Title: Proteomics Data Analysis Functions
Description: Data analysis of proteomics experiments by mass spectrometry is supported by this collection of functions mostly dedicated to the analysis of (bottom-up) quantitative (XIC) data.
Fasta-formatted proteomes (eg from UniProt Consortium <doi:10.1093/nar/gky1049>) can be read with automatic parsing and multiple annotation types (like species origin, abbreviated gene names, etc) extracted.
Quantitative proteomics measurements frequently contain multiple NA values, due to physical absence of given peptides in some samples, limitations in sensitivity or other reasons.
The functions provided here help to inspect graphically the data to investigate the nature of NA-values via their respective replicate measurements and to help/confirm the choice of NA-replacement by low random values.
Dedicated filtering and statistical testing using the framework of package 'limma' <doi:10.18129/B9.bioc.limma> can be run, enhanced by multiple rounds of NA-replacements to provide robustness towards rare stochastic events.
Multi-species samples, as frequently used in benchmark-tests (eg Navarro et al 2016 <doi:10.1038/nbt.3685>, Ramus et al 2016 <doi:10.1016/j.jprot.2015.11.011>), can be run with special options separating the data into sub-groups during normalization and testing.
As example the data-set from Ramus et al 2016 <doi:10.1016/j.jprot.2015.11.011>) is provided quantified by MaxQuant (Tyanova et al 2016 <doi:10.1038/nprot.2016.136>), ProteomeDiscoverer,
OpenMS (<doi:10.1038/nmeth.3959>) and Proline (Bouyssie et al 2020 <doi:10.1093/bioinformatics/btaa118>).
Subsequently, ROC curves (Hand and Till 2001 <doi:10.1023/A:1010920819831>) can be constructed to compare multiple analysis approaches.
Author: Wolfgang Raffelsberger [aut, cre]
Maintainer: Wolfgang Raffelsberger <w.raffelsberger@gmail.com>
Diff between wrProteo versions 1.4.0 dated 2021-03-10 and 1.4.1 dated 2021-04-15
DESCRIPTION | 9 MD5 | 41 NAMESPACE | 2 R/VolcanoPlotW2.R | 28 R/foldChangeArrow2.R |only R/matrixNAneighbourImpute.R | 2 R/readMassChroQFile.R |only R/readOpenMSFile.R | 2 R/summarizeForROC.R | 99 +- build/vignette.rds |binary inst/doc/wrProteoVignette1.R | 14 inst/doc/wrProteoVignette1.Rmd | 95 +- inst/doc/wrProteoVignette1.html | 262 +++-- inst/doc/wrProteoVignetteUPS1.R | 183 ++-- inst/doc/wrProteoVignetteUPS1.Rmd | 223 ++-- inst/doc/wrProteoVignetteUPS1.html | 1667 ++++++++++++++++++------------------- inst/extdata/tinyMC.RData |only man/VolcanoPlotW2.Rd | 15 man/foldChangeArrow2.Rd |only man/matrixNAneighbourImpute.Rd | 2 man/readMassChroQFile.Rd |only man/summarizeForROC.Rd | 21 vignettes/wrProteoVignette1.Rmd | 95 +- vignettes/wrProteoVignetteUPS1.Rmd | 223 ++-- 24 files changed, 1643 insertions(+), 1340 deletions(-)
Title: Fair Models in Machine Learning
Description: Fair machine learning regression models which take sensitive attributes into account in
model estimation. Currently implementing Komiyama et al. (2018)
<http://proceedings.mlr.press/v80/komiyama18a/komiyama18a.pdf> and an improvement over the former
that uses ridge regression to enforce fairness.
Author: Marco Scutari [aut, cre]
Maintainer: Marco Scutari <marco.scutari@gmail.com>
Diff between fairml versions 0.3 dated 2020-09-09 and 0.4 dated 2021-04-15
Changelog | 9 +++ DESCRIPTION | 13 +++-- MD5 | 47 +++++++++++--------- NAMESPACE | 10 +++- R/crossvalidation.R | 84 ++++++++++++++++++++++++++++-------- R/deviance-and-likelihood.R | 12 +++++ R/diagnostic-plots.R |only R/frrm.R |only R/globals.R | 8 ++- R/nclm.R | 78 +++++++++++++++++++++++++-------- R/predict.R | 34 +++++++++++--- R/print-and-summary.R | 24 ++++++++++ R/profile-plots.R | 39 ++++++++-------- R/sanitization-arguments.R | 18 +++---- R/sanitization-types.R | 2 data/german.credit.rda |only man/communities.and.crime.Rd | 6 +- man/compas.Rd | 12 +++-- man/fairml-package.Rd | 4 + man/fairml.cv.Rd | 35 +++++++++++---- man/fairness.profile.plot.Rd | 14 +++--- man/frrm.Rd |only man/german.credit.Rd |only man/law.school.admissions.Rd | 10 ++-- man/methods.Rd | 6 ++ man/national.longitudinal.survey.Rd | 11 +++- man/nclm.Rd | 9 ++- 27 files changed, 346 insertions(+), 139 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-05-16 1.1.6
2015-11-19 1.1.5
2015-07-30 1.1.4
2014-07-13 1.1.2
2014-04-14 1.1.1
2014-02-20 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-07-29 1.0
Title: Securely Wrangle Dataset According to Data Usage Agreement
Description: Create shareable data sets from raw data files that
contain protected elements. Relying on master crosswalk
files that list restricted variables, package functions
warn users about possible violations of data usage
agreement and prevent writing protected elements.
Author: Benjamin Skinner [aut, cre] (<https://orcid.org/0000-0002-0337-7415>)
Maintainer: Benjamin Skinner <btskinner@coe.ufl.edu>
Diff between duawranglr versions 0.6.5 dated 2019-11-19 and 0.6.7 dated 2021-04-15
duawranglr-0.6.5/duawranglr/tests/testthat/testdata/admin_data.sas7bdat |only duawranglr-0.6.5/duawranglr/tests/testthat/testdata/dua_one.sas7bdat |only duawranglr-0.6.7/duawranglr/DESCRIPTION | 9 duawranglr-0.6.7/duawranglr/MD5 | 16 duawranglr-0.6.7/duawranglr/NEWS.md | 8 duawranglr-0.6.7/duawranglr/build/vignette.rds |binary duawranglr-0.6.7/duawranglr/inst/doc/duawranglr.html | 337 --- duawranglr-0.6.7/duawranglr/inst/doc/securing_data.html | 1054 ++++------ duawranglr-0.6.7/duawranglr/tests/testthat/test-read_dua_file.R | 9 duawranglr-0.6.7/duawranglr/tests/testthat/test-sreader__.R | 10 10 files changed, 540 insertions(+), 903 deletions(-)
Title: Plotting and Comparing Means with Violin Plots
Description: Produces violin plots with optional mean comparison with Tukey's honest significant difference and linear regression. This package aims to be a simple and quick visualization tool for comparing means and assessing trends of categorical factors.
Author: Jefferson Paril <jeffersonparil@gmail.com>
Maintainer: Jefferson Paril <jeffersonparil@gmail.com>
Diff between violinplotter versions 2.0.0 dated 2021-03-29 and 2.0.1 dated 2021-04-15
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 6 ++---- R/plot_regression_line.R | 2 +- R/violinplotter.R | 1 + 5 files changed, 11 insertions(+), 12 deletions(-)
Title: Easily Install and Load the 'Tidyverse'
Description: The 'tidyverse' is a set of packages that work in harmony
because they share common data representations and 'API' design. This
package is designed to make it easy to install and load multiple
'tidyverse' packages in a single step. Learn more about the
'tidyverse' at <https://www.tidyverse.org>.
Author: Hadley Wickham [aut, cre],
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between tidyverse versions 1.3.0 dated 2019-11-21 and 1.3.1 dated 2021-04-15
DESCRIPTION | 44 +-- LICENSE | 597 ----------------------------------------------- MD5 | 26 +- NEWS.md | 17 - README.md | 89 +++---- build/vignette.rds |binary inst/doc/manifesto.Rmd | 2 inst/doc/manifesto.html | 206 +--------------- inst/doc/paper.Rmd | 2 inst/doc/paper.html | 398 +++++++++---------------------- man/tidyverse-package.Rd | 12 vignettes/manifesto.Rmd | 2 vignettes/paper.Rmd | 2 vignettes/paper.bib | 2 14 files changed, 249 insertions(+), 1150 deletions(-)
Title: Joint Latent Class Trees for Joint Modeling of Time-to-Event and
Longitudinal Data
Description: Implements the tree-based approach to joint modeling of time-to-event and longitudinal data. This approach looks for a tree-based partitioning such that within each estimated latent class defined by a terminal node, the time-to-event and longitudinal responses display a lack of association. See Zhang and Simonoff (2018) <arXiv:1812.01774>.
Author: Ningshan Zhang and Jeffrey S. Simonoff
Maintainer: Ningshan Zhang <nzhang@stern.nyu.edu>
Diff between jlctree versions 0.0.1 dated 2018-12-27 and 0.0.2 dated 2021-04-15
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/get_lrt.R | 6 ++++++ R/jlctree.R | 8 ++++++++ R/jlctree.control.R | 3 ++- R/surve.R | 10 ++++++++-- 6 files changed, 33 insertions(+), 12 deletions(-)
Title: Default Color Maps from 'matplotlib'
Description: Color maps designed to improve graph readability for readers with
common forms of color blindness and/or color vision deficiency. The color
maps are also perceptually-uniform, both in regular form and also when
converted to black-and-white for printing. This package also contains
'ggplot2' bindings for discrete and continuous color and fill scales. A lean
version of the package called 'viridisLite' that does not include the
'ggplot2' bindings can be found at
<https://cran.r-project.org/package=viridisLite>.
Author: Simon Garnier [aut, cre],
Noam Ross [ctb, cph],
Bob Rudis [ctb, cph],
Marco Sciaini [ctb, cph],
Antônio Pedro Camargo [ctb, cph],
Cédric Scherer [ctb, cph]
Maintainer: Simon Garnier <garnier@njit.edu>
Diff between viridis versions 0.5.1 dated 2018-03-29 and 0.6.0 dated 2021-04-15
viridis-0.5.1/viridis/R/compatibility.R |only viridis-0.5.1/viridis/man/figures/sample-palette.png |only viridis-0.5.1/viridis/man/figures/samplepalette.pdf |only viridis-0.5.1/viridis/man/viridis.map.Rd |only viridis-0.5.1/viridis/tests/testthat/Rplots.pdf |only viridis-0.6.0/viridis/DESCRIPTION | 33 + viridis-0.6.0/viridis/MD5 | 49 +- viridis-0.6.0/viridis/NAMESPACE | 7 viridis-0.6.0/viridis/NEWS.md |only viridis-0.6.0/viridis/R/scales.R | 222 +++++++------ viridis-0.6.0/viridis/build/vignette.rds |binary viridis-0.6.0/viridis/inst/CITATION |only viridis-0.6.0/viridis/inst/doc/intro-to-viridis.R | 33 + viridis-0.6.0/viridis/inst/doc/intro-to-viridis.Rmd | 107 ++++-- viridis-0.6.0/viridis/inst/doc/intro-to-viridis.html | 320 +++++++++++-------- viridis-0.6.0/viridis/man/figures/logo.png |only viridis-0.6.0/viridis/man/figures/maps.png |only viridis-0.6.0/viridis/man/figures/viridis-scales.png |binary viridis-0.6.0/viridis/man/reexports.Rd | 10 viridis-0.6.0/viridis/man/scale_viridis.Rd | 145 +++++--- viridis-0.6.0/viridis/man/viridis_pal.Rd | 58 +-- viridis-0.6.0/viridis/tests/figs/colorandfill/a.svg | 92 ++--- viridis-0.6.0/viridis/tests/figs/colorandfill/b.svg | 92 ++--- viridis-0.6.0/viridis/tests/figs/colorandfill/c.svg | 92 ++--- viridis-0.6.0/viridis/tests/figs/colorandfill/d.svg | 92 ++--- viridis-0.6.0/viridis/tests/figs/colorandfill/e.svg |only viridis-0.6.0/viridis/tests/figs/colorandfill/f.svg |only viridis-0.6.0/viridis/tests/figs/colorandfill/g.svg |only viridis-0.6.0/viridis/tests/figs/colorandfill/h.svg |only viridis-0.6.0/viridis/tests/figs/deps.txt | 6 viridis-0.6.0/viridis/tests/testthat/test-viridis.R | 21 - viridis-0.6.0/viridis/vignettes/intro-to-viridis.Rmd | 107 ++++-- 32 files changed, 875 insertions(+), 611 deletions(-)
Title: Simulation-Based Power Analysis for Factorial Designs
Description: Functions to perform simulations of ANOVA designs of up to three factors. Calculates the observed power and average observed effect size for all main effects and interactions in the ANOVA, and all simple comparisons between conditions. Includes functions for analytic power calculations and additional helper functions that compute effect sizes for ANOVA designs, observed error rates in the simulations, and functions to plot power curves. Please see Lakens, D., & Caldwell, A. R. (2021). "Simulation-Based Power Analysis for Factorial Analysis of Variance Designs". <doi:10.1177/2515245920951503>.
Author: Aaron Caldwell [aut, cre],
Daniel Lakens [aut],
Lisa DeBruine [ctb],
Jonathon Love [ctb],
Frederik Aust [ctb] (<https://orcid.org/0000-0003-4900-788X>)
Maintainer: Aaron Caldwell <arcaldwell49@gmail.com>
Diff between Superpower versions 0.1.0 dated 2020-09-03 and 0.1.1 dated 2021-04-15
DESCRIPTION | 11 LICENSE | 4 MD5 | 88 +-- NAMESPACE | 7 NEWS.md | 20 R/ANOVA_compromise.R | 9 R/ANOVA_exact.R | 2 R/ANOVA_power.R | 4 R/Superpower_options.R | 2 R/emmeans_power.R | 6 R/globals.R | 2 R/methods.opt_alpha.R |only R/methods.sim_result.R | 107 ++++ R/minimize_balance_alpha.R | 13 R/misc_functions.R |only R/morey_plots.R |only R/plot_power.R | 2 R/power_ftest.R | 6 README.md | 2 build/vignette.rds |binary inst/CITATION | 28 - inst/doc/compromise_power.R | 17 inst/doc/compromise_power.Rmd | 17 inst/doc/compromise_power.html | 181 ++++--- inst/doc/emmeans_power.Rmd | 2 inst/doc/emmeans_power.html | 31 + inst/doc/intro_to_superpower.R | 383 +-------------- inst/doc/intro_to_superpower.Rmd | 554 +--------------------- inst/doc/intro_to_superpower.html | 810 ++++++++------------------------- inst/doc/more_anova_designs.R |only inst/doc/more_anova_designs.Rmd |only inst/doc/more_anova_designs.html |only man/ANOVA_compromise.Rd | 2 man/ANOVA_exact.Rd | 2 man/Superpower_options.Rd | 2 man/emmeans_power.Rd | 8 man/morey_plot.Rd |only man/opt_alpha-methods.Rd |only man/optimal_alpha.Rd | 93 +-- man/plot_power.Rd | 2 man/power.ftest.Rd | 6 man/sim_result-methods.Rd | 69 +- tests/testthat/test-ANOVA_compromise.R | 4 tests/testthat/test-anova_exact.R | 3 tests/testthat/test-anova_power.R | 17 tests/testthat/test-morey.R |only vignettes/compromise_power.Rmd | 17 vignettes/emmeans_power.Rmd | 2 vignettes/intro_to_superpower.Rmd | 554 +--------------------- vignettes/more_anova_designs.Rmd |only 50 files changed, 807 insertions(+), 2282 deletions(-)
Title: Geometrical Functionality of the 'spatstat' Family
Description: Defines types of spatial data such as point patterns,
mainly in two dimensions, but also in higher dimensions.
Provides class support, and functions for geometrical operations
on spatial data, used in the 'spatstat' family of packages.
Excludes spatial data on a linear network, which are covered by
the separate package 'spatstat.linnet'.
Author: Adrian Baddeley [aut, cre],
Rolf Turner [aut],
Ege Rubak [aut],
Tilman Davies [ctb],
Ute Hahn [ctb],
Abdollah Jalilian [ctb],
Sebastian Meyer [ctb],
Suman Rakshit [ctb],
Dominic Schuhmacher [ctb],
Rasmus Waagepetersen [ctb]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.geom versions 2.0-1 dated 2021-03-22 and 2.1-0 dated 2021-04-15
DESCRIPTION | 31 ++++------- MD5 | 30 +++++------ NEWS | 45 +++++++++++++++++ R/images.R | 66 ++++++++++++++++--------- R/nncross.R | 43 ++++++++++------ R/summary.im.R | 80 ++++++++++++++++-------------- R/window.R | 41 +++++++++++---- inst/doc/packagesizes.txt | 1 man/Extract.im.Rd | 121 +++++++++++++++++++++++++--------------------- man/discretise.Rd | 38 ++++++++------ src/knn3DdistX.h | 10 ++- src/knnXdist.h | 10 ++- src/nn3DdistX.h | 10 ++- src/nndistX.h | 15 +++-- tests/testsGtoJ.R | 2 tests/testsNtoO.R | 25 +++++++++ 16 files changed, 360 insertions(+), 208 deletions(-)
Title: Parallel Programming Tools for 'Rcpp'
Description: High level functions for parallel programming with 'Rcpp'.
For example, the 'parallelFor()' function can be used to convert the work of
a standard serial "for" loop into a parallel one and the 'parallelReduce()'
function can be used for accumulating aggregate or other values.
Author: JJ Allaire [aut],
Romain Francois [aut, cph],
Kevin Ushey [aut, cre],
Gregory Vandenbrouck [aut],
Marcus Geelnard [aut, cph] (TinyThread library,
https://tinythreadpp.bitsnbites.eu/),
Hamada S. Badr [ctb] (<https://orcid.org/0000-0002-9808-2344>),
RStudio [cph],
Intel [aut, cph] (Intel TBB library,
https://www.threadingbuildingblocks.org/),
Microsoft [cph]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between RcppParallel versions 5.1.1 dated 2021-04-11 and 5.1.2 dated 2021-04-15
RcppParallel-5.1.1/RcppParallel/inst/NEWS |only RcppParallel-5.1.1/RcppParallel/inst/include/RcppParallel/tbb |only RcppParallel-5.1.1/RcppParallel/inst/include/serial |only RcppParallel-5.1.1/RcppParallel/inst/include/tbb |only RcppParallel-5.1.2/RcppParallel/DESCRIPTION | 6 RcppParallel-5.1.2/RcppParallel/MD5 | 167 ------- RcppParallel-5.1.2/RcppParallel/NAMESPACE | 1 RcppParallel-5.1.2/RcppParallel/NEWS.md |only RcppParallel-5.1.2/RcppParallel/R/RcppParallel-package.R | 3 RcppParallel-5.1.2/RcppParallel/R/flags.R | 126 ----- RcppParallel-5.1.2/RcppParallel/R/hooks.R | 79 +-- RcppParallel-5.1.2/RcppParallel/R/plugin.R |only RcppParallel-5.1.2/RcppParallel/R/tbb.R |only RcppParallel-5.1.2/RcppParallel/R/utils.R |only RcppParallel-5.1.2/RcppParallel/man/RcppParallel-package.Rd | 2 RcppParallel-5.1.2/RcppParallel/man/flags.Rd | 17 RcppParallel-5.1.2/RcppParallel/man/tbbLibraryPath.Rd |only RcppParallel-5.1.2/RcppParallel/src/Makevars.in | 230 +++++----- RcppParallel-5.1.2/RcppParallel/src/install.libs.R |only RcppParallel-5.1.2/RcppParallel/tools/config/configure.R | 21 20 files changed, 226 insertions(+), 426 deletions(-)
More information about measurementProtocol at CRAN
Permanent link
Title: Bias-Corrected GEE for Cluster Randomized Trials
Description: Population-averaged models have been increasingly used in the design and analysis of
cluster randomized trials (CRTs). To facilitate the applications of population-averaged
models in CRTs, the package implements the generalized estimating equations (GEE) and
matrix-adjusted estimating equations (MAEE) approaches to jointly estimate the marginal
mean models correlation models both for general CRTs and stepped wedge CRTs. Despite the
general GEE/MAEE approach, the package also implements a fast cluster-period GEE method by
Li et al. (2021) <doi:10.1093/biostatistics/kxaa056>
specifically for stepped wedge CRTs with large and variable cluster-period sizes and gives
a simple and efficient estimating equations approach based on the cluster-period means to
estimate the intervention effects as well as correlation parameters. In addition, the package
also provides functions for generating correlated binary data with specific mean vector and
correlation matrix based on the multivariate probit method in Emrich and Piedmonte (1991) <doi:10.1080/00031305.1991.10475828> or
the conditional linear family method in Qaqish (2003) <doi:10.1093/biomet/90.2.455>.
Author: Hengshi Yu [aut, cre],
Fan Li [aut],
Paul Rathouz [aut],
Elizabeth L. Turner [aut],
John Preisser [aut]
Maintainer: Hengshi Yu <hengshi@umich.edu>
Diff between geeCRT versions 0.0.1 dated 2020-11-11 and 0.1.0 dated 2021-04-15
DESCRIPTION | 15 MD5 | 42 - R/binMAEE.R | 1538 +++++++++++++++++++++---------------------- R/contMAEE.R | 1556 +++++++++++++++++++++---------------------- R/cpgeeSWD.R | 108 +-- R/cpgee_ed.R | 1691 +++++++++++++++++++++++------------------------ R/cpgee_exc.R | 1700 ++++++++++++++++++++++-------------------------- R/cpgee_nex.R | 1620 ++++++++++++++++++++++----------------------- R/geemaee.R | 97 +- R/print_cpgeeSWD.R | 10 R/print_geemaee.R | 8 R/sampleSWCRTLarge.R | 2 R/sampleSWCRTSmall.R | 2 R/simbinCLF.R | 269 +++---- R/simbinPROBIT.R | 217 +++--- build |only inst |only man/cpgeeSWD.Rd | 60 - man/geemaee.Rd | 77 +- man/sampleSWCRTLarge.Rd | 2 man/sampleSWCRTSmall.Rd | 2 vignettes |only 22 files changed, 4432 insertions(+), 4584 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-31 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-31 0.2.2
2020-05-06 0.2.1
2020-03-06 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-12 1.1.0
Title: Data & Functions for Working with US ZIP Codes
Description: Make working with ZIP codes in R painless with an integrated dataset of U.S. ZIP codes and functions for working with them.
Search ZIP codes by multiple geographies, including state, county, city & across time zones. Also included are functions for relating
ZIP codes to Census data.
Author: Gavin Rozzi [aut, cre] (<https://orcid.org/0000-0002-9969-8175>)
Maintainer: Gavin Rozzi <gr@gavinrozzi.com>
Diff between zipcodeR versions 0.2.0 dated 2020-12-12 and 0.3.0 dated 2021-04-15
DESCRIPTION | 13 MD5 | 61 +- NAMESPACE | 44 +- NEWS.md | 8 R/data.r | 1 R/download_data.r | 36 - R/globals.r | 2 R/zip_helper_functions.R |only R/zip_lookups.r | 260 +++++++----- README.md | 108 ++--- build/vignette.rds |binary inst/doc/geographic.R |only inst/doc/geographic.Rmd |only inst/doc/geographic.html |only inst/doc/zipcodeR.R | 87 ++-- inst/doc/zipcodeR.Rmd | 271 ++++++------- inst/doc/zipcodeR.html | 978 ++++++++++++++++++++++------------------------- man/download_zip_data.Rd | 4 man/geocode_zip.Rd |only man/get_cd.Rd | 4 man/get_tracts.Rd | 42 +- man/is_zcta.Rd | 6 man/normalize_zip.Rd |only man/reverse_zipcode.Rd | 48 +- man/search_cd.Rd | 46 +- man/search_city.Rd | 46 +- man/search_county.Rd | 52 +- man/search_fips.Rd | 50 +- man/search_radius.Rd |only man/search_state.Rd | 43 +- man/search_tz.Rd | 42 +- man/zip_distance.Rd |only tests |only vignettes/geographic.Rmd |only vignettes/zipcodeR.Rmd | 271 ++++++------- 35 files changed, 1307 insertions(+), 1216 deletions(-)
Title: Cubic Hermite Splines and Related Root Finding Methods
Description: Supports cubic Hermite splines (Fritsch & Carlson, 1980 <doi:10.1137/0717021>), along with their derivatives/integrals. Also, supports monotonically increasing/decreasing splines, and computes their roots and minimum/maximum points.
Author: Abby Spurdle
Maintainer: Abby Spurdle <spurdle.a@gmail.com>
Diff between kubik versions 0.2.0 dated 2020-03-23 and 0.3.0 dated 2021-04-15
kubik-0.2.0/kubik/R/chs.r |only kubik-0.2.0/kubik/R/intoo_deriv.r |only kubik-0.2.0/kubik/R/methods.r |only kubik-0.2.0/kubik/man/11_cubic_hermite_splines.Rd |only kubik-0.2.0/kubik/man/12_constraints.Rd |only kubik-0.2.0/kubik/man/13_print_and_plot_methods.Rd |only kubik-0.2.0/kubik/man/14_roots.Rd |only kubik-0.2.0/kubik/man/15_solve_method.Rd |only kubik-0.2.0/kubik/man/16_slopes_and_tangents.Rd |only kubik-0.2.0/kubik/man/21_direct_chs_evaluation.Rd |only kubik-0.2.0/kubik/man/22_direct_chs_root_evaluation.Rd |only kubik-0.2.0/kubik/man/31_deprecated.Rd |only kubik-0.3.0/kubik/DESCRIPTION | 15 ++- kubik-0.3.0/kubik/MD5 | 49 ++++++------ kubik-0.3.0/kubik/NAMESPACE | 15 ++- kubik-0.3.0/kubik/R/chs0.r |only kubik-0.3.0/kubik/R/chs_cons.r |only kubik-0.3.0/kubik/R/chs_eval.r | 8 +- kubik-0.3.0/kubik/R/chs_interval_eval.r | 4 - kubik-0.3.0/kubik/R/chs_slopes.r | 66 +++++++++-------- kubik-0.3.0/kubik/R/params.r | 4 - kubik-0.3.0/kubik/R/plot_methods.r |only kubik-0.3.0/kubik/R/poly.r | 4 - kubik-0.3.0/kubik/R/roots.r | 46 +++++------ kubik-0.3.0/kubik/R/roots_eval.r | 4 - kubik-0.3.0/kubik/R/roots_eval_2.r | 4 - kubik-0.3.0/kubik/R/roots_interval_eval.r | 4 - kubik-0.3.0/kubik/man/00_bridging_functions.Rd |only kubik-0.3.0/kubik/man/10_cubic_hermite_splines.Rd |only kubik-0.3.0/kubik/man/20_runtime_function_objects.Rd |only kubik-0.3.0/kubik/man/30_print_method.Rd |only kubik-0.3.0/kubik/man/31_plot_methods.Rd |only kubik-0.3.0/kubik/man/40_constraints.Rd |only kubik-0.3.0/kubik/man/41_slopes.Rd |only kubik-0.3.0/kubik/man/50_roots.Rd |only kubik-0.3.0/kubik/man/51_solve_method.Rd |only kubik-0.3.0/kubik/man/60_direct_chs_evaluation.Rd |only kubik-0.3.0/kubik/man/61_direct_chs_root_evaluation.Rd |only kubik-0.3.0/kubik/man/95_deprecated.Rd |only 39 files changed, 121 insertions(+), 102 deletions(-)
Title: Sample Size Calculation in Hierarchical 2x2 Factorial Trials
Description: Implements the sample size methods for hierarchical 2x2 factorial trials under a series of hypothesis tests proposed in "Sample size calculation in hierarchical 2x2 factorial trials with unequal cluster sizes" (under review), and provides the table and plot generators for the sample size estimations.
Author: Zizhong Tian [aut, cre],
Denise Esserman [aut],
Guangyu Tong [aut],
Fan Li [aut]
Maintainer: Zizhong Tian <zizhong.tian@yale.edu>
Diff between H2x2Factorial versions 1.0.3 dated 2021-02-06 and 1.1.0 dated 2021-04-15
DESCRIPTION | 9 ++++----- MD5 | 6 +++--- R/helpers.R | 46 +++++++++++++++++++++------------------------- R/table.H2x2Factorial.R | 25 +++++++++++++++---------- 4 files changed, 43 insertions(+), 43 deletions(-)
Title: Connecting to Various Database Platforms
Description: An R 'DataBase Interface' ('DBI') compatible interface to various database platforms ('PostgreSQL', 'Oracle', 'Microsoft SQL Server',
'Amazon Redshift', 'Microsoft Parallel Database Warehouse', 'IBM Netezza', 'Apache Impala', 'Google BigQuery', and 'SQLite'). Also includes support for
fetching data as 'Andromeda' objects. Uses 'Java Database Connectivity' ('JDBC') to connect to databases (except SQLite).
Author: Martijn Schuemie [aut, cre],
Marc Suchard [aut],
Observational Health Data Science and Informatics [cph],
Microsoft Inc. [cph] (SQL Server JDBC driver),
PostgreSQL Global Development Group [cph] (PostgreSQL JDBC driver),
Oracle Inc. [cph] (Oracle JDBC driver),
Amazon Inc. [cph] (RedShift JDBC driver)
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between DatabaseConnector versions 4.0.0 dated 2021-03-02 and 4.0.2 dated 2021-04-15
DESCRIPTION | 10 MD5 | 40 NEWS.md | 18 R/Andromeda.R | 2 R/BulkLoad.R | 2 R/Connect.R | 20 R/CtasHack.R | 6 R/DBI.R | 16 R/DatabaseConnector.R | 4 R/Drivers.R | 18 R/InsertTable.R | 7 R/Sql.R | 4 README.md | 20 build/DatabaseConnector.pdf | 7020 +++++----- inst/doc/UsingDatabaseConnector.pdf |binary man/connect.Rd | 2 man/createConnectionDetails.Rd | 2 man/dbExistsTable-DatabaseConnectorConnection-character-method.Rd | 120 man/dbListTables-DatabaseConnectorConnection-method.Rd | 132 man/dbReadTable-DatabaseConnectorConnection-character-method.Rd | 6 man/jdbcDrivers.Rd | 76 21 files changed, 3779 insertions(+), 3746 deletions(-)
More information about DatabaseConnector at CRAN
Permanent link
Title: Compare Baseline Characteristics Between Groups
Description: Compare baseline characteristics between two or more groups. The variables being compared can be factor and numeric variables. The function will automatically judge the type and distribution of the variables, and make statistical description and bivariate analysis.
Author: Zhongheng Zhang,
Sir Run Run Shaw hospital,
Zhejiang university school of medicine
Maintainer: Zhongheng Zhang <zh_zhang1984@zju.edu.cn>
Diff between CBCgrps versions 2.8.1 dated 2020-08-26 and 2.8.2 dated 2021-04-15
CBCgrps-2.8.1/CBCgrps/README.md |only CBCgrps-2.8.2/CBCgrps/DESCRIPTION | 8 +- CBCgrps-2.8.2/CBCgrps/MD5 | 11 +-- CBCgrps-2.8.2/CBCgrps/R/multigrps.R | 37 ++++-------- CBCgrps-2.8.2/CBCgrps/R/twogrps.R | 72 ++++-------------------- CBCgrps-2.8.2/CBCgrps/man/CBCgrps2.6-package.Rd | 2 CBCgrps-2.8.2/CBCgrps/man/twogrps.Rd | 8 +- 7 files changed, 41 insertions(+), 97 deletions(-)
Title: Processing and Physical Activity Summaries of Minute Level
Activity Data
Description: Provides functions to process minute level actigraphy-measured activity counts data and extract commonly used physical activity volume and fragmentation metrics.
Author: Marta Karas [aut, cre] (<https://orcid.org/0000-0001-5889-3970>),
Jacek Urbanek [aut] (<https://orcid.org/0000-0002-1890-8899>),
Jennifer Schrack [aut] (<https://orcid.org/0000-0001-9244-9267>)
Maintainer: Marta Karas <marta.karass@gmail.com>
Diff between arctools versions 1.1.0 dated 2021-01-09 and 1.1.2 dated 2021-04-15
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- NEWS.md | 5 +++++ R/activity_stats.R | 3 ++- R/midnight_to_midnight.R | 2 +- R/summarize_PA.R | 2 ++ README.md | 9 +++------ inst/doc/arctools_intro.html | 9 ++++++++- man/activity_stats.Rd | 3 ++- man/midnight_to_midnight.Rd | 2 +- man/summarize_PA.Rd | 4 +++- 11 files changed, 40 insertions(+), 25 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-01-02 1.0.1
2018-11-14 1.0