 6 vignettes/pandoc32e043bebd3.html |only vignettes/pandoc3d64491379ea.html |only 100 files changed, 1307 insertions(+), 1143 deletions(-)
Title: 'SAS' Linear Model
Description: This is a core implementation of 'SAS' procedures for linear models - GLM, REG, and ANOVA. Some R packages provide type II and type III SS. However, the results of nested and complex designs are often different from those of 'SAS.' Different results does not necessarily mean incorrectness. However, many wants the same results to SAS. This package aims to achieve that.
Reference: Littell RC, Stroup WW, Freund RJ (2002, ISBN:0-471-22174-0).
Author: Kyun-Seop Bae [aut]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between sasLM versions 0.5.1 dated 2021-03-16 and 0.5.2 dated 2021-04-14
sasLM-0.5.1/sasLM/inst/doc/Report-Different-Simplest2102221748.pdf |only sasLM-0.5.1/sasLM/inst/doc/Validation-Report-ANOVA-2102221740.pdf |only sasLM-0.5.1/sasLM/inst/doc/Validation-Report-GLM-2102221751.pdf |only sasLM-0.5.2/sasLM/DESCRIPTION | 6 - sasLM-0.5.2/sasLM/MD5 | 37 +++++----- sasLM-0.5.2/sasLM/R/BasicUtil.R | 19 +++-- sasLM-0.5.2/sasLM/R/CV.R |only sasLM-0.5.2/sasLM/R/LSM.R | 4 - sasLM-0.5.2/sasLM/R/PDIFF.R | 21 ++++- sasLM-0.5.2/sasLM/R/cSS.R | 7 + sasLM-0.5.2/sasLM/R/estmb.R | 2 sasLM-0.5.2/sasLM/R/lr.R | 12 +-- sasLM-0.5.2/sasLM/inst/NEWS.Rd | 10 ++ sasLM-0.5.2/sasLM/inst/doc/Report-Different-Simplest2104150030.pdf |only sasLM-0.5.2/sasLM/inst/doc/Report-NOT-OKs2104150027.pdf |only sasLM-0.5.2/sasLM/inst/doc/Validation-Report-ANOVA-2104150022.pdf |only sasLM-0.5.2/sasLM/inst/doc/Validation-Report-GLM-2104150017.pdf |only sasLM-0.5.2/sasLM/inst/doc/sasLM-manual.pdf |binary sasLM-0.5.2/sasLM/man/CV.Rd |only sasLM-0.5.2/sasLM/man/LSM.Rd | 3 sasLM-0.5.2/sasLM/man/cSS.Rd | 5 - sasLM-0.5.2/sasLM/man/estmb.Rd | 2 sasLM-0.5.2/sasLM/man/lr.Rd | 2 sasLM-0.5.2/sasLM/man/lr0.Rd | 4 - 24 files changed, 87 insertions(+), 47 deletions(-)
Title: Format R Code Automatically
Description: Provides a function tidy_source() to format R source code. Spaces
and indent will be added to the code automatically, and comments will be
preserved under certain conditions, so that R code will be more
human-readable and tidy. There is also a Shiny app as a user interface in
this package (see tidy_app()).
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Ed Lee [ctb],
Eugene Ha [ctb],
Kohske Takahashi [ctb],
Pavel Krivitsky [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between formatR versions 1.8 dated 2021-03-12 and 1.9 dated 2021-04-14
formatR-1.8/formatR/NEWS |only formatR-1.8/formatR/README.md |only formatR-1.9/formatR/DESCRIPTION | 13 - formatR-1.9/formatR/MD5 | 47 +-- formatR-1.9/formatR/NAMESPACE | 1 formatR-1.9/formatR/R/eval.R | 30 +- formatR-1.9/formatR/R/shiny.R | 6 formatR-1.9/formatR/R/tidy.R | 203 +++++++++++----- formatR-1.9/formatR/R/usage.R | 36 +- formatR-1.9/formatR/R/utils.R | 52 +--- formatR-1.9/formatR/build/vignette.rds |binary formatR-1.9/formatR/inst/NEWS.Rd |only formatR-1.9/formatR/inst/doc/formatR.R | 8 formatR-1.9/formatR/inst/doc/formatR.Rmd | 205 +++++++++++----- formatR-1.9/formatR/inst/doc/formatR.html | 143 ++++++----- formatR-1.9/formatR/inst/shiny/server.R | 2 formatR-1.9/formatR/inst/shiny/ui.R | 15 - formatR-1.9/formatR/man/tidy_app.Rd | 6 formatR-1.9/formatR/man/tidy_dir.Rd | 22 - formatR-1.9/formatR/man/tidy_eval.Rd | 28 +- formatR-1.9/formatR/man/tidy_source.Rd | 70 +++-- formatR-1.9/formatR/man/usage.Rd | 32 +- formatR-1.9/formatR/tests/testit/test-tidy.R | 190 +++++++-------- formatR-1.9/formatR/tests/testit/test-usage.R | 316 +++++++++++--------------- formatR-1.9/formatR/tests/testit/test-utils.R | 33 +- formatR-1.9/formatR/vignettes/formatR.Rmd | 205 +++++++++++----- 26 files changed, 936 insertions(+), 727 deletions(-)
Title: A Wrapper of the JavaScript Library 'DataTables'
Description: Data objects in R can be rendered as HTML tables using the
JavaScript library 'DataTables' (typically via R Markdown or Shiny). The
'DataTables' library has been included in this R package. The package name
'DT' is an abbreviation of 'DataTables'.
Author: Yihui Xie [aut, cre],
Joe Cheng [aut],
Xianying Tan [aut],
JJ Allaire [ctb],
Maximilian Girlich [ctb],
Greg Freedman Ellis [ctb],
Johannes Rauh [ctb],
jQuery contributors [ctb, cph] (jQuery in htmlwidgets/lib),
SpryMedia Limited [ctb, cph] (DataTables in htmlwidgets/lib),
Brian Reavis [ctb, cph] (selectize.js in htmlwidgets/lib),
Leon Gersen [ctb, cph] (noUiSlider in htmlwidgets/lib),
Bartek Szopka [ctb, cph] (jquery.highlight.js in htmlwidgets/lib),
RStudio, PBC [cph]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between DT versions 0.17 dated 2021-01-06 and 0.18 dated 2021-04-14
DT-0.17/DT/README.md |only DT-0.18/DT/DESCRIPTION | 8 +-- DT-0.18/DT/MD5 | 21 ++++----- DT-0.18/DT/NAMESPACE | 1 DT-0.18/DT/R/datatables.R | 69 +++++++++++++++++++++++------- DT-0.18/DT/R/format.R | 29 ++++++++++++ DT-0.18/DT/build/vignette.rds |binary DT-0.18/DT/inst/doc/DT.html | 21 ++++++--- DT-0.18/DT/inst/htmlwidgets/datatables.js | 10 ---- DT-0.18/DT/man/datatable.Rd | 22 ++++++--- DT-0.18/DT/man/styleInterval.Rd | 9 +++ DT-0.18/DT/tests/testit/test-format.R | 25 ++++++++++ 12 files changed, 157 insertions(+), 58 deletions(-)
Title: Create Blogs and Websites with R Markdown
Description: Write blog posts and web pages in R Markdown. This package supports
the static site generator 'Hugo' (<https://gohugo.io>) best, and it also
supports 'Jekyll' (<https://jekyllrb.com>) and 'Hexo' (<https://hexo.io>).
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Christophe Dervieux [aut] (<https://orcid.org/0000-0003-4474-2498>),
Alison Presmanes Hill [aut] (<https://orcid.org/0000-0002-8082-1890>),
Amber Thomas [ctb],
Beilei Bian [ctb],
Brandon Greenwell [ctb],
Brian Barkley [ctb],
Deependra Dhakal [ctb],
Eric Nantz [ctb],
Forest Fang [ctb],
Garrick Aden-Buie [ctb],
Hiroaki Yutani [ctb],
Ian Lyttle [ctb],
Jake Barlow [ctb],
James Balamuta [ctb],
JJ Allaire [ctb],
Jon Calder [ctb],
Jozef Hajnala [ctb],
Juan Manuel Vazquez [ctb],
Kevin Ushey [ctb],
Leonardo Collado-Torres [ctb],
Maëlle Salmon [ctb],
Maria Paula Caldas [ctb],
Nicolas Roelandt [ctb],
Oliver Madsen [ctb],
Raniere Silva [ctb],
TC Zhang [ctb],
Xianying Tan [ctb],
RStudio, PBC [cph]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between blogdown versions 1.2 dated 2021-03-04 and 1.3 dated 2021-04-14
blogdown-1.2/blogdown/README.md |only blogdown-1.3/blogdown/DESCRIPTION | 9 +- blogdown-1.3/blogdown/MD5 | 27 +++---- blogdown-1.3/blogdown/R/check.R | 36 +++++++--- blogdown-1.3/blogdown/R/clean.R | 13 +-- blogdown-1.3/blogdown/R/hugo.R | 9 +- blogdown-1.3/blogdown/R/install.R | 17 +--- blogdown-1.3/blogdown/R/render.R | 11 --- blogdown-1.3/blogdown/R/serve.R | 7 + blogdown-1.3/blogdown/R/utils.R | 14 +-- blogdown-1.3/blogdown/inst/rstudio/templates/project/skeleton.dcf | 33 +++++---- blogdown-1.3/blogdown/inst/scripts/update_meta.R | 3 blogdown-1.3/blogdown/man/build_site.Rd | 5 - blogdown-1.3/blogdown/man/hugo_cmd.Rd | 8 +- blogdown-1.3/blogdown/man/install_hugo.Rd | 18 +---- 15 files changed, 108 insertions(+), 102 deletions(-)
Title: A Simple Package for Testing R Packages
Description: Provides two convenience functions assert() and test_pkg() to
facilitate testing R packages.
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Steven Mortimer [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between testit versions 0.12 dated 2020-09-25 and 0.13 dated 2021-04-14
testit-0.12/testit/NEWS |only testit-0.12/testit/README.md |only testit-0.13/testit/DESCRIPTION | 8 ++++---- testit-0.13/testit/MD5 | 7 +++---- testit-0.13/testit/R/testit.R | 9 ++++++++- testit-0.13/testit/inst/NEWS.Rd |only 6 files changed, 15 insertions(+), 9 deletions(-)
Title: A Simple HTTP Server to Serve Static Files or Dynamic Documents
Description: Start an HTTP server in R to serve static files, or dynamic
documents that can be converted to HTML files (e.g., R Markdown) under a
given directory.
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Carson Sievert [ctb],
Jesse Anderson [ctb],
Ramnath Vaidyanathan [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between servr versions 0.21 dated 2020-12-14 and 0.22 dated 2021-04-14
servr-0.21/servr/NEWS |only servr-0.21/servr/README.md |only servr-0.22/servr/DESCRIPTION | 8 ++++---- servr-0.22/servr/MD5 | 9 ++++----- servr-0.22/servr/R/utils.R | 10 ++++++++-- servr-0.22/servr/inst/NEWS.Rd |only servr-0.22/servr/man/random_port.Rd | 2 +- 7 files changed, 17 insertions(+), 12 deletions(-)
Title: Subroutines to Estimate Rolling Window Multiple Correlation
Description: Rolling Window Multiple Correlation ('RolWinMulCor') estimates the rolling (running) window correlation for the bi- and multi-variate cases between regular (sampled on identical time points) time series, with especial emphasis to ecological data although this can be applied to other kinds of data sets. 'RolWinMulCor' is based on the concept of rolling, running or sliding window and is useful to evaluate the evolution of correlation through time and time-scales. 'RolWinMulCor' contains six functions. The first two focus on the bi-variate case: (1) rolwincor_1win() and (2) rolwincor_heatmap(), which estimate the correlation coefficients and the their respective p-values for only one window-length (time-scale) and considering all possible window-lengths or a band of window-lengths, respectively. The second two functions: (3) rolwinmulcor_1win() and (4) rolwinmulcor_heatmap() are designed to analyze the multi-variate case, following the bi-variate case to visually display the results, but these two approaches are methodologically different. That is, the multi-variate case estimates the adjusted coefficients of determination instead of the correlation coefficients. The last two functions: (5) plot_1win() and (6) plot_heatmap() are used to represent graphically the outputs of the four aforementioned functions as simple plots or as heat maps. The functions contained in 'RolWinMulCor' are highly flexible since these contains several parameters to control the estimation of correlation and the features of the plot output, e.g. to remove the (linear) trend contained in the time series under analysis, to choose different p-value correction methods (which are used to address the multiple comparison problem) or to personalise the plot outputs. The 'RolWinMulCor' package also provides examples with synthetic and real-life ecological time series to exemplify its use. Methods derived from H. Abdi. (2007) <https://personal.utdallas.edu/~herve/Abdi-MCC2007-pretty.pdf>, R. Telford (2013) <https://quantpalaeo.wordpress.com/2013/01/04/, J. M. Polanco-Martinez (2019) <doi:10.1007/s11071-019-04974-y>, and J. M. Polanco-Martinez (2020) <doi:10.1016/j.ecoinf.2020.101163>.
Author: Josue M. Polanco-Martinez [aut, cph, cre]
(<https://orcid.org/0000-0001-7164-0185>)
Maintainer: Josue M. Polanco-Martinez <josue.m.polanco@gmail.com>
Diff between RolWinMulCor versions 1.0.0 dated 2020-08-31 and 1.2.0 dated 2021-04-14
DESCRIPTION | 14 +++++------ MD5 | 33 +++++++++++++------------ R/plot_1win.R | 11 ++++---- R/plot_heatmap.R | 31 ++++++++++++++++-------- R/rolwincor_1win.R | 35 ++++++++++++++------------- R/rolwincor_heatmap.R | 27 +++++++++++---------- R/rolwinmulcor_1win.R | 33 +++++++++++++------------ R/rolwinmulcor_heatmap.R | 29 +++++++++++----------- build |only man/RolWinMulCor-package.Rd | 49 ++++++++++++++++++-------------------- man/YX_ecological_data.Rd | 9 +++---- man/plot_1win.Rd | 54 +++++++++++++++++++++++------------------- man/plot_heatmap.Rd | 56 ++++++++++++++++++++++++-------------------- man/rolwincor_1win.Rd | 30 +++++++++++------------ man/rolwincor_heatmap.Rd | 34 ++++++++++++++------------ man/rolwinmulcor_1win.Rd | 33 +++++++++++++------------ man/rolwinmulcor_heatmap.Rd | 32 +++++++++++-------------- man/syntDATA.Rd | 5 +++ 18 files changed, 274 insertions(+), 241 deletions(-)
Title: Penalized Elastic Net S/MM-Estimator of Regression
Description: Robust penalized (adaptive) elastic net S and M estimators for
linear regression. The methods are proposed in
Cohen Freue, G. V., Kepplinger, D., Salibián-Barrera, M., and Smucler, E.
(2019) <https://projecteuclid.org/euclid.aoas/1574910036>.
The package implements the extensions and algorithms described in
Kepplinger, D. (2020) <doi:10.14288/1.0392915>.
Author: David Kepplinger [aut, cre],
Matías Salibián-Barrera [aut],
Gabriela Cohen Freue [aut]
Maintainer: David Kepplinger <david.kepplinger@gmail.com>
Diff between pense versions 2.0.2 dated 2020-10-05 and 2.0.3 dated 2021-04-14
pense-2.0.2/pense/vignettes/migration_guide_cache/html/unnamed-chunk-4_896474b2edc055e450aa737ca1bfade2.RData |only pense-2.0.2/pense/vignettes/migration_guide_cache/html/unnamed-chunk-4_896474b2edc055e450aa737ca1bfade2.rdb |only pense-2.0.2/pense/vignettes/migration_guide_cache/html/unnamed-chunk-4_896474b2edc055e450aa737ca1bfade2.rdx |only pense-2.0.2/pense/vignettes/migration_guide_cache/html/unnamed-chunk-5_81e277e698da0d737648b72938aaabca.RData |only pense-2.0.2/pense/vignettes/migration_guide_cache/html/unnamed-chunk-5_81e277e698da0d737648b72938aaabca.rdb |only pense-2.0.2/pense/vignettes/migration_guide_cache/html/unnamed-chunk-5_81e277e698da0d737648b72938aaabca.rdx |only pense-2.0.2/pense/vignettes/migration_guide_cache/html/unnamed-chunk-6_9c4296deafc7dc466befba643ae5cf23.RData |only pense-2.0.2/pense/vignettes/migration_guide_cache/html/unnamed-chunk-6_9c4296deafc7dc466befba643ae5cf23.rdb |only pense-2.0.2/pense/vignettes/migration_guide_cache/html/unnamed-chunk-6_9c4296deafc7dc466befba643ae5cf23.rdx |only pense-2.0.3/pense/DESCRIPTION | 10 pense-2.0.3/pense/MD5 | 66 pense-2.0.3/pense/NEWS.md | 5 pense-2.0.3/pense/R/coef-methods.R | 76 pense-2.0.3/pense/R/control_options.R | 6 pense-2.0.3/pense/R/elnet.R | 6 pense-2.0.3/pense/R/pense_regression.R | 17 pense-2.0.3/pense/R/print-methods.R | 9 pense-2.0.3/pense/R/regmest_regression.R | 5 pense-2.0.3/pense/R/utilities-internal.R | 29 pense-2.0.3/pense/build/partial.rdb |binary pense-2.0.3/pense/build/pense.pdf |binary pense-2.0.3/pense/build/vignette.rds |binary pense-2.0.3/pense/configure | 877 ---------- pense-2.0.3/pense/configure.ac | 4 pense-2.0.3/pense/inst/doc/computing_adapense.html | 508 +---- pense-2.0.3/pense/inst/doc/lambda_grids.html | 326 --- pense-2.0.3/pense/inst/doc/migration_guide.html | 416 +--- pense-2.0.3/pense/man/coef.pense_cvfit.Rd | 3 pense-2.0.3/pense/man/coef.pense_fit.Rd | 3 pense-2.0.3/pense/src/nsoptim/optimizer/auglars.hpp | 75 pense-2.0.3/pense/src/nsoptim/optimizer/linear_algebra_utilities.hpp | 43 pense-2.0.3/pense/src/regularization_path.hpp | 2 pense-2.0.3/pense/vignettes/computing_adapense_files/figure-html/unnamed-chunk-6-1.png |binary pense-2.0.3/pense/vignettes/computing_adapense_files/figure-html/unnamed-chunk-9-1.png |binary pense-2.0.3/pense/vignettes/migration_guide_cache/html/unnamed-chunk-4_157feaabf1df04e255ebc73ea452985c.RData |only pense-2.0.3/pense/vignettes/migration_guide_cache/html/unnamed-chunk-4_157feaabf1df04e255ebc73ea452985c.rdb |only pense-2.0.3/pense/vignettes/migration_guide_cache/html/unnamed-chunk-4_157feaabf1df04e255ebc73ea452985c.rdx |only pense-2.0.3/pense/vignettes/migration_guide_cache/html/unnamed-chunk-5_0ca31a39d247ac109db72b262777fa3d.RData |only pense-2.0.3/pense/vignettes/migration_guide_cache/html/unnamed-chunk-5_0ca31a39d247ac109db72b262777fa3d.rdb |only pense-2.0.3/pense/vignettes/migration_guide_cache/html/unnamed-chunk-5_0ca31a39d247ac109db72b262777fa3d.rdx |only pense-2.0.3/pense/vignettes/migration_guide_cache/html/unnamed-chunk-6_d370271aeb4e78cb6f40f286cf70f150.RData |only pense-2.0.3/pense/vignettes/migration_guide_cache/html/unnamed-chunk-6_d370271aeb4e78cb6f40f286cf70f150.rdb |only pense-2.0.3/pense/vignettes/migration_guide_cache/html/unnamed-chunk-6_d370271aeb4e78cb6f40f286cf70f150.rdx |only 43 files changed, 571 insertions(+), 1915 deletions(-)
Title: Paginate the HTML Output of R Markdown with CSS for Print
Description: Use the paged media properties in CSS and the JavaScript
library 'paged.js' to split the content of an HTML document into discrete
pages. Each page can have its page size, page numbers, margin boxes, and
running headers, etc. Applications of this package include books, letters,
reports, papers, business cards, resumes, and posters.
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Romain Lesur [aut, cph] (<https://orcid.org/0000-0002-0721-5595>),
Brent Thorne [aut] (<https://orcid.org/0000-0002-1099-3857>),
Xianying Tan [aut] (<https://orcid.org/0000-0002-6072-3521>),
Christophe Dervieux [ctb] (<https://orcid.org/0000-0003-4474-2498>),
Atsushi Yasumoto [ctb] (<https://orcid.org/0000-0002-8335-495X>),
RStudio, PBC [cph],
Adam Hyde [ctb] (paged.js in resources/js/),
Min-Zhong Lu [ctb] (resume.css in resources/css/),
Zulko [ctb] (poster-relaxed.css in resources/css/)
Maintainer: Yihui Xie <xie@yihui.name>
Diff between pagedown versions 0.13 dated 2020-11-30 and 0.14 dated 2021-04-14
DESCRIPTION | 7 MD5 | 34 NEWS.md | 36 R/chrome.R | 63 R/paged.R | 11 R/resume.R | 7 README.md | 6 inst/resources/css/crc.css | 2 inst/resources/css/default-page.css | 6 inst/resources/css/default.css | 1 inst/resources/css/thesis.css | 6 inst/resources/js/config.js | 12 inst/resources/js/hooks.js | 48 inst/resources/js/paged.js |14253 ++++++++++++++++++++++-------------- inst/resources/lua/loft.lua | 8 man/html_resume.Rd | 6 tests/test-travis.R | 4 tests/test-travis/test-chrome.R | 7 18 files changed, 9092 insertions(+), 5425 deletions(-)
Title: A General-Purpose Package for Dynamic Report Generation in R
Description: Provides a general-purpose tool for dynamic report generation in R
using Literate Programming techniques.
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Abhraneel Sarma [ctb],
Adam Vogt [ctb],
Alastair Andrew [ctb],
Alex Zvoleff [ctb],
Andre Simon [ctb] (the CSS files under inst/themes/ were derived from
the Highlight package http://www.andre-simon.de),
Aron Atkins [ctb],
Aaron Wolen [ctb],
Ashley Manton [ctb],
Atsushi Yasumoto [ctb] (<https://orcid.org/0000-0002-8335-495X>),
Ben Baumer [ctb],
Brian Diggs [ctb],
Brian Zhang [ctb],
Cassio Pereira [ctb],
Christophe Dervieux [ctb],
David Hall [ctb],
David Hugh-Jones [ctb],
David Robinson [ctb],
Doug Hemken [ctb],
Duncan Murdoch [ctb],
Elio Campitelli [ctb],
Ellis Hughes [ctb],
Emily Riederer [ctb],
Fabian Hirschmann [ctb],
Fitch Simeon [ctb],
Forest Fang [ctb],
Frank E Harrell Jr [ctb] (the Sweavel package at inst/misc/Sweavel.sty),
Garrick Aden-Buie [ctb],
Gregoire Detrez [ctb],
Hadley Wickham [ctb],
Hao Zhu [ctb],
Heewon Jeon [ctb],
Henrik Bengtsson [ctb],
Hiroaki Yutani [ctb],
Ian Lyttle [ctb],
Hodges Daniel [ctb],
Jake Burkhead [ctb],
James Manton [ctb],
Jared Lander [ctb],
Jason Punyon [ctb],
Javier Luraschi [ctb],
Jeff Arnold [ctb],
Jenny Bryan [ctb],
Jeremy Ashkenas [ctb, cph] (the CSS file at
inst/misc/docco-classic.css),
Jeremy Stephens [ctb],
Jim Hester [ctb],
Joe Cheng [ctb],
Johannes Ranke [ctb],
John Honaker [ctb],
John Muschelli [ctb],
Jonathan Keane [ctb],
JJ Allaire [ctb],
Johan Toloe [ctb],
Jonathan Sidi [ctb],
Joseph Larmarange [ctb],
Julien Barnier [ctb],
Kaiyin Zhong [ctb],
Kamil Slowikowski [ctb],
Karl Forner [ctb],
Kevin K. Smith [ctb],
Kirill Mueller [ctb],
Kohske Takahashi [ctb],
Lorenz Walthert [ctb],
Lucas Gallindo [ctb],
Marius Hofert [ctb],
Martin Modrák [ctb],
Michael Chirico [ctb],
Michael Friendly [ctb],
Michal Bojanowski [ctb],
Michel Kuhlmann [ctb],
Miller Patrick [ctb],
Nacho Caballero [ctb],
Nick Salkowski [ctb],
Niels Richard Hansen [ctb],
Noam Ross [ctb],
Obada Mahdi [ctb],
Pavel N. Krivitsky [ctb] (<https://orcid.org/0000-0002-9101-3362>),
Qiang Li [ctb],
Ramnath Vaidyanathan [ctb],
Richard Cotton [ctb],
Robert Krzyzanowski [ctb],
Romain Francois [ctb],
Ruaridh Williamson [ctb],
Scott Kostyshak [ctb],
Sebastian Meyer [ctb],
Sietse Brouwer [ctb],
Simon de Bernard [ctb],
Sylvain Rousseau [ctb],
Taiyun Wei [ctb],
Thibaut Assus [ctb],
Thibaut Lamadon [ctb],
Thomas Leeper [ctb],
Tim Mastny [ctb],
Tom Torsney-Weir [ctb],
Trevor Davis [ctb],
Viktoras Veitas [ctb],
Weicheng Zhu [ctb],
Wush Wu [ctb],
Zachary Foster [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between knitr versions 1.31 dated 2021-01-27 and 1.32 dated 2021-04-14
knitr-1.31/knitr/README.md |only knitr-1.32/knitr/DESCRIPTION | 14 - knitr-1.32/knitr/MD5 | 57 +++--- knitr-1.32/knitr/R/block.R | 145 +++++++++++----- knitr-1.32/knitr/R/cache.R | 21 +- knitr-1.32/knitr/R/defaults.R | 2 knitr-1.32/knitr/R/engine.R | 35 ++- knitr-1.32/knitr/R/header.R | 6 knitr-1.32/knitr/R/hooks-latex.R | 8 knitr-1.32/knitr/R/hooks-md.R | 10 - knitr-1.32/knitr/R/plot.R | 33 ++- knitr-1.32/knitr/R/table.R | 21 +- knitr-1.32/knitr/R/utils-conversion.R | 22 -- knitr-1.32/knitr/R/utils-vignettes.R | 32 +-- knitr-1.32/knitr/R/utils.R | 54 +++++ knitr-1.32/knitr/build/vignette.rds |binary knitr-1.32/knitr/inst/doc/knit_expand.html | 4 knitr-1.32/knitr/inst/doc/knit_print.html | 18 - knitr-1.32/knitr/inst/doc/knitr-intro.html | 10 - knitr-1.32/knitr/inst/doc/knitr-markdown.html | 2 knitr-1.32/knitr/inst/doc/knitr-refcard.pdf |binary knitr-1.32/knitr/inst/misc/tikz2pdf.tex | 8 knitr-1.32/knitr/man/knit_filter.Rd | 2 knitr-1.32/knitr/man/load_cache.Rd | 14 + knitr-1.32/knitr/man/opts_template.Rd | 2 knitr-1.32/knitr/man/vignette_engines.Rd | 21 -- knitr-1.32/knitr/tests/testit/test-hooks-md.R | 18 + knitr-1.32/knitr/tests/testit/test-plot.R | 144 +++++++++------ knitr-1.32/knitr/tests/testit/test-table.R | 235 +++++++++++--------------- knitr-1.32/knitr/tests/testit/test-utils.R | 2 30 files changed, 554 insertions(+), 386 deletions(-)
Title: Algorithmic Fairness Metrics
Description: Offers calculation, visualization and comparison of algorithmic fairness metrics. Fair machine learning is an emerging topic with the overarching aim to critically assess whether ML algorithms reinforce existing social biases. Unfair algorithms can propagate such biases and produce predictions with a disparate impact on various sensitive groups of individuals (defined by sex, gender, ethnicity, religion, income, socioeconomic status, physical or mental disabilities). Fair algorithms possess the underlying foundation that these groups should be treated similarly or have similar prediction outcomes. The fairness R package offers the calculation and comparisons of commonly and less commonly used fairness metrics in population subgroups. These methods are described by Calders and Verwer (2010) <doi:10.1007/s10618-010-0190-x>, Chouldechova (2017) <doi:10.1089/big.2016.0047>, Feldman et al. (2015) <doi:10.1145/2783258.2783311> , Friedler et al. (2018) <doi:10.1145/3287560.3287589> and Zafar et al. (2017) <doi:10.1145/3038912.3052660>. The package also offers convenient visualizations to help understand fairness metrics.
Author: Nikita Kozodoi [aut, cre],
Tibor V. Varga [aut] (<https://orcid.org/0000-0002-2383-699X>)
Maintainer: Nikita Kozodoi <n.kozodoi@icloud.com>
Diff between fairness versions 1.2.1 dated 2021-03-31 and 1.2.2 dated 2021-04-14
DESCRIPTION | 6 +++--- MD5 | 36 ++++++++++++++++++------------------ NEWS.md | 4 ++++ R/acc_parity.R | 46 ++++++++++++++++++++++++++++++---------------- R/dem_parity.R | 18 ++++++++++++++++-- R/equal_odds.R | 18 ++++++++++++++++-- R/fairness-package.R | 4 ++-- R/fnr_parity.R | 18 ++++++++++++++++-- R/fpr_parity.R | 18 ++++++++++++++++-- R/mcc_parity.R | 18 ++++++++++++++++-- R/npv_parity.R | 18 ++++++++++++++++-- R/pred_rate_parity.R | 18 ++++++++++++++++-- R/prop_parity.R | 18 ++++++++++++++++-- R/spec_parity.R | 18 ++++++++++++++++-- build/vignette.rds |binary inst/doc/fairness.html | 23 +++-------------------- man/fairness.Rd | 4 ++-- man/figures/Plot_bar.png |binary man/figures/Plot_prob.png |binary 19 files changed, 206 insertions(+), 79 deletions(-)
Title: Spatial Data Analysis
Description: Methods for spatial data analysis, especially raster data. Methods allow for low-level data manipulation as well as high-level global, local, zonal, and focal computation. The predict and interpolate methods facilitate the use of regression type (interpolation, machine learning) models for spatial prediction. Processing of very large files is supported. See the manual and tutorials on <https://rspatial.org/terra/> to get started. 'terra' is very similar to the 'raster' package; but 'terra' can do more and it simpler to use and it is faster.
Author: Robert J. Hijmans [cre, aut] (<https://orcid.org/0000-0001-5872-2872>),
Roger Bivand [ctb] (<https://orcid.org/0000-0003-2392-6140>),
Karl Forner [ctb],
Jeroen Ooms [ctb] (<https://orcid.org/0000-0002-4035-0289>),
Edzer Pebesma [ctb] (<https://orcid.org/0000-0001-8049-7069>)
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between terra versions 1.1-4 dated 2021-03-09 and 1.1-17 dated 2021-04-14
terra-1.1-17/terra/DESCRIPTION | 14 terra-1.1-17/terra/MD5 | 306 +++++---- terra-1.1-17/terra/NAMESPACE | 5 terra-1.1-17/terra/R/Adepracated.R | 12 terra-1.1-17/terra/R/Agenerics.R | 29 terra-1.1-17/terra/R/Arith_generics.R | 53 + terra-1.1-17/terra/R/SpatVectorCollection.R | 5 terra-1.1-17/terra/R/aggregate.R | 8 terra-1.1-17/terra/R/app.R | 76 +- terra-1.1-17/terra/R/arith.R | 10 terra-1.1-17/terra/R/autocor.R | 10 terra-1.1-17/terra/R/cells.R | 15 terra-1.1-17/terra/R/click.R | 99 +-- terra-1.1-17/terra/R/coerce.R | 97 ++- terra-1.1-17/terra/R/colors.R | 5 terra-1.1-17/terra/R/crosstab.R | 2 terra-1.1-17/terra/R/crs.R | 2 terra-1.1-17/terra/R/distance.R | 27 terra-1.1-17/terra/R/draw.R | 72 +- terra-1.1-17/terra/R/extract.R | 164 +++-- terra-1.1-17/terra/R/focal.R | 67 +- terra-1.1-17/terra/R/gdal.R | 5 terra-1.1-17/terra/R/generics.R | 109 ++- terra-1.1-17/terra/R/geom.R | 4 terra-1.1-17/terra/R/init.R | 20 terra-1.1-17/terra/R/interpolate.R | 2 terra-1.1-17/terra/R/lapp.R | 4 terra-1.1-17/terra/R/levels.R | 171 +++-- terra-1.1-17/terra/R/match.R | 17 terra-1.1-17/terra/R/messages.R | 2 terra-1.1-17/terra/R/options.R | 10 terra-1.1-17/terra/R/plot.R | 37 - terra-1.1-17/terra/R/plotExtent.R | 2 terra-1.1-17/terra/R/plotRGB.R | 30 terra-1.1-17/terra/R/plot_cartogram.R | 2 terra-1.1-17/terra/R/plot_legend.R | 3 terra-1.1-17/terra/R/plot_raster.R | 110 ++- terra-1.1-17/terra/R/plot_vector.R | 10 terra-1.1-17/terra/R/predict.R | 33 - terra-1.1-17/terra/R/rapp.R | 80 +- terra-1.1-17/terra/R/rast.R | 62 + terra-1.1-17/terra/R/rasterize.R | 220 ++++-- terra-1.1-17/terra/R/relate.R | 125 ++- terra-1.1-17/terra/R/replace.R | 10 terra-1.1-17/terra/R/show.R | 63 + terra-1.1-17/terra/R/spatDF.R | 6 terra-1.1-17/terra/R/spatvec.R | 21 terra-1.1-17/terra/R/tiles.R |only terra-1.1-17/terra/R/values.R | 86 ++ terra-1.1-17/terra/R/vect.R | 14 terra-1.1-17/terra/R/write.R | 13 terra-1.1-17/terra/R/zonal.R | 47 - terra-1.1-17/terra/R/zzz.R | 10 terra-1.1-17/terra/inst/tinytest/test_global.R |only terra-1.1-17/terra/inst/tinytest/test_matrix-input.R | 38 - terra-1.1-17/terra/man/RGB.Rd |only terra-1.1-17/terra/man/app.Rd | 6 terra-1.1-17/terra/man/area.Rd | 2 terra-1.1-17/terra/man/as.data.frame.Rd | 9 terra-1.1-17/terra/man/as.raster.Rd |only terra-1.1-17/terra/man/as.spatvector.Rd | 3 terra-1.1-17/terra/man/boundaries.Rd | 13 terra-1.1-17/terra/man/boxplot.Rd | 11 terra-1.1-17/terra/man/c.Rd | 4 terra-1.1-17/terra/man/cells.Rd | 27 terra-1.1-17/terra/man/classify.Rd | 2 terra-1.1-17/terra/man/click.Rd | 6 terra-1.1-17/terra/man/colors.Rd | 4 terra-1.1-17/terra/man/distance.Rd | 12 terra-1.1-17/terra/man/dots.Rd | 6 terra-1.1-17/terra/man/draw.Rd | 10 terra-1.1-17/terra/man/extract.Rd | 9 terra-1.1-17/terra/man/factors.Rd | 75 +- terra-1.1-17/terra/man/focal.Rd | 15 terra-1.1-17/terra/man/focalValues.Rd |only terra-1.1-17/terra/man/geometry.Rd | 7 terra-1.1-17/terra/man/init.Rd | 2 terra-1.1-17/terra/man/interpolate.Rd | 102 +-- terra-1.1-17/terra/man/intersect.Rd | 16 terra-1.1-17/terra/man/isvalid.Rd | 2 terra-1.1-17/terra/man/lapp.Rd | 23 terra-1.1-17/terra/man/mask.Rd | 2 terra-1.1-17/terra/man/math.Rd | 1 terra-1.1-17/terra/man/merge.Rd | 4 terra-1.1-17/terra/man/minmax.Rd | 2 terra-1.1-17/terra/man/near.Rd | 13 terra-1.1-17/terra/man/patches.Rd |only terra-1.1-17/terra/man/plot.Rd | 7 terra-1.1-17/terra/man/plotRGB.Rd | 7 terra-1.1-17/terra/man/predict.Rd | 4 terra-1.1-17/terra/man/rapp.Rd | 28 terra-1.1-17/terra/man/rast.Rd | 3 terra-1.1-17/terra/man/rasterize.Rd | 19 terra-1.1-17/terra/man/readwrite.Rd | 3 terra-1.1-17/terra/man/relate.Rd | 14 terra-1.1-17/terra/man/rep.Rd | 2 terra-1.1-17/terra/man/replace-vector.Rd | 5 terra-1.1-17/terra/man/replace.Rd | 2 terra-1.1-17/terra/man/setValues.Rd |only terra-1.1-17/terra/man/subst.Rd |only terra-1.1-17/terra/man/summarize-generics.Rd | 5 terra-1.1-17/terra/man/tapp.Rd | 6 terra-1.1-17/terra/man/terra-package.Rd | 88 +- terra-1.1-17/terra/man/tiles.Rd |only terra-1.1-17/terra/man/values.Rd | 44 - terra-1.1-17/terra/man/vrt.Rd |only terra-1.1-17/terra/man/weighted.mean.Rd |only terra-1.1-17/terra/man/which.Rd |only terra-1.1-17/terra/man/writeRaster.Rd | 6 terra-1.1-17/terra/man/writeVector.Rd | 11 terra-1.1-17/terra/man/xyCellFrom.Rd | 1 terra-1.1-17/terra/src/RcppFunctions.cpp | 9 terra-1.1-17/terra/src/RcppModule.cpp | 80 +- terra-1.1-17/terra/src/aggregate.cpp | 28 terra-1.1-17/terra/src/area.cpp | 5 terra-1.1-17/terra/src/arith.cpp | 41 - terra-1.1-17/terra/src/distRaster.cpp | 333 +++++++--- terra-1.1-17/terra/src/distance.cpp | 90 +- terra-1.1-17/terra/src/distance.h | 20 terra-1.1-17/terra/src/extract.cpp | 586 ++++++++++++++---- terra-1.1-17/terra/src/focal.cpp | 544 ++++++++++++++++- terra-1.1-17/terra/src/gdal_algs.cpp | 426 +++++++++---- terra-1.1-17/terra/src/gdal_multidimensional.cpp | 315 ++++++++- terra-1.1-17/terra/src/gdalio.cpp | 187 +++++ terra-1.1-17/terra/src/gdalio.h | 3 terra-1.1-17/terra/src/geos_methods.cpp | 249 +++++-- terra-1.1-17/terra/src/geos_spat.h | 76 +- terra-1.1-17/terra/src/geosphere.cpp | 173 ++++- terra-1.1-17/terra/src/ggeodesic.c |only terra-1.1-17/terra/src/ggeodesic.h |only terra-1.1-17/terra/src/memory.cpp | 16 terra-1.1-17/terra/src/ncdf_util.cpp | 46 - terra-1.1-17/terra/src/raster_methods.cpp | 604 ++++++++++++++----- terra-1.1-17/terra/src/raster_stats.cpp | 97 ++- terra-1.1-17/terra/src/rasterize.cpp | 596 ++++++++---------- terra-1.1-17/terra/src/rasterize_old.cpp |only terra-1.1-17/terra/src/read.cpp | 12 terra-1.1-17/terra/src/read_gdal.cpp | 260 ++++++-- terra-1.1-17/terra/src/read_ogr.cpp | 4 terra-1.1-17/terra/src/recycle.h | 1 terra-1.1-17/terra/src/spatBase.h | 14 terra-1.1-17/terra/src/spatDataframe.cpp | 32 - terra-1.1-17/terra/src/spatDataframe.h | 8 terra-1.1-17/terra/src/spatFactor.h |only terra-1.1-17/terra/src/spatOptions.cpp | 14 terra-1.1-17/terra/src/spatRaster.cpp | 216 +++++- terra-1.1-17/terra/src/spatRaster.h | 131 +++- terra-1.1-17/terra/src/spatSources.cpp | 38 - terra-1.1-17/terra/src/spatVector.cpp | 60 + terra-1.1-17/terra/src/spatVector.h | 8 terra-1.1-17/terra/src/string_utils.cpp | 16 terra-1.1-17/terra/src/string_utils.h | 5 terra-1.1-17/terra/src/time.cpp | 14 terra-1.1-17/terra/src/time.h | 8 terra-1.1-17/terra/src/vecmath.h | 29 terra-1.1-17/terra/src/vecmathfun.cpp | 11 terra-1.1-17/terra/src/vecmathfun.h | 1 terra-1.1-17/terra/src/vector_methods.cpp | 2 terra-1.1-17/terra/src/write.cpp | 47 - terra-1.1-17/terra/src/write_gdal.cpp | 148 ++-- terra-1.1-17/terra/src/write_ogr.cpp | 164 +++++ terra-1.1-4/terra/man/arith.Rd |only terra-1.1-4/terra/src/spatFactor.hpp |only 163 files changed, 6303 insertions(+), 2551 deletions(-)
Title: A Framework for Clustering Longitudinal Data
Description: A framework for clustering longitudinal datasets in a standardized way. Provides an interface to existing R packages for clustering longitudinal univariate trajectories, facilitating reproducible and transparent analyses. Additionally, standard tools are provided to support cluster analyses, including repeated estimation, model validation, and model assessment. The interface enables users to compare results between methods, and to implement and evaluate new methods with ease.
Author: Niek Den Teuling [aut, cre] (<https://orcid.org/0000-0003-1026-5080>),
Steffen Pauws [ctb],
Edwin van den Heuvel [ctb],
Copyright © 2021 Koninklijke Philips N.V. [cph]
Maintainer: Niek Den Teuling <niek.den.teuling@philips.com>
Diff between latrend versions 1.1.0 dated 2021-03-05 and 1.1.2 dated 2021-04-14
DESCRIPTION | 14 MD5 | 48 +- NAMESPACE | 1 R/assert.R | 10 R/latrend.R | 111 +++-- R/method.R | 2 R/methodAKMedoids.R | 20 - R/methodKML.R | 17 R/random.R | 14 R/zzz.R | 40 ++ build/partial.rdb |binary inst/doc/custom.html | 696 ++++++++++++------------------------- inst/doc/demo.html | 746 +++++++++++++--------------------------- inst/doc/validation.html | 581 +++++++++---------------------- man/interface-akmedoids.Rd | 2 man/latrend-package.Rd | 2 man/latrend-parallel.Rd |only man/latrendBatch.Rd | 6 man/latrendBoot.Rd | 6 man/latrendCV.Rd | 6 man/latrendRep.Rd | 9 man/lcMethodAkmedoids.Rd | 5 tests/testthat/setup-init.R | 7 tests/testthat/test-akmedoids.R | 10 tests/testthat/test-kml.R | 4 tests/testthat/test-parallel.R |only 26 files changed, 905 insertions(+), 1452 deletions(-)
Title: Create Panels of Independent States
Description: Create panel data consisting of independent states from 1816 to
the present. The package includes the Gleditsch & Ward (G&W) and Correlates
of War (COW) lists of independent states, as well as helper functions for
working with state panel data and standardizing other data sources to
create country-year/month/etc. data.
Author: Andreas Beger [cre, aut] (<https://orcid.org/0000-0003-1883-3169>)
Maintainer: Andreas Beger <adbeger@gmail.com>
Diff between states versions 0.3.0 dated 2020-12-11 and 0.3.1 dated 2021-04-14
DESCRIPTION | 7 +- MD5 | 17 ++--- NEWS.md | 11 +++ R/misc.R | 7 +- build/vignette.rds |binary data/gwstates.rda |binary inst/doc/differences-gw-cow.html | 65 ++++----------------- inst/doc/statelists.html | 113 ++++++++++++------------------------- tests/testthat/test-data.R |only tests/testthat/test-plot-missing.R | 8 -- 10 files changed, 84 insertions(+), 144 deletions(-)
Title: Manipulate SVG (Template) Files of Charts
Description: The purpose of this package is to manipulate SVG files that are templates of charts the user wants to produce.
In vector graphics one copes with x-/y-coordinates of elements (e.g. lines, rectangles, text). Their scale is often dependent on the program that is used to produce the graphics.
In applied statistics one usually has numeric values on a fixed scale (e.g. percentage values between 0 and 100) to show in a chart.
Basically, 'svgtools' transforms the statistical values into coordinates and widths/heights of the vector graphics.
This is done by stackedBar() for bar charts, by linesSymbols() for charts with lines and/or symbols (dot markers) and scatterSymbols() for scatterplots.
Author: Konrad Oberwimmer [aut, cre],
Christian Wimmer [aut],
Michael Bruneforth [ctb]
Maintainer: Konrad Oberwimmer <konrad.oberwimmer@iqs.gv.at>
Diff between svgtools versions 1.0.1 dated 2021-03-03 and 1.0.3 dated 2021-04-14
DESCRIPTION | 9 ++++----- MD5 | 5 +++-- NEWS |only R/svgtools.R | 26 ++++++++++++++++++++++++-- 4 files changed, 31 insertions(+), 9 deletions(-)
Title: Rank Aggregation with Partition Mallows Model
Description: Rank aggregation aims to achieve a better ranking list given multiple observations. 'PAMA' implements Partition-Mallows model for rank aggregation where the rankers' quality are different. Both Bayesian inference and Maximum likelihood estimation (MLE) are provided. It can handle partial list as well. When covariates information is available, this package can make inference by incorporating the covariate information. More information can be found in the paper "Integrated Partition-Mallows Model and Its Inference for Rank Aggregation". The paper is accepted by Journal of the American Statistical Association.
Author: Wanchuang Zhu [cre, aut]
Maintainer: Wanchuang Zhu <andy.chou.sub@gmail.com>
Diff between PAMA versions 0.1.1 dated 2020-04-09 and 1.0.0 dated 2021-04-14
DESCRIPTION | 23 ++++++++++++----------- MD5 | 28 +++++++++++++++------------- R/PAMA.B.R | 3 ++- R/PAMA.Cov.R | 3 ++- R/PAMA.F.R | 2 ++ R/PAMA.PL.R | 2 ++ R/gprimegammak.R | 27 +++++++++++++++------------ R/gprimephi.R | 33 ++++++++++++++++----------------- R/gprimeprimegammak.R | 21 +++++++++------------ R/gprimeprimephi.R | 22 ++++++++++++---------- README.md |only man/PAMA.B.Rd | 6 ++++++ man/PAMA.Cov.Rd | 6 ++++++ man/PAMA.F.Rd | 6 ++++++ man/PAMA.PL.Rd | 6 ++++++ src |only 16 files changed, 111 insertions(+), 77 deletions(-)
Title: Estimation and Prediction Methods for High-Dimensional Mixed
Frequency Time Series Data
Description: The 'midasml' package implements estimation and prediction methods for high-dimensional mixed-frequency (MIDAS) time-series and panel data regression models. The regularized MIDAS models are estimated using orthogonal (e.g. Legendre) polynomials and sparse-group LASSO (sg-LASSO) estimator. For more information on the `midasml' approach see Babii, Ghysels, and Striaukas (2021, JBES forthcoming) <doi:10.1080/07350015.2021.1899933>. The package is equipped with the fast implementation of the sg-LASSO estimator by means of proximal block coordinate descent. High-dimensional mixed frequency time-series data can also be easily manipulated with functions provided in the package.
Author: Jonas Striaukas [cre, aut],
Andrii Babii [aut],
Eric Ghysels [aut],
Alex Kostrov [ctb] (Contributions to analytical gradients for
non-linear low-dimensional MIDAS estimation code)
Maintainer: Jonas Striaukas <jonas.striaukas@gmail.com>
Diff between midasml versions 0.0.6 dated 2021-03-12 and 0.1.0 dated 2021-04-14
midasml-0.0.6/midasml/R/RcppExports.R |only midasml-0.0.6/midasml/R/fit_sgl.R |only midasml-0.0.6/midasml/R/help_functions.R |only midasml-0.0.6/midasml/R/loss_functions.R |only midasml-0.0.6/midasml/R/midas_functions.R |only midasml-0.0.6/midasml/R/midasml_functions.R |only midasml-0.0.6/midasml/R/polynomial_functions.R |only midasml-0.0.6/midasml/data/macro_midasml.RData |only midasml-0.0.6/midasml/data/market_ret.RData |only midasml-0.0.6/midasml/data/us_rgdp.RData |only midasml-0.0.6/midasml/man/als_loss.Rd |only midasml-0.0.6/midasml/man/apply_transform.Rd |only midasml-0.0.6/midasml/man/beta_w.Rd |only midasml-0.0.6/midasml/man/cpp_sgl_fit.Rd |only midasml-0.0.6/midasml/man/cpp_sgl_fitpath.Rd |only midasml-0.0.6/midasml/man/cvfolds.Rd |only midasml-0.0.6/midasml/man/expalmon_w.Rd |only midasml-0.0.6/midasml/man/fastals.Rd |only midasml-0.0.6/midasml/man/fastols.Rd |only midasml-0.0.6/midasml/man/fastrq.Rd |only midasml-0.0.6/midasml/man/get_start_midas.Rd |only midasml-0.0.6/midasml/man/getmin_cpp.Rd |only midasml-0.0.6/midasml/man/macro_midasml.Rd |only midasml-0.0.6/midasml/man/midas_ardl.Rd |only midasml-0.0.6/midasml/man/midas_dl.Rd |only midasml-0.0.6/midasml/man/midas_estimate.Rd |only midasml-0.0.6/midasml/man/midas_forecast.Rd |only midasml-0.0.6/midasml/man/midas_pr.Rd |only midasml-0.0.6/midasml/man/midasar_pr.Rd |only midasml-0.0.6/midasml/man/midasml_forecast.Rd |only midasml-0.0.6/midasml/man/mixed_freq_data_mhorizon.Rd |only midasml-0.0.6/midasml/man/mse_loss.Rd |only midasml-0.0.6/midasml/man/panel_sgl.Rd |only midasml-0.0.6/midasml/man/path_calc.Rd |only midasml-0.0.6/midasml/man/path_calc_panel.Rd |only midasml-0.0.6/midasml/man/plot_weights.Rd |only midasml-0.0.6/midasml/man/predict.panel_sgl.Rd |only midasml-0.0.6/midasml/man/predict.reg_sgl.Rd |only midasml-0.0.6/midasml/man/qtarget.sort_midasml.Rd |only midasml-0.0.6/midasml/man/rbeta_w.Rd |only midasml-0.0.6/midasml/man/reg_sgl.Rd |only midasml-0.0.6/midasml/man/rq_loss.Rd |only midasml-0.0.6/midasml/man/sgl_fit.Rd |only midasml-0.0.6/midasml/man/transform_dt.Rd |only midasml-0.0.6/midasml/man/updatecvmsd.Rd |only midasml-0.0.6/midasml/src/Makevars |only midasml-0.0.6/midasml/src/Makevars.win |only midasml-0.0.6/midasml/src/RcppExports.cpp |only midasml-0.0.6/midasml/src/fit_sgl.cpp |only midasml-0.0.6/midasml/src/ld_estim.cpp |only midasml-0.1.0/midasml/DESCRIPTION | 30 ++-- midasml-0.1.0/midasml/MD5 | 125 ++++++++---------- midasml-0.1.0/midasml/NAMESPACE | 34 +--- midasml-0.1.0/midasml/R/cv.panel.sglfit.R |only midasml-0.1.0/midasml/R/cv.sglfit.R |only midasml-0.1.0/midasml/R/data.R | 82 ++++++++--- midasml-0.1.0/midasml/R/date.functions.R |only midasml-0.1.0/midasml/R/ic.panel.sglfit.R |only midasml-0.1.0/midasml/R/ic.sglfit.R |only midasml-0.1.0/midasml/R/midas.polynomials.R |only midasml-0.1.0/midasml/R/midas.solvers.R |only midasml-0.1.0/midasml/R/predict.sglpath.R |only midasml-0.1.0/midasml/R/reg.midas.R |only midasml-0.1.0/midasml/R/reg.panel.sgl.R |only midasml-0.1.0/midasml/R/reg.sgl.R |only midasml-0.1.0/midasml/R/sglfit.R |only midasml-0.1.0/midasml/R/sglfitpath.R |only midasml-0.1.0/midasml/R/utilities.R |only midasml-0.1.0/midasml/README.md |only midasml-0.1.0/midasml/build/partial.rdb |binary midasml-0.1.0/midasml/data/alfred_vintages.rda |only midasml-0.1.0/midasml/data/market_ret.rda |only midasml-0.1.0/midasml/data/rgdp_dates.rda |only midasml-0.1.0/midasml/data/rgdp_vintages.rda |only midasml-0.1.0/midasml/data/us_rgdp.rda |only midasml-0.1.0/midasml/man/alfred_vintages.Rd |only midasml-0.1.0/midasml/man/cv.panel.sglfit.Rd |only midasml-0.1.0/midasml/man/cv.panel.sglpath.Rd |only midasml-0.1.0/midasml/man/cv.sglfit.Rd |only midasml-0.1.0/midasml/man/cv.sglpath.Rd |only midasml-0.1.0/midasml/man/data_freq.Rd | 2 midasml-0.1.0/midasml/man/dateMatch.Rd | 2 midasml-0.1.0/midasml/man/date_vec.Rd | 2 midasml-0.1.0/midasml/man/diff_time_mf.Rd | 6 midasml-0.1.0/midasml/man/gb.Rd | 2 midasml-0.1.0/midasml/man/ic.panel.sglfit.Rd |only midasml-0.1.0/midasml/man/ic.pen.Rd |only midasml-0.1.0/midasml/man/ic.sglfit.Rd |only midasml-0.1.0/midasml/man/lag_num.Rd | 2 midasml-0.1.0/midasml/man/lb.Rd | 2 midasml-0.1.0/midasml/man/market_ret.Rd | 2 midasml-0.1.0/midasml/man/midas.ardl.Rd |only midasml-0.1.0/midasml/man/mixed_freq_data.Rd | 2 midasml-0.1.0/midasml/man/mixed_freq_data_single.Rd | 2 midasml-0.1.0/midasml/man/mode_midasml.Rd | 2 midasml-0.1.0/midasml/man/monthBegin.Rd | 2 midasml-0.1.0/midasml/man/monthEnd.Rd | 2 midasml-0.1.0/midasml/man/predict.sglpath.Rd |only midasml-0.1.0/midasml/man/reg.panel.sgl.Rd |only midasml-0.1.0/midasml/man/reg.sgl.Rd |only midasml-0.1.0/midasml/man/rgdp_dates.Rd |only midasml-0.1.0/midasml/man/rgdp_vintages.Rd |only midasml-0.1.0/midasml/man/sglfit.Rd |only midasml-0.1.0/midasml/man/us_rgdp.Rd | 10 - midasml-0.1.0/midasml/src/auxiliary.f90 |only midasml-0.1.0/midasml/src/maxlambda.f90 |only midasml-0.1.0/midasml/src/panelsglfitF.f90 |only midasml-0.1.0/midasml/src/sglfitF.f90 |only 108 files changed, 168 insertions(+), 143 deletions(-)
Title: Download and Visualize Essential Climate Change Data
Description: Provides easy access to essential climate change datasets to non-climate experts. Users can download the latest raw data from authoritative sources and view it via pre-defined 'ggplot2' charts. Datasets include atmospheric CO2, instrumental and proxy temperature records, sea levels, Arctic/Antarctic sea-ice, Hurricanes, and Paleoclimate data. Sources include: NOAA Mauna Loa Laboratory <https://www.esrl.noaa.gov/gmd/ccgg/trends/data.html>, NASA GISTEMP <https://data.giss.nasa.gov/gistemp/>, National Snow and Sea Ice Data Center <https://nsidc.org/data/seaice_index/archives>, CSIRO <https://research.csiro.au/slrwavescoast/sea-level/measurements-and-data/sea-level-data/>, NOAA Laboratory for Satellite Altimetry <https://www.star.nesdis.noaa.gov/socd/lsa/SeaLevelRise/> and HURDAT Atlantic Hurricane Database <https://www.aoml.noaa.gov/hrd/hurdat/Data_Storm.html>, Vostok Paleo carbon dioxide and temperature data: <https://cdiac.ess-dive.lbl.gov/trends/co2/vostok.html>.
Author: Hernando Cortina [aut, cre] (<https://orcid.org/0000-0001-6790-4870>)
Maintainer: Hernando Cortina <hch@alum.mit.edu>
Diff between hockeystick versions 0.4.0 dated 2021-02-05 and 0.5.0 dated 2021-04-14
DESCRIPTION | 13 - MD5 | 74 +++++----- NAMESPACE | 5 NEWS.md | 50 +++---- R/2kyears_temp.R | 250 ++++++++++++++++++------------------ R/carbon.R | 4 R/data_cache.R | 7 - R/globalvars.R | 2 R/hurricanes.R |only R/icecurves.R | 9 - R/instrumental_temp.R | 8 - R/paleo.R | 4 R/seaice.R | 11 + R/sealevel.R | 26 +-- R/zzz.R | 1 README.md | 38 ++++- build/partial.rdb |binary inst/WORDLIST | 4 man/figures/README-carbon-1.png |binary man/figures/README-grid-1.png |binary man/figures/README-hurricanes-1.png |only man/figures/README-hurricanes-2.png |only man/figures/README-icecurves-1.png |binary man/figures/README-si-1.png |binary man/figures/README-sl-1.png |binary man/figures/README-stripes-1.png |binary man/figures/README-stripes2-1.png |binary man/figures/README-temp-1.png |binary man/get_carbon.Rd | 4 man/get_hurricanes.Rd |only man/get_icecurves.Rd | 4 man/get_paleo.Rd | 4 man/get_seaice.Rd | 4 man/get_sealevel.Rd | 12 - man/get_temp.Rd | 6 man/get_temp2k.Rd | 6 man/hockeystick-package.Rd | 2 man/plot_hurricane_nrg.Rd |only man/plot_hurricanes.Rd |only man/plot_temp.Rd | 2 man/plot_temp2k.Rd | 2 41 files changed, 302 insertions(+), 250 deletions(-)
Title: Estimation Methods for Markets in Equilibrium and Disequilibrium
Description: Provides estimation methods for markets in equilibrium and
disequilibrium. Supports the estimation of an equilibrium and
four disequilibrium models with both correlated and independent shocks.
Also provides post-estimation analysis tools, such as aggregation,
marginal effect, and shortage calculations. The estimation methods are
based on full information maximum likelihood techniques given in
Maddala and Nelson (1974) <doi:10.2307/1914215>. They are implemented
using the analytic derivative expressions calculated in
Karapanagiotis (2020) <doi:10.2139/ssrn.3525622>. Standard
errors can be estimated by adjusting for heteroscedasticity or clustering.
The equilibrium estimation constitutes a case of a system of linear,
simultaneous equations. Instead, the disequilibrium models replace the
market-clearing condition with a non-linear,
short-side rule and allow for different specifications of price dynamics.
Author: Pantelis Karapanagiotis [aut, cre]
(<https://orcid.org/0000-0001-9871-1908>)
Maintainer: Pantelis Karapanagiotis <pikappa.devel@gmail.com>
Diff between diseq versions 0.1.5 dated 2021-03-02 and 0.2.1 dated 2021-04-14
diseq-0.1.5/diseq/R/derivatives_basic.R |only diseq-0.1.5/diseq/R/derivatives_deterministic_adjustment.R |only diseq-0.1.5/diseq/R/derivatives_directional.R |only diseq-0.1.5/diseq/R/derivatives_fiml.R |only diseq-0.1.5/diseq/R/derivatives_stochastic_adjustment.R |only diseq-0.1.5/diseq/R/system_fiml.R |only diseq-0.1.5/diseq/man/figures/equilibrium.png |only diseq-0.1.5/diseq/man/get_aggregate_demand.Rd |only diseq-0.1.5/diseq/man/get_aggregate_supply.Rd |only diseq-0.1.5/diseq/man/get_demand_descriptives.Rd |only diseq-0.1.5/diseq/man/get_demanded_quantities.Rd |only diseq-0.1.5/diseq/man/get_marginal_effect_at_mean.Rd |only diseq-0.1.5/diseq/man/get_mean_marginal_effect.Rd |only diseq-0.1.5/diseq/man/get_model_description.Rd |only diseq-0.1.5/diseq/man/get_normalized_shortages.Rd |only diseq-0.1.5/diseq/man/get_number_of_observations.Rd |only diseq-0.1.5/diseq/man/get_prefixed_const_variable.Rd |only diseq-0.1.5/diseq/man/get_prefixed_control_variables.Rd |only diseq-0.1.5/diseq/man/get_prefixed_independent_variables.Rd |only diseq-0.1.5/diseq/man/get_prefixed_price_variable.Rd |only diseq-0.1.5/diseq/man/get_prefixed_variance_variable.Rd |only diseq-0.1.5/diseq/man/get_relative_shortages.Rd |only diseq-0.1.5/diseq/man/get_shortage_probabilities.Rd |only diseq-0.1.5/diseq/man/get_supplied_quantities.Rd |only diseq-0.1.5/diseq/man/get_supply_descriptives.Rd |only diseq-0.2.1/diseq/DESCRIPTION | 36 diseq-0.2.1/diseq/MD5 | 162 - diseq-0.2.1/diseq/NAMESPACE | 36 diseq-0.2.1/diseq/NEWS.md | 58 diseq-0.2.1/diseq/R/data.R |only diseq-0.2.1/diseq/R/diseq_basic.R | 164 - diseq-0.2.1/diseq/R/diseq_deterministic_adjustment.R | 19 diseq-0.2.1/diseq/R/diseq_directional.R | 246 -- diseq-0.2.1/diseq/R/diseq_stochastic_adjustment.R | 70 diseq-0.2.1/diseq/R/disequilibrium_model.R | 243 +- diseq-0.2.1/diseq/R/equation_base.R | 81 diseq-0.2.1/diseq/R/equation_deterministic_adjustment.R | 23 diseq-0.2.1/diseq/R/equation_directional.R | 8 diseq-0.2.1/diseq/R/equilibrium_model.R | 222 -- diseq-0.2.1/diseq/R/gradient_basic.R |only diseq-0.2.1/diseq/R/gradient_deterministic_adjustment.R |only diseq-0.2.1/diseq/R/gradient_directional.R |only diseq-0.2.1/diseq/R/gradient_equilibrium.R |only diseq-0.2.1/diseq/R/gradient_stochastic_adjustment.R |only diseq-0.2.1/diseq/R/hessian_basic.R |only diseq-0.2.1/diseq/R/hessian_directional.R |only diseq-0.2.1/diseq/R/likelihood_basic.R |only diseq-0.2.1/diseq/R/likelihood_deterministic_adjustment.R |only diseq-0.2.1/diseq/R/likelihood_directional.R |only diseq-0.2.1/diseq/R/likelihood_equilibrium.R |only diseq-0.2.1/diseq/R/likelihood_stochastic_adjustment.R |only diseq-0.2.1/diseq/R/market_model.R | 990 +++++----- diseq-0.2.1/diseq/R/model_simulation.R | 418 ++-- diseq-0.2.1/diseq/R/system_base.R | 180 - diseq-0.2.1/diseq/R/system_basic.R | 43 diseq-0.2.1/diseq/R/system_deterministic_adjustment.R | 238 -- diseq-0.2.1/diseq/R/system_directional.R | 10 diseq-0.2.1/diseq/R/system_equilibrium.R |only diseq-0.2.1/diseq/R/system_stochastic_adjustment.R | 351 --- diseq-0.2.1/diseq/README.md | 27 diseq-0.2.1/diseq/build/partial.rdb |binary diseq-0.2.1/diseq/configure | 18 diseq-0.2.1/diseq/configure.ac | 2 diseq-0.2.1/diseq/data |only diseq-0.2.1/diseq/inst/doc/basic_usage.R | 70 diseq-0.2.1/diseq/inst/doc/basic_usage.Rmd | 70 diseq-0.2.1/diseq/inst/doc/basic_usage.html | 318 +-- diseq-0.2.1/diseq/inst/doc/market_clearing_assessment.R | 18 diseq-0.2.1/diseq/inst/doc/market_clearing_assessment.Rmd | 18 diseq-0.2.1/diseq/inst/doc/market_clearing_assessment.html | 258 +- diseq-0.2.1/diseq/man/aggregate_demand.Rd |only diseq-0.2.1/diseq/man/aggregate_supply.Rd |only diseq-0.2.1/diseq/man/demand_descriptives.Rd |only diseq-0.2.1/diseq/man/demanded_quantities.Rd |only diseq-0.2.1/diseq/man/diseq_basic-class.Rd | 2 diseq-0.2.1/diseq/man/diseq_deterministic_adjustment-class.Rd | 2 diseq-0.2.1/diseq/man/diseq_directional-class.Rd | 2 diseq-0.2.1/diseq/man/diseq_stochastic_adjustment-class.Rd | 2 diseq-0.2.1/diseq/man/equilibrium_model-class.Rd | 16 diseq-0.2.1/diseq/man/estimate.Rd | 39 diseq-0.2.1/diseq/man/figures/equilibrium_model.png |only diseq-0.2.1/diseq/man/has_shortage.Rd | 2 diseq-0.2.1/diseq/man/houses.Rd |only diseq-0.2.1/diseq/man/initialize_market_model.Rd | 12 diseq-0.2.1/diseq/man/marginal_effect_at_mean.Rd |only diseq-0.2.1/diseq/man/maximize_log_likelihood.Rd | 22 diseq-0.2.1/diseq/man/mean_marginal_effect.Rd |only diseq-0.2.1/diseq/man/model_description.Rd |only diseq-0.2.1/diseq/man/normalized_shortages.Rd |only diseq-0.2.1/diseq/man/number_of_observations.Rd |only diseq-0.2.1/diseq/man/plot.Rd | 16 diseq-0.2.1/diseq/man/prefixed_const_variable.Rd |only diseq-0.2.1/diseq/man/prefixed_control_variables.Rd |only diseq-0.2.1/diseq/man/prefixed_independent_variables.Rd |only diseq-0.2.1/diseq/man/prefixed_price_variable.Rd |only diseq-0.2.1/diseq/man/prefixed_variance_variable.Rd |only diseq-0.2.1/diseq/man/relative_shortages.Rd |only diseq-0.2.1/diseq/man/scores.Rd | 2 diseq-0.2.1/diseq/man/shortage_probabilities.Rd |only diseq-0.2.1/diseq/man/show.Rd | 20 diseq-0.2.1/diseq/man/summary.Rd | 20 diseq-0.2.1/diseq/man/supplied_quantities.Rd |only diseq-0.2.1/diseq/man/supply_descriptives.Rd |only diseq-0.2.1/diseq/src/equilibrium.cpp | 34 diseq-0.2.1/diseq/tests/testthat/helper-common.R | 262 +- diseq-0.2.1/diseq/tests/testthat/test-basic.R | 60 diseq-0.2.1/diseq/tests/testthat/test-deterministic_adjustment.R | 61 diseq-0.2.1/diseq/tests/testthat/test-directional.R | 58 diseq-0.2.1/diseq/tests/testthat/test-equilibrium.R | 86 diseq-0.2.1/diseq/tests/testthat/test-stochastic_adjustment.R | 58 diseq-0.2.1/diseq/vignettes/basic_usage.Rmd | 70 diseq-0.2.1/diseq/vignettes/market_clearing_assessment.Rmd | 18 112 files changed, 2226 insertions(+), 3035 deletions(-)
Title: Itrax Data Analysis Tools
Description: Parse, trim, join, visualise and analyse data from Itrax sediment core multi-parameter
scanners manufactured by Cox Analytical Systems, Sweden. Functions are provided for parsing
XRF-peak area files, line-scan optical images, and radiographic images, alongside accompanying metadata.
A variety of data wrangling tasks like trimming, joining and reducing XRF-peak area data are simplified.
Principle component analysis (PCA), cluster analysis and associated multivariate methods are
implemented with appropriate data transformation.
Author: Thomas Bishop
Maintainer: Thomas Bishop <tombishopemail@gmail.com>
Diff between itraxR versions 1.1 dated 2021-03-01 and 1.2 dated 2021-04-14
DESCRIPTION | 8 ++++---- MD5 | 12 +++++++----- NAMESPACE | 3 +++ R/itrax_correlation.r | 18 ++++++++++++------ R/itrax_ordination.r | 13 ++++++++++--- R/itrax_restspectra.r |only R/itrax_section.r | 6 +++--- man/itrax_restspectra.Rd |only 8 files changed, 39 insertions(+), 21 deletions(-)
Title: Generate Treasury Total Returns from Yield Data
Description: Generate Total Returns (TR) from bond yield data with fixed maturity, e.g.
reported treasury yields. The generated TR series are very close to alternative series
that can be purchased (e.g. CRSP, Bloomberg), suggesting they are a high-quality
alternative for those, see Swinkels (2019) <doi:10.3390/data4030091>.
Author: Martin Geissmann [aut, cre]
Maintainer: Martin Geissmann <mg@econovo.ch>
Diff between treasuryTR versions 0.1.1 dated 2021-03-11 and 0.1.2 dated 2021-04-14
DESCRIPTION | 7 +--- MD5 | 12 +++--- README.md | 20 +++++++++++ inst/doc/treasuryTR.R | 3 + inst/doc/treasuryTR.Rmd | 3 + inst/doc/treasuryTR.html | 81 ++++++++++++++++++++++++----------------------- vignettes/treasuryTR.Rmd | 3 + 7 files changed, 79 insertions(+), 50 deletions(-)
Title: Correct Bias in DNA Methylation Analyses
Description: Implementation of the algorithms (with minor modifications)
to correct bias in quantitative DNA methylation analyses as described
by Moskalev et al. (2011) <doi:10.1093/nar/gkr213>.
Author: Lorenz A. Kapsner [cre, aut, cph]
(<https://orcid.org/0000-0003-1866-860X>),
Evgeny A. Moskalev [aut]
Maintainer: Lorenz A. Kapsner <lorenz.kapsner@gmail.com>
Diff between rBiasCorrection versions 0.2.8 dated 2021-03-28 and 0.2.9 dated 2021-04-14
DESCRIPTION | 6 MD5 | 18 R/calibration_plot.R | 272 +++++------ R/create_exampleplot.R | 233 +++++----- R/createbarerrorplots.R | 672 ++++++++++++++--------------- R/regression_utility.R | 555 ++++++++++++----------- R/utils.R | 546 +++++++++++------------ build/partial.rdb |binary inst/doc/rBiasCorrection_benchmarking.html | 4 inst/doc/rBiasCorrection_howto.html | 12 10 files changed, 1164 insertions(+), 1154 deletions(-)
More information about rBiasCorrection at CRAN
Permanent link
Title: Cache 'CRAN'-Like Metadata and R Packages
Description: Metadata and package cache for CRAN-like repositories.
This is a utility package to be used by package management tools
that want to take advantage of caching.
Author: Gábor Csárdi [aut, cre]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between pkgcache versions 1.2.0 dated 2021-03-01 and 1.2.1 dated 2021-04-14
pkgcache-1.2.0/pkgcache/tests |only pkgcache-1.2.1/pkgcache/DESCRIPTION | 11 +-- pkgcache-1.2.1/pkgcache/MD5 | 83 +----------------------- pkgcache-1.2.1/pkgcache/NEWS.md | 4 + pkgcache-1.2.1/pkgcache/README.md | 2 pkgcache-1.2.1/pkgcache/man/pkgcache-package.Rd | 2 6 files changed, 15 insertions(+), 87 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-06-08 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-02-11 0.2.1
2021-01-04 0.2.0
2020-09-29 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-09 0.3-3
2021-01-08 0.3-2
2021-01-07 0.3-1
2021-01-05 0.3-0
2020-11-30 0.2-1
2020-10-20 0.2-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-31 0.3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-30 0.3.0
2020-01-24 0.2.5
2019-06-03 0.2.4
Title: Flexible Tool for Bias Detection, Visualization, and Mitigation
Description: Measure fairness metrics in one place for many models. Check how big is model's bias towards different races, sex, nationalities etc. Use measures such as Statistical Parity, Equal odds to detect the discrimination against unprivileged groups. Visualize the bias using heatmap, radar plot, biplot, bar chart (and more!). There are various pre-processing and post-processing bias mitigation algorithms implemented. Find more details in (Wiśniewski, Biecek (2021)) <arXiv:2104.00507>.
Author: Jakub Wiśniewski [aut, cre],
Przemysław Biecek [aut] (<https://orcid.org/0000-0001-8423-1823>)
Maintainer: Jakub Wiśniewski <jakwisn@gmail.com>
Diff between fairmodels versions 0.2.4 dated 2020-12-12 and 1.0.1 dated 2021-04-14
DESCRIPTION | 10 +- MD5 | 131 +++++++++++++++++----------------- NEWS.md | 14 +++ R/all_cutoffs.R | 24 ++++-- R/ceteris_paribus_cutoff.R | 15 +++ R/choose_metric.R | 19 +++- R/expand_fairness_object.R | 15 ++- R/fairness_check.R | 29 +++++-- R/fairness_heatmap.R | 3 R/fairness_pca.R | 3 R/fairness_radar.R | 23 ++++- R/group_metric.R | 19 +++- R/metric_scores.R | 19 +++- R/performance_and_fairness.R | 18 +++- R/plot_all_cutoffs.R | 28 ++++--- R/plot_ceteris_paribus_cutoff.R | 39 ++++++---- R/plot_chosen_metric.R | 19 +++- R/plot_fairness_heatmap.R | 4 - R/plot_fairness_object.R | 14 ++- R/plot_fairness_pca.R | 3 R/plot_fairness_radar.R | 26 +++++- R/plot_group_metric.R | 21 ++++- R/plot_metric_scores.R | 20 +++-- R/plot_performance_and_fairness.R | 19 +++- R/plot_stacked_metrics.R | 19 +++- R/print.R | 33 +++++--- R/resample.R | 38 ++++++++- R/stack_metrics.R | 18 +++- README.md | 9 +- inst/CITATION |only inst/WORDLIST | 2 man/all_cutoffs.Rd | 24 ++++-- man/ceteris_paribus_cutoff.Rd | 15 +++ man/choose_metric.Rd | 19 +++- man/expand_fairness_object.Rd | 15 ++- man/fairness_check.Rd | 23 +++-- man/fairness_heatmap.Rd | 3 man/fairness_pca.Rd | 3 man/fairness_radar.Rd | 23 ++++- man/group_metric.Rd | 19 +++- man/metric_scores.Rd | 19 +++- man/performance_and_fairness.Rd | 18 +++- man/plot_all_cutoffs.Rd | 28 ++++--- man/plot_ceteris_paribus_cutoff.Rd | 39 ++++++---- man/plot_chosen_metric.Rd | 19 +++- man/plot_fairness_heatmap.Rd | 4 - man/plot_fairness_object.Rd | 14 ++- man/plot_fairness_pca.Rd | 3 man/plot_fairness_radar.Rd | 26 +++++- man/plot_group_metric.Rd | 21 ++++- man/plot_metric_scores.Rd | 20 +++-- man/plot_performance_and_fairness.Rd | 19 +++- man/plot_stacked_barplot.Rd | 18 +++- man/plot_stacked_metrics.Rd | 18 +++- man/print_all_cutoffs.Rd | 3 man/print_ceteris_paribus_cutoff.Rd | 3 man/print_chosen_metric.Rd | 3 man/print_fairness_heatmap.Rd | 3 man/print_fairness_object.Rd | 3 man/print_fairness_pca.Rd | 3 man/print_fairness_radar.Rd | 3 man/print_group_metric.Rd | 3 man/print_metric_scores.Rd | 3 man/print_performance_and_fairness.Rd | 3 man/print_stacked_metrics.Rd | 3 man/resample.Rd | 38 ++++++++- tests/testthat/test_fairness_object.R | 8 ++ 67 files changed, 824 insertions(+), 319 deletions(-)
Title: Client for Dataverse 4+ Repositories
Description: Provides access to Dataverse APIs <https://dataverse.org/> (versions 4-5),
enabling data search, retrieval, and deposit. For Dataverse versions <= 3.0,
use the archived 'dvn' package <https://cran.r-project.org/package=dvn>.
Author: Will Beasley [aut, cre] (<https://orcid.org/0000-0002-5613-5006>),
Thomas J. Leeper [aut] (<https://orcid.org/0000-0003-4097-6326>),
Shiro Kuriwaki [aut] (<https://orcid.org/0000-0002-5687-2647>),
Philip Durbin [aut] (<https://orcid.org/0000-0002-9528-9470>),
Sebastian Karcher [aut] (<https://orcid.org/0000-0001-8249-7388>),
Jan Kanis [ctb],
Edward Jee [ctb]
Maintainer: Will Beasley <wibeasley@hotmail.com>
Diff between dataverse versions 0.3.7 dated 2021-03-08 and 0.3.8 dated 2021-04-14
DESCRIPTION | 77 ++++----- MD5 | 52 +++--- NEWS.md | 20 ++ R/get_dataset.R | 35 +--- R/get_dataverse.R | 27 --- R/get_file_by_id.R | 2 README.md | 10 - build/vignette.rds |binary inst/CITATION | 18 +- inst/doc/A-introduction.html | 13 + inst/doc/B-search.html | 115 +++++++------- inst/doc/C-download.html | 13 + man/get_dataset.Rd | 35 +--- man/get_dataverse.Rd | 28 --- tests/testthat/tests-dataset_files.R | 3 tests/testthat/tests-dataset_metadata.R | 6 tests/testthat/tests-dataverse_contents.R | 6 tests/testthat/tests-get_dataframe-dataframe-basketball.R | 9 - tests/testthat/tests-get_dataframe-original-basketball.R | 18 +- tests/testthat/tests-get_dataset.R | 3 tests/testthat/tests-get_dataverse.R | 6 tests/testthat/tests-get_file.R | 17 +- tests/testthat/tests-get_file_metadata.R | 8 tests/testthat/tests-list_datasets.R | 6 tests/testthat/tests-native-api.R | 12 - tests/testthat/tests-search.R | 30 +-- tests/testthat/tests-sword.R | 6 27 files changed, 289 insertions(+), 286 deletions(-)
Title: Prepare Figure Region for Base Graphics
Description: A figure region is prepared, creating a plot region with suitable background color, grid lines or shadings, and providing axes and labeling if not suppressed. Subsequently, information carrying graphics elements can be added (points, lines, barplot with add=TRUE and so forth).
Author: Ulrike Groemping
Maintainer: Ulrike Groemping <groemping@beuth-hochschule.de>
Diff between prepplot versions 0.7 dated 2018-04-05 and 1.0 dated 2021-04-14
DESCRIPTION | 8 +++--- MD5 | 17 +++++++------- R/prepplot.R | 4 +-- build/vignette.rds |binary inst/NEWS |only inst/doc/prepplotOverview.R | 27 ++++++++++++++-------- inst/doc/prepplotOverview.Rmd | 49 +++++++++++++++++++++++++---------------- inst/doc/prepplotOverview.pdf |binary man/prepplot.Rd | 4 +-- vignettes/prepplotOverview.Rmd | 49 +++++++++++++++++++++++++---------------- 10 files changed, 94 insertions(+), 64 deletions(-)