Title: Custom 'xaringan' CSS Themes
Description: Create beautifully color-coordinated and customized
themes for your 'xaringan' slides, without writing any CSS. Complete
your slide theme with 'ggplot2' themes that match the font and colors
used in your slides. Customized styles can be created directly in
your slides' 'R Markdown' source file or in a separate external
script.
Author: Garrick Aden-Buie [aut, cre] (<https://orcid.org/0000-0002-7111-0077>)
Maintainer: Garrick Aden-Buie <garrick@adenbuie.com>
Diff between xaringanthemer versions 0.3.3 dated 2021-03-04 and 0.3.4 dated 2021-04-17
DESCRIPTION | 7 +++---- MD5 | 8 ++++---- NEWS.md | 4 ++++ tests/testthat/helper-session.R | 13 ++++++++++++- tests/testthat/test-themes.R | 3 +-- 5 files changed, 24 insertions(+), 11 deletions(-)
More information about xaringanthemer at CRAN
Permanent link
Title: Sparse Multi-Type Regularized Feature Modeling
Description: Implementation of the SMuRF algorithm of Devriendt et al. (2021) <doi:10.1016/j.insmatheco.2020.11.010> to fit generalized linear models (GLMs) with multiple types of predictors via regularized maximum likelihood.
Author: Tom Reynkens [aut, cre] (<https://orcid.org/0000-0002-5516-5107>),
Sander Devriendt [aut],
Katrien Antonio [aut]
Maintainer: Tom Reynkens <tomreynkens@hotmail.com>
Diff between smurf versions 1.1.1 dated 2021-03-27 and 1.1.2 dated 2021-04-17
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- build/vignette.rds |binary inst/NEWS.Rd | 7 +++++++ inst/doc/smurf.html | 4 ++-- 5 files changed, 18 insertions(+), 11 deletions(-)
Title: Identification and Classification of the Most Influential Nodes
Description: Contains functions for the classification and ranking of top candidate features, reconstruction of networks from
adjacency matrices and data frames, analysis of the topology of the network
and calculation of centrality measures, and identification of the most
influential nodes. Also, a function is provided for running SIRIR model, which
is the combination of leave-one-out cross validation technique and the conventional SIR model, on a network to unsupervisedly rank the true influence of vertices. Additionally, some functions have been provided for the assessment
of dependence and correlation of two network centrality measures as well as
the conditional probability of deviation from their corresponding means in opposite direction.
Fred Viole and David Nawrocki (2013, ISBN:1490523995).
Csardi G, Nepusz T (2006). "The igraph software package for complex network research." InterJournal, Complex Systems, 1695.
Adopted algorithms and sources are referenced in function document.
Author: Adrian (Abbas) Salavaty [aut, cre], Mirana Ramialison [ths], Peter D. Currie [ths]
Maintainer: Adrian Salavaty <abbas.salavaty@gmail.com>
Diff between influential versions 2.0.1 dated 2020-11-20 and 2.2.0 dated 2021-04-17
DESCRIPTION | 12 MD5 | 43 +- NAMESPACE | 2 NEWS.md | 38 ++ R/functions.R | 430 ++++++++++++++++++++++++++--- README.md | 13 inst/ShinyApps |only inst/doc/Vignettes.R | 45 ++- inst/doc/Vignettes.Rmd | 200 ++++++++++--- inst/doc/Vignettes.html | 647 +++++++++++++++++++++++++++++++++++---------- man/cent_network.vis.Rd | 3 man/comp_manipulate.Rd |only man/diff_data.assembly.Rd | 3 man/exir.Rd | 7 man/exir.vis.Rd | 6 man/hubness.score.Rd | 1 man/influential-package.Rd | 7 man/ivi.Rd | 4 man/ivi.from.indices.Rd | 4 man/runShinyApp.Rd |only man/spreading.score.Rd | 1 vignettes/Vignettes.Rmd | 200 ++++++++++--- 22 files changed, 1347 insertions(+), 319 deletions(-)
Title: Interface to 'fastai'
Description: The 'fastai' <https://docs.fast.ai/index.html> library
simplifies training fast and accurate neural networks
using modern best practices. It is based on research
in to deep learning best practices undertaken
at 'fast.ai', including 'out of the box' support
for vision, text, tabular, audio, time series, and
collaborative filtering models.
Author: Turgut Abdullayev [ctb, cre, cph, aut]
Maintainer: Turgut Abdullayev <turqut.a.314@gmail.com>
Diff between fastai versions 2.0.6 dated 2021-03-27 and 2.0.7 dated 2021-04-17
fastai-2.0.6/fastai/tests/testthat/test-experimental.R |only fastai-2.0.7/fastai/DESCRIPTION | 6 - fastai-2.0.7/fastai/MD5 | 16 +-- fastai-2.0.7/fastai/NEWS.md | 5 + fastai-2.0.7/fastai/R/test.R | 14 +-- fastai-2.0.7/fastai/inst/python/fastaibuilt/bs_finder.py | 70 ++++++--------- fastai-2.0.7/fastai/man/plot_confusion_matrix.Rd | 4 fastai-2.0.7/fastai/man/plot_top_losses.Rd | 9 - fastai-2.0.7/fastai/man/show_batch.Rd | 4 fastai-2.0.7/fastai/tests/testthat/test-collab.R |only 10 files changed, 62 insertions(+), 66 deletions(-)
Title: Bayesian Age-Depth Modelling of Cores Dated by Pb-210
Description: An approach to age-depth modelling that uses Bayesian statistics to reconstruct accumulation histories for 210Pb-dated deposits using prior information. It can combine 210Pb, radiocarbon, and other dates in the chronologies. See Aquino et al. (2018) <doi:10.1007/s13253-018-0328-7>. Note that parts of the code underlying 'rplum' are derived from the 'rbacon' package by the same authors. Subsequent versions of 'rplum' and 'rbacon' are planned to reduce duplication, with 'rplum' importing 'rbacon' instead.
Author: Maarten Blaauw [aut, cre],
J. Andres Christen [aut, ctb, cph],
Marco A. Aquino-Lopez [aut],
Judith Esquivel-Vazquez [ctb],
Oscar M. Gonzalez V. [ctb],
Ted Belding [cph],
James Theiler [cph],
Brian Gough [cph],
Charles Karney [cph]
Maintainer: Maarten Blaauw <maarten.blaauw@qub.ac.uk>
Diff between rplum versions 0.1.5.1 dated 2020-08-11 and 0.2.0 dated 2021-04-17
rplum-0.1.5.1/rplum/R/Bacon.R |only rplum-0.1.5.1/rplum/R/RcppExports.R |only rplum-0.1.5.1/rplum/R/accrate.R |only rplum-0.1.5.1/rplum/R/calc.R |only rplum-0.1.5.1/rplum/R/internal_plots.R |only rplum-0.1.5.1/rplum/R/plots.R |only rplum-0.1.5.1/rplum/R/read_write.R |only rplum-0.1.5.1/rplum/inst/extdata/Cores/HP1C/HP1C_30.bacon |only rplum-0.1.5.1/rplum/inst/extdata/Cores/HP1C/HP1C_30.out |only rplum-0.1.5.1/rplum/inst/extdata/Cores/HP1C/HP1C_30.plum |only rplum-0.1.5.1/rplum/inst/extdata/Cores/HP1C/HP1C_30_ages.txt |only rplum-0.1.5.1/rplum/inst/extdata/Cores/HP1C/HP1C_30_plum.out |only rplum-0.1.5.1/rplum/inst/extdata/Curves |only rplum-0.1.5.1/rplum/man/AgesOfEvents.Rd |only rplum-0.1.5.1/rplum/man/Bacon.Age.d.Rd |only rplum-0.1.5.1/rplum/man/Bacon.Rd |only rplum-0.1.5.1/rplum/man/Bacon.cleanup.Rd |only rplum-0.1.5.1/rplum/man/Bacon.hist.Rd |only rplum-0.1.5.1/rplum/man/Baconvergence.Rd |only rplum-0.1.5.1/rplum/man/accrate.age.Rd |only rplum-0.1.5.1/rplum/man/accrate.age.ghost.Rd |only rplum-0.1.5.1/rplum/man/accrate.depth.Rd |only rplum-0.1.5.1/rplum/man/accrate.depth.ghost.Rd |only rplum-0.1.5.1/rplum/man/age.pMC.Rd |only rplum-0.1.5.1/rplum/man/agemodel.it.Rd |only rplum-0.1.5.1/rplum/man/bacon2clam.Rd |only rplum-0.1.5.1/rplum/man/clam2bacon.Rd |only rplum-0.1.5.1/rplum/man/copyCalibrationCurve.Rd |only rplum-0.1.5.1/rplum/man/flux.age.ghost.Rd |only rplum-0.1.5.1/rplum/man/mix.curves.Rd |only rplum-0.1.5.1/rplum/man/pMC.age.Rd |only rplum-0.1.5.1/rplum/man/proxy.ghost.Rd |only rplum-0.1.5.1/rplum/man/scissors.Rd |only rplum-0.1.5.1/rplum/man/scissors.plum.Rd |only rplum-0.1.5.1/rplum/man/thinner.Rd |only rplum-0.1.5.1/rplum/src |only rplum-0.2.0/rplum/DESCRIPTION | 12 rplum-0.2.0/rplum/MD5 | 105 - rplum-0.2.0/rplum/NAMESPACE | 28 rplum-0.2.0/rplum/NEWS.md | 6 rplum-0.2.0/rplum/R/MCMC.R | 207 +-- rplum-0.2.0/rplum/R/Plum.R | 174 +- rplum-0.2.0/rplum/R/agedepth.R | 223 +-- rplum-0.2.0/rplum/R/calibrate.R | 458 ++---- rplum-0.2.0/rplum/R/calibrate_plum.R | 363 ----- rplum-0.2.0/rplum/R/import.R |only rplum-0.2.0/rplum/R/read_write_plum.R | 745 ++++++----- rplum-0.2.0/rplum/inst/extdata/Cores/HP1C/HP1C_51.bacon |only rplum-0.2.0/rplum/inst/extdata/Cores/HP1C/HP1C_51.out |only rplum-0.2.0/rplum/inst/extdata/Cores/HP1C/HP1C_51.plum |only rplum-0.2.0/rplum/inst/extdata/Cores/HP1C/HP1C_51_ages.txt |only rplum-0.2.0/rplum/inst/extdata/Cores/HP1C/HP1C_51_plum.out |only rplum-0.2.0/rplum/inst/extdata/Cores/HP1C/HP1C_settings.txt |only rplum-0.2.0/rplum/man/A.modelled.Rd | 17 rplum-0.2.0/rplum/man/Plum.Rd | 45 rplum-0.2.0/rplum/man/Plum.cleanup.Rd | 3 rplum-0.2.0/rplum/man/Plum_runs.Rd | 5 rplum-0.2.0/rplum/man/add.dates.Rd | 50 rplum-0.2.0/rplum/man/agedepth.Rd | 81 - rplum-0.2.0/rplum/man/background.Rd |only rplum-0.2.0/rplum/man/calib.plot.Rd | 21 rplum-0.2.0/rplum/man/calib.plumbacon.plot.Rd | 62 rplum-0.2.0/rplum/man/draw.pbmeasured.Rd | 11 rplum-0.2.0/rplum/man/draw.pbmodelled.Rd | 41 rplum-0.2.0/rplum/man/plum.scissors.Rd |only rplum-0.2.0/rplum/man/plum.thinner.Rd |only 66 files changed, 1127 insertions(+), 1530 deletions(-)
Title: MCMC, Particle Filtering, and Programmable Hierarchical Modeling
Description: A system for writing hierarchical statistical models largely
compatible with 'BUGS' and 'JAGS', writing nimbleFunctions to operate models
and do basic R-style math, and compiling both models and nimbleFunctions via
custom-generated C++. 'NIMBLE' includes default methods for MCMC, Monte Carlo
Expectation Maximization, and some other tools. The nimbleFunction system makes
it easy to do things like implement new MCMC samplers from R, customize the
assignment of samplers to different parts of a model from R, and compile the
new samplers automatically via C++ alongside the samplers 'NIMBLE' provides.
'NIMBLE' extends the 'BUGS'/'JAGS' language by making it extensible: New
distributions and functions can be added, including as calls to external
compiled code. Although most people think of MCMC as the main goal of the
'BUGS'/'JAGS' language for writing models, one can use 'NIMBLE' for writing
arbitrary other kinds of model-generic algorithms as well. A full User Manual is
available at <https://r-nimble.org>.
Author: Perry de Valpine [aut],
Christopher Paciorek [aut, cre],
Daniel Turek [aut],
Nick Michaud [aut],
Cliff Anderson-Bergman [aut],
Fritz Obermeyer [aut],
Claudia Wehrhahn Cortes [aut] (Bayesian nonparametrics system),
Abel Rodrìguez [aut] (Bayesian nonparametrics system),
Duncan Temple Lang [aut] (packaging configuration),
Sally Paganin [aut] (reversible jump MCMC),
Jagadish Babu [ctb] (code for the compilation system for an early
version of NIMBLE),
Lauren Ponisio [ctb] (contributions to the cross-validation code),
Peter Sujan [ctb] (multivariate t distribution code)
Maintainer: Christopher Paciorek <paciorek@stat.berkeley.edu>
Diff between nimble versions 0.10.1 dated 2020-11-23 and 0.11.0 dated 2021-04-17
nimble-0.10.1/nimble/inst/tests |only nimble-0.10.1/nimble/man/ModifiedRmmParseKeywords2.Rd |only nimble-0.11.0/nimble/DESCRIPTION | 8 nimble-0.11.0/nimble/INSTALL | 6 nimble-0.11.0/nimble/LICENSE | 2 nimble-0.11.0/nimble/MD5 | 525 +++--- nimble-0.11.0/nimble/NAMESPACE | 3 nimble-0.11.0/nimble/R/BNP_samplers.R | 70 nimble-0.11.0/nimble/R/BUGS_BUGSdecl.R | 8 nimble-0.11.0/nimble/R/BUGS_getDependencies.R | 22 nimble-0.11.0/nimble/R/BUGS_graphNodeMaps.R | 7 nimble-0.11.0/nimble/R/BUGS_model.R | 477 ++++- nimble-0.11.0/nimble/R/BUGS_modelDef.R | 169 -- nimble-0.11.0/nimble/R/BUGS_nimbleGraph.R | 26 nimble-0.11.0/nimble/R/BUGS_readBUGS.R | 19 nimble-0.11.0/nimble/R/BUGS_testBUGS.R | 232 +- nimble-0.11.0/nimble/R/BUGS_utils.R | 4 nimble-0.11.0/nimble/R/CAR.R | 3 nimble-0.11.0/nimble/R/MCEM_build.R | 53 nimble-0.11.0/nimble/R/MCMC_configuration.R | 62 nimble-0.11.0/nimble/R/MCMC_conjugacy.R | 497 +++-- nimble-0.11.0/nimble/R/MCMC_samplers.R | 165 + nimble-0.11.0/nimble/R/MCMC_utils.R | 78 nimble-0.11.0/nimble/R/NF_utils.R | 20 nimble-0.11.0/nimble/R/RCfunction_compile.R | 3 nimble-0.11.0/nimble/R/RCfunction_core.R | 63 nimble-0.11.0/nimble/R/all_utils.R | 6 nimble-0.11.0/nimble/R/config.R | 2 nimble-0.11.0/nimble/R/cppDefs_core.R | 4 nimble-0.11.0/nimble/R/cppDefs_cppProject.R | 8 nimble-0.11.0/nimble/R/cppDefs_nimbleFunction.R | 1 nimble-0.11.0/nimble/R/cppDefs_outputCppFromRparseTree.R | 1 nimble-0.11.0/nimble/R/cppInterfaces_modelValues.R | 4 nimble-0.11.0/nimble/R/cppInterfaces_nimbleFunctions.R | 51 nimble-0.11.0/nimble/R/crossValidation.R | 2 nimble-0.11.0/nimble/R/distributions_processInputList.R | 8 nimble-0.11.0/nimble/R/genCpp_exprClass.R | 3 nimble-0.11.0/nimble/R/genCpp_sizeProcessing.R | 65 nimble-0.11.0/nimble/R/initializeModel.R | 56 nimble-0.11.0/nimble/R/makevars.R | 1 nimble-0.11.0/nimble/R/miscFunctions.R | 27 nimble-0.11.0/nimble/R/nimbleFunction_Rexecution.R | 30 nimble-0.11.0/nimble/R/nimbleFunction_keywordProcessing.R | 17 nimble-0.11.0/nimble/R/nimbleProject.R | 30 nimble-0.11.0/nimble/R/options.R | 43 nimble-0.11.0/nimble/R/types_modelValues.R | 2 nimble-0.11.0/nimble/R/types_nodeFxnVector.R | 3 nimble-0.11.0/nimble/R/types_symbolTable.R | 34 nimble-0.11.0/nimble/R/types_util.R | 71 nimble-0.11.0/nimble/inst/COPYRIGHTS | 4 nimble-0.11.0/nimble/inst/CppCode/dllFinalizer.cpp | 5 nimble-0.11.0/nimble/inst/CppCode/nimDists.cpp | 23 nimble-0.11.0/nimble/inst/CppCode/nimbleGraph.cpp | 359 ++++ nimble-0.11.0/nimble/inst/NEWS | 240 ++ nimble-0.11.0/nimble/inst/include/Eigen/Cholesky | 5 nimble-0.11.0/nimble/inst/include/Eigen/Core | 62 nimble-0.11.0/nimble/inst/include/Eigen/Eigenvalues | 4 nimble-0.11.0/nimble/inst/include/Eigen/Geometry | 1 nimble-0.11.0/nimble/inst/include/Eigen/KLUSupport |only nimble-0.11.0/nimble/inst/include/Eigen/LU | 4 nimble-0.11.0/nimble/inst/include/Eigen/PaStiXSupport | 1 nimble-0.11.0/nimble/inst/include/Eigen/QR | 4 nimble-0.11.0/nimble/inst/include/Eigen/QtAlignedMalloc | 2 nimble-0.11.0/nimble/inst/include/Eigen/SVD | 4 nimble-0.11.0/nimble/inst/include/Eigen/src/Cholesky/LDLT.h | 5 nimble-0.11.0/nimble/inst/include/Eigen/src/Cholesky/LLT.h | 27 nimble-0.11.0/nimble/inst/include/Eigen/src/CholmodSupport/CholmodSupport.h | 71 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/ArithmeticSequence.h |only nimble-0.11.0/nimble/inst/include/Eigen/src/Core/ArrayBase.h | 2 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/Assign.h | 2 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/AssignEvaluator.h | 6 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/BooleanRedux.h | 44 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/CommaInitializer.h | 4 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/CoreEvaluators.h | 203 +- nimble-0.11.0/nimble/inst/include/Eigen/src/Core/CoreIterators.h | 5 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/CwiseBinaryOp.h | 5 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/CwiseNullaryOp.h | 40 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/DenseBase.h | 4 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/Diagonal.h | 10 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/DiagonalMatrix.h | 4 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/DiagonalProduct.h | 2 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/Dot.h | 16 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/Fuzzy.h | 6 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/GeneralProduct.h | 34 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/GenericPacketMath.h | 9 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/GlobalFunctions.h | 50 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/IndexedView.h |only nimble-0.11.0/nimble/inst/include/Eigen/src/Core/Map.h | 15 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/MathFunctions.h | 342 +++- nimble-0.11.0/nimble/inst/include/Eigen/src/Core/MathFunctionsImpl.h | 7 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/MatrixBase.h | 17 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/NestByValue.h | 10 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/NoAlias.h | 3 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/NumTraits.h | 36 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/PlainObjectBase.h | 4 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/ProductEvaluators.h | 4 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/Random.h | 2 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/Redux.h | 14 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/Ref.h | 2 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/Replicate.h | 4 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/ReturnByValue.h | 2 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/Reverse.h | 6 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/SelfAdjointView.h | 4 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/SolveTriangular.h | 2 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/StableNorm.h | 2 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/Transpose.h | 10 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/TriangularMatrix.h | 15 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/VectorwiseOp.h | 4 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/arch/AVX/Complex.h | 36 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/arch/AVX/PacketMath.h | 24 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/arch/AVX512/PacketMath.h | 204 +- nimble-0.11.0/nimble/inst/include/Eigen/src/Core/arch/AltiVec/Complex.h | 35 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/arch/AltiVec/MathFunctions.h | 6 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/arch/AltiVec/PacketMath.h | 6 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/arch/CUDA/Complex.h | 6 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/arch/CUDA/Half.h | 147 + nimble-0.11.0/nimble/inst/include/Eigen/src/Core/arch/CUDA/MathFunctions.h | 14 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/arch/CUDA/PacketMath.h | 14 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/arch/CUDA/PacketMathHalf.h | 46 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/arch/CUDA/TypeCasting.h | 8 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/arch/Default/ConjHelper.h |only nimble-0.11.0/nimble/inst/include/Eigen/src/Core/arch/NEON/Complex.h | 4 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/arch/NEON/MathFunctions.h | 92 + nimble-0.11.0/nimble/inst/include/Eigen/src/Core/arch/NEON/PacketMath.h | 2 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/arch/SSE/Complex.h | 36 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/arch/SSE/PacketMath.h | 66 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/arch/ZVector/Complex.h | 407 +++- nimble-0.11.0/nimble/inst/include/Eigen/src/Core/arch/ZVector/MathFunctions.h | 105 + nimble-0.11.0/nimble/inst/include/Eigen/src/Core/arch/ZVector/PacketMath.h | 844 ++++++---- nimble-0.11.0/nimble/inst/include/Eigen/src/Core/functors/AssignmentFunctors.h | 2 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/functors/UnaryFunctors.h | 44 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/products/GeneralMatrixMatrix.h | 12 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h | 6 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h | 8 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h | 19 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/products/GeneralMatrixVector.h | 716 ++------ nimble-0.11.0/nimble/inst/include/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h | 19 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h | 48 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h | 9 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/products/SelfadjointProduct.h | 2 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/products/SelfadjointRank2Update.h | 2 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/products/TriangularMatrixMatrix.h | 11 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h | 39 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h | 46 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h | 40 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/util/BlasUtil.h | 5 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/util/Constants.h | 4 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/util/DisableStupidWarnings.h | 6 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/util/ForwardDeclarations.h | 1 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/util/IndexedViewHelper.h |only nimble-0.11.0/nimble/inst/include/Eigen/src/Core/util/IntegralConstant.h |only nimble-0.11.0/nimble/inst/include/Eigen/src/Core/util/MKL_support.h | 19 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/util/Macros.h | 69 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/util/Memory.h | 38 nimble-0.11.0/nimble/inst/include/Eigen/src/Core/util/Meta.h | 112 - nimble-0.11.0/nimble/inst/include/Eigen/src/Core/util/StaticAssert.h | 116 - nimble-0.11.0/nimble/inst/include/Eigen/src/Core/util/SymbolicIndex.h |only nimble-0.11.0/nimble/inst/include/Eigen/src/Core/util/XprHelper.h | 16 nimble-0.11.0/nimble/inst/include/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h | 4 nimble-0.11.0/nimble/inst/include/Eigen/src/Geometry/AlignedBox.h | 2 nimble-0.11.0/nimble/inst/include/Eigen/src/Geometry/AngleAxis.h | 2 nimble-0.11.0/nimble/inst/include/Eigen/src/Geometry/ParametrizedLine.h | 39 nimble-0.11.0/nimble/inst/include/Eigen/src/Geometry/Quaternion.h | 29 nimble-0.11.0/nimble/inst/include/Eigen/src/Geometry/Transform.h | 14 nimble-0.11.0/nimble/inst/include/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h | 2 nimble-0.11.0/nimble/inst/include/Eigen/src/Jacobi/Jacobi.h | 261 +-- nimble-0.11.0/nimble/inst/include/Eigen/src/KLUSupport |only nimble-0.11.0/nimble/inst/include/Eigen/src/LU/FullPivLU.h | 2 nimble-0.11.0/nimble/inst/include/Eigen/src/PaStiXSupport/PaStiXSupport.h | 8 nimble-0.11.0/nimble/inst/include/Eigen/src/PardisoSupport/PardisoSupport.h | 6 nimble-0.11.0/nimble/inst/include/Eigen/src/QR/ColPivHouseholderQR.h | 1 nimble-0.11.0/nimble/inst/include/Eigen/src/QR/CompleteOrthogonalDecomposition.h | 2 nimble-0.11.0/nimble/inst/include/Eigen/src/QR/FullPivHouseholderQR.h | 9 nimble-0.11.0/nimble/inst/include/Eigen/src/QR/HouseholderQR.h | 9 nimble-0.11.0/nimble/inst/include/Eigen/src/SVD/BDCSVD.h | 166 + nimble-0.11.0/nimble/inst/include/Eigen/src/SVD/SVDBase.h | 1 nimble-0.11.0/nimble/inst/include/Eigen/src/SparseCore/AmbiVector.h | 2 nimble-0.11.0/nimble/inst/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h | 67 nimble-0.11.0/nimble/inst/include/Eigen/src/SparseCore/SparseAssign.h | 4 nimble-0.11.0/nimble/inst/include/Eigen/src/SparseCore/SparseCompressedBase.h | 16 nimble-0.11.0/nimble/inst/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h | 12 nimble-0.11.0/nimble/inst/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h | 22 nimble-0.11.0/nimble/inst/include/Eigen/src/SparseQR/SparseQR.h | 2 nimble-0.11.0/nimble/inst/include/Eigen/src/UmfPackSupport/UmfPackSupport.h | 6 nimble-0.11.0/nimble/inst/include/Eigen/src/misc/blas.h | 6 nimble-0.11.0/nimble/inst/include/Eigen/src/misc/lapacke.h | 9 nimble-0.11.0/nimble/inst/include/Eigen/src/plugins/ArrayCwiseUnaryOps.h | 17 nimble-0.11.0/nimble/inst/include/Eigen/src/plugins/BlockMethods.h | 576 +++++- nimble-0.11.0/nimble/inst/include/Eigen/src/plugins/IndexedViewMethods.h |only nimble-0.11.0/nimble/inst/include/nimble/RcppUtils.h | 2 nimble-0.11.0/nimble/inst/include/nimble/nimbleEigenNimArr.h | 9 nimble-0.11.0/nimble/inst/include/nimble/nimbleGraph.h | 27 nimble-0.11.0/nimble/man/extractControlElement.Rd | 6 nimble-0.11.0/nimble/man/getBound.Rd | 4 nimble-0.11.0/nimble/man/getConditionallyIndependentSets.Rd |only nimble-0.11.0/nimble/man/getParam.Rd | 6 nimble-0.11.0/nimble/man/getSamplesDPmeasure.Rd | 5 nimble-0.11.0/nimble/man/modelBaseClass-class.Rd | 99 - nimble-0.11.0/nimble/man/modelInitialization.Rd | 8 nimble-0.11.0/nimble/man/nimCopy.Rd | 10 nimble-0.11.0/nimble/man/nimble-internal.Rd | 49 nimble-0.11.0/nimble/man/nodeFunctions.Rd | 2 nimble-0.11.0/nimble/man/samplers.Rd | 26 nimble-0.11.0/nimble/man/simNodes.Rd | 4 nimble-0.11.0/nimble/man/testBUGSmodel.Rd | 8 nimble-0.11.0/nimble/src/nimble.cpp | 2 nimble-0.11.0/nimble/tests |only 207 files changed, 6115 insertions(+), 3722 deletions(-)
Title: Text Mining GUI Interface
Description: Graphic interface for text analysis, implement a few methods such as biplots, correspondence analysis, co-occurrence, clustering, topic models, correlations and sentiments.
Author: Conrado Reyes [aut, cre],
Purificacion Galindo [tch]
Maintainer: Conrado Reyes <coreyes@gmail.com>
Diff between TextMiningGUI versions 0.2 dated 2020-12-07 and 0.3 dated 2021-04-17
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/TextMiningGUI.R | 17 ++++++++++------- R/console.R | 23 ++++++++++++----------- 4 files changed, 29 insertions(+), 25 deletions(-)
Title: Measuring Disparity
Description: A modular package for measuring disparity (multidimensional space occupancy). Disparity can be calculated from any matrix defining a multidimensional space. The package provides a set of implemented metrics to measure properties of the space and allows users to provide and test their own metrics (Guillerme (2018) <doi:10.1111/2041-210X.13022>). The package also provides functions for looking at disparity in a serial way (e.g. disparity through time - Guillerme and Cooper (2018) <doi:10.1111/pala.12364>) or per groups as well as visualising the results. Finally, this package provides several statistical tests for disparity analysis.
Author: Thomas Guillerme [aut, cre, cph],
Mark N Puttick [aut, cph]
Maintainer: Thomas Guillerme <guillert@tcd.ie>
Diff between dispRity versions 1.5.0 dated 2020-09-25 and 1.6.0 dated 2021-04-17
dispRity-1.5.0/dispRity/man/get.ancestors.Rd |only dispRity-1.5.0/dispRity/man/nodes.coordinates.Rd |only dispRity-1.6.0/dispRity/DESCRIPTION | 10 dispRity-1.6.0/dispRity/MD5 | 134 +- dispRity-1.6.0/dispRity/NAMESPACE | 16 dispRity-1.6.0/dispRity/NEWS.md | 46 dispRity-1.6.0/dispRity/R/Claddis.ordination.R | 2 dispRity-1.6.0/dispRity/R/boot.matrix.R | 23 dispRity-1.6.0/dispRity/R/char.diff.R | 2 dispRity-1.6.0/dispRity/R/chrono.subsets.R | 26 dispRity-1.6.0/dispRity/R/chrono.subsets_fun.R | 8 dispRity-1.6.0/dispRity/R/clean.data.R | 49 dispRity-1.6.0/dispRity/R/clean.data_fun.R | 19 dispRity-1.6.0/dispRity/R/custom.subsets.R | 26 dispRity-1.6.0/dispRity/R/dispRity-package.R | 70 - dispRity-1.6.0/dispRity/R/dispRity.R | 73 - dispRity-1.6.0/dispRity/R/dispRity.metric.R | 564 ++++++---- dispRity-1.6.0/dispRity/R/dispRity.utilities.R | 145 ++ dispRity-1.6.0/dispRity/R/dispRity_fun.R | 179 ++- dispRity-1.6.0/dispRity/R/dtt.dispRity.R | 10 dispRity-1.6.0/dispRity/R/make.demo.data.R | 4 dispRity-1.6.0/dispRity/R/make.metric.R | 67 - dispRity-1.6.0/dispRity/R/model.test_fun.R | 2 dispRity-1.6.0/dispRity/R/multi.ace.R | 47 dispRity-1.6.0/dispRity/R/multi.ace_fun.R | 41 dispRity-1.6.0/dispRity/R/null.test.R | 8 dispRity-1.6.0/dispRity/R/null.test_fun.R | 16 dispRity-1.6.0/dispRity/R/plot.dispRity.R | 19 dispRity-1.6.0/dispRity/R/plot.dispRity_fun.R | 247 +++- dispRity-1.6.0/dispRity/R/print.dispRity.R | 21 dispRity-1.6.0/dispRity/R/randtest.dispRity.R |only dispRity-1.6.0/dispRity/R/randtest.dispRity_fun.R |only dispRity-1.6.0/dispRity/R/reduce.space.R | 16 dispRity-1.6.0/dispRity/R/reduce.space_fun.R | 10 dispRity-1.6.0/dispRity/R/sanitizing.R | 64 - dispRity-1.6.0/dispRity/R/summary.dispRity.R | 15 dispRity-1.6.0/dispRity/R/summary.dispRity_fun.R | 10 dispRity-1.6.0/dispRity/R/test.dispRity.R | 7 dispRity-1.6.0/dispRity/R/test.metric.R | 49 dispRity-1.6.0/dispRity/R/test.metric_fun.R | 2 dispRity-1.6.0/dispRity/R/tree.age_fun.R | 6 dispRity-1.6.0/dispRity/R/zzz.R | 2 dispRity-1.6.0/dispRity/data/BeckLee_ages.rda |binary dispRity-1.6.0/dispRity/data/BeckLee_disparity.rda |binary dispRity-1.6.0/dispRity/data/BeckLee_mat50.rda |binary dispRity-1.6.0/dispRity/data/BeckLee_mat99.rda |binary dispRity-1.6.0/dispRity/data/BeckLee_tree.rda |binary dispRity-1.6.0/dispRity/data/datalist |only dispRity-1.6.0/dispRity/data/demo_data.rda |only dispRity-1.6.0/dispRity/data/disparity.rda |binary dispRity-1.6.0/dispRity/inst/References.bib | 20 dispRity-1.6.0/dispRity/inst/vignettes/dispRity_workhop_code.Rmd | 87 + dispRity-1.6.0/dispRity/man/BeckLee.Rd | 2 dispRity-1.6.0/dispRity/man/add.tree.Rd |only dispRity-1.6.0/dispRity/man/boot.matrix.Rd | 2 dispRity-1.6.0/dispRity/man/chrono.subsets.Rd | 22 dispRity-1.6.0/dispRity/man/clean.data.Rd | 7 dispRity-1.6.0/dispRity/man/custom.subsets.Rd | 12 dispRity-1.6.0/dispRity/man/demo_data.Rd |only dispRity-1.6.0/dispRity/man/dispRity.Rd | 7 dispRity-1.6.0/dispRity/man/dispRity.metric.Rd | 97 + dispRity-1.6.0/dispRity/man/dtt.dispRity.Rd | 2 dispRity-1.6.0/dispRity/man/fill.dispRity.Rd | 8 dispRity-1.6.0/dispRity/man/make.dispRity.Rd | 4 dispRity-1.6.0/dispRity/man/make.metric.Rd | 11 dispRity-1.6.0/dispRity/man/multi.ace.Rd | 17 dispRity-1.6.0/dispRity/man/n.subsets.Rd |only dispRity-1.6.0/dispRity/man/null.test.Rd | 2 dispRity-1.6.0/dispRity/man/plot.dispRity.Rd | 17 dispRity-1.6.0/dispRity/man/randtest.dispRity.Rd |only dispRity-1.6.0/dispRity/man/reduce.space.Rd | 4 dispRity-1.6.0/dispRity/man/test.dispRity.Rd | 2 dispRity-1.6.0/dispRity/man/test.metric.Rd | 30 73 files changed, 1750 insertions(+), 658 deletions(-)
Title: The R Code Optimizer
Description: Automatically apply different strategies to optimize R code.
'rco' functions take R code as input, and returns R code as output.
Author: Juan Cruz Rodriguez [aut, cre],
Yihui Xie [ctb] (<https://orcid.org/0000-0003-0645-5666>),
Nicolás Wolovick [ctb]
Maintainer: Juan Cruz Rodriguez <jcrodriguez@unc.edu.ar>
Diff between rco versions 1.0.1 dated 2020-02-08 and 1.0.2 dated 2021-04-17
DESCRIPTION | 14 +++++------ MD5 | 30 +++++++++++------------ NEWS.md | 4 +++ R/rco-gui.R | 4 +-- README.md | 42 ++++++++++++++------------------- build/vignette.rds |binary inst/doc/opt-common-subexpr.html | 4 +-- inst/doc/opt-constant-folding.html | 4 +-- inst/doc/opt-constant-propagation.html | 6 ++-- inst/doc/opt-dead-code.html | 6 ++-- inst/doc/opt-dead-expr.html | 6 ++-- inst/doc/opt-dead-store.html | 6 ++-- inst/doc/opt-loop-invariant.html | 6 ++-- man/all_optimizers.Rd | 4 ++- man/max_optimizers.Rd | 4 ++- man/rco_gui.Rd | 4 +-- 16 files changed, 73 insertions(+), 71 deletions(-)
Title: Cleaning Geometries from Spatial Objects
Description: Provides a set of utility tools to inspect spatial objects, facilitate
handling and reporting of topology errors and geometry validity issues.
Finally, it provides a geometry cleaner that will fix all geometry problems,
and eliminate (at least reduce) the likelihood of having issues when doing
spatial data processing.
Author: Emmanuel Blondel [aut, cre] (<https://orcid.org/0000-0002-5870-5762>)
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between cleangeo versions 0.2-3 dated 2019-12-04 and 0.2-4 dated 2021-04-17
DESCRIPTION | 12 ++++++------ MD5 | 18 +++++++++--------- R/cleangeo.R | 4 ++-- README.md | 2 +- inst/doc/quickstart.R | 14 +++++++------- inst/doc/quickstart.Rmd | 2 +- inst/doc/quickstart.html | 15 ++++++++++++--- man/cleangeo.Rd | 5 ++--- man/clgeo_Clean.Rd | 3 +-- vignettes/quickstart.Rmd | 2 +- 10 files changed, 42 insertions(+), 35 deletions(-)
Title: Nonlinear Mixed Effects Models in Population PK/PD
Description: Fit and compare nonlinear mixed-effects models in differential
equations with flexible dosing information commonly seen in pharmacokinetics
and pharmacodynamics (Almquist, Leander, and Jirstrand 2015
<doi:10.1007/s10928-015-9409-1>). Differential equation solving is
by compiled C code provided in the 'RxODE' package
(Wang, Hallow, and James 2015 <doi:10.1002/psp4.12052>).
Author: Matthew Fidler [aut] (<https://orcid.org/0000-0001-8538-6691>),
Yuan Xiong [aut],
Rik Schoemaker [aut] (<https://orcid.org/0000-0002-7538-3005>),
Justin Wilkins [aut] (<https://orcid.org/0000-0002-7099-9396>),
Wenping Wang [aut, cre],
Robert Leary [ctb],
Mason McComb [aut] (<https://orcid.org/0000-0001-9871-8616>),
Mirjam Trame [ctb],
Teun Post [ctb],
Richard Hooijmaijers [aut],
Hadley Wickham [ctb],
Dirk Eddelbuettel [cph],
Johannes Pfeifer [ctb],
Robert B. Schnabel [ctb],
Elizabeth Eskow [ctb],
Emmanuelle Comets [ctb],
Audrey Lavenu [ctb],
Marc Lavielle [ctb],
David Ardia [cph],
Daniel C. Dillon [ctb],
Katharine Mullen [cph],
Ben Goodrich [ctb]
Maintainer: Wenping Wang <wwang8198@gmail.com>
Diff between nlmixr versions 2.0.3 dated 2021-04-09 and 2.0.4 dated 2021-04-17
nlmixr-2.0.3/nlmixr/tests/testthat/test-saem-theo_sd.rds |only nlmixr-2.0.4/nlmixr/DESCRIPTION | 11 +-- nlmixr-2.0.4/nlmixr/MD5 | 25 ++++--- nlmixr-2.0.4/nlmixr/NEWS.md | 21 +++++- nlmixr-2.0.4/nlmixr/R/foceiFit.R | 13 +++- nlmixr-2.0.4/nlmixr/R/nlmixr.R | 32 +++++++++- nlmixr-2.0.4/nlmixr/R/ui.R | 48 ++++++++++----- nlmixr-2.0.4/nlmixr/inst/tools/workaround.R | 13 ++++ nlmixr-2.0.4/nlmixr/src/neldermead.cpp | 10 +-- nlmixr-2.0.4/nlmixr/src/saem.cpp | 33 +++++----- nlmixr-2.0.4/nlmixr/tests/testthat/test-307.R | 3 nlmixr-2.0.4/nlmixr/tests/testthat/test-issue-501.R |only nlmixr-2.0.4/nlmixr/tests/testthat/test-issue-502.R |only nlmixr-2.0.4/nlmixr/tests/testthat/test-issue-503.R |only nlmixr-2.0.4/nlmixr/tests/testthat/test-saem-theo_sd.R | 5 + nlmixr-2.0.4/nlmixr/tests/testthat/test-saem-theo_sd.qs |only 16 files changed, 155 insertions(+), 59 deletions(-)
Title: Partially Separable Quasi-Newton
Description: Provides quasi-Newton methods to minimize partially separable
functions. The methods are largely described by
Nocedal and Wright (2006) <doi:10.1007/978-0-387-40065-5>.
Author: Benjamin Christoffersen [cre, aut]
(<https://orcid.org/0000-0002-7182-1346>)
Maintainer: Benjamin Christoffersen <boennecd@gmail.com>
Diff between psqn versions 0.1.4 dated 2020-11-26 and 0.2.0 dated 2021-04-17
DESCRIPTION | 17 MD5 | 52 NAMESPACE | 1 NEWS |only R/RcppExports.R | 151 + R/psqn-package.R | 8 inst/doc/psqn.html | 2692 ++++++++++++++++----------- inst/doc/quick-intro.html | 380 ++- inst/generic_example.cpp |only inst/include/lp.h | 117 - inst/include/psqn-Rcpp-wrapper.h |only inst/include/psqn-bfgs.h | 26 inst/include/psqn-misc.h | 37 inst/include/psqn-reporter.h | 19 inst/include/psqn.h | 1952 ++++++++++++++----- inst/mlogit-ex.cpp | 49 inst/poly-ex.cpp | 21 man/psqn-package.Rd | 11 man/psqn.Rd | 31 man/psqn_generic.Rd |only src/RcppExports.cpp | 31 src/r-api.cpp | 367 +++ src/test-lp.cpp | 29 tests/testthat/GLM-generic-data.RDS |only tests/testthat/mlogit-ex-hess-res.RDS |only tests/testthat/psqn_generic-glm-hess-res.RDS |only tests/testthat/psqn_generic-glm-res.RDS |only tests/testthat/psqn_generic-glmm-res.RDS |only tests/testthat/test-R-api.R | 8 tests/testthat/test-cpp-api.R | 17 tests/testthat/test-poly-ex.R | 148 - tests/testthat/test-psqn-generic.R |only 32 files changed, 4292 insertions(+), 1872 deletions(-)
Title: Fast Extraction from Raster Datasets using Polygons
Description: Provides a replacement for the 'extract' function from the 'raster' package
that is suitable for extracting raster values using 'sf' polygons.
Author: Daniel Baston [aut, cre],
ISciences, LLC [cph]
Maintainer: Daniel Baston <dbaston@isciences.com>
Diff between exactextractr versions 0.5.1 dated 2020-11-20 and 0.6.0 dated 2021-04-17
DESCRIPTION | 12 MD5 | 75 + NEWS.md | 11 R/RcppExports.R | 12 R/coverage_fraction.R | 1 R/exact_extract.R | 727 +++++++++------ R/exact_extract_helpers.R |only R/package.R | 1 README.md | 236 +++-- build |only configure | 20 configure.ac | 2 inst |only man/dot-resultColNames.Rd |only man/dot-valueWeightIndexes.Rd |only man/exact_extract.Rd | 371 +++++--- man/exactextractr.Rd | 1 src/Makevars.in | 3 src/Makevars.win | 3 src/RcppExports.cpp | 45 src/coverage_fraction.cpp |only src/exact_extract.cpp | 544 ++++------- src/exactextract/CMakeLists.txt | 3 src/exactextract/README.md | 4 src/exactextract/src/raster.h | 51 + src/exactextract/src/raster_area.h |only src/exactextract/src/raster_cell_intersection.cpp | 6 src/exactextract/test/test_raster_area.cpp |only src/exactextract/test/test_raster_cell_intersection.cpp | 31 src/exactextract/test/test_raster_iterator.cpp |only src/geos_r.h |only src/numeric_vector_raster.h |only src/raster_utils.cpp |only src/raster_utils.h |only src/resample.cpp |only src/s4_raster_source.h |only tests/testthat/test_exact_extract.R | 736 +++++++++------- tests/testthat/test_exact_extract_errors.R |only tests/testthat/test_exact_extract_include_args.R |only tests/testthat/test_exact_resample.R | 16 vignettes |only 41 files changed, 1770 insertions(+), 1141 deletions(-)
Title: Dyadic Mixed Model for Pedigree Data
Description: Dyadic mixed model analysis with multi-trait responses and
pedigree-based partitioning of individual variation into a range of
environmental and genetic variance components for individual and
maternal effects. Method documented in dmmOverview.pdf; it is an
implementation of dispersion mean model described by
Searle et al. (1992) "Variance Components", Wiley, NY.
Author: Neville Jackson
Maintainer: Neville Jackson <nanddjackson@bigpond.com>
Diff between dmm versions 2.1-6 dated 2020-06-03 and 2.1-7 dated 2021-04-17
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- inst/doc/dmmOverview.pdf |binary inst/doc/mods.txt | 3 +++ man/quercus.df.Rd | 2 +- 5 files changed, 12 insertions(+), 9 deletions(-)
Title: The Complete R6 Probability Distributions Interface
Description: An R6 object oriented distributions package. Unified interface for 42 probability distributions and 11 kernels including functionality for multiple scientific types. Additionally functionality for composite distributions and numerical imputation. Design patterns including wrappers and decorators are described in Gamma et al. (1994, ISBN:0-201-63361-2). For quick reference of probability distributions including d/p/q/r functions and results we refer to McLaughlin, M. P. (2001). Additionally Devroye (1986, ISBN:0-387-96305-7) for sampling the Dirichlet distribution, Gentle (2009) <doi:10.1007/978-0-387-98144-4> for sampling the Multivariate Normal distribution and Michael et al. (1976) <doi:10.2307/2683801> for sampling the Wald distribution.
Author: Raphael Sonabend [aut, cre] (<https://orcid.org/0000-0001-9225-4654>),
Franz Kiraly [aut],
Peter Ruckdeschel [ctb] (Author of distr),
Matthias Kohl [ctb] (Author of distr),
Nurul Ain Toha [ctb],
Shen Chen [ctb],
Jordan Deenichin [ctb],
Chengyang Gao [ctb],
Chloe Zhaoyuan Gu [ctb],
Yunjie He [ctb],
Xiaowen Huang [ctb],
Shuhan Liu [ctb],
Runlong Yu [ctb],
Chijing Zeng [ctb],
Qian Zhou [ctb]
Maintainer: Raphael Sonabend <raphaelsonabend@gmail.com>
Diff between distr6 versions 1.5.0 dated 2021-02-16 and 1.5.2 dated 2021-04-17
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++------ NEWS.md | 8 ++++++++ R/Wrapper_VectorDistribution.R | 8 ++++++-- README.md | 2 +- man/VectorDistribution.Rd | 2 ++ tests/testthat/test_wrapper_vector.R | 6 +++--- 7 files changed, 32 insertions(+), 18 deletions(-)
Title: Google Analytics API into R
Description: Interact with the Google Analytics
APIs <https://developers.google.com/analytics/>, including
the Core Reporting API (v3 and v4), Management API, User Activity API
GA4's Data API and Admin API and Multi-Channel Funnel API.
Author: Mark Edmondson [aut, cre] (<https://orcid.org/0000-0002-8434-3881>),
Artem Klevtsov [ctb],
Johann deBoer [ctb],
David Watkins [ctb],
Olivia Brode-Roger [ctb],
Jas Sohi [ctb],
Zoran Selinger [ctb],
Octavian Corlade [ctb]
Maintainer: Mark Edmondson <m@sunholo.com>
Diff between googleAnalyticsR versions 0.8.0 dated 2020-06-24 and 1.0.0 dated 2021-04-17
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More information about googleAnalyticsR at CRAN
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Title: "Finding Groups in Data": Cluster Analysis Extended Rousseeuw et
al.
Description: Methods for Cluster analysis. Much extended the original from
Peter Rousseeuw, Anja Struyf and Mia Hubert,
based on Kaufman and Rousseeuw (1990) "Finding Groups in Data".
Author: Martin Maechler [aut, cre] (<https://orcid.org/0000-0002-8685-9910>),
Peter Rousseeuw [aut] (Fortran original,
<https://orcid.org/0000-0002-3807-5353>),
Anja Struyf [aut] (S original),
Mia Hubert [aut] (S original, <https://orcid.org/0000-0001-6398-4850>),
Kurt Hornik [trl, ctb] (port to R; maintenance(1999-2000),
<https://orcid.org/0000-0003-4198-9911>),
Matthias Studer [ctb],
Pierre Roudier [ctb],
Juan Gonzalez [ctb],
Kamil Kozlowski [ctb],
Erich Schubert [ctb] (fastpam options for pam(),
<https://orcid.org/0000-0001-9143-4880>),
Keefe Murphy [ctb] (volume.ellipsoid({d >= 3}))
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between cluster versions 2.1.1 dated 2021-02-14 and 2.1.2 dated 2021-04-17
DESCRIPTION | 8 ++--- MD5 | 34 ++++++++++++--------- build/partial.rdb |binary inst/NEWS.Rd | 11 ++++++- inst/po/de/LC_MESSAGES/R-cluster.mo |binary inst/po/fr/LC_MESSAGES/R-cluster.mo |binary inst/po/fr/LC_MESSAGES/cluster.mo |binary inst/po/it/LC_MESSAGES/R-cluster.mo |binary inst/po/lt |only po/R-de.po | 2 - po/R-fr.po | 56 ++++++++++++++++++------------------ po/R-it.po | 17 +++++----- po/R-lt.po |only po/fr.po | 4 +- po/lt.po |only po/update-me.sh | 4 +- src/init.c | 18 +++++------ tests/agnes-ex.R | 2 + tests/agnes-ex.Rout.save | 2 + 19 files changed, 88 insertions(+), 70 deletions(-)
Title: Models for Survival Analysis
Description: Implementations of classical and machine learning models for survival analysis, including deep neural networks via 'keras' and 'tensorflow'. Each model includes a separated fit and predict interface with consistent prediction types for predicting risk, survival probabilities, or survival distributions with 'distr6' <https://CRAN.R-project.org/package=distr6>. Models are either implemented from 'Python' via 'reticulate' <https://CRAN.R-project.org/package=reticulate>, from code in GitHub packages, or novel implementations using 'Rcpp' <https://CRAN.R-project.org/package=Rcpp>. Novel machine learning survival models wil be included in the package in near-future updates. Neural networks are implemented from the 'Python' package 'pycox' <https://github.com/havakv/pycox> and are detailed by Kvamme et al. (2019) <https://jmlr.org/papers/v20/18-424.html>. The 'Akritas' estimator is defined in Akritas (1994) <doi:10.1214/aos/1176325630>. 'DNNSurv' is defined in Zhao and Feng (2020) <arXiv:1908.02337>.
Author: Raphael Sonabend [aut, cre] (<https://orcid.org/0000-0001-9225-4654>)
Maintainer: Raphael Sonabend <raphaelsonabend@gmail.com>
Diff between survivalmodels versions 0.1.7 dated 2021-03-09 and 0.1.8 dated 2021-04-17
DESCRIPTION | 10 +++++----- MD5 | 24 ++++++++++++------------ NEWS.md | 5 +++++ R/dnnsurv.R | 18 ++++++++++++++++++ R/helpers_keras.R | 4 ++-- R/helpers_pycox.R | 8 ++++---- README.md | 4 ++-- build/partial.rdb |binary man/dnnsurv.Rd | 18 ++++++++++++++++++ man/install_keras.Rd | 4 ++-- man/install_pycox.Rd | 4 ++-- man/install_torch.Rd | 4 ++-- man/survivalmodels-package.Rd | 2 +- 13 files changed, 73 insertions(+), 32 deletions(-)
More information about survivalmodels at CRAN
Permanent link
Title: Diverse Cluster Ensemble in R
Description: Performs cluster analysis using an ensemble
clustering framework, Chiu & Talhouk (2018)
<doi:10.1186/s12859-017-1996-y>. Results from a diverse set of
algorithms are pooled together using methods such as majority voting,
K-Modes, LinkCluE, and CSPA. There are options to compare cluster
assignments across algorithms using internal and external indices,
visualizations such as heatmaps, and significance testing for the
existence of clusters.
Author: Derek Chiu [aut, cre],
Aline Talhouk [aut],
Johnson Liu [ctb, com]
Maintainer: Derek Chiu <dchiu@bccrc.ca>
Diff between diceR versions 1.0.2 dated 2021-03-18 and 1.0.3 dated 2021-04-17
DESCRIPTION | 12 ++++++------ MD5 | 23 ++++++++++++----------- NEWS.md | 6 ++++++ R/algorithms.R | 17 +---------------- R/consensus_cluster.R | 4 +--- README.md | 28 ++++++++++++++-------------- inst/doc/overview.Rmd | 2 -- inst/doc/overview.html | 2 -- man/consensus_cluster.Rd | 3 +-- man/dice.Rd | 2 +- man/diceR-package.Rd | 2 ++ man/figures/logo.png |only vignettes/overview.Rmd | 2 -- 13 files changed, 44 insertions(+), 59 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-16 0.3.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-07-26 0.2.1
2017-09-25 0.2
2016-02-12 0.1-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-01 0.0.1
Title: Administrative Boundaries of Spain
Description: Administrative Boundaries of Spain at several levels (CCAA,
Provinces, Municipalities) based on the GISCO Eurostat database
<https://ec.europa.eu/eurostat/web/gisco> and 'CartoBase SIANE'
from 'Instituto Geografico Nacional' <https://www.ign.es/>.
It also provides a 'leaflet' plugin and the ability of
downloading and processing static tiles.
Author: Diego Hernangómez [aut, cre, cph]
(<https://orcid.org/0000-0001-8457-4658>),
EuroGeographics [cph] (for the administrative boundaries.),
Instituto Geográfico Nacional [cph] (for the administrative
boundaries.)
Maintainer: Diego Hernangómez <diego.hernangomezherrero@gmail.com>
Diff between mapSpain versions 0.2.1 dated 2021-03-19 and 0.2.2 dated 2021-04-17
DESCRIPTION | 9 - MD5 | 124 ++++++++++-------- NEWS.md | 18 +- R/addProviderEspTiles.R | 6 R/data.R | 52 +------ R/esp_dict.R | 2 R/esp_getTiles.R | 31 +++- R/esp_get_can_box.R | 58 +++++--- R/esp_get_capimun.R | 29 ++-- R/esp_get_ccaa.R | 58 ++++++-- R/esp_get_country.R | 6 R/esp_get_gridmap.R | 68 ---------- R/esp_get_hydrobasin.R | 41 +----- R/esp_get_hypsobath.R | 71 ++++------ R/esp_get_munic.R | 22 +-- R/esp_get_nuts.R | 13 + R/esp_get_prov.R | 18 ++ R/esp_get_railway.R | 33 +---- R/esp_get_roads.R | 19 +- R/mapSpain-package.R | 13 + README.md | 203 ++++++++++++++++++------------- build |only inst/doc |only inst/examples |only inst/schemaorg.json | 2 inst/tinytest/test_addProviderEspTiles.R | 38 ++--- inst/tinytest/test_esp_dict.R | 11 + inst/tinytest/test_esp_getTiles.R | 20 +-- inst/tinytest/test_esp_get_can_box.R | 3 inst/tinytest/test_esp_get_capimun.R | 2 inst/tinytest/test_esp_get_ccaa.R | 2 inst/tinytest/test_esp_get_country.R | 2 inst/tinytest/test_esp_get_gridmap.R | 2 inst/tinytest/test_esp_get_hydrobasin.R | 9 - inst/tinytest/test_esp_get_hypsobath.R | 15 +- inst/tinytest/test_esp_get_munic.R | 1 inst/tinytest/test_esp_get_nuts.R | 8 - inst/tinytest/test_esp_get_prov.R | 2 inst/tinytest/test_esp_get_railway.R | 2 inst/tinytest/test_esp_get_rivers.R | 12 - inst/tinytest/test_esp_get_roads.R | 2 man/addProviderEspTiles.Rd | 4 man/esp_codelist.Rd | 9 - man/esp_getTiles.Rd | 39 ++++- man/esp_get_can_box.Rd | 58 +++++--- man/esp_get_capimun.Rd | 35 +++-- man/esp_get_ccaa.Rd | 72 ++++++++-- man/esp_get_country.Rd | 48 ++++++- man/esp_get_gridmap.Rd | 102 ++++++--------- man/esp_get_hydrobasin.Rd | 47 ++----- man/esp_get_hypsobath.Rd | 77 +++++------ man/esp_get_munic.Rd | 28 ++-- man/esp_get_nuts.Rd | 14 +- man/esp_get_prov.Rd | 32 ++++ man/esp_get_railway.Rd | 39 ++--- man/esp_get_rivers.Rd | 6 man/esp_get_roads.Rd | 25 ++- man/esp_munic.sf.Rd | 21 +-- man/esp_nuts.sf.Rd | 32 +++- man/leaflet.providersESP.df.Rd | 3 man/mapSpain-package.Rd | 12 + vignettes |only 62 files changed, 927 insertions(+), 803 deletions(-)
Title: Generate Music Easily and Show Them Anywhere
Description: Provides a simple and intuitive high-level language, with which
you can create music easily. Takes care of all the dirty technical
details in converting your music to musical scores and audio files.
Works in 'R Markdown' documents <https://rmarkdown.rstudio.com/>,
R 'Jupyter Notebooks' <https://jupyter.org/>, and 'RStudio'
<https://www.rstudio.com/>, so you can embed generated music
anywhere. Internally, uses 'MusicXML' <https://www.musicxml.com/> to
represent musical scores, and 'MuseScore' <https://musescore.org/> to
convert 'MusicXML'.
Author: Renfei Mao
Maintainer: Renfei Mao <renfeimao@gmail.com>
Diff between gm versions 1.0.0 dated 2021-03-23 and 1.0.2 dated 2021-04-17
DESCRIPTION | 21 - MD5 | 45 +- NAMESPACE | 2 NEWS.md |only R/condition.R | 9 R/duration.R | 3 R/gm.R | 14 R/line.R | 2 R/pitch.R | 210 +++++++----- R/show.R | 45 +- README.md | 13 build/vignette.rds |binary inst/doc/cn.R |only inst/doc/cn.Rmd |only inst/doc/cn.html |only inst/doc/gm.R | 23 - inst/doc/gm.Rmd | 217 ++++++++++--- inst/doc/gm.html | 706 +++++++++++++++++++++++-------------------- man/Line.Rd | 2 man/figures/cn |only man/figures/readme_audio.png |only man/gm-internal.Rd | 2 man/gm.Rd | 12 vignettes/cn.Rmd |only vignettes/gm.Rmd | 217 ++++++++++--- 25 files changed, 961 insertions(+), 582 deletions(-)
Title: Calibration Functions for Analytical Chemistry
Description: Simple functions for plotting linear
calibration functions and estimating standard errors for measurements
according to the Handbook of Chemometrics and Qualimetrics: Part A
by Massart et al. (1997) There are also functions estimating the limit
of detection (LOD) and limit of quantification (LOQ).
The functions work on model objects from - optionally weighted - linear
regression (lm) or robust linear regression ('rlm' from the 'MASS' package).
Author: Johannes Ranke [aut, cre, cph]
(<https://orcid.org/0000-0003-4371-6538>)
Maintainer: Johannes Ranke <jranke@uni-bremen.de>
Diff between chemCal versions 0.2.1 dated 2018-07-17 and 0.2.2 dated 2021-04-17
chemCal-0.2.1/chemCal/man/chemCal-package.Rd |only chemCal-0.2.2/chemCal/DESCRIPTION | 18 chemCal-0.2.2/chemCal/MD5 | 27 chemCal-0.2.2/chemCal/NEWS.md | 17 chemCal-0.2.2/chemCal/R/calplot.R | 14 chemCal-0.2.2/chemCal/README.md | 6 chemCal-0.2.2/chemCal/build/vignette.rds |binary chemCal-0.2.2/chemCal/data/din32645.rda |binary chemCal-0.2.2/chemCal/data/rl95_cadmium.rda |only chemCal-0.2.2/chemCal/inst/doc/chemCal.R | 8 chemCal-0.2.2/chemCal/inst/doc/chemCal.html | 1616 +++++++++++++++++++++++-- chemCal-0.2.2/chemCal/man/calplot.lm.Rd | 7 chemCal-0.2.2/chemCal/man/rl95_cadmium.Rd |only chemCal-0.2.2/chemCal/man/rl95_toluene.Rd | 8 chemCal-0.2.2/chemCal/man/utstats14.Rd | 5 chemCal-0.2.2/chemCal/vignettes/references.bib | 10 16 files changed, 1583 insertions(+), 153 deletions(-)
Title: SciViews - Standard Dialog Boxes for Windows, MacOS and Linuxes
Description: Quickly construct standard dialog boxes for your GUI, including
message boxes, input boxes, list, file or directory selection, ... In case R
cannot display GUI dialog boxes, a simpler command line version of these
interactive elements is also provided as fallback solution.
Author: Philippe Grosjean [aut, cre] (<https://orcid.org/0000-0002-2694-9471>),
Paul Hibbins [ctb]
Maintainer: Philippe Grosjean <phgrosjean@sciviews.org>
Diff between svDialogs versions 1.0.0 dated 2018-04-26 and 1.0.3 dated 2021-04-17
svDialogs-1.0.0/svDialogs/TODO |only svDialogs-1.0.3/svDialogs/DESCRIPTION | 33 - svDialogs-1.0.3/svDialogs/MD5 | 60 +- svDialogs-1.0.3/svDialogs/NEWS.md |only svDialogs-1.0.3/svDialogs/R/dlg_dir.R | 7 svDialogs-1.0.3/svDialogs/R/dlg_input.R | 10 svDialogs-1.0.3/svDialogs/R/dlg_list.R | 26 - svDialogs-1.0.3/svDialogs/R/dlg_message.R | 9 svDialogs-1.0.3/svDialogs/R/dlg_open.R | 64 +-- svDialogs-1.0.3/svDialogs/R/dlg_save.R | 8 svDialogs-1.0.3/svDialogs/R/get_system.R |only svDialogs-1.0.3/svDialogs/R/menu.R | 7 svDialogs-1.0.3/svDialogs/R/svDialogs-internal.R | 4 svDialogs-1.0.3/svDialogs/R/svDialogs-package.R | 19 svDialogs-1.0.3/svDialogs/build/vignette.rds |binary svDialogs-1.0.3/svDialogs/inst/CITATION | 6 svDialogs-1.0.3/svDialogs/inst/WORDLIST |only svDialogs-1.0.3/svDialogs/inst/doc/Standard_dialog_boxes_for_everybody.R | 2 svDialogs-1.0.3/svDialogs/inst/doc/Standard_dialog_boxes_for_everybody.Rmd | 17 svDialogs-1.0.3/svDialogs/inst/doc/Standard_dialog_boxes_for_everybody.html | 210 +++++++++- svDialogs-1.0.3/svDialogs/inst/gui/RCtxMenuLinux.txt | 6 svDialogs-1.0.3/svDialogs/inst/gui/RMenuLinux.txt | 66 +-- svDialogs-1.0.3/svDialogs/man/dlg_dir.Rd | 17 svDialogs-1.0.3/svDialogs/man/dlg_form.Rd | 93 +++- svDialogs-1.0.3/svDialogs/man/dlg_input.Rd | 32 - svDialogs-1.0.3/svDialogs/man/dlg_list.Rd | 83 ++- svDialogs-1.0.3/svDialogs/man/dlg_message.Rd | 64 ++- svDialogs-1.0.3/svDialogs/man/dlg_open.Rd | 84 ++-- svDialogs-1.0.3/svDialogs/man/dlg_save.Rd | 29 - svDialogs-1.0.3/svDialogs/man/get_system.Rd |only svDialogs-1.0.3/svDialogs/man/menu.Rd | 10 svDialogs-1.0.3/svDialogs/man/svDialogs-package.Rd | 34 + svDialogs-1.0.3/svDialogs/tests/spelling.R |only svDialogs-1.0.3/svDialogs/vignettes/Standard_dialog_boxes_for_everybody.Rmd | 17 34 files changed, 711 insertions(+), 306 deletions(-)
Title: Forecasting Using State Space Models
Description: Functions implementing Single Source of Error state space models for purposes of time series analysis and forecasting.
The package includes ADAM (Svetunkov, 2021, <https://openforecast.org/adam/>),
Exponential Smoothing (Hyndman et al., 2008, <doi: 10.1007/978-3-540-71918-2>),
SARIMA (Svetunkov & Boylan, 2019 <doi: 10.1080/00207543.2019.1600764>),
Complex Exponential Smoothing (Svetunkov & Kourentzes, 2018, <doi: 10.13140/RG.2.2.24986.29123>),
Simple Moving Average (Svetunkov & Petropoulos, 2018 <doi: 10.1080/00207543.2017.1380326>)
and several simulation functions. It also allows dealing with intermittent demand based on the
iETS framework (Svetunkov & Boylan, 2019, <doi: 10.13140/RG.2.2.35897.06242>).
Author: Ivan Svetunkov [aut, cre] (Lecturer at Centre for Marketing Analytics
and Forecasting, Lancaster University, UK)
Maintainer: Ivan Svetunkov <ivan@svetunkov.ru>
Diff between smooth versions 3.1.0 dated 2021-02-20 and 3.1.1 dated 2021-04-17
smooth-3.1.0/smooth/tests/testthat/test_ges.R |only smooth-3.1.1/smooth/DESCRIPTION | 22 smooth-3.1.1/smooth/MD5 | 62 - smooth-3.1.1/smooth/NAMESPACE | 1 smooth-3.1.1/smooth/NEWS | 32 smooth-3.1.1/smooth/R/adam.R | 225 ++-- smooth-3.1.1/smooth/R/adamGeneral.R | 1252 +++++++++++++------------- smooth-3.1.1/smooth/R/autoadam.R | 69 - smooth-3.1.1/smooth/R/methods.R | 4 smooth-3.1.1/smooth/R/oes.R | 1 smooth-3.1.1/smooth/R/oesg.R | 1 smooth-3.1.1/smooth/R/zzz.R | 16 smooth-3.1.1/smooth/build/partial.rdb |binary smooth-3.1.1/smooth/build/vignette.rds |binary smooth-3.1.1/smooth/inst/doc/adam.R | 77 + smooth-3.1.1/smooth/inst/doc/adam.Rmd | 102 +- smooth-3.1.1/smooth/inst/doc/adam.html | 537 ++++++----- smooth-3.1.1/smooth/inst/doc/ces.html | 33 smooth-3.1.1/smooth/inst/doc/es.R | 8 smooth-3.1.1/smooth/inst/doc/es.Rmd | 12 smooth-3.1.1/smooth/inst/doc/es.html | 123 -- smooth-3.1.1/smooth/inst/doc/gum.html | 12 smooth-3.1.1/smooth/inst/doc/oes.Rmd | 6 smooth-3.1.1/smooth/inst/doc/oes.html | 126 +- smooth-3.1.1/smooth/inst/doc/simulate.html | 80 - smooth-3.1.1/smooth/inst/doc/sma.html | 6 smooth-3.1.1/smooth/inst/doc/smooth.html | 4 smooth-3.1.1/smooth/inst/doc/ssarima.html | 29 smooth-3.1.1/smooth/man/plot.smooth.Rd | 4 smooth-3.1.1/smooth/tests/testthat/test_gum.R |only smooth-3.1.1/smooth/vignettes/adam.Rmd | 102 +- smooth-3.1.1/smooth/vignettes/es.Rmd | 12 smooth-3.1.1/smooth/vignettes/oes.Rmd | 6 33 files changed, 1617 insertions(+), 1347 deletions(-)
Title: Simply Caching R Objects
Description: Provides intuitive functions for caching R objects, encouraging
reproducible, restartable, and distributed R analysis. The user selects a
location to store caches, and then provides nothing more than a cache name
and instructions (R code) for how to produce the R object. Also
provides some advanced options like environment assignments, recreating or
reloading caches, and cluster compute bindings (using the 'batchtools'
package) making it flexible enough for use in large-scale data analysis
projects.
Author: VP Nagraj [aut],
Nathan Sheffield [aut, cre]
Maintainer: Nathan Sheffield <nathan@code.databio.org>
Diff between simpleCache versions 0.4.1 dated 2019-02-26 and 0.4.2 dated 2021-04-17
DESCRIPTION | 16 - MD5 | 26 +-- NEWS.md | 4 R/utility.R | 10 - build/vignette.rds |binary inst/doc/clusterCaches.R | 10 - inst/doc/clusterCaches.html | 184 ++++++++++++++-------- inst/doc/sharingCaches.R | 4 inst/doc/sharingCaches.html | 154 ++++++++++++------ inst/doc/simpleCacheIntroduction.R | 26 +-- inst/doc/simpleCacheIntroduction.html | 278 ++++++++++++++++++++-------------- man/simpleCache-package.Rd | 4 man/simpleCache.Rd | 27 ++- man/storeCache.Rd | 8 14 files changed, 465 insertions(+), 286 deletions(-)
Title: R Interface to Global Biotic Interactions
Description: A programmatic interface to the web service methods
provided by Global Biotic Interactions (GloBI)
(<https://www.globalbioticinteractions.org/>). GloBI provides
access to spatial-temporal species interaction records from
sources all over the world. rglobi provides methods to search
species interactions by location, interaction type, and
taxonomic name. In addition, it supports Cypher, a graph query
language, to allow for executing custom queries on the GloBI
aggregate species interaction data set.
Author: Jorrit Poelen [aut, cre],
Stephen Gosnell [aut],
Sergey Slyusarev [aut]
Maintainer: Jorrit Poelen <jhpoelen@xs4all.nl>
Diff between rglobi versions 0.2.21 dated 2019-12-06 and 0.2.22 dated 2021-04-17
DESCRIPTION | 16 +++++++++------- MD5 | 14 +++++++------- NEWS | 11 +++++++++++ README.md | 2 +- build/vignette.rds |binary inst/doc/rglobi_vignette.Rmd | 29 ++++++++++++----------------- inst/doc/rglobi_vignette.html | 21 +++++---------------- vignettes/rglobi_vignette.Rmd | 29 ++++++++++++----------------- 8 files changed, 57 insertions(+), 65 deletions(-)
Title: 3D Visualization Using OpenGL
Description: Provides medium to high level functions for 3D interactive graphics, including
functions modelled on base graphics (plot3d(), etc.) as well as functions for
constructing representations of geometric objects (cube3d(), etc.). Output
may be on screen using OpenGL, or to various standard 3D file formats including
WebGL, PLY, OBJ, STL as well as 2D image formats, including PNG, Postscript, SVG, PGF.
Author: Duncan Murdoch [aut, cre],
Daniel Adler [aut],
Oleg Nenadic [ctb],
Simon Urbanek [ctb],
Ming Chen [ctb],
Albrecht Gebhardt [ctb],
Ben Bolker [ctb],
Gabor Csardi [ctb],
Adam Strzelecki [ctb],
Alexander Senger [ctb],
The R Core Team [ctb, cph],
Dirk Eddelbuettel [ctb],
The authors of Shiny [cph],
The authors of knitr [cph],
Jeroen Ooms [ctb],
Yohann Demont [ctb],
Joshua Ulrich [ctb],
Xavier Fernandez i Marin [ctb],
George Helffrich [ctb],
Ivan Krylov [ctb]
Maintainer: Duncan Murdoch <murdoch.duncan@gmail.com>
Diff between rgl versions 0.105.22 dated 2021-03-04 and 0.106.6 dated 2021-04-17
rgl-0.105.22/rgl/inst/NEWS |only rgl-0.106.6/rgl/DESCRIPTION | 58 rgl-0.106.6/rgl/MD5 | 312 ++- rgl-0.106.6/rgl/NAMESPACE | 42 rgl-0.106.6/rgl/NEWS.md |only rgl-0.106.6/rgl/R/animate.R | 2 rgl-0.106.6/rgl/R/as.mesh3d.default.R | 286 +++ rgl-0.106.6/rgl/R/clipMesh3d.R | 28 rgl-0.106.6/rgl/R/convertScene.R | 85 - rgl-0.106.6/rgl/R/drape3d.R |only rgl-0.106.6/rgl/R/extrafont.R |only rgl-0.106.6/rgl/R/filledContour3d.R | 21 rgl-0.106.6/rgl/R/fonts.R | 7 rgl-0.106.6/rgl/R/hooks.R | 6 rgl-0.106.6/rgl/R/knitr.R | 55 rgl-0.106.6/rgl/R/matrices.R | 18 rgl-0.106.6/rgl/R/merge.mesh3d.R | 5 rgl-0.106.6/rgl/R/mesh3d.R | 368 ++-- rgl-0.106.6/rgl/R/pkgdown.R |only rgl-0.106.6/rgl/R/plot3d.R | 4 rgl-0.106.6/rgl/R/r3d.rgl.R | 17 rgl-0.106.6/rgl/R/rglcontroller.R | 1 rgl-0.106.6/rgl/R/rglwidget.R | 23 rgl-0.106.6/rgl/R/shadow3d.R |only rgl-0.106.6/rgl/R/solids3d.R | 143 - rgl-0.106.6/rgl/R/thigmophobe3d.R | 3 rgl-0.106.6/rgl/R/tkpar3dsave.R | 2 rgl-0.106.6/rgl/R/tkspin3d.R | 4 rgl-0.106.6/rgl/R/webGL.R | 5 rgl-0.106.6/rgl/R/windows |only rgl-0.106.6/rgl/R/zzz.R | 40 rgl-0.106.6/rgl/README.md | 53 rgl-0.106.6/rgl/build/vignette.rds |binary rgl-0.106.6/rgl/configure | 11 rgl-0.106.6/rgl/configure.ac | 11 rgl-0.106.6/rgl/demo/bivar.r | 2 rgl-0.106.6/rgl/demo/rglExamples.R | 1 rgl-0.106.6/rgl/inst/WORDLIST | 81 rgl-0.106.6/rgl/inst/doc/WebGL.html | 70 rgl-0.106.6/rgl/inst/doc/pkgdown.R |only rgl-0.106.6/rgl/inst/doc/pkgdown.Rmd |only rgl-0.106.6/rgl/inst/doc/pkgdown.html |only rgl-0.106.6/rgl/inst/doc/rgl.Rmd | 45 rgl-0.106.6/rgl/inst/doc/rgl.html | 903 +++++------ rgl-0.106.6/rgl/inst/doc/transparency.R | 3 rgl-0.106.6/rgl/inst/doc/transparency.Rmd | 3 rgl-0.106.6/rgl/inst/doc/transparency.html | 40 rgl-0.106.6/rgl/inst/htmlwidgets/lib/rglClass/init.src.js | 100 - 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Title: Color Palettes, Colormaps, and Tools to Evaluate Them
Description: A comprehensive collection of color palettes, colormaps, and tools to evaluate them.
Author: Kevin Wright [aut, cre] (<https://orcid.org/0000-0002-0617-8673>)
Maintainer: Kevin Wright <kw.stat@gmail.com>
Diff between pals versions 1.6 dated 2019-12-04 and 1.7 dated 2021-04-17
pals-1.6/pals/inst/doc/illusion.R |only pals-1.6/pals/inst/doc/illusion.Rmd |only pals-1.6/pals/inst/doc/illusion.html |only pals-1.6/pals/vignettes/illusion.Rmd |only pals-1.7/pals/DESCRIPTION | 14 pals-1.7/pals/MD5 | 42 - pals-1.7/pals/NAMESPACE | 1 pals-1.7/pals/NEWS.md | 4 pals-1.7/pals/R/colors_continuous.R | 13 pals-1.7/pals/R/sysdata.rda |binary pals-1.7/pals/build/vignette.rds |binary pals-1.7/pals/inst/doc/bivariate_choropleths.html | 359 ++++---------- pals-1.7/pals/inst/doc/pals_examples.R | 2 pals-1.7/pals/inst/doc/pals_examples.Rmd | 8 pals-1.7/pals/inst/doc/pals_examples.html | 531 +++++++--------------- pals-1.7/pals/man/continuous.Rd | 12 pals-1.7/pals/man/discrete.Rd | 2 pals-1.7/pals/man/pal.bands.Rd | 11 pals-1.7/pals/man/pal.safe.Rd | 2 pals-1.7/pals/man/pal.sineramp.Rd | 12 pals-1.7/pals/man/pals.Rd | 1 pals-1.7/pals/man/penobscot.Rd | 4 pals-1.7/pals/vignettes/pals.bib | 2 pals-1.7/pals/vignettes/pals_examples.Rmd | 8 24 files changed, 374 insertions(+), 654 deletions(-)
Title: Put Page Numbers on Graphics
Description: A simple way to add page numbers to base/ggplot/lattice graphics.
Author: Kevin Wright [aut, cre] (<https://orcid.org/0000-0002-0617-8673>)
Maintainer: Kevin Wright <kw.stat@gmail.com>
Diff between pagenum versions 1.1 dated 2017-07-13 and 1.2 dated 2021-04-17
DESCRIPTION | 20 +- MD5 | 18 +- NEWS.md |only build/vignette.rds |binary inst/doc/pagenum_examples.R | 13 - inst/doc/pagenum_examples.Rmd | 21 -- inst/doc/pagenum_examples.html | 327 ++++++++++++++++------------------------- man/figures |only man/pagenum.Rd | 15 + tests/testthat/test_pagenum.R | 2 vignettes/pagenum_examples.Rmd | 21 -- 11 files changed, 175 insertions(+), 262 deletions(-)
Title: An R Package to Retrieve, Analyze and Visualize Air Traffic Data
Description: Provides functionalities and data structures to retrieve, analyze and visualize aviation
data. It includes a client interface to the 'OpenSky' API <https://opensky-network.org>. It allows
retrieval of flight information, as well as aircraft state vectors.
Author: Rafael Ayala, Daniel Ayala, David Ruiz, Aleix Sellés, Lara Sellés Vidal
Maintainer: Rafael Ayala <rafael.ayala@oist.jp>
Diff between openSkies versions 1.1.0 dated 2021-03-06 and 1.1.1 dated 2021-04-17
DESCRIPTION | 10 MD5 | 4 inst/doc/openSkies.html | 583 ++++++++++++++++++++++++------------------------ 3 files changed, 303 insertions(+), 294 deletions(-)
Title: Cleaner Workspaces with Shared Variable Environments
Description: Provides intuitive functions for loading objects into
environments, encouraging less cluttered workspaces and sharing variables
with large or reusable data across users and sessions. The user
provides named variables which are loaded into the variable environment for
later retrieval.
Author: Nathan Sheffield [aut, cre]
Maintainer: Nathan Sheffield <nathan@code.databio.org>
Diff between loadr versions 0.1.2 dated 2019-03-08 and 0.1.3 dated 2021-04-17
DESCRIPTION | 16 +-- MD5 | 16 +-- NEWS.md | 6 + R/loadr.R | 2 build/vignette.rds |binary inst/doc/loadrIntro.R | 30 +++--- inst/doc/loadrIntro.html | 219 +++++++++++++++++++++++++++++------------------ man/eload.Rd | 8 + man/loadr.Rd | 3 9 files changed, 181 insertions(+), 119 deletions(-)
Title: Classical Jacobi Eigenvalue Algorithm
Description: Implements the classical Jacobi algorithm for the
eigenvalues and eigenvectors of a real symmetric matrix, both in
pure 'R' and in 'C++' using 'Rcpp'. Mainly as a programming example
for teaching purposes.
Author: Bill Venables
Maintainer: Bill Venables <Bill.Venables@gmail.com>
Diff between JacobiEigen versions 0.3-3 dated 2019-03-10 and 0.3-4 dated 2021-04-17
DESCRIPTION | 10 +++--- MD5 | 18 ++++++------ NAMESPACE | 16 +++++------ R/RcppExports.R | 22 +++++++-------- build/vignette.rds |binary inst/doc/JacobiEigen.R | 8 ++--- inst/doc/JacobiEigen.pdf |binary man/Jacobi.Rd | 68 +++++++++++++++++++++++------------------------ man/JacobiR.Rd | 68 +++++++++++++++++++++++------------------------ man/JacobiS.Rd | 68 +++++++++++++++++++++++------------------------ 10 files changed, 139 insertions(+), 139 deletions(-)
Title: Toolbox for Model Building and Forecasting
Description: Implements functions and instruments for regression model building and its
application to forecasting. The main scope of the package is in variables selection
and models specification for cases of time series data. This includes promotional
modelling, selection between different dynamic regressions with non-standard
distributions of errors, selection based on cross validation, solutions to the fat
regression model problem and more. Models developed in the package are tailored
specifically for forecasting purposes. So as a results there are several methods
that allow producing forecasts from these models and visualising them.
Author: Ivan Svetunkov [aut, cre] (Lecturer at Centre for Marketing Analytics
and Forecasting, Lancaster University, UK),
Yves R. Sagaert [ctb] (Visiting Research at Centre for Marketing
Analytics and Forecasting, Lancaster University, UK)
Maintainer: Ivan Svetunkov <ivan@svetunkov.ru>
Diff between greybox versions 0.6.8 dated 2021-03-12 and 0.6.9 dated 2021-04-17
DESCRIPTION | 8 +- MD5 | 54 +++++++++---------- NAMESPACE | 2 NEWS | 16 +++++ R/alm.R | 23 ++++++-- R/association.R | 4 - R/coefbootstrap.R | 9 +-- R/cramer.R | 10 +-- R/greybox-package.R | 2 R/mcor.R | 67 +++++++++++------------- R/methods.R | 67 ++++++++++++++++++------ R/spread.R | 34 ++++++------ README.md | 11 ++-- build/partial.rdb |binary build/vignette.rds |binary inst/doc/alm.html | 118 +++++++++++++++++++++---------------------- inst/doc/greybox.Rmd | 1 inst/doc/greybox.html | 5 + inst/doc/maUsingGreybox.html | 8 +- inst/doc/ro.html | 16 ++--- man/InformationCriteria.Rd | 8 ++ man/greybox.Rd | 2 man/lmCombine.Rd | 3 + man/lmDynamic.Rd | 3 + man/nparam.Rd | 18 ++++-- man/plot.greybox.Rd | 4 - man/stepwise.Rd | 3 + vignettes/greybox.Rmd | 1 28 files changed, 297 insertions(+), 200 deletions(-)
Title: A Framework for Robust Shiny Applications
Description: An opinionated framework for building a
production-ready 'Shiny' application. This package contains a series
of tools for building a robust 'Shiny' application from start to
finish.
Author: Colin Fay [cre, aut] (<https://orcid.org/0000-0001-7343-1846>),
Vincent Guyader [aut] (<https://orcid.org/0000-0003-0671-9270>,
previous maintainer),
Sébastien Rochette [aut] (<https://orcid.org/0000-0002-1565-9313>),
Cervan Girard [aut] (<https://orcid.org/0000-0002-4816-4624>),
Novica Nakov [ctb],
David Granjon [ctb],
ThinkR [cph]
Maintainer: Colin Fay <contact@colinfay.me>
Diff between golem versions 0.2.1 dated 2020-03-05 and 0.3.1 dated 2021-04-17
golem-0.2.1/golem/R/add_deploy_helpers.R |only golem-0.2.1/golem/R/add_ressource_path.R |only golem-0.2.1/golem/R/zzz.R |only golem-0.3.1/golem/DESCRIPTION | 45 golem-0.3.1/golem/MD5 | 220 ++-- golem-0.3.1/golem/NAMESPACE | 30 golem-0.3.1/golem/NEWS.md | 120 ++ golem-0.3.1/golem/R/add_dockerfiles.R |only golem-0.3.1/golem/R/add_files.R | 504 ++++++++-- golem-0.3.1/golem/R/add_modules.R | 185 ++- golem-0.3.1/golem/R/add_r_files.R | 79 + golem-0.3.1/golem/R/add_resource_path.R |only golem-0.3.1/golem/R/add_rstudio_files.R |only golem-0.3.1/golem/R/browser_button.R | 5 golem-0.3.1/golem/R/bundle_resources.R | 21 golem-0.3.1/golem/R/config.R | 20 golem-0.3.1/golem/R/create_golem.R | 179 ++- golem-0.3.1/golem/R/desc.R | 60 + golem-0.3.1/golem/R/disable_autoload.R |only golem-0.3.1/golem/R/enable_roxygenize.R |only golem-0.3.1/golem/R/get_sysreqs.R | 53 - golem-0.3.1/golem/R/gobals.R |only golem-0.3.1/golem/R/golem-package.R | 2 golem-0.3.1/golem/R/is_running.R |only golem-0.3.1/golem/R/js.R | 124 ++ golem-0.3.1/golem/R/make_dev.R | 15 golem-0.3.1/golem/R/options.R | 46 golem-0.3.1/golem/R/reload.R | 112 +- golem-0.3.1/golem/R/run_dev.R |only golem-0.3.1/golem/R/sanity_check.R |only golem-0.3.1/golem/R/templates.R |only golem-0.3.1/golem/R/test_helpers.R | 117 ++ golem-0.3.1/golem/R/use_favicon.R | 15 golem-0.3.1/golem/R/use_files.R | 401 +++++++ golem-0.3.1/golem/R/use_recommended.R | 42 golem-0.3.1/golem/R/use_utils.R | 3 golem-0.3.1/golem/R/utils.R | 92 + golem-0.3.1/golem/R/with_opt.R | 83 + golem-0.3.1/golem/R/yesno.R | 6 golem-0.3.1/golem/README.md | 71 - golem-0.3.1/golem/build/vignette.rds |binary golem-0.3.1/golem/inst/doc/a_start.R | 5 golem-0.3.1/golem/inst/doc/a_start.Rmd | 9 golem-0.3.1/golem/inst/doc/a_start.html | 299 +---- golem-0.3.1/golem/inst/doc/b_dev.R | 4 golem-0.3.1/golem/inst/doc/b_dev.Rmd | 7 golem-0.3.1/golem/inst/doc/b_dev.html | 327 +----- golem-0.3.1/golem/inst/doc/c_deploy.Rmd | 2 golem-0.3.1/golem/inst/doc/c_deploy.html | 290 +---- golem-0.3.1/golem/inst/doc/d_js.html | 244 ---- golem-0.3.1/golem/inst/doc/e_config.html | 319 +----- golem-0.3.1/golem/inst/doc/f_extending_golem.R |only golem-0.3.1/golem/inst/doc/f_extending_golem.Rmd |only golem-0.3.1/golem/inst/doc/f_extending_golem.html |only golem-0.3.1/golem/inst/doc/z_golem_cheatsheet.html | 197 --- golem-0.3.1/golem/inst/mantests |only golem-0.3.1/golem/inst/manualtests/script.R | 2 golem-0.3.1/golem/inst/rstudio/addins.dcf | 5 golem-0.3.1/golem/inst/rstudio/templates/project/create_golem.dcf | 12 golem-0.3.1/golem/inst/shinyexample/DESCRIPTION | 2 golem-0.3.1/golem/inst/shinyexample/NAMESPACE | 1 golem-0.3.1/golem/inst/shinyexample/R/app_config.R | 21 golem-0.3.1/golem/inst/shinyexample/R/app_server.R | 4 golem-0.3.1/golem/inst/shinyexample/R/app_ui.R | 2 golem-0.3.1/golem/inst/shinyexample/R/run_app.R | 20 golem-0.3.1/golem/inst/shinyexample/dev/01_start.R | 9 golem-0.3.1/golem/inst/shinyexample/dev/02_dev.R | 44 golem-0.3.1/golem/inst/shinyexample/dev/03_deploy.R | 5 golem-0.3.1/golem/inst/shinyexample/man/run_app.Rd | 31 golem-0.3.1/golem/inst/utils/golem-js.js | 4 golem-0.3.1/golem/inst/utils/golem_utils_ui.R | 108 +- golem-0.3.1/golem/inst/utils/test-golem-recommended.R | 38 golem-0.3.1/golem/man/add_files.Rd | 106 +- golem-0.3.1/golem/man/add_module.Rd | 42 golem-0.3.1/golem/man/add_resource_path.Rd | 8 golem-0.3.1/golem/man/addins.Rd | 2 golem-0.3.1/golem/man/amend_golem_config.Rd | 14 golem-0.3.1/golem/man/browser_button.Rd | 3 golem-0.3.1/golem/man/bundle_resources.Rd | 27 golem-0.3.1/golem/man/create_golem.Rd | 46 golem-0.3.1/golem/man/detach_all_attached.Rd | 3 golem-0.3.1/golem/man/disable_autoload.Rd |only golem-0.3.1/golem/man/dockerfiles.Rd | 100 + golem-0.3.1/golem/man/document_and_reload.Rd | 37 golem-0.3.1/golem/man/favicon.Rd | 19 golem-0.3.1/golem/man/file_creation.Rd | 35 golem-0.3.1/golem/man/fill_desc.Rd | 19 golem-0.3.1/golem/man/get_golem_options.Rd | 41 golem-0.3.1/golem/man/get_sysreqs.Rd | 15 golem-0.3.1/golem/man/golem.Rd | 11 golem-0.3.1/golem/man/golem_js.Rd | 126 ++ golem-0.3.1/golem/man/golem_opts.Rd | 46 golem-0.3.1/golem/man/is_running.Rd |only golem-0.3.1/golem/man/made_dev.Rd | 3 golem-0.3.1/golem/man/make_dev.Rd | 3 golem-0.3.1/golem/man/module_template.Rd |only golem-0.3.1/golem/man/prod.Rd | 2 golem-0.3.1/golem/man/project_hook.Rd |only golem-0.3.1/golem/man/rstudio_deploy.Rd | 11 golem-0.3.1/golem/man/run_dev.Rd |only golem-0.3.1/golem/man/sanity_check.Rd |only golem-0.3.1/golem/man/template.Rd |only golem-0.3.1/golem/man/testhelpers.Rd | 7 golem-0.3.1/golem/man/use_files.Rd | 99 + golem-0.3.1/golem/man/use_recommended.Rd | 29 golem-0.3.1/golem/man/utils_files.Rd | 3 golem-0.3.1/golem/man/with_golem_options.Rd | 9 golem-0.3.1/golem/tests/testthat/helper-config.R | 1 golem-0.3.1/golem/tests/testthat/test-add_deploy_helpers.R | 93 + golem-0.3.1/golem/tests/testthat/test-add_files.R | 59 + golem-0.3.1/golem/tests/testthat/test-add_modules.R | 12 golem-0.3.1/golem/tests/testthat/test-add_r_files.R | 2 golem-0.3.1/golem/tests/testthat/test-desc.R | 1 golem-0.3.1/golem/tests/testthat/test-extra_sysreqs.R |only golem-0.3.1/golem/tests/testthat/test-favicon.R | 4 golem-0.3.1/golem/tests/testthat/test-is_running.R |only golem-0.3.1/golem/tests/testthat/test-use_recomended.R | 24 golem-0.3.1/golem/tests/testthat/test-use_utils.R | 2 golem-0.3.1/golem/tests/testthat/test-zreload.R | 5 golem-0.3.1/golem/tests/testthat/test-zzzzzzzzzz.R | 16 golem-0.3.1/golem/vignettes/a_start.Rmd | 9 golem-0.3.1/golem/vignettes/b_dev.Rmd | 7 golem-0.3.1/golem/vignettes/c_deploy.Rmd | 2 golem-0.3.1/golem/vignettes/f_extending_golem.Rmd |only golem-0.3.1/golem/vignettes/rstudioprojecthook.png |only 125 files changed, 3707 insertions(+), 2057 deletions(-)
Title: Gaussian Mixture Graphical Model Learning and Inference
Description: Gaussian mixture graphical models include Bayesian networks and
dynamic Bayesian networks (their temporal extension) whose local probability
distributions are described by Gaussian mixture models. They are powerful
tools for graphically and quantitatively representing nonlinear dependencies
between continuous variables. This package provides a complete framework to
create, manipulate, learn the structure and the parameters, and perform
inference in these models. Most of the algorithms are described in the PhD
thesis of Roos (2018) <https://tel.archives-ouvertes.fr/tel-01943718>.
Author: Jérémy Roos [aut, cre, cph],
RATP Group [fnd, cph]
Maintainer: Jérémy Roos <jeremy.roos@gmail.com>
Diff between gmgm versions 1.0.1 dated 2020-11-14 and 1.0.2 dated 2021-04-17
gmgm-1.0.1/gmgm/man/figures/network.png |only gmgm-1.0.2/gmgm/DESCRIPTION | 10 - gmgm-1.0.2/gmgm/MD5 | 36 +++--- gmgm-1.0.2/gmgm/NEWS.md | 9 + gmgm-1.0.2/gmgm/R/BIC.R | 13 +- gmgm-1.0.2/gmgm/R/aggregation.R | 8 - gmgm-1.0.2/gmgm/R/filtering.R | 41 +++---- gmgm-1.0.2/gmgm/R/gmgm-package.R | 2 gmgm-1.0.2/gmgm/R/gmm.R | 30 +++-- gmgm-1.0.2/gmgm/R/inference.R | 16 +- gmgm-1.0.2/gmgm/R/logLik.R | 14 +- gmgm-1.0.2/gmgm/R/particles.R | 8 + gmgm-1.0.2/gmgm/R/prediction.R | 52 ++++----- gmgm-1.0.2/gmgm/R/propagation.R | 36 +++--- gmgm-1.0.2/gmgm/R/smoothing.R | 43 +++---- gmgm-1.0.2/gmgm/R/struct_learn.R | 14 +- gmgm-1.0.2/gmgm/README.md | 144 +++++++++++++++++++++----- gmgm-1.0.2/gmgm/man/figures/ellipses.png |only gmgm-1.0.2/gmgm/man/figures/network_init.png |only gmgm-1.0.2/gmgm/man/figures/network_learn.png |only gmgm-1.0.2/gmgm/tests/testthat/test-gmm.R | 14 ++ 21 files changed, 304 insertions(+), 186 deletions(-)
Title: Safe Color Set for Color Blindness
Description: Provide the safe color set for color blindness,
the simulator of protanopia, deuteranopia.
The color sets are collected from:
Wong, B. (2011) <doi:10.1038/nmeth.1618>, and
<http://mkweb.bcgsc.ca/biovis2012/>.
The simulations of the appearance of the colors to color-deficient
viewers were based on algorithms in
Vienot, F., Brettel, H. and Mollon, J.D. (1999)
<doi:10.1002/(SICI)1520-6378(199908)24:4%3C243::AID-COL5%3E3.0.CO;2-3>.
The cvdPlot() function to generate 'ggplot' grobs of simulations
were modified from <https://github.com/clauswilke/colorblindr>.
Author: Jianhong Ou [aut, cre] (<https://orcid.org/0000-0002-8652-2488>)
Maintainer: Jianhong Ou <jianhong.ou@duke.edu>
Diff between colorBlindness versions 0.1.6 dated 2020-03-16 and 0.1.9 dated 2021-04-17
DESCRIPTION | 16 MD5 | 22 NEWS | 13 R/palette.R | 2 build/vignette.rds |binary inst/doc/colorBlindness.Rmd | 3 inst/doc/colorBlindness.html | 1416 ++++++++++++++++++++++++++++++++++++++++--- man/colorPalette.Rd | 42 + man/safeColors.Rd | 20 man/setPDFopt.Rd | 4 vignettes/bibliography.bib | 24 vignettes/colorBlindness.Rmd | 3 12 files changed, 1456 insertions(+), 109 deletions(-)
More information about colorBlindness at CRAN
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