Title: Methods in Structural Reliability
Description: Various reliability analysis methods for rare event inference:1) computing failure probability (probability that the output of a numerical model exceeds a threshold), 2) computing quantile of low or high-order, 3) Wilks formula to compute quantile(s) from a sample or the size of the required i.i.d. sample.
Author: Clement WALTER, Gilles DEFAUX, Bertrand IOOSS, Vincent MOUTOUSSAMY with contributions from Nicolas BOUSQUET, Claire CANNAMELA and Paul LEMAITRE
Maintainer: Bertrand Iooss <biooss@yahoo.fr>
Diff between mistral versions 2.1.0 dated 2016-04-03 and 2.2.1 dated 2021-04-18
mistral-2.1.0/mistral/R/generateWithlrmM.R |only mistral-2.1.0/mistral/tests |only mistral-2.2.1/mistral/DESCRIPTION | 27 mistral-2.2.1/mistral/MD5 | 116 +- mistral-2.2.1/mistral/NAMESPACE | 126 +- mistral-2.2.1/mistral/R/AKMCS.R | 666 ++++++------ mistral-2.2.1/mistral/R/BMP.R |only mistral-2.2.1/mistral/R/BSS.R |only mistral-2.2.1/mistral/R/FORM.R | 476 ++++---- mistral-2.2.1/mistral/R/FORMv0.R |only mistral-2.2.1/mistral/R/IRW.R | 108 +- mistral-2.2.1/mistral/R/MCMCcovariance.R | 94 - mistral-2.2.1/mistral/R/MP.R | 180 +-- mistral-2.2.1/mistral/R/MetaIS.R | 1178 +++++++++++----------- mistral-2.2.1/mistral/R/MetropolisHastings.R | 195 ++- mistral-2.2.1/mistral/R/MonteCarlo.R | 282 ++--- mistral-2.2.1/mistral/R/RcppExports.R |only mistral-2.2.1/mistral/R/S2MART.R | 372 +++--- mistral-2.2.1/mistral/R/SMART.R | 992 ++++++++++-------- mistral-2.2.1/mistral/R/SubsetSimulation.R | 84 - mistral-2.2.1/mistral/R/UtoX.R | 291 +++-- mistral-2.2.1/mistral/R/alpha2.R |only mistral-2.2.1/mistral/R/clusterize.R | 57 - mistral-2.2.1/mistral/R/computeQuickKrigcov.R |only mistral-2.2.1/mistral/R/estimateSUR.R |only mistral-2.2.1/mistral/R/estimateSURfast.R |only mistral-2.2.1/mistral/R/fSUR.R |only mistral-2.2.1/mistral/R/generateK.R |only mistral-2.2.1/mistral/R/generateWithlrmM_old.R |only mistral-2.2.1/mistral/R/getLHS.R |only mistral-2.2.1/mistral/R/getPPPfast.R |only mistral-2.2.1/mistral/R/getQuantile.R | 40 mistral-2.2.1/mistral/R/getU.R |only mistral-2.2.1/mistral/R/getXi.R |only mistral-2.2.1/mistral/R/ok.R |only mistral-2.2.1/mistral/R/plotXi.R |only mistral-2.2.1/mistral/R/precomputeUpdateData.R |only mistral-2.2.1/mistral/R/predict_nobias_km.R |only mistral-2.2.1/mistral/R/quantileWilks.R | 128 +- mistral-2.2.1/mistral/R/trainModel.R | 21 mistral-2.2.1/mistral/R/updateSd.R |only mistral-2.2.1/mistral/R/updateSd_old.R |only mistral-2.2.1/mistral/build |only mistral-2.2.1/mistral/data/cantilever.rda |only mistral-2.2.1/mistral/data/oscillator_d6.rda |only mistral-2.2.1/mistral/data/oscillator_d8.rda |only mistral-2.2.1/mistral/data/waarts.rda |binary mistral-2.2.1/mistral/inst/doc |only mistral-2.2.1/mistral/inst/testcases |only mistral-2.2.1/mistral/man/AKMCS.Rd | 66 - mistral-2.2.1/mistral/man/BMP.Rd |only mistral-2.2.1/mistral/man/FORM.Rd | 192 +-- mistral-2.2.1/mistral/man/FORMv0.Rd |only mistral-2.2.1/mistral/man/IRW.Rd | 47 mistral-2.2.1/mistral/man/MP.Rd | 41 mistral-2.2.1/mistral/man/MetaIS.Rd | 73 - mistral-2.2.1/mistral/man/MetropolisHastings.Rd |only mistral-2.2.1/mistral/man/Mistral-package.Rd | 158 +- mistral-2.2.1/mistral/man/MonteCarlo.Rd | 36 mistral-2.2.1/mistral/man/S2MART.Rd | 28 mistral-2.2.1/mistral/man/SMART.Rd | 264 ++-- mistral-2.2.1/mistral/man/SubsetSimulation.Rd | 43 mistral-2.2.1/mistral/man/XtoU.Rd |only mistral-2.2.1/mistral/man/cantilever.Rd |only mistral-2.2.1/mistral/man/estimateSUR.Rd |only mistral-2.2.1/mistral/man/generateK.Rd |only mistral-2.2.1/mistral/man/ok.Rd |only mistral-2.2.1/mistral/man/oscillator_d6.Rd |only mistral-2.2.1/mistral/man/precomputeUpdateData.Rd |only mistral-2.2.1/mistral/man/twodof.Rd | 1 mistral-2.2.1/mistral/man/updateSd.Rd |only mistral-2.2.1/mistral/man/updateSd.old.Rd |only mistral-2.2.1/mistral/src |only mistral-2.2.1/mistral/vignettes |only 74 files changed, 3561 insertions(+), 2821 deletions(-)
Title: Aligned Corpus Toolkit
Description: The Aligned Corpus Toolkit (act) is designed for linguists that work with time aligned transcription data. It offers functions to import and export various annotation file formats ('ELAN' .eaf, 'EXMARaLDA .exb and 'Praat' .TextGrid files), create print transcripts in the style of conversation analysis, search transcripts (span searches across multiple annotations, search in normalized annotations, make concordances etc.), export and re-import search results (.csv and 'Excel' .xlsx format), create cuts for the search results (print transcripts, audio/video cuts using 'FFmpeg' and video sub titles in 'Subrib title' .srt format), modify the data in a corpus (search/replace, delete, filter etc.), interact with 'Praat' using 'Praat'-scripts, and exchange data with the 'rPraat' package. The package is itself written in R and may be expanded by other users.
Author: Oliver Ehmer [aut, cre]
Maintainer: Oliver Ehmer <oliver.ehmer@romanistik.uni-freiburg.de>
Diff between act versions 1.0.1 dated 2021-02-22 and 1.0.2 dated 2021-04-18
act-1.0.1/act/R/anotations_all.R |only act-1.0.2/act/DESCRIPTION | 8 act-1.0.2/act/MD5 | 162 ++++++++-------- act-1.0.2/act/R/act_info.R | 38 ++- act-1.0.2/act/R/act_info_summarized.R | 10 act-1.0.2/act/R/annotations_all.R |only act-1.0.2/act/R/annotations_delete.R | 2 act-1.0.2/act/R/annotations_delete_empty.R | 2 act-1.0.2/act/R/annotations_matrix.R | 12 - act-1.0.2/act/R/annotations_replace_copy.R | 14 - act-1.0.2/act/R/class_transcript.R | 2 act-1.0.2/act/R/corpus_import.R | 10 act-1.0.2/act/R/corpus_new.R | 4 act-1.0.2/act/R/export_eaf.R | 8 act-1.0.2/act/R/export_exb.R | 22 +- act-1.0.2/act/R/export_printtranscript.R | 12 - act-1.0.2/act/R/export_rpraat.R | 6 act-1.0.2/act/R/export_srt.R | 18 - act-1.0.2/act/R/export_textgrid.R | 14 - act-1.0.2/act/R/helper_format_time.R | 8 act-1.0.2/act/R/helper_no_export.R | 10 act-1.0.2/act/R/helper_tiers_merge_tables.R | 10 act-1.0.2/act/R/helper_tiers_new_table.R | 8 act-1.0.2/act/R/helper_tiers_sort_table.R | 28 +- act-1.0.2/act/R/helper_transcriptNames_make.R | 4 act-1.0.2/act/R/import.R | 6 act-1.0.2/act/R/import_eaf.R | 40 +-- act-1.0.2/act/R/import_exb.R | 24 +- act-1.0.2/act/R/import_rpraat.R | 8 act-1.0.2/act/R/import_textgrid.R | 18 - act-1.0.2/act/R/media_assign.R | 8 act-1.0.2/act/R/media_delete.R | 2 act-1.0.2/act/R/search_concordance.R | 2 act-1.0.2/act/R/search_cuts_media.R | 59 ++--- act-1.0.2/act/R/search_cuts_printtranscript.R | 16 - act-1.0.2/act/R/search_cuts_srt.R | 12 - act-1.0.2/act/R/search_import_export.R | 6 act-1.0.2/act/R/search_meta.R | 8 act-1.0.2/act/R/search_new.R | 2 act-1.0.2/act/R/search_openresult_inelan.R | 8 act-1.0.2/act/R/search_openresult_inpraat.R | 2 act-1.0.2/act/R/search_openresult_inquicktime.R | 8 act-1.0.2/act/R/search_playresults_inquicktime.R | 2 act-1.0.2/act/R/search_run.R | 6 act-1.0.2/act/R/search_sub.R | 14 - act-1.0.2/act/R/search_transcript_content.R | 2 act-1.0.2/act/R/search_transcript_fulltext.R | 2 act-1.0.2/act/R/tiers_add.R | 32 +-- act-1.0.2/act/R/tiers_all.R | 8 act-1.0.2/act/R/tiers_convert.R | 18 - act-1.0.2/act/R/tiers_delete.R | 6 act-1.0.2/act/R/transcripts_add.R | 8 act-1.0.2/act/R/transcripts_cure.R | 14 - act-1.0.2/act/R/transcripts_cure_single.R | 6 act-1.0.2/act/R/transcripts_filter.R | 2 act-1.0.2/act/R/transcripts_filter_single.R | 10 act-1.0.2/act/R/transcripts_merge.R | 4 act-1.0.2/act/R/transcripts_rename.R | 2 act-1.0.2/act/R/transcripts_update_fulltexts.R | 10 act-1.0.2/act/R/transcripts_update_normalization.R | 6 act-1.0.2/act/inst/examples/helper_tiers_merge_tables.R | 4 act-1.0.2/act/inst/examples/helper_tiers_new_table.R | 2 act-1.0.2/act/inst/examples/helper_tiers_sort_table.R | 10 act-1.0.2/act/inst/examples/import_eaf.R | 3 act-1.0.2/act/inst/examples/import_rpraat.R | 2 act-1.0.2/act/inst/examples/import_textgrid.R | 2 act-1.0.2/act/inst/examples/search_cuts_media.R | 4 act-1.0.2/act/inst/examples/tiers_delete.R | 2 act-1.0.2/act/inst/examples/transcripts_cure.R | 2 act-1.0.2/act/inst/examples/transcripts_cure_single.R | 6 act-1.0.2/act/inst/examples/transcripts_filter_single.R | 2 act-1.0.2/act/man/annotations_all.Rd | 2 act-1.0.2/act/man/helper_tiers_merge_tables.Rd | 4 act-1.0.2/act/man/helper_tiers_new_table.Rd | 2 act-1.0.2/act/man/helper_tiers_sort_table.Rd | 10 act-1.0.2/act/man/import_eaf.Rd | 3 act-1.0.2/act/man/import_rpraat.Rd | 2 act-1.0.2/act/man/import_textgrid.Rd | 2 act-1.0.2/act/man/search_cuts_media.Rd | 4 act-1.0.2/act/man/tiers_delete.Rd | 2 act-1.0.2/act/man/transcripts_cure.Rd | 2 act-1.0.2/act/man/transcripts_cure_single.Rd | 6 act-1.0.2/act/man/transcripts_filter_single.Rd | 2 83 files changed, 445 insertions(+), 428 deletions(-)
Title: Fitting Second-Order Tensor Data
Description: An implementation of fitting generalized linear models on
second-order tensor type data. The functions within this package mainly focus on
parameter estimation, including parameter coefficients and standard deviation.
Author: Mark Chen [aut, cre],
Sheng-Mao Chang [aut],
Wenbin Lu [aut],
Jung-Ying Tzeng [aut]
Maintainer: Mark Chen <l501l501l@gmail.com>
Diff between TensorTest2D versions 1.0.0 dated 2020-11-05 and 1.0.1 dated 2021-04-18
DESCRIPTION | 9 MD5 | 22 +- NAMESPACE | 7 R/TRtest.omics.R | 451 ++++++++++++++++++++++++++------------------------ R/mnist_mp2c2-data.R |only R/omics-data.R |only R/summary.tsglm.R | 5 R/util.tsglm.R |only data |only man/TRtest.omics.Rd | 9 man/drawpixelmarks.Rd |only man/mnist_mp2c2.Rd |only man/omics.Rd |only man/plot.tsglm.Rd |only man/predict.tsglm.Rd |only man/summary.tsglm.Rd | 5 16 files changed, 277 insertions(+), 231 deletions(-)
Title: Sequential Parameter Optimization Toolbox
Description: A set of tools for model-based optimization and tuning of
algorithms. It includes surrogate models, optimizers, and design of experiment
approaches. The main interface is spot, which uses sequentially updated
surrogate models for the purpose of efficient optimization. The main goal is
to ease the burden of objective function evaluations, when a single evaluation
requires a significant amount of resources.
Author: Thomas Bartz-Beielstein [aut, cre]
(<https://orcid.org/0000-0002-5938-5158>),
Joerg Stork [aut] (0000-0002-7471-3498),
Martin Zaefferer [aut] (<https://orcid.org/0000-0003-2372-2092>),
Margarita Rebolledo [ctb],
Christian Lasarczyk [ctb],
Frederik Rehbach [aut] (<https://orcid.org/0000-0003-0922-8629>)
Maintainer: Thomas Bartz-Beielstein <tbb@bartzundbartz.de>
Diff between SPOT versions 2.3.0 dated 2021-03-10 and 2.4.2 dated 2021-04-18
DESCRIPTION | 10 MD5 | 46 NAMESPACE | 7 NEWS.md | 18 R/buildBO.R |only R/buildKrigingForrester.R | 957 +++++++++++--------- R/initialInputCheck.R | 2 R/reportSensitivityAnalysis.R | 24 build/partial.rdb |binary build/vignette.rds |binary inst/doc/SPOTVignetteNutshell.R | 5 inst/doc/SPOTVignetteNutshell.Rmd | 9 inst/doc/SPOTVignetteNutshell.html | 534 +++++------ man/buildBO.Rd |only man/buildKriging.Rd | 16 man/normalizeMatrix.Rd | 2 man/normalizeMatrix2.Rd | 2 man/predict.kriging.Rd | 2 man/predict.spotBOModel.Rd |only man/predictKrigingReinterpolation.Rd | 4 man/print.spotBOModel.Rd |only man/sequentialBifurcation.Rd | 25 man/thetaNugget.Rd |only man/thetaNuggetGradient.Rd |only tests/testthat/Rplots.pdf |binary tests/testthat/test.initialInputCheck.xLowerUpper.R | 30 vignettes/SPOTVignetteNutshell.Rmd | 9 27 files changed, 929 insertions(+), 773 deletions(-)
Title: Perform Spatial Error Estimation and Variable Importance in
Parallel
Description: Implements spatial error estimation and
permutation-based variable importance measures for predictive models
using spatial cross-validation and spatial block bootstrap.
Author: Alexander Brenning [aut, cre] (<https://orcid.org/0000-0001-6640-679X>),
Patrick Schratz [aut] (<https://orcid.org/0000-0003-0748-6624>),
Tobias Herrmann [aut] (<https://orcid.org/0000-0001-9768-0708>)
Maintainer: Alexander Brenning <alexander.brenning@uni-jena.de>
Diff between sperrorest versions 3.0.1 dated 2020-05-26 and 3.0.2 dated 2021-04-18
DESCRIPTION | 10 MD5 | 28 - NEWS.md | 14 R/sperrorest_resampling.R | 41 +- README.md | 126 +++--- build/vignette.rds |binary inst/doc/custom-pred-and-model-functions.html | 242 +----------- inst/doc/spatial-modeling-use-case.R | 2 inst/doc/spatial-modeling-use-case.Rmd | 2 inst/doc/spatial-modeling-use-case.html | 508 +++++++++----------------- man/partition_disc.Rd | 7 man/partition_tiles.Rd | 1 tests/testthat/test-sperrorest-resampling.R | 7 tests/testthat/test-sperrorest.R | 2 vignettes/spatial-modeling-use-case.Rmd | 2 15 files changed, 337 insertions(+), 655 deletions(-)
Title: Core Functionality of the 'spatstat' Family
Description: Functionality for data analysis and modelling of
spatial data, mainly spatial point patterns,
in the 'spatstat' family of packages.
(Excludes analysis of spatial data on a linear network,
which is covered by the separate package 'spatstat.linnet'.)
Exploratory methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics, and kernel estimates of covariate effects. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Monte Carlo, Diggle-Cressie-Loosmore-Ford, Dao-Genton, two-stage Monte Carlo) and tests for covariate effects (Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov, ANOVA) are also supported.
Parametric models can be fitted to point pattern data using the functions ppm(), kppm(), slrm(), dppm() similar to glm(). Types of models include Poisson, Gibbs and Cox point processes, Neyman-Scott cluster processes, and determinantal point processes. Models may involve dependence on covariates, inter-point interaction, cluster formation and dependence on marks. Models are fitted by maximum likelihood, logistic regression, minimum contrast, and composite likelihood methods.
A model can be fitted to a list of point patterns (replicated point pattern data) using the function mppm(). The model can include random effects and fixed effects depending on the experimental design, in addition to all the features listed above.
Fitted point process models can be simulated, automatically. Formal hypothesis tests of a fitted model are supported (likelihood ratio test, analysis of deviance, Monte Carlo tests) along with basic tools for model selection (stepwise(), AIC()) and variable selection (sdr). Tools for validating the fitted model include simulation envelopes, residuals, residual plots and Q-Q plots, leverage and influence diagnostics, partial residuals, and added variable plots.
Author: Adrian Baddeley [aut, cre],
Rolf Turner [aut],
Ege Rubak [aut],
Kasper Klitgaard Berthelsen [ctb],
Achmad Choiruddin [ctb],
Jean-Francois Coeurjolly [ctb],
Ottmar Cronie [ctb],
Tilman Davies [ctb],
Julian Gilbey [ctb],
Yongtao Guan [ctb],
Ute Hahn [ctb],
Kassel Hingee [ctb],
Abdollah Jalilian [ctb],
Marie-Colette van Lieshout [ctb],
Greg McSwiggan [ctb],
Tuomas Rajala [ctb],
Suman Rakshit [ctb],
Dominic Schuhmacher [ctb],
Rasmus Plenge Waagepetersen [ctb],
Hangsheng Wang [ctb]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.core versions 2.0-0 dated 2021-03-23 and 2.1-2 dated 2021-04-18
DESCRIPTION | 15 - MD5 | 75 +++--- NAMESPACE | 6 NEWS | 103 +++++++++ R/cdftest.R | 16 - R/clusterfunctions.R | 2 R/densityfun.R | 19 + R/evalcovar.R | 11 R/ic.kppm.R |only R/kppm.R | 169 --------------- R/model.depends.R | 39 +-- R/mppm.R | 24 ++ R/pairs.im.R | 135 ++++++------ R/rLGCP.R | 37 ++- R/random.R | 50 +++- R/simulatekppm.R |only R/slrm.R | 469 ++++++++++++++++++++++-------------------- R/summary.mppm.R | 75 +++++- R/sysdata.rda |binary inst/doc/packagesizes.txt | 1 man/densityfun.Rd | 40 +++ man/ic.kppm.Rd |only man/kppm.Rd | 8 man/markcorr.Rd | 19 - man/methods.dppm.Rd | 2 man/pairs.im.Rd | 14 + man/plot.dppm.Rd | 9 man/plot.profilepl.Rd | 2 man/ppm.Rd | 30 +- man/residuals.dppm.Rd | 10 man/rpoint.Rd | 34 ++- man/simulate.dppm.Rd | 11 man/simulate.kppm.Rd | 50 ++++ man/slrm.Rd | 9 man/spatstat.core-internal.Rd | 7 man/vargamma.estK.Rd | 6 tests/testsAtoC.R | 31 +- tests/testsD.R | 9 tests/testsGtoJ.R | 11 tests/testsL.R | 94 ++++---- 40 files changed, 949 insertions(+), 693 deletions(-)
Title: Soil Database Interface
Description: A collection of functions for reading data from USDA-NCSS soil databases.
Author: Dylan Beaudette [aut],
Jay Skovlin [aut],
Stephen Roecker [aut],
Andrew Brown [aut, cre]
Maintainer: Andrew Brown <andrew.g.brown@usda.gov>
Diff between soilDB versions 2.5.9 dated 2021-01-26 and 2.6.1 dated 2021-04-18
soilDB-2.5.9/soilDB/man/SSURGO_spatial_query.Rd |only soilDB-2.5.9/soilDB/man/fetchSDA_component.Rd |only soilDB-2.5.9/soilDB/man/get_extended_data_from_NASIS.Rd |only soilDB-2.5.9/soilDB/man/simplfyFragmentData.Rd |only soilDB-2.6.1/soilDB/DESCRIPTION | 15 soilDB-2.6.1/soilDB/MD5 | 311 + soilDB-2.6.1/soilDB/NAMESPACE | 23 soilDB-2.6.1/soilDB/NEWS.md | 15 soilDB-2.6.1/soilDB/R/ISSR800.R | 8 soilDB-2.6.1/soilDB/R/OSDquery.R | 142 soilDB-2.6.1/soilDB/R/ROSETTA.R | 39 soilDB-2.6.1/soilDB/R/SDA-spatial.R | 91 soilDB-2.6.1/soilDB/R/SDA_hydric.R |only soilDB-2.6.1/soilDB/R/SDA_interpretations.R |only soilDB-2.6.1/soilDB/R/SDA_muaggatt.R |only soilDB-2.6.1/soilDB/R/SDA_pmgroupname.R |only soilDB-2.6.1/soilDB/R/SDA_properties.R |only soilDB-2.6.1/soilDB/R/SDA_query.R | 138 soilDB-2.6.1/soilDB/R/SSURGO_spatial_query.R | 40 soilDB-2.6.1/soilDB/R/STR.R | 58 soilDB-2.6.1/soilDB/R/WCS-utils.R | 7 soilDB-2.6.1/soilDB/R/createStaticNASIS.R |only soilDB-2.6.1/soilDB/R/dbQueryNASIS.R |only soilDB-2.6.1/soilDB/R/estimateColorMixture.R | 2 soilDB-2.6.1/soilDB/R/fetchEDIT_tools.R |only soilDB-2.6.1/soilDB/R/fetchHenry.R | 53 soilDB-2.6.1/soilDB/R/fetchKSSL.R | 143 soilDB-2.6.1/soilDB/R/fetchNASIS.R | 189 - soilDB-2.6.1/soilDB/R/fetchNASISLabData.R | 130 soilDB-2.6.1/soilDB/R/fetchNASISWebReport.R |only soilDB-2.6.1/soilDB/R/fetchNASIS_components.R | 265 - soilDB-2.6.1/soilDB/R/fetchNASIS_pedons.R | 374 +- soilDB-2.6.1/soilDB/R/fetchNASIS_report.R | 173 - soilDB-2.6.1/soilDB/R/fetchNOAA.R | 2 soilDB-2.6.1/soilDB/R/fetchPedonPC.R | 205 - soilDB-2.6.1/soilDB/R/fetchRaCA.R | 85 soilDB-2.6.1/soilDB/R/fetchSCAN.R | 173 - soilDB-2.6.1/soilDB/R/fetchSDA_spatial.R | 8 soilDB-2.6.1/soilDB/R/fetchVegdata.R | 68 soilDB-2.6.1/soilDB/R/getHzErrorsNASIS.R | 73 soilDB-2.6.1/soilDB/R/getHzErrorsPedonPC.R | 47 soilDB-2.6.1/soilDB/R/get_NASIS_table_key_by_name.R |only soilDB-2.6.1/soilDB/R/get_NASIS_table_name_by_purpose.R |only soilDB-2.6.1/soilDB/R/get_OSD_JSON.R |only soilDB-2.6.1/soilDB/R/get_RMF_from_NASIS_db.R | 27 soilDB-2.6.1/soilDB/R/get_colors_from_NASIS_db.R | 42 soilDB-2.6.1/soilDB/R/get_colors_from_pedon_db.R | 178 - soilDB-2.6.1/soilDB/R/get_component_data_from_NASIS_db.R | 430 +- soilDB-2.6.1/soilDB/R/get_component_from_GDB.R | 60 soilDB-2.6.1/soilDB/R/get_component_from_LIMS.R | 320 - soilDB-2.6.1/soilDB/R/get_component_from_SDA.R | 180 + soilDB-2.6.1/soilDB/R/get_concentrations_from_NASIS_db.R | 25 soilDB-2.6.1/soilDB/R/get_cosoilmoist_from_LIMS.R | 2 soilDB-2.6.1/soilDB/R/get_cosoilmoist_from_NASIS.R | 69 soilDB-2.6.1/soilDB/R/get_extended_data_from_NASIS_db.R | 251 - soilDB-2.6.1/soilDB/R/get_extended_data_from_pedon_db.R | 285 - soilDB-2.6.1/soilDB/R/get_hz_data_from_NASIS_db.R | 50 soilDB-2.6.1/soilDB/R/get_hz_data_from_pedon_db.R | 162 soilDB-2.6.1/soilDB/R/get_lablayer_data_from_NASIS_db.R | 38 soilDB-2.6.1/soilDB/R/get_labpedon_data_from_NASIS_db.R | 40 soilDB-2.6.1/soilDB/R/get_phfmp_from_NASIS_db.R | 23 soilDB-2.6.1/soilDB/R/get_phlabresults_data_from_NASIS_db.R | 32 soilDB-2.6.1/soilDB/R/get_projectmapunit_from_NASIS.R | 23 soilDB-2.6.1/soilDB/R/get_site_data_from_NASIS_db.R | 68 soilDB-2.6.1/soilDB/R/get_site_data_from_pedon_db.R | 159 soilDB-2.6.1/soilDB/R/get_soilseries_from_NASIS.R | 50 soilDB-2.6.1/soilDB/R/get_text_notes_from_NASIS_db.R | 101 soilDB-2.6.1/soilDB/R/get_veg_data_from_NASIS_db.R | 116 soilDB-2.6.1/soilDB/R/get_veg_from_AK_Site.R | 72 soilDB-2.6.1/soilDB/R/get_veg_from_MT_veg_db.R | 74 soilDB-2.6.1/soilDB/R/get_veg_from_NPS_PLOTS_db.R | 61 soilDB-2.6.1/soilDB/R/get_veg_other_from_MT_veg_db.R | 75 soilDB-2.6.1/soilDB/R/get_veg_species_from_MT_veg_db.R | 70 soilDB-2.6.1/soilDB/R/get_vegplot_data_from_NASIS_db.R | 314 - soilDB-2.6.1/soilDB/R/mix_and_clean_colors.R | 39 soilDB-2.6.1/soilDB/R/mukey-WCS.R | 14 soilDB-2.6.1/soilDB/R/openNASISchannel.R | 89 soilDB-2.6.1/soilDB/R/parseWebReport.R | 27 soilDB-2.6.1/soilDB/R/seriesExtent.R | 47 soilDB-2.6.1/soilDB/R/siblings.R | 50 soilDB-2.6.1/soilDB/R/simplfyFragmentData.R | 135 soilDB-2.6.1/soilDB/R/simplifyArtifactData.R | 83 soilDB-2.6.1/soilDB/R/simplifyColorData.R | 81 soilDB-2.6.1/soilDB/R/soilDB-package.R |only soilDB-2.6.1/soilDB/R/taxaExtent.R | 19 soilDB-2.6.1/soilDB/R/uncode.R | 267 - soilDB-2.6.1/soilDB/R/utils.R | 1715 +++++----- soilDB-2.6.1/soilDB/R/waterDayYear.R | 25 soilDB-2.6.1/soilDB/build/partial.rdb |binary soilDB-2.6.1/soilDB/data/NASIS_table_column_keys.rda |only soilDB-2.6.1/soilDB/data/SCAN_SNOTEL_metadata.rda |binary soilDB-2.6.1/soilDB/man/ISSR800.wcs.Rd | 27 soilDB-2.6.1/soilDB/man/KSSL_VG_model.Rd | 14 soilDB-2.6.1/soilDB/man/NASIS_table_column_keys.Rd |only soilDB-2.6.1/soilDB/man/OSDquery.Rd | 44 soilDB-2.6.1/soilDB/man/ROSETTA.Rd | 46 soilDB-2.6.1/soilDB/man/SCAN_SNOTEL_metadata.Rd | 47 soilDB-2.6.1/soilDB/man/SDA_query.Rd | 40 soilDB-2.6.1/soilDB/man/SDA_spatialQuery.Rd | 45 soilDB-2.6.1/soilDB/man/STRplot.Rd | 52 soilDB-2.6.1/soilDB/man/SoilWeb_spatial_query.Rd |only soilDB-2.6.1/soilDB/man/createStaticNASIS.Rd |only soilDB-2.6.1/soilDB/man/dbConnectNASIS.Rd |only soilDB-2.6.1/soilDB/man/dbQueryNASIS.Rd |only soilDB-2.6.1/soilDB/man/dot-dump_NASIS_table.Rd |only soilDB-2.6.1/soilDB/man/dot-get_NASIS_table_key_by_name.Rd |only soilDB-2.6.1/soilDB/man/dot-get_NASIS_table_name_by_purpose.Rd |only soilDB-2.6.1/soilDB/man/estimateSTR.Rd | 69 soilDB-2.6.1/soilDB/man/fetchGDB.Rd | 97 soilDB-2.6.1/soilDB/man/fetchHenry.Rd | 127 soilDB-2.6.1/soilDB/man/fetchKSSL.Rd | 116 soilDB-2.6.1/soilDB/man/fetchNASIS.Rd | 129 soilDB-2.6.1/soilDB/man/fetchNASISLabData.Rd | 41 soilDB-2.6.1/soilDB/man/fetchNASISWebReport.Rd | 190 - soilDB-2.6.1/soilDB/man/fetchOSD.Rd | 56 soilDB-2.6.1/soilDB/man/fetchPedonPC.Rd | 45 soilDB-2.6.1/soilDB/man/fetchRaCA.Rd | 19 soilDB-2.6.1/soilDB/man/fetchSCAN.Rd | 59 soilDB-2.6.1/soilDB/man/fetchSDA.Rd |only soilDB-2.6.1/soilDB/man/fetchSDA_spatial.Rd | 4 soilDB-2.6.1/soilDB/man/fetchVegdata.Rd |only soilDB-2.6.1/soilDB/man/format_SQL_in_statement.Rd | 10 soilDB-2.6.1/soilDB/man/getHzErrorsNASIS.Rd |only soilDB-2.6.1/soilDB/man/get_EDIT_ecoclass_by_geoUnit.Rd |only soilDB-2.6.1/soilDB/man/get_NOAA_GHCND.Rd | 2 soilDB-2.6.1/soilDB/man/get_OSD_JSON.Rd |only soilDB-2.6.1/soilDB/man/get_SDA_hydric.Rd |only soilDB-2.6.1/soilDB/man/get_SDA_interpretation.Rd |only soilDB-2.6.1/soilDB/man/get_SDA_muaggatt.Rd |only soilDB-2.6.1/soilDB/man/get_SDA_pmgroupname.Rd |only soilDB-2.6.1/soilDB/man/get_SDA_property.Rd |only soilDB-2.6.1/soilDB/man/get_colors_from_NASIS_db.Rd | 37 soilDB-2.6.1/soilDB/man/get_colors_from_pedon_db.Rd | 32 soilDB-2.6.1/soilDB/man/get_comonth_from_NASIS_db.Rd | 56 soilDB-2.6.1/soilDB/man/get_component_data_from_NASIS_db.Rd | 50 soilDB-2.6.1/soilDB/man/get_cosoilmoist_from_NASIS.Rd | 63 soilDB-2.6.1/soilDB/man/get_extended_data_from_NASIS_db.Rd |only soilDB-2.6.1/soilDB/man/get_extended_data_from_pedon_db.Rd | 53 soilDB-2.6.1/soilDB/man/get_hz_data_from_NASIS_db.Rd | 42 soilDB-2.6.1/soilDB/man/get_hz_data_from_pedon_db.Rd | 37 soilDB-2.6.1/soilDB/man/get_lablayer_data_from_NASIS_db.Rd | 39 soilDB-2.6.1/soilDB/man/get_labpedon_data_from_NASIS_db.Rd | 43 soilDB-2.6.1/soilDB/man/get_site_data_from_NASIS_db.Rd | 48 soilDB-2.6.1/soilDB/man/get_site_data_from_pedon_db.Rd | 34 soilDB-2.6.1/soilDB/man/get_soilseries_from_NASIS.Rd | 40 soilDB-2.6.1/soilDB/man/get_text_notes_from_NASIS_db.Rd | 39 soilDB-2.6.1/soilDB/man/get_veg_data_from_NASIS_db.Rd | 34 soilDB-2.6.1/soilDB/man/get_veg_from_AK_Site.Rd | 32 soilDB-2.6.1/soilDB/man/get_veg_from_MT_veg_db.Rd | 34 soilDB-2.6.1/soilDB/man/get_veg_from_NPS_PLOTS_db.Rd | 35 soilDB-2.6.1/soilDB/man/get_veg_other_from_MT_veg_db.Rd | 34 soilDB-2.6.1/soilDB/man/get_veg_species_from_MT_veg_db.Rd | 34 soilDB-2.6.1/soilDB/man/loafercreek.Rd | 140 soilDB-2.6.1/soilDB/man/local_NASIS_defined.Rd | 11 soilDB-2.6.1/soilDB/man/makeChunks.Rd | 4 soilDB-2.6.1/soilDB/man/make_EDIT_service_URL.Rd |only soilDB-2.6.1/soilDB/man/mix_and_clean_colors.Rd |only soilDB-2.6.1/soilDB/man/mukey.wcs.Rd | 8 soilDB-2.6.1/soilDB/man/parseWebReport.Rd | 44 soilDB-2.6.1/soilDB/man/processSDA_WKT.Rd | 12 soilDB-2.6.1/soilDB/man/seriesExtent.Rd | 4 soilDB-2.6.1/soilDB/man/siblings.Rd | 75 soilDB-2.6.1/soilDB/man/simplifyColorData.Rd | 73 soilDB-2.6.1/soilDB/man/simplifyFragmentData.Rd |only soilDB-2.6.1/soilDB/man/soilDB-package.Rd | 37 soilDB-2.6.1/soilDB/man/taxaExtent.Rd | 8 soilDB-2.6.1/soilDB/man/uncode.Rd | 93 soilDB-2.6.1/soilDB/man/us_ss_timeline.Rd | 41 soilDB-2.6.1/soilDB/man/waterDayYear.Rd | 47 soilDB-2.6.1/soilDB/tests/testthat/test-DBI.R |only soilDB-2.6.1/soilDB/tests/testthat/test-OSDquery.R | 7 soilDB-2.6.1/soilDB/tests/testthat/test-SDA_hydric.R |only soilDB-2.6.1/soilDB/tests/testthat/test-SDA_interpretations.R |only soilDB-2.6.1/soilDB/tests/testthat/test-SDA_muaggatt.R |only soilDB-2.6.1/soilDB/tests/testthat/test-SDA_pmgroupname.R |only soilDB-2.6.1/soilDB/tests/testthat/test-SDA_properties.R |only soilDB-2.6.1/soilDB/tests/testthat/test-dbQueryNASIS.R |only soilDB-2.6.1/soilDB/tests/testthat/test-fetchEDIT_tools.R |only soilDB-2.6.1/soilDB/tests/testthat/test-fetchKSSL.R | 20 soilDB-2.6.1/soilDB/tests/testthat/test-fetchNASIS.R | 65 soilDB-2.6.1/soilDB/tests/testthat/test-get_OSD_JSON.R |only 181 files changed, 6628 insertions(+), 5021 deletions(-)
Title: Exemplar Data Sets for Student Growth Percentiles (SGP) Analyses
Description: Data sets utilized by the 'SGP' package as exemplars for users to conduct their own student growth percentiles (SGP) analyses.
Author: Damian W. Betebenner [aut, cre],
Adam R. Van Iwaarden [aut],
Ben Domingue [aut]
Maintainer: Damian W. Betebenner <dbetebenner@nciea.org>
Diff between SGPdata versions 23.0-0.0 dated 2020-01-15 and 25.0-0.0 dated 2021-04-18
DESCRIPTION | 11 - MD5 | 26 +- R/zzz.R | 2 build/vignette.rds |binary data/datalist | 1 data/sgpData.rda |binary data/sgpData_LONG.rda |binary data/sgpData_LONG_COVID.rda |only inst/CITATION | 8 inst/NEWS | 11 - inst/doc/SGPdata.html | 304 ++++++------------------------ man/SGPdata-package.Rd | 6 man/sgpData.Rd | 4 man/sgpData_LONG_COVID.Rd |only vignettes/releases/SGPdata-24.0-0.0.Rmd |only vignettes/releases/SGPdata-25.0-0.0.0.Rmd |only 16 files changed, 112 insertions(+), 261 deletions(-)
Title: Base Package for 'Outsider'
Description: Base package for 'outsider' <https://github.com/ropensci/outsider>.
The 'outsider' package and its sister packages enable the installation and
running of external, command-line software within R. This base package is a
key dependency of the user-facing 'outsider' package as it provides the
utilities for interfacing between 'Docker' <https://www.docker.com> and R.
It is intended that end-users of 'outsider' do not directly work with this
base package.
Author: Dom Bennett [aut, cre] (<https://orcid.org/0000-0003-2722-1359>),
Hannes Hettling [ctb] (<https://orcid.org/0000-0003-4144-2238>),
Daniele Silvestro [ctb] (<https://orcid.org/0000-0003-0100-0961>),
Rutger Vos [ctb] (<https://orcid.org/0000-0001-9254-7318>),
Alexandre Antonelli [ctb] (<https://orcid.org/0000-0003-1842-9297>),
Anna Krystalli [rev]
Maintainer: Dom Bennett <dominic.john.bennett@gmail.com>
Diff between outsider.base versions 0.1.3 dated 2020-06-14 and 0.1.4 dated 2021-04-18
DESCRIPTION | 16 +++++++--------- MD5 | 8 ++++---- R/install.R | 2 +- man/log_set.Rd | 2 +- man/outsider-class.Rd | 2 +- 5 files changed, 14 insertions(+), 16 deletions(-)
Title: Basic Functions to Investigate Metabolomics Data Matrices
Description: A set of functions to investigate raw data from (metabol)omics experiments intended to be used on a raw data matrix, i.e. following peak picking and signal deconvolution. Functions can be used to normalize data, detect biomarkers and perform sample classification.
Author: Jan Lisec [aut, cre]
Maintainer: Jan Lisec <jan.lisec@bam.de>
Diff between MetabolomicsBasics versions 1.1 dated 2018-11-12 and 1.2 dated 2021-04-18
DESCRIPTION | 11 ++++---- MD5 | 51 ++++++++++++++++++++++------------------ NAMESPACE | 5 +++ R/ReplaceMissingValues.R | 30 +++++++++++++---------- R/RestrictedPCA.R | 1 R/find_boundaries.R |only R/met-data.R | 6 +++- R/msconvert.R |only R/raw-data.R | 6 +++- R/sam-data.R | 6 +++- R/spectra_format_converter.R |only build |only man/AdjustSymbols.Rd | 3 -- man/CheckForOutliers.Rd | 8 ++++-- man/ClassificationCV.Rd | 13 +++++++--- man/ClassificationHistogram.Rd | 5 +-- man/ClassificationWrapper.Rd | 14 ++++++++-- man/MBoxplot.Rd | 17 ++++++++++--- man/MetaboliteANOVA.Rd | 9 +++++-- man/PlotMetabolitePCA.Rd | 12 +++++++-- man/PlotPValueHist.Rd | 10 ++++++- man/RemoveFactorsByANOVA.Rd | 11 ++++++-- man/ReplaceMissingValues.Rd | 1 man/RestrictedPCA.Rd | 20 +++++++++++---- man/find_boundaries.Rd |only man/met.Rd | 12 +++++++-- man/msconvert.Rd |only man/raw.Rd | 12 +++++++-- man/sam.Rd | 12 +++++++-- man/spectra_format_converter.Rd |only 30 files changed, 192 insertions(+), 83 deletions(-)
More information about MetabolomicsBasics at CRAN
Permanent link
Title: API Client for Fantasy Football League Platforms
Description: Helps access various Fantasy Football APIs by handling
authentication and rate-limiting, forming appropriate calls, and
returning tidy dataframes which can be easily connected to other data
sources.
Author: Tan Ho [aut, cre],
Tony ElHabr [ctb],
Joe Sydlowski [ctb]
Maintainer: Tan Ho <tan@tanho.ca>
Diff between ffscrapr versions 1.4.0 dated 2021-04-13 and 1.4.1 dated 2021-04-18
DESCRIPTION | 7 +- MD5 | 97 ++++++++++++++++---------------- NEWS.md | 30 +++++++-- R/0_helpers.R | 29 +++++++++ R/1_import_nflfastr.R | 4 - R/espn_scoringhistory.R | 8 +- R/flea_scoringhistory.R | 16 ++--- R/mfl_scoringhistory.R | 30 +++++++-- R/mfl_starterpositions.R | 16 ++++- R/sleeper_draftpicks.R | 5 - R/sleeper_scoringhistory.R | 12 ++- R/sysdata.rda |binary R/zzz.R | 36 ++++++----- README.md | 6 - data |only inst/doc/espn_basics.R | 6 - inst/doc/espn_basics.Rmd | 6 - inst/doc/espn_getendpoint.R | 6 - inst/doc/espn_getendpoint.Rmd | 6 - inst/doc/ffscrapr_scoringhistory.R | 4 - inst/doc/ffscrapr_scoringhistory.Rmd | 4 - inst/doc/fleaflicker_basics.R | 6 - inst/doc/fleaflicker_basics.Rmd | 6 - inst/doc/fleaflicker_getendpoint.R | 6 - inst/doc/fleaflicker_getendpoint.Rmd | 6 - inst/doc/mfl_basics.R | 6 - inst/doc/mfl_basics.Rmd | 6 - inst/doc/mfl_basics.html | 12 +-- inst/doc/mfl_getendpoint.R | 6 - inst/doc/mfl_getendpoint.Rmd | 6 - inst/doc/sleeper_basics.R | 6 - inst/doc/sleeper_basics.Rmd | 6 - inst/doc/sleeper_basics.html | 20 +++--- inst/doc/sleeper_getendpoint.R | 6 - inst/doc/sleeper_getendpoint.Rmd | 6 - inst/doc/sleeper_getendpoint.html | 6 - man/ff_scoringhistory.Rd | 10 +-- man/ff_starter_positions.Rd | 2 man/nflfastr_stat_mapping.Rd |only man/release_bullets.Rd |only tests/testthat/setup.R | 6 - tests/testthat/test-ff_scoringhistory.R | 4 - vignettes/espn_basics.Rmd | 6 - vignettes/espn_getendpoint.Rmd | 6 - vignettes/ffscrapr_scoringhistory.Rmd | 4 - vignettes/fleaflicker_basics.Rmd | 6 - vignettes/fleaflicker_getendpoint.Rmd | 6 - vignettes/mfl_basics.Rmd | 6 - vignettes/mfl_getendpoint.Rmd | 6 - vignettes/sleeper_basics.Rmd | 6 - vignettes/sleeper_getendpoint.Rmd | 6 - 51 files changed, 300 insertions(+), 212 deletions(-)
Title: Interface to Download Meteorological (and Hydrological) Datasets
Description: Automatize downloading of meteorological and hydrological data from publicly available repositories:
OGIMET (<http://ogimet.com/index.phtml.en>),
University of Wyoming - atmospheric vertical profiling data (<http://weather.uwyo.edu/upperair/>),
Polish Institute of Meterology and Water Management - National Research Institute (<https://danepubliczne.imgw.pl>),
and National Oceanic & Atmospheric Administration (NOAA).
This package also allows for adding geographical coordinates for each observation.
Author: Bartosz Czernecki [aut, cre] (<https://orcid.org/0000-0001-6496-1386>),
Arkadiusz Głogowski [aut] (<https://orcid.org/0000-0002-7587-8892>),
Jakub Nowosad [aut] (<https://orcid.org/0000-0002-1057-3721>),
IMGW-PIB [ctb] (source of the data)
Maintainer: Bartosz Czernecki <nwp@amu.edu.pl>
Diff between climate versions 0.9.9 dated 2021-01-08 and 1.0.0 dated 2021-04-18
climate-0.9.9/climate/tests/testthat/Rplots.pdf |only climate-1.0.0/climate/DESCRIPTION | 10 climate-1.0.0/climate/MD5 | 90 +-- climate-1.0.0/climate/R/check_locale.R |only climate-1.0.0/climate/R/clean_metadata_hydro.R | 8 climate-1.0.0/climate/R/clean_metadata_meteo.R | 6 climate-1.0.0/climate/R/hydro_imgw.R | 4 climate-1.0.0/climate/R/hydro_imgw_annual.R | 6 climate-1.0.0/climate/R/hydro_imgw_daily.R | 6 climate-1.0.0/climate/R/hydro_imgw_monthly.R | 6 climate-1.0.0/climate/R/hydro_metadata_imgw.R | 4 climate-1.0.0/climate/R/hydro_shortening_imgw.R | 2 climate-1.0.0/climate/R/imgw_hydro_abbrev.R | 2 climate-1.0.0/climate/R/imgw_hydro_stations.R | 2 climate-1.0.0/climate/R/imgw_meteo_abbrev.R | 2 climate-1.0.0/climate/R/imgw_meteo_stations.R | 2 climate-1.0.0/climate/R/meteo_imgw.R | 4 climate-1.0.0/climate/R/meteo_imgw_daily.R | 6 climate-1.0.0/climate/R/meteo_imgw_hourly.R | 6 climate-1.0.0/climate/R/meteo_imgw_monthly.R | 7 climate-1.0.0/climate/R/meteo_metadata_imgw.R | 4 climate-1.0.0/climate/R/meteo_shortening_imgw.R | 2 climate-1.0.0/climate/R/nearest_stations_imgw.R | 4 climate-1.0.0/climate/R/test_url.R | 2 climate-1.0.0/climate/build/vignette.rds |binary climate-1.0.0/climate/inst/doc/getstarted.html | 435 ++++++++++--------- climate-1.0.0/climate/man/clean_metadata_meteo.Rd | 2 climate-1.0.0/climate/man/climate-package.Rd | 4 climate-1.0.0/climate/man/hydro_imgw.Rd | 4 climate-1.0.0/climate/man/hydro_imgw_annual.Rd | 2 climate-1.0.0/climate/man/hydro_imgw_daily.Rd | 2 climate-1.0.0/climate/man/hydro_imgw_monthly.Rd | 2 climate-1.0.0/climate/man/hydro_metadata_imgw.Rd | 2 climate-1.0.0/climate/man/hydro_shortening_imgw.Rd | 2 climate-1.0.0/climate/man/imgw_hydro_abbrev.Rd | 2 climate-1.0.0/climate/man/imgw_hydro_stations.Rd | 2 climate-1.0.0/climate/man/imgw_meteo_abbrev.Rd | 2 climate-1.0.0/climate/man/imgw_meteo_stations.Rd | 2 climate-1.0.0/climate/man/meteo_imgw.Rd | 4 climate-1.0.0/climate/man/meteo_imgw_daily.Rd | 2 climate-1.0.0/climate/man/meteo_imgw_hourly.Rd | 2 climate-1.0.0/climate/man/meteo_imgw_monthly.Rd | 2 climate-1.0.0/climate/man/meteo_shortening_imgw.Rd | 2 climate-1.0.0/climate/man/nearest_stations_imgw.Rd | 2 climate-1.0.0/climate/man/nearest_stations_nooa.Rd | 2 climate-1.0.0/climate/man/nearest_stations_ogimet.Rd | 2 climate-1.0.0/climate/man/test_url.Rd | 2 47 files changed, 357 insertions(+), 311 deletions(-)
Title: Spatial Seemingly Unrelated Regression Models
Description: A collection of functions to test and estimate Seemingly
Unrelated Regression (usually called SUR) models, with spatial structure, by maximum
likelihood and three-stage least squares. The package estimates the
most common spatial specifications, that is, SUR with Spatial Lag of
X regressors (called SUR-SLX), SUR with Spatial Lag Model (called SUR-SLM),
SUR with Spatial Error Model (called SUR-SEM), SUR with Spatial Durbin Model (called SUR-SDM),
SUR with Spatial Durbin Error Model (called SUR-SDEM),
SUR with Spatial Autoregressive terms and Spatial Autoregressive
Disturbances (called SUR-SARAR), SUR-SARAR with Spatial Lag of X
regressors (called SUR-GNM) and SUR with Spatially Independent Model (called SUR-SIM).
The methodology of these models can be found in next references
Mur, J., Lopez, F., and Herrera, M. (2010) <doi:10.1080/17421772.2010.516443>
Lopez, F.A., Mur, J., and Angulo, A. (2014) <doi:10.1007/s00168-014-0624-2>.
Author: Ana Angulo [aut],
Fernando A Lopez [aut],
Roman Minguez [aut, cre],
Jesus Mur [aut]
Maintainer: Roman Minguez <roman.minguez@uclm.es>
Diff between spsur versions 1.0.1.7 dated 2021-04-09 and 1.0.1.8 dated 2021-04-18
DESCRIPTION | 8 MD5 | 55 NAMESPACE | 2 R/dgp_spSUR.R | 4 R/impactspsur.R | 166 - R/lmtestspsur.R | 10 R/lr_betas.R | 1 R/spSUR-package.R | 5 R/spsur3sls.R | 18 R/spsurml.R | 55 R/spsurtime.R | 9 R/wald_betas.R | 5 inst/doc/Vignette_User_Guide.Rmd | 4694 +++++++++++++++++++------------------- inst/doc/Vignette_User_Guide.html | 1 inst/doc/spsur-vs-spatialreg.Rmd | 1621 ++++++------- inst/doc/spsur-vs-spatialreg.html | 17 man/dgp_spsur.Rd | 4 man/impactspsur.Rd | 5 man/lmtestspsur.Rd | 10 man/lr_betas.Rd | 1 man/spsur-package.Rd | 3 man/spsur3sls.Rd | 8 man/spsurml.Rd | 16 man/spsurtime.Rd | 9 man/wald_betas.Rd | 5 vignettes/Vignette_User_Guide.Rmd | 4694 +++++++++++++++++++------------------- vignettes/custom.css |only vignettes/rsconnect |only vignettes/spsur-vs-spatialreg.Rmd | 1621 ++++++------- 29 files changed, 6514 insertions(+), 6533 deletions(-)
Title: Rank Aggregation with Partition Mallows Model
Description: Rank aggregation aims to achieve a better ranking list given multiple observations. 'PAMA' implements Partition-Mallows model for rank aggregation where the rankers' quality are different. Both Bayesian inference and Maximum likelihood estimation (MLE) are provided. It can handle partial list as well. When covariates information is available, this package can make inference by incorporating the covariate information. More information can be found in the paper "Integrated Partition-Mallows Model and Its Inference for Rank Aggregation".
Author: Wanchuang Zhu [cre, aut]
Maintainer: Wanchuang Zhu <andy.chou.sub@gmail.com>
Diff between PAMA versions 1.0.0 dated 2021-04-14 and 1.0.1 dated 2021-04-18
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- R/NBANFL.R | 9 ++++++++- R/PAMA.B.R | 2 +- R/PAMA.Cov.R | 7 ++++--- R/PAMA.F.R | 8 ++++---- R/PAMA.PL.R | 2 +- man/NBANFL.Rd | 9 ++++++++- man/PAMA.B.Rd | 2 +- man/PAMA.Cov.Rd | 7 ++++--- man/PAMA.F.Rd | 8 ++++---- man/PAMA.PL.Rd | 2 +- 12 files changed, 51 insertions(+), 35 deletions(-)
More information about latticeDensity at CRAN
Permanent link
Title: Basic Finance; NPV/IRR/Annuities/Bond-Pricing; Black Scholes
Description: Implements the basic financial analysis
functions similar to (but not identical to) what
is available in most spreadsheet software. This
includes finding the IRR and NPV of regularly
spaced cash flows and annuities. Bond pricing and
YTM calculations are included. In addition, Black
Scholes option pricing and Greeks are also
provided.
Author: Jayanth Varma [aut, cre]
Maintainer: Jayanth Varma <jrvarma@iima.ac.in>
Diff between jrvFinance versions 1.4.1 dated 2019-03-15 and 1.4.2 dated 2021-04-18
DESCRIPTION | 15 - MD5 | 30 +-- NEWS.md | 4 R/solve-irr.R | 2 build/vignette.rds |binary inst/doc/jrvFinance-demo.R | 92 +++++----- inst/doc/jrvFinance-demo.html | 385 +++++++++++------------------------------- man/GenBSImplied.Rd | 14 + man/annuity.Rd | 88 ++++++--- man/bonds.Rd | 102 ++++++++--- man/daycount.Rd | 10 - man/duration.Rd | 13 + man/irr.Rd | 14 + man/irr.solve.Rd | 12 - man/newton.raphson.root.Rd | 13 + man/npv.Rd | 12 - 16 files changed, 386 insertions(+), 420 deletions(-)
Title: Manual Tours, Manual Control of Dynamic Projections of Numeric
Multivariate Data
Description: Data visualization tours animates linear projection
of multivariate data as its basis (ie. orientation) changes. The 'spinifex'
packages generates paths for manual tours by manipulating the contribution of
a single variable at a time ['Cook' & 'Buja' (1997) <doi:10.2307/1390747>].
Other types of tours, such as grand (random walk) and guided (optimizing some
objective function) are available in the
'tourr' package ['Wickham' 'et' 'al.' (2011) <doi:10.18637/jss.v040.i02>].
'spinifex' builds on 'tourr' and can render tours with 'gganimate' and
'plotly' graphics, and allows for exporting as an .html widget and as an .gif,
respectively. This work is fully discussed at ['Spyrison' & 'Cook' (2020)
<doi:10.32614/RJ-2020-027>.
Author: Nicholas Spyrison [aut, cre],
Dianne Cook [aut, ths]
Maintainer: Nicholas Spyrison <spyrison@gmail.com>
Diff between spinifex versions 0.2.7 dated 2020-11-18 and 0.2.8 dated 2021-04-18
spinifex-0.2.7/spinifex/man/manip_var_guided.Rd |only spinifex-0.2.7/spinifex/man/manip_var_pca.Rd |only spinifex-0.2.7/spinifex/man/scale_10.Rd |only spinifex-0.2.8/spinifex/DESCRIPTION | 12 spinifex-0.2.8/spinifex/MD5 | 93 +- spinifex-0.2.8/spinifex/NAMESPACE | 10 spinifex-0.2.8/spinifex/NEWS.md | 29 spinifex-0.2.8/spinifex/R/0_util.r | 442 ++++++++---- spinifex-0.2.8/spinifex/R/1_manual_tour.r | 113 +-- spinifex-0.2.8/spinifex/R/2_render.r | 122 +-- spinifex-0.2.8/spinifex/R/3_visualize.r | 195 ++--- spinifex-0.2.8/spinifex/R/8_run_app.r | 6 spinifex-0.2.8/spinifex/R/9_data.r | 4 spinifex-0.2.8/spinifex/R/9_spinifex-depricated.r | 16 spinifex-0.2.8/spinifex/README.md | 2 spinifex-0.2.8/spinifex/data/BreastCancer.rda |binary spinifex-0.2.8/spinifex/inst/doc/spinifex.R | 37 - spinifex-0.2.8/spinifex/inst/doc/spinifex.Rmd | 37 - spinifex-0.2.8/spinifex/inst/doc/spinifex.html | 308 +------- spinifex-0.2.8/spinifex/inst/shiny_apps/intro/app.R | 45 - spinifex-0.2.8/spinifex/inst/shiny_apps/intro/ui.R | 2 spinifex-0.2.8/spinifex/man/BreastCancer.Rd | 136 +-- spinifex-0.2.8/spinifex/man/array2df.Rd | 2 spinifex-0.2.8/spinifex/man/as_history_array.Rd |only spinifex-0.2.8/spinifex/man/basis_guided.Rd | 29 spinifex-0.2.8/spinifex/man/basis_half_circle.Rd |only spinifex-0.2.8/spinifex/man/basis_odp.Rd |only spinifex-0.2.8/spinifex/man/basis_olda.Rd |only spinifex-0.2.8/spinifex/man/basis_onpp.Rd |only spinifex-0.2.8/spinifex/man/basis_pca.Rd | 22 spinifex-0.2.8/spinifex/man/create_manip_space.Rd | 2 spinifex-0.2.8/spinifex/man/figures/spinifex_hex.png |binary spinifex-0.2.8/spinifex/man/is_orthonormal.Rd | 7 spinifex-0.2.8/spinifex/man/manip_var_of.Rd |only spinifex-0.2.8/spinifex/man/manual_tour.Rd | 2 spinifex-0.2.8/spinifex/man/play_manual_tour.Rd | 12 spinifex-0.2.8/spinifex/man/play_tour_path.Rd | 13 spinifex-0.2.8/spinifex/man/render_.Rd | 16 spinifex-0.2.8/spinifex/man/render_gganimate.Rd | 12 spinifex-0.2.8/spinifex/man/render_plotly.Rd | 31 spinifex-0.2.8/spinifex/man/rotate_manip_space.Rd | 2 spinifex-0.2.8/spinifex/man/scale_axes.Rd | 5 spinifex-0.2.8/spinifex/man/scale_sd.Rd | 9 spinifex-0.2.8/spinifex/man/spinifex-deprecated.Rd | 58 - spinifex-0.2.8/spinifex/man/theme_spinifex.Rd | 4 spinifex-0.2.8/spinifex/man/view_frame.Rd | 9 spinifex-0.2.8/spinifex/man/view_manip_space.Rd | 15 spinifex-0.2.8/spinifex/tests/testthat/test-0_util.R | 25 spinifex-0.2.8/spinifex/tests/testthat/test-1_manual_tour.R | 2 spinifex-0.2.8/spinifex/tests/testthat/test-2_render.R | 9 spinifex-0.2.8/spinifex/tests/testthat/test-3_visualize.r | 2 spinifex-0.2.8/spinifex/vignettes/spinifex.Rmd | 37 - 52 files changed, 923 insertions(+), 1011 deletions(-)
Title: Memory-Efficient, Visualize-Enhanced, Parallel-Accelerated GWAS
Tool
Description: A memory-efficient, visualize-enhanced, parallel-accelerated Genome-Wide Association Study (GWAS) tool. It can
(1) effectively process large data,
(2) rapidly evaluate population structure,
(3) efficiently estimate variance components several algorithms,
(4) implement parallel-accelerated association tests of markers three methods,
(5) globally efficient design on GWAS process computing,
(6) enhance visualization of related information.
'rMVP' contains three models GLM (Alkes Price (2006) <DOI:10.1038/ng1847>), MLM (Jianming Yu (2006) <DOI:10.1038/ng1702>)
and FarmCPU (Xiaolei Liu (2016) <doi:10.1371/journal.pgen.1005767>); variance components estimation methods EMMAX
(Hyunmin Kang (2008) <DOI:10.1534/genetics.107.080101>;), FaSTLMM (method: Christoph Lippert (2011) <DOI:10.1038/nmeth.1681>,
R implementation from 'GAPIT2': You Tang and Xiaolei Liu (2016) <DOI:10.1371/journal.pone.0107684> and
'SUPER': Qishan Wang and Feng Tian (2014) <DOI:10.1371/journal.pone.0107684>), and HE regression
(Xiang Zhou (2017) <DOI:10.1214/17-AOAS1052>).
Author: Lilin Yin [aut],
Haohao Zhang [aut],
Zhenshuang Tang [aut],
Jingya Xu [aut],
Dong Yin [aut],
Zhiwu Zhang [aut],
Xiaohui Yuan [aut],
Mengjin Zhu [aut],
Shuhong Zhao [aut],
Xinyun Li [aut],
Qishan Wang [ctb],
Feng Tian [ctb],
Hyunmin Kang [ctb],
Xiang Zhou [ctb],
Xiaolei Liu [cre, aut, cph]
Maintainer: Xiaolei Liu <xiaoleiliu@mail.hzau.edu.cn>
Diff between rMVP versions 1.0.5 dated 2021-03-02 and 1.0.6 dated 2021-04-18
DESCRIPTION | 8 - MD5 | 9 - R/MVP.K.VanRaden.r | 356 +++++++++++++++++++++++++++++------------------------ R/MVP.r | 2 R/RcppExports.R | 142 ++++++++++----------- man/MVP.calk.Rd |only 6 files changed, 277 insertions(+), 240 deletions(-)
Title: R Interface to the 'Deutsche Nationalbibliothek (German National
Library) API'
Description: A wrapper for the 'Deutsche Nationalbibliothek (German National
Library) API', available at <https://www.dnb.de>. The German National Library is
the German central archival library, collecting, archiving, bibliographically
classifying all German and German-language publications, foreign
publications about Germany, translations of German works, and the works of
German-speaking emigrants published abroad between 1933 and 1945.
Author: Christian Graul [aut, cre]
Maintainer: Christian Graul <christian.graul@gmail.com>
Diff between rdnb versions 0.1-3 dated 2019-04-10 and 0.1-4 dated 2021-04-18
rdnb-0.1-3/rdnb/man/save_token.Rd |only rdnb-0.1-4/rdnb/DESCRIPTION | 17 +++----- rdnb-0.1-4/rdnb/MD5 | 29 ++++++-------- rdnb-0.1-4/rdnb/NAMESPACE | 1 rdnb-0.1-4/rdnb/R/gets.R | 4 - rdnb-0.1-4/rdnb/R/rdnb.R | 4 - rdnb-0.1-4/rdnb/R/utils.R | 58 ---------------------------- rdnb-0.1-4/rdnb/build/vignette.rds |binary rdnb-0.1-4/rdnb/inst/CITATION | 6 +- rdnb-0.1-4/rdnb/inst/NEWS | 6 ++ rdnb-0.1-4/rdnb/inst/doc/rdnb_vignette.Rmd | 21 ++-------- rdnb-0.1-4/rdnb/inst/doc/rdnb_vignette.html | 23 +++-------- rdnb-0.1-4/rdnb/man/dnb_advanced.Rd | 3 - rdnb-0.1-4/rdnb/man/dnb_search.Rd | 19 ++++++--- rdnb-0.1-4/rdnb/man/rdnb.Rd | 5 -- rdnb-0.1-4/rdnb/vignettes/rdnb_vignette.Rmd | 21 ++-------- 16 files changed, 68 insertions(+), 149 deletions(-)
Title: An Interactive Detector for Spatial Associations
Description: Method of interactive detector for spatial associations (IDSA)
as described in Yongze Song (2021) <doi:10.1080/13658816.2021.1882680>.
IDSA is used to quantify the power of interactive determinant (PID)
between a spatial response variable and explanatory variables.
IDSA is developed based on methods of spatial heterogeneity.
Author: Yongze Song [aut, cre] (<https://orcid.org/0000-0003-3420-9622>)
Maintainer: Yongze Song <yongze.song@postgrad.curtin.edu.au>
Diff between IDSA versions 1.2 dated 2021-01-28 and 2.1 dated 2021-04-18
DESCRIPTION | 15 +++++++++------ INDEX | 53 ++++++++++++++++++++++------------------------------- MD5 | 16 ++++++++++++++-- R/zzz.R |only build |only inst |only vignettes |only 7 files changed, 45 insertions(+), 39 deletions(-)
Title: Data Sets, Functions and Examples from the Book: "Modern
Industrial Statistics" by Kenett, Zacks and Amberti
Description: Provide all the data sets and statistical analysis applications used in "Modern Industrial Statistics: with applications in R, MINITAB and JMP" by R.S. Kenett and S. Zacks with contributions by D. Amberti, John Wiley and Sons, 2021, which is a third revised and expanded revision of "Modern Industrial Statistics: Design and Control of Quality and Reliability", R. Kenett and S. Zacks, Duxbury/Wadsworth Publishing, 1998.
Author: Daniele Amberti
Maintainer: Daniele Amberti <daniele.amberti@gmail.com>
Diff between mistat versions 1.0-5 dated 2018-01-08 and 2.0.3 dated 2021-04-18
mistat-1.0-5/mistat/inst/scripts/ch02.R |only mistat-1.0-5/mistat/inst/scripts/ch03.R |only mistat-1.0-5/mistat/inst/scripts/ch04.R |only mistat-1.0-5/mistat/inst/scripts/ch05.R |only mistat-1.0-5/mistat/inst/scripts/ch06.R |only mistat-1.0-5/mistat/inst/scripts/ch07.R |only mistat-1.0-5/mistat/inst/scripts/ch08.R |only mistat-1.0-5/mistat/inst/scripts/ch09.R |only mistat-1.0-5/mistat/inst/scripts/ch10.R |only mistat-1.0-5/mistat/inst/scripts/ch11.R |only mistat-1.0-5/mistat/inst/scripts/ch12.R |only mistat-1.0-5/mistat/inst/scripts/ch13.R |only mistat-1.0-5/mistat/inst/scripts/ch14.R |only mistat-1.0-5/mistat/inst/scripts/ch15.R |only mistat-2.0.3/mistat/DESCRIPTION | 15 mistat-2.0.3/mistat/MD5 | 83 ++ mistat-2.0.3/mistat/NAMESPACE | 17 mistat-2.0.3/mistat/R/ARMA.R |only mistat-2.0.3/mistat/R/dlmLg.R |only mistat-2.0.3/mistat/R/dynOAB.R |only mistat-2.0.3/mistat/R/dynOAB2.R |only mistat-2.0.3/mistat/R/masPred1.R |only mistat-2.0.3/mistat/R/nrwm.R |only mistat-2.0.3/mistat/R/pred1.R |only mistat-2.0.3/mistat/R/predARMA.R |only mistat-2.0.3/mistat/R/predPoly.R |only mistat-2.0.3/mistat/R/simOAB.R |only mistat-2.0.3/mistat/R/toeplitz.R |only mistat-2.0.3/mistat/README.md | 2 mistat-2.0.3/mistat/data/ABC.rda |only mistat-2.0.3/mistat/data/DISSOLUTION.rda |only mistat-2.0.3/mistat/data/DOW1941.rda |binary mistat-2.0.3/mistat/data/FOOD.rda |only mistat-2.0.3/mistat/data/SENSORS.rda |only mistat-2.0.3/mistat/data/SYSTEMFAILURE.rda |only mistat-2.0.3/mistat/data/SeasCom.rda |only mistat-2.0.3/mistat/inst/csvFiles/ABC.csv |only mistat-2.0.3/mistat/inst/csvFiles/DISSOLUTION.csv |only mistat-2.0.3/mistat/inst/csvFiles/DOW1941.csv | 606 ++++++++++---------- mistat-2.0.3/mistat/inst/csvFiles/FOOD.csv |only mistat-2.0.3/mistat/inst/csvFiles/SENSORS.csv |only mistat-2.0.3/mistat/inst/csvFiles/SYSTEMFAILURE.csv |only mistat-2.0.3/mistat/inst/csvFiles/SeasCom.csv |only mistat-2.0.3/mistat/inst/scripts/ch002.R |only mistat-2.0.3/mistat/inst/scripts/ch003.R |only mistat-2.0.3/mistat/inst/scripts/ch004.R |only mistat-2.0.3/mistat/inst/scripts/ch005.R |only mistat-2.0.3/mistat/inst/scripts/ch006.R |only mistat-2.0.3/mistat/inst/scripts/ch007.R |only mistat-2.0.3/mistat/inst/scripts/ch008.R |only mistat-2.0.3/mistat/inst/scripts/ch010.R |only mistat-2.0.3/mistat/inst/scripts/ch011.R |only mistat-2.0.3/mistat/inst/scripts/ch012.R |only mistat-2.0.3/mistat/inst/scripts/ch013.R |only mistat-2.0.3/mistat/inst/scripts/ch014.R |only mistat-2.0.3/mistat/inst/scripts/ch015.R |only mistat-2.0.3/mistat/inst/scripts/ch016.R |only mistat-2.0.3/mistat/inst/scripts/ch017.R |only mistat-2.0.3/mistat/inst/scripts/ch018.R |only mistat-2.0.3/mistat/man/ABC.Rd |only mistat-2.0.3/mistat/man/ARMA.Rd |only mistat-2.0.3/mistat/man/DISSOLUTION.Rd |only mistat-2.0.3/mistat/man/DOW1941.Rd | 22 mistat-2.0.3/mistat/man/FOOD.Rd |only mistat-2.0.3/mistat/man/LATHYPPISTON.Rd | 12 mistat-2.0.3/mistat/man/SENSORS.Rd |only mistat-2.0.3/mistat/man/SYSTEMFAILURE.Rd |only mistat-2.0.3/mistat/man/SeasCom.Rd |only mistat-2.0.3/mistat/man/dlmLg.Rd |only mistat-2.0.3/mistat/man/dynOAB.Rd |only mistat-2.0.3/mistat/man/masPred1.Rd |only mistat-2.0.3/mistat/man/nrwm.Rd |only mistat-2.0.3/mistat/man/pred1.Rd |only mistat-2.0.3/mistat/man/predARMA.Rd |only mistat-2.0.3/mistat/man/predPoly.Rd |only mistat-2.0.3/mistat/man/simOAB.Rd |only mistat-2.0.3/mistat/man/toeplitz.Rd |only 77 files changed, 409 insertions(+), 348 deletions(-)
Title: Variable Metric Nonlinear Function Minimization
Description: Variable metric nonlinear function minimization with bounds constraints.
Author: John C. Nash [aut, cre]
Maintainer: John C. Nash <nashjc@uottawa.ca>
Diff between Rvmmin versions 2018-4.17 dated 2018-04-17 and 2018-4.17.1 dated 2021-04-18
Rvmmin-2018-4.17.1/Rvmmin/DESCRIPTION | 8 ++++---- Rvmmin-2018-4.17.1/Rvmmin/MD5 | 9 ++++----- Rvmmin-2018-4.17.1/Rvmmin/build/vignette.rds |binary Rvmmin-2018-4.17.1/Rvmmin/inst/doc/Rvmmin.R | 14 +++++++------- Rvmmin-2018-4.17.1/Rvmmin/inst/doc/Rvmmin.html |only Rvmmin-2018-4.17/Rvmmin/inst/doc/Rvmmin.pdf |only Rvmmin-2018-4.17/Rvmmin/vignettes/Rvmmin.html |only 7 files changed, 15 insertions(+), 16 deletions(-)
Title: Robust Adaptive Metropolis Algorithm
Description: Function for adapting the shape of the random walk Metropolis proposal
as specified by robust adaptive Metropolis algorithm by Vihola (2012) <DOI:10.1007/s11222-011-9269-5>.
The package also includes fast functions for rank-one Cholesky update and downdate.
These functions can be used directly from R or the corresponding C++ header files
can be easily linked to other R packages.
Author: Jouni Helske [aut, cre] (<https://orcid.org/0000-0001-7130-793X>)
Maintainer: Jouni Helske <jouni.helske@iki.fi>
Diff between ramcmc versions 0.1.0-1.1 dated 2020-10-14 and 0.1.1 dated 2021-04-18
DESCRIPTION | 22 - MD5 | 22 - R/update.R | 266 ++++++------- build/vignette.rds |binary inst/CITATION | 48 +- inst/doc/ramcmc.R | 118 +++--- inst/doc/ramcmc.Rmd | 242 ++++++------ inst/doc/ramcmc.html | 900 +++++++++++++++++----------------------------- tests/test_all.R | 4 tests/testthat/test-all.R | 162 ++++---- vignettes/ramcmc.Rmd | 242 ++++++------ vignettes/ramcmc.bib | 110 ++--- 12 files changed, 972 insertions(+), 1164 deletions(-)
Title: Run Code 'With' Temporarily Modified Global State
Description: A set of functions to run code 'with' safely and
temporarily modified global state. Many of these functions were
originally a part of the 'devtools' package, this provides a simple
package with limited dependencies to provide access to these
functions.
Author: Jim Hester [aut, cre],
Kirill Müller [aut],
Kevin Ushey [aut],
Hadley Wickham [aut],
Winston Chang [aut],
Jennifer Bryan [ctb],
Richard Cotton [ctb],
RStudio [cph]
Maintainer: Jim Hester <jim.hester@rstudio.com>
Diff between withr versions 2.4.1 dated 2021-01-26 and 2.4.2 dated 2021-04-18
DESCRIPTION | 7 MD5 | 40 +- NEWS.md | 14 R/env.R | 3 R/local_.R | 2 R/namespace.R | 7 R/options.R | 2 R/seed.R | 33 + R/tempfile.R | 22 - R/timezone.R | 29 - R/utils.R | 7 build/vignette.rds |binary inst/doc/changing-and-restoring-state.html | 566 +++++++++-------------------- man/with_seed.Rd | 22 + man/with_tempfile.Rd | 8 man/withr.Rd | 2 tests/testthat/test-devices.R | 2 tests/testthat/test-env.R |only tests/testthat/test-local.R | 35 - tests/testthat/test-options.R |only tests/testthat/test-seed.R | 44 ++ tests/testthat/test-with.R | 31 - 22 files changed, 369 insertions(+), 507 deletions(-)
Title: Dimension Reduction and Estimation Methods
Description: We provide linear and nonlinear dimension reduction techniques.
Intrinsic dimension estimation methods for exploratory analysis are also provided.
For more details on the package, see the paper by You (2020) <arXiv:2005.11107>.
Author: Kisung You [aut, cre] (<https://orcid.org/0000-0002-8584-459X>),
Changhee Suh [ctb]
Maintainer: Kisung You <kyoustat@gmail.com>
Diff between Rdimtools versions 1.0.4 dated 2020-09-07 and 1.0.6 dated 2021-04-18
Rdimtools-1.0.4/Rdimtools/man/package-Rdimtools.Rd |only Rdimtools-1.0.6/Rdimtools/DESCRIPTION | 11 Rdimtools-1.0.6/Rdimtools/MD5 | 46 Rdimtools-1.0.6/Rdimtools/NAMESPACE | 4 Rdimtools-1.0.6/Rdimtools/NEWS.md | 11 Rdimtools-1.0.6/Rdimtools/R/RcppExports.R | 12 Rdimtools-1.0.6/Rdimtools/R/Rdimtools-package.R | 7 Rdimtools-1.0.6/Rdimtools/R/data_iris.R |only Rdimtools-1.0.6/Rdimtools/R/feature_LSLS.R | 4 Rdimtools-1.0.6/Rdimtools/R/feature_UGFS.R | 3 Rdimtools-1.0.6/Rdimtools/R/nonlinear_SAMMON.R | 17 Rdimtools-1.0.6/Rdimtools/R/ver2_nonlinear_MMDS.R |only Rdimtools-1.0.6/Rdimtools/R/ver2_nonlinear_PHATE.R |only Rdimtools-1.0.6/Rdimtools/R/zzz.R | 4 Rdimtools-1.0.6/Rdimtools/README.md | 8 Rdimtools-1.0.6/Rdimtools/build/partial.rdb |binary Rdimtools-1.0.6/Rdimtools/build/vignette.rds |binary Rdimtools-1.0.6/Rdimtools/data |only Rdimtools-1.0.6/Rdimtools/inst/REFERENCES.bib | 3577 +++++++++---------- Rdimtools-1.0.6/Rdimtools/man/iris.Rd |only Rdimtools-1.0.6/Rdimtools/man/nonlinear_MMDS.Rd |only Rdimtools-1.0.6/Rdimtools/man/nonlinear_PHATE.Rd |only Rdimtools-1.0.6/Rdimtools/man/nonlinear_SAMMON.Rd | 2 Rdimtools-1.0.6/Rdimtools/src/RcppExports.cpp | 49 Rdimtools-1.0.6/Rdimtools/src/methods_nonlinear.cpp | 82 Rdimtools-1.0.6/Rdimtools/src/methods_nonlinear.h | 3 Rdimtools-1.0.6/Rdimtools/src/ver2_nonlinear.cpp | 324 + Rdimtools-1.0.6/Rdimtools/vignettes/quick-start.html | 314 - 28 files changed, 2237 insertions(+), 2241 deletions(-)
Title: Mixed GAM Computation Vehicle with Automatic Smoothness
Estimation
Description: Generalized additive (mixed) models, some of their extensions and
other generalized ridge regression with multiple smoothing
parameter estimation by (Restricted) Marginal Likelihood,
Generalized Cross Validation and similar, or using iterated
nested Laplace approximation for fully Bayesian inference. See
Wood (2017) <doi:10.1201/9781315370279> for an overview.
Includes a gam() function, a wide variety of smoothers, 'JAGS'
support and distributions beyond the exponential family.
Author: Simon Wood <simon.wood@r-project.org>
Maintainer: Simon Wood <simon.wood@r-project.org>
Diff between mgcv versions 1.8-34 dated 2021-02-16 and 1.8-35 dated 2021-04-18
ChangeLog | 21 DESCRIPTION | 6 MD5 | 52 - R/fast-REML.r | 11 R/gam.fit3.r | 3 R/gamlss.r | 16 R/smooth.r | 21 build/partial.rdb |binary inst/po/en@quot/LC_MESSAGES/R-mgcv.mo |binary inst/po/en@quot/LC_MESSAGES/mgcv.mo |binary inst/po/fr/LC_MESSAGES/R-mgcv.mo |binary inst/po/fr/LC_MESSAGES/mgcv.mo |binary inst/po/it |only man/gammals.Rd | 2 man/gevlss.Rd | 2 man/gumbls.Rd | 2 man/mgcv-parallel.Rd | 2 man/s.Rd | 3 man/shash.Rd | 7 man/smooth.construct.bs.smooth.spec.Rd | 1 man/smooth.construct.ps.smooth.spec.Rd | 4 po/R-de.po | 2 po/R-fr.po | 1110 +++++++++++++-------------------- po/R-it.po |only po/R-mgcv.pot | 4 po/fr.po | 39 - po/it.po |only po/mgcv.pot | 4 28 files changed, 588 insertions(+), 724 deletions(-)
Title: Tools for Two-Dimensional Monte-Carlo Simulations
Description: A complete framework to build and study Two-Dimensional Monte-Carlo simulations, aka Second-Order Monte-Carlo simulations. Also includes various distributions (pert, triangular, Bernoulli, empirical discrete and continuous).
Author: Regis Pouillot [aut, cre],
Marie-Laure Delignette-Muller [ctb],
Jean-Baptiste Denis [ctb]
Maintainer: Regis Pouillot <rpouillot@yahoo.fr>
Diff between mc2d versions 0.1-18 dated 2017-03-06 and 0.1-19 dated 2021-04-18
DESCRIPTION | 18 +++++++++--------- MD5 | 26 +++++++++++++------------- R/empiricalC.R | 6 +++--- R/extractvar.R | 2 +- R/mccontrol.R | 22 ++++++++++++---------- R/mcstoc.R | 3 ++- build/vignette.rds |binary data/ec.rda |binary inst/doc/docmcEnglish.R | 1 - inst/doc/docmcEnglish.pdf |binary inst/doc/mc2dLmEnglish.R | 1 - inst/doc/mc2dLmEnglish.pdf |binary man/ec.Rd | 2 +- man/total.Rd | 2 +- 14 files changed, 42 insertions(+), 41 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-01 1.0.0
Title: Simple Data Frames
Description: Provides a 'tbl_df' class (the 'tibble') that
provides stricter checking and better formatting than the traditional
data frame.
Author: Kirill Müller [aut, cre],
Hadley Wickham [aut],
Romain Francois [ctb],
Jennifer Bryan [ctb],
RStudio [cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between tibble versions 3.1.0 dated 2021-02-25 and 3.1.1 dated 2021-04-18
DESCRIPTION | 15 +- MD5 | 49 ++++---- NAMESPACE | 4 NEWS.md | 22 ++- R/new.R | 4 R/pillar.R |only R/print.R | 10 + R/subsetting.R | 2 R/tribble.R | 18 +++ build/vignette.rds |binary inst/doc/formats.html | 31 +++-- inst/doc/invariants.html | 63 ++++++---- inst/doc/tibble.R | 14 ++ inst/doc/tibble.Rmd | 45 ++++++- inst/doc/tibble.html | 207 ++++++++++++++++++++++-------------- inst/doc/types.html | 102 ++++++++++------- man/formatting.Rd | 12 +- man/new_tibble.Rd | 4 man/reexports.Rd | 7 - man/subsetting.Rd | 2 man/tibble-package.Rd | 10 + man/tribble.Rd | 12 ++ tests/testthat/_snaps/subsetting.md | 2 tests/testthat/test-str.R | 2 tests/testthat/test-tribble.R | 11 + vignettes/tibble.Rmd | 45 ++++++- 26 files changed, 454 insertions(+), 239 deletions(-)
Title: Handy File and String Manipulation
Description: This started out as a package for file and string
manipulation. Since then, the 'fs' and 'strex' packages emerged,
offering functionality previously given by this package (but it's done
better in these new ones). Those packages have hence almost pushed
'filesstrings' into extinction. However, it still has a small number
of unique, handy file manipulation functions which can be seen in the
vignette. One example is a function to remove spaces from all file
names in a directory.
Author: Rory Nolan [aut, cre, cph] (<https://orcid.org/0000-0002-5239-4043>),
Sergi Padilla-Parra [ths] (<https://orcid.org/0000-0002-8010-9481>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between filesstrings versions 3.2.1 dated 2020-10-18 and 3.2.2 dated 2021-04-18
DESCRIPTION | 11 +++---- MD5 | 10 +++--- NEWS.md | 7 ++++ README.md | 2 - build/partial.rdb |binary inst/doc/files.html | 75 +++++++--------------------------------------------- 6 files changed, 28 insertions(+), 77 deletions(-)
Title: Cross-Validated Covariance Matrix Estimation
Description: An efficient cross-validated approach for covariance matrix
estimation, particularly useful in high-dimensional settings. This
method relies upon the theory of loss-based estimator selection to
identify the optimal estimator of the covariance matrix from among a
prespecified set of candidates.
Author: Philippe Boileau [aut, cre, cph]
(<https://orcid.org/0000-0002-4850-2507>),
Nima Hejazi [aut] (<https://orcid.org/0000-0002-7127-2789>),
Brian Collica [aut],
Jamarcus Liu [ctb],
Mark van der Laan [ctb, ths] (<https://orcid.org/0000-0003-1432-5511>),
Sandrine Dudoit [ctb, ths] (<https://orcid.org/0000-0002-6069-8629>)
Maintainer: Philippe Boileau <philippe_boileau@berkeley.edu>
Diff between cvCovEst versions 0.3.4 dated 2021-03-06 and 0.3.5 dated 2021-04-18
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 3 +++ build/partial.rdb |binary inst/doc/using_cvCovEst.html | 15 +++++++++++---- 5 files changed, 22 insertions(+), 12 deletions(-)
Title: Automatic Generation of Interactive Visualizations for
Statistical Results
Description: Functionalities to automatically generate interactive visualizations for
statistical results supported by 'ggfortify', such as time series, PCA,
clustering and survival analysis, with 'plotly.js' <https://plotly.com/> and
'ggplot2' style. The generated visualizations can also be easily extended
using 'ggplot2' and 'plotly' syntax while staying interactive.
Author: Yuan Tang [aut, cre] (<https://orcid.org/0000-0001-5243-233X>)
Maintainer: Yuan Tang <terrytangyuan@gmail.com>
Diff between autoplotly versions 0.1.3 dated 2021-04-16 and 0.1.4 dated 2021-04-18
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- NEWS.md | 5 +++++ 3 files changed, 11 insertions(+), 6 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-10 0.1.5
2021-01-18 0.1.2
Title: Wavelet-Based Enhanced FDR for Detecting Signals from Complete
or Incomplete Spatially Aggregated Data
Description: Enhanced False Discovery Rate (EFDR) is a tool to detect anomalies
in an image. The image is first transformed into the wavelet domain in
order to decorrelate any noise components, following which the coefficients
at each resolution are standardised. Statistical tests (in a multiple
hypothesis testing setting) are then carried out to find the anomalies. The
power of EFDR exceeds that of standard FDR, which would carry out tests on
every wavelet coefficient: EFDR choose which wavelets to test based on a
criterion described in Shen et al. (2002). The package also provides
elementary tools to interpolate spatially irregular data onto a grid of the
required size. The work is based on Shen, X., Huang, H.-C., and Cressie, N.
'Nonparametric hypothesis testing for a spatial signal.' Journal of the
American Statistical Association 97.460 (2002): 1122-1140.
Author: Andrew Zammit-Mangion [aut, cre],
Hsin-Cheng Huang [aut]
Maintainer: Andrew Zammit-Mangion <andrewzm@gmail.com>
Diff between EFDR versions 1.0 dated 2019-05-20 and 1.2 dated 2021-04-18
DESCRIPTION | 18 ++-- MD5 | 30 +++--- R/EFDR_functions.R | 4 build/vignette.rds |binary inst/CITATION | 2 inst/doc/EFDR_SST.Rmd | 16 +-- inst/doc/EFDR_SST.html | 14 +-- inst/doc/EFDR_documents.html | 186 +++++++++++++++++++++++++++++++++++-------- man/EFDR.Rd | 1 man/df.to.mat.Rd | 2 man/diagnostic.table.Rd | 4 man/nei.efdr.Rd | 2 man/regrid.Rd | 15 ++- man/test.efdr.condsim.Rd | 18 +++- man/test_image.Rd | 3 man/wavelet-test.Rd | 12 ++ 16 files changed, 231 insertions(+), 96 deletions(-)
Title: Analyze Cricket Performances Based on Data from Cricsheet
Description: Analyzing performances of cricketers and cricket teams
based on 'yaml' match data from Cricsheet <https://cricsheet.org/>.
Author: Tinniam V Ganesh
Maintainer: Tinniam V Ganesh <tvganesh.85@gmail.com>
Diff between yorkr versions 0.0.20 dated 2021-04-09 and 0.0.21 dated 2021-04-18
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- R/convertAllYaml2RDataframesT20.R | 5 ----- R/convertYaml2RDataframeT20.R | 5 ----- R/getIPLBattingDetails.R | 2 +- R/getIPLBowlingDetails.R | 2 +- R/saveAllMatchesAllOppositionIPLT20.R | 2 +- R/saveAllMatchesBetween2IPLTeams.R | 2 +- R/teamBattingPerfDetails.R | 1 + R/teamBowlingPerfDetails.R | 1 + 10 files changed, 19 insertions(+), 27 deletions(-)
Title: PKPD, PBPK, and Systems Pharmacology Modeling Tools
Description: Complete work flow for the analysis of pharmacokinetic pharmacodynamic (PKPD), physiologically-based pharmacokinetic (PBPK) and systems pharmacology models including: creation of ordinary differential equation-based models, pooled parameter estimation, individual/population based simulations, rule-based simulations for clinical trial design and modeling assays, deployment with a customizable 'Shiny' app, and non-compartmental analysis. System-specific analysis templates can be generated and each element includes integrated reporting with 'PowerPoint' and 'Word'.
Author: John Harrold [aut, cre] (<https://orcid.org/0000-0003-2052-4373>)
Maintainer: John Harrold <john.m.harrold@gmail.com>
Diff between ubiquity versions 1.0.3 dated 2020-09-13 and 1.0.4 dated 2021-04-18
ubiquity-1.0.3/ubiquity/man/system_report_fetch.Rd |only ubiquity-1.0.3/ubiquity/man/tic.Rd |only ubiquity-1.0.3/ubiquity/man/toc.Rd |only ubiquity-1.0.4/ubiquity/DESCRIPTION | 22 ubiquity-1.0.4/ubiquity/MD5 | 121 ubiquity-1.0.4/ubiquity/NAMESPACE | 73 ubiquity-1.0.4/ubiquity/R/ubiquity.r | 3091 +++++++--- ubiquity-1.0.4/ubiquity/README.md | 15 ubiquity-1.0.4/ubiquity/build/partial.rdb |only ubiquity-1.0.4/ubiquity/build/vignette.rds |binary ubiquity-1.0.4/ubiquity/inst/doc/Deployment.html | 23 ubiquity-1.0.4/ubiquity/inst/doc/Estimation.html | 23 ubiquity-1.0.4/ubiquity/inst/doc/Language.html | 14 ubiquity-1.0.4/ubiquity/inst/doc/NCA.R | 81 ubiquity-1.0.4/ubiquity/inst/doc/NCA.Rmd | 156 ubiquity-1.0.4/ubiquity/inst/doc/NCA.html | 317 - ubiquity-1.0.4/ubiquity/inst/doc/Reporting.R | 132 ubiquity-1.0.4/ubiquity/inst/doc/Reporting.Rmd | 255 ubiquity-1.0.4/ubiquity/inst/doc/Reporting.html | 597 + ubiquity-1.0.4/ubiquity/inst/doc/Simulation.html | 37 ubiquity-1.0.4/ubiquity/inst/doc/Titration.Rmd | 2 ubiquity-1.0.4/ubiquity/inst/doc/Titration.html | 43 ubiquity-1.0.4/ubiquity/inst/ubinc/perl/build_system.pl | 8 ubiquity-1.0.4/ubiquity/inst/ubinc/scripts/analysis_nca_md.R | 125 ubiquity-1.0.4/ubiquity/inst/ubinc/scripts/analysis_nca_sd.R | 37 ubiquity-1.0.4/ubiquity/inst/ubinc/scripts/analysis_nca_sparse.R | 7 ubiquity-1.0.4/ubiquity/inst/ubinc/scripts/make_report_PowerPoint.R | 50 ubiquity-1.0.4/ubiquity/inst/ubinc/scripts/make_report_Word.R | 194 ubiquity-1.0.4/ubiquity/inst/ubinc/scripts/ubiquity_fcns.R | 3091 +++++++--- ubiquity-1.0.4/ubiquity/inst/ubinc/templates/org_functions.R | 233 ubiquity-1.0.4/ubiquity/inst/ubinc/templates/r_analysis_estimation.R | 8 ubiquity-1.0.4/ubiquity/inst/ubinc/templates/r_components.R | 202 ubiquity-1.0.4/ubiquity/inst/ubinc/templates/r_gui_save.R | 10 ubiquity-1.0.4/ubiquity/inst/ubinc/templates/r_nca.R | 9 ubiquity-1.0.4/ubiquity/inst/ubinc/templates/r_simulation_driver.R | 9 ubiquity-1.0.4/ubiquity/inst/ubinc/templates/r_system_report.Rmd | 5 ubiquity-1.0.4/ubiquity/inst/ubinc/templates/report.docx |binary ubiquity-1.0.4/ubiquity/inst/ubinc/templates/report.pptx |binary ubiquity-1.0.4/ubiquity/inst/ubinc/templates/ubiquity_server.R | 1 ubiquity-1.0.4/ubiquity/inst/ubinc/templates/ubiquity_server_custom.R | 7 ubiquity-1.0.4/ubiquity/man/md_to_officer.Rd | 41 ubiquity-1.0.4/ubiquity/man/md_to_oo.Rd |only ubiquity-1.0.4/ubiquity/man/system_define_cohort.Rd | 8 ubiquity-1.0.4/ubiquity/man/system_fetch_nca.Rd |only ubiquity-1.0.4/ubiquity/man/system_fetch_nca_columns.Rd |only ubiquity-1.0.4/ubiquity/man/system_fetch_report.Rd |only ubiquity-1.0.4/ubiquity/man/system_fetch_report_format.Rd |only ubiquity-1.0.4/ubiquity/man/system_fetch_template.Rd | 2 ubiquity-1.0.4/ubiquity/man/system_load_data.Rd | 2 ubiquity-1.0.4/ubiquity/man/system_log_init.Rd | 2 ubiquity-1.0.4/ubiquity/man/system_nca_parameters_meta.Rd |only ubiquity-1.0.4/ubiquity/man/system_nca_run.Rd | 11 ubiquity-1.0.4/ubiquity/man/system_nca_summary.Rd |only ubiquity-1.0.4/ubiquity/man/system_new.Rd | 6 ubiquity-1.0.4/ubiquity/man/system_new_list.Rd | 2 ubiquity-1.0.4/ubiquity/man/system_report_doc_add_content.Rd | 19 ubiquity-1.0.4/ubiquity/man/system_report_doc_set_ph.Rd | 6 ubiquity-1.0.4/ubiquity/man/system_report_nca.Rd | 2 ubiquity-1.0.4/ubiquity/man/system_report_ph_content.Rd | 5 ubiquity-1.0.4/ubiquity/man/system_report_set.Rd | 2 ubiquity-1.0.4/ubiquity/man/system_set_option.Rd | 198 ubiquity-1.0.4/ubiquity/man/system_view.Rd | 7 ubiquity-1.0.4/ubiquity/vignettes/NCA.Rmd | 156 ubiquity-1.0.4/ubiquity/vignettes/NCA_presim.RData |binary ubiquity-1.0.4/ubiquity/vignettes/Reporting.Rmd | 255 ubiquity-1.0.4/ubiquity/vignettes/Titration.Rmd | 2 ubiquity-1.0.4/ubiquity/vignettes/Titration_presim.RData |binary 67 files changed, 7223 insertions(+), 2501 deletions(-)
Title: Extra String Manipulation Functions
Description: There are some things that I wish were easier with
the 'stringr' or 'stringi' packages. The foremost of these is the
extraction of numbers from strings. 'stringr' and 'stringi' make you
figure out the regular expression for yourself; 'strex' takes care of
this for you. There are many other handy functionalities in 'strex'.
Contributions to this package are encouraged: it is intended as a
miscellany of string manipulation functions that cannot be found in
'stringi' or 'stringr'.
Author: Rory Nolan [aut, cre] (<https://orcid.org/0000-0002-5239-4043>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between strex versions 1.4.1 dated 2020-10-17 and 1.4.2 dated 2021-04-18
strex-1.4.1/strex/cleanup |only strex-1.4.1/strex/cleanup.win |only strex-1.4.2/strex/DESCRIPTION | 7 - strex-1.4.2/strex/MD5 | 30 +++---- strex-1.4.2/strex/NEWS.md | 9 +- strex-1.4.2/strex/R/arg-match.R | 11 +- strex-1.4.2/strex/R/trim.R | 27 ++---- strex-1.4.2/strex/R/utils.R | 15 +++ strex-1.4.2/strex/build/partial.rdb |binary strex-1.4.2/strex/inst/WORDLIST | 18 ++++ strex-1.4.2/strex/inst/doc/alphordering-numbers.html | 75 ++----------------- strex-1.4.2/strex/inst/doc/argument-matching.html | 75 ++----------------- strex-1.4.2/strex/inst/doc/before-and-after.html | 75 ++----------------- strex-1.4.2/strex/inst/doc/important-miscellany.html | 75 ++----------------- strex-1.4.2/strex/inst/doc/numbers-in-strings.html | 75 ++----------------- strex-1.4.2/strex/man/str_trim_anything.Rd | 1 strex-1.4.2/strex/tests/testthat/test-trim.R | 32 +++++--- 17 files changed, 148 insertions(+), 377 deletions(-)
Title: Sparse VAR/VECM Models Estimation
Description: A wrapper for sparse VAR/VECM time series models estimation
using penalties like ENET (Elastic Net), SCAD (Smoothly Clipped
Absolute Deviation) and MCP (Minimax Concave Penalty).
Based on the work of Sumanta Basu and George Michailidis
<doi:10.1214/15-AOS1315>.
Author: Simone Vazzoler [aut, cre]
Maintainer: Simone Vazzoler <svazzole@gmail.com>
Diff between sparsevar versions 0.0.11 dated 2019-08-19 and 0.1.0 dated 2021-04-18
sparsevar-0.0.11/sparsevar/inst/doc/using.html |only sparsevar-0.0.11/sparsevar/vignettes/using_cache/latex/unnamed-chunk-4_3897a5d4efc534c41ac499bc2c9439b6.RData |only sparsevar-0.0.11/sparsevar/vignettes/using_cache/latex/unnamed-chunk-4_3897a5d4efc534c41ac499bc2c9439b6.rdb |only sparsevar-0.0.11/sparsevar/vignettes/using_cache/latex/unnamed-chunk-4_3897a5d4efc534c41ac499bc2c9439b6.rdx |only sparsevar-0.0.11/sparsevar/vignettes/using_cache/latex/unnamed-chunk-5_18789e32a330a381ec44593f5f2f6b41.RData |only sparsevar-0.0.11/sparsevar/vignettes/using_cache/latex/unnamed-chunk-5_18789e32a330a381ec44593f5f2f6b41.rdb |only sparsevar-0.0.11/sparsevar/vignettes/using_cache/latex/unnamed-chunk-5_18789e32a330a381ec44593f5f2f6b41.rdx |only sparsevar-0.1.0/sparsevar/DESCRIPTION | 18 sparsevar-0.1.0/sparsevar/MD5 | 90 +- sparsevar-0.1.0/sparsevar/NEWS.md | 10 sparsevar-0.1.0/sparsevar/R/createSparseMatrix.R | 72 - sparsevar-0.1.0/sparsevar/R/fitVAR.R | 250 ++--- sparsevar-0.1.0/sparsevar/R/fitVARX.R | 50 - sparsevar-0.1.0/sparsevar/R/fitVECM.R | 106 +- sparsevar-0.1.0/sparsevar/R/impulseResponse.R | 439 ++++------ sparsevar-0.1.0/sparsevar/R/mcSimulations.R | 82 - sparsevar-0.1.0/sparsevar/R/plotIRF.R | 137 +-- sparsevar-0.1.0/sparsevar/R/plotMatrix.R | 126 +- sparsevar-0.1.0/sparsevar/R/simulateVAR.R | 76 - sparsevar-0.1.0/sparsevar/R/simulateVARX.R | 144 +-- sparsevar-0.1.0/sparsevar/R/sparsevar.R | 16 sparsevar-0.1.0/sparsevar/R/timeSlice.R | 123 +- sparsevar-0.1.0/sparsevar/R/twoStepOLS.R | 63 - sparsevar-0.1.0/sparsevar/R/utils.R | 62 - sparsevar-0.1.0/sparsevar/R/utilsVAR.R | 153 +-- sparsevar-0.1.0/sparsevar/README.md | 9 sparsevar-0.1.0/sparsevar/build/vignette.rds |binary sparsevar-0.1.0/sparsevar/inst/doc/using.R | 22 sparsevar-0.1.0/sparsevar/inst/doc/using.Rmd | 2 sparsevar-0.1.0/sparsevar/inst/doc/using.pdf |only sparsevar-0.1.0/sparsevar/man/checkImpulseZero.Rd | 2 sparsevar-0.1.0/sparsevar/man/computeForecasts.Rd | 4 sparsevar-0.1.0/sparsevar/man/createSparseMatrix.Rd | 30 sparsevar-0.1.0/sparsevar/man/errorBandsIRF.Rd | 2 sparsevar-0.1.0/sparsevar/man/fitVAR.Rd | 24 sparsevar-0.1.0/sparsevar/man/fitVARX.Rd | 2 sparsevar-0.1.0/sparsevar/man/fitVECM.Rd | 4 sparsevar-0.1.0/sparsevar/man/informCrit.Rd | 2 sparsevar-0.1.0/sparsevar/man/mcSimulations.Rd | 19 sparsevar-0.1.0/sparsevar/man/multiplot.Rd | 2 sparsevar-0.1.0/sparsevar/man/plotIRFGrid.Rd | 4 sparsevar-0.1.0/sparsevar/man/plotMatrix.Rd | 2 sparsevar-0.1.0/sparsevar/man/plotVAR.Rd | 2 sparsevar-0.1.0/sparsevar/man/plotVECM.Rd | 2 sparsevar-0.1.0/sparsevar/man/simulateVARX.Rd | 8 sparsevar-0.1.0/sparsevar/man/sparsevar.Rd | 5 sparsevar-0.1.0/sparsevar/vignettes/using.Rmd | 2 sparsevar-0.1.0/sparsevar/vignettes/using_cache/latex/unnamed-chunk-4_caa9654a9801b046bd4ae6f630181167.RData |only sparsevar-0.1.0/sparsevar/vignettes/using_cache/latex/unnamed-chunk-4_caa9654a9801b046bd4ae6f630181167.rdb |only sparsevar-0.1.0/sparsevar/vignettes/using_cache/latex/unnamed-chunk-4_caa9654a9801b046bd4ae6f630181167.rdx |only sparsevar-0.1.0/sparsevar/vignettes/using_cache/latex/unnamed-chunk-5_2975735d5dba207b1ee5041b0b610e12.RData |only sparsevar-0.1.0/sparsevar/vignettes/using_cache/latex/unnamed-chunk-5_2975735d5dba207b1ee5041b0b610e12.rdb |only sparsevar-0.1.0/sparsevar/vignettes/using_cache/latex/unnamed-chunk-5_2975735d5dba207b1ee5041b0b610e12.rdx |only 53 files changed, 1014 insertions(+), 1152 deletions(-)
Title: Random Subspace Ensemble Classification and Variable Screening
Description: We propose a general ensemble classification framework, RaSE algorithm, for the sparse classification problem. In RaSE algorithm, for each weak learner, some random subspaces are generated and the optimal one is chosen to train the model on the basis of some criterion. To be adapted to the problem, a novel criterion, ratio information criterion (RIC) is put up with based on Kullback-Leibler divergence. Besides minimizing RIC, multiple criteria can be applied, for instance, minimizing extended Bayesian information criterion (eBIC), minimizing training error, minimizing the validation error, minimizing the cross-validation error, minimizing leave-one-out error. There are various choices of base classifier, for instance, linear discriminant analysis, quadratic discriminant analysis, k-nearest neighbour, logistic regression, decision trees, random forest, support vector machines. RaSE algorithm can also be applied to do feature ranking, providing us the importance of each feature based on the selected percentage in multiple subspaces. RaSE framework can be extended to the general prediction framework, including both classification and regression. We can use the selected percentages of variables for variable screening. The latest version added the variable screening function for both regression and classification problems.
Author: Ye Tian [aut, cre] and Yang Feng [aut]
Maintainer: Ye Tian <ye.t@columbia.edu>
Diff between RaSEn versions 2.0.0 dated 2021-01-15 and 2.1.0 dated 2021-04-18
DESCRIPTION | 12 ++++---- MD5 | 46 ++++++++++++++++++-------------- NAMESPACE | 2 + R/RaModel.R | 59 +++++++++++++++++++++++++++++++++++------- R/RaPlot.R | 3 ++ R/RaRank.R | 6 ++-- R/RaScreen.R | 66 ++++++++++++++++++++++++++++++++++------------- R/RaSubsetsc_c.R | 21 ++++++++++++++ R/RaSubsetsc_rg.R | 21 ++++++++++++++ R/Rase.R | 15 +++++++--- R/colon.R |only R/predict.RaSE.R | 7 +++- R/rat.R |only data |only inst/doc/RaSEn-demo.Rmd | 2 - inst/doc/RaSEn-demo.pdf |binary man/RaModel.Rd | 12 ++++---- man/RaPlot.Rd | 3 ++ man/RaRank.Rd | 5 +-- man/RaScreen.Rd | 13 ++++----- man/Rase.Rd | 12 ++++---- man/colon.Rd |only man/predict.RaSE.Rd | 7 +++- man/rat.Rd |only vignettes/RaSEn-demo.Rmd | 2 - vignettes/reference.bib | 17 +++++++----- 26 files changed, 238 insertions(+), 93 deletions(-)
Title: Modeling and Analysis of Stochastic Systems
Description: Compute important quantities when we consider stochastic systems that are observed continuously. Such as, Cost model, Limiting distribution, Transition matrix, Transition distribution and Occupancy matrix. The methods are described, for example, Ross S. (2014), Introduction to Probability Models. Eleven Edition. Academic Press.
Author: Carlos Alberto Cardozo Delgado
Maintainer: Carlos Alberto Cardozo Delgado <cardozorpackages@gmail.com>
Diff between modesto versions 0.1.2 dated 2019-01-04 and 0.1.3 dated 2021-04-18
modesto-0.1.2/modesto/R/Pt.R |only modesto-0.1.2/modesto/man/Pt.Rd |only modesto-0.1.3/modesto/DESCRIPTION | 15 +++++----- modesto-0.1.3/modesto/MD5 | 36 +++++++++++++------------ modesto-0.1.3/modesto/NAMESPACE | 28 ++++++++++--------- modesto-0.1.3/modesto/R/ETCt.R | 8 ++++- modesto-0.1.3/modesto/R/LRC.R | 4 ++ modesto-0.1.3/modesto/R/LimDist.R | 6 +--- modesto-0.1.3/modesto/R/Mt.R | 6 +++- modesto-0.1.3/modesto/R/PXt.R | 10 +++++- modesto-0.1.3/modesto/R/Pt2.R |only modesto-0.1.3/modesto/R/RcppExports.R |only modesto-0.1.3/modesto/R/modesto-package.R |only modesto-0.1.3/modesto/R/summary.R | 5 ++- modesto-0.1.3/modesto/man/ETCt.Rd | 2 - modesto-0.1.3/modesto/man/LimDist.Rd | 2 - modesto-0.1.3/modesto/man/Mt.Rd | 2 - modesto-0.1.3/modesto/man/PXt.Rd | 2 - modesto-0.1.3/modesto/man/Pt2.Rd |only modesto-0.1.3/modesto/man/summary.modesto.Rd | 5 +++ modesto-0.1.3/modesto/src |only modesto-0.1.3/modesto/tests/testthat/test_Pt.R | 2 - 22 files changed, 82 insertions(+), 51 deletions(-)
Title: Probabilistic Supervised Learning for 'mlr3'
Description: Provides extensions for probabilistic supervised
learning for 'mlr3'. This includes extending the regression task to
probabilistic and interval regression, adding a survival task, and
other specialized models, predictions, and measures. mlr3extralearners is available
from <https://github.com/mlr-org/mlr3extralearners>.
Author: Raphael Sonabend [aut, cre] (<https://orcid.org/0000-0001-9225-4654>),
Franz Kiraly [aut],
Michel Lang [aut] (<https://orcid.org/0000-0001-9754-0393>),
Nurul Ain Toha [ctb],
Andreas Bender [ctb] (<https://orcid.org/0000-0001-5628-8611>)
Maintainer: Raphael Sonabend <raphaelsonabend@gmail.com>
Diff between mlr3proba versions 0.3.2 dated 2021-03-15 and 0.4.0 dated 2021-04-18
mlr3proba-0.3.2/mlr3proba/R/MeasureSurvBeggC.R |only mlr3proba-0.3.2/mlr3proba/R/MeasureSurvGonenHellersC.R |only mlr3proba-0.3.2/mlr3proba/R/MeasureSurvGrafSE.R |only mlr3proba-0.3.2/mlr3proba/R/MeasureSurvHarrellC.R |only mlr3proba-0.3.2/mlr3proba/R/MeasureSurvIntLoglossSE.R |only mlr3proba-0.3.2/mlr3proba/R/MeasureSurvLoglossSE.R |only mlr3proba-0.3.2/mlr3proba/R/MeasureSurvMAESE.R |only mlr3proba-0.3.2/mlr3proba/R/MeasureSurvMSESE.R |only mlr3proba-0.3.2/mlr3proba/R/MeasureSurvRMSESE.R |only mlr3proba-0.3.2/mlr3proba/R/MeasureSurvUnoC.R |only mlr3proba-0.3.2/mlr3proba/man/mlr_measures_surv.beggC.Rd |only mlr3proba-0.3.2/mlr3proba/man/mlr_measures_surv.gonenC.Rd |only mlr3proba-0.3.2/mlr3proba/man/mlr_measures_surv.grafSE.Rd |only mlr3proba-0.3.2/mlr3proba/man/mlr_measures_surv.harrellC.Rd |only mlr3proba-0.3.2/mlr3proba/man/mlr_measures_surv.intloglossSE.Rd |only mlr3proba-0.3.2/mlr3proba/man/mlr_measures_surv.logloss_se.Rd |only mlr3proba-0.3.2/mlr3proba/man/mlr_measures_surv.maeSE.Rd |only mlr3proba-0.3.2/mlr3proba/man/mlr_measures_surv.mseSE.Rd |only mlr3proba-0.3.2/mlr3proba/man/mlr_measures_surv.rmseSE.Rd |only mlr3proba-0.3.2/mlr3proba/man/mlr_measures_surv.unoC.Rd |only mlr3proba-0.4.0/mlr3proba/DESCRIPTION | 36 +-- mlr3proba-0.4.0/mlr3proba/MD5 | 120 ++++------ mlr3proba-0.4.0/mlr3proba/NAMESPACE | 11 mlr3proba-0.4.0/mlr3proba/NEWS.md | 9 mlr3proba-0.4.0/mlr3proba/R/MeasureSurv.R | 2 mlr3proba-0.4.0/mlr3proba/R/MeasureSurvCindex.R | 7 mlr3proba-0.4.0/mlr3proba/R/MeasureSurvDCalibration.R |only mlr3proba-0.4.0/mlr3proba/R/MeasureSurvGraf.R | 54 +++- mlr3proba-0.4.0/mlr3proba/R/MeasureSurvIntLogloss.R | 72 +++--- mlr3proba-0.4.0/mlr3proba/R/MeasureSurvIntegrated.R | 42 +++ mlr3proba-0.4.0/mlr3proba/R/MeasureSurvLogloss.R | 49 +++- mlr3proba-0.4.0/mlr3proba/R/MeasureSurvSchmid.R | 51 +++- mlr3proba-0.4.0/mlr3proba/R/RcppExports.R | 4 mlr3proba-0.4.0/mlr3proba/R/bibentries.R | 11 mlr3proba-0.4.0/mlr3proba/R/integrated_scores.R | 19 + mlr3proba-0.4.0/mlr3proba/R/pecs.R | 68 ++++- mlr3proba-0.4.0/mlr3proba/R/surv_measures.R | 19 + mlr3proba-0.4.0/mlr3proba/R/zzz.R | 37 --- mlr3proba-0.4.0/mlr3proba/build/partial.rdb |binary mlr3proba-0.4.0/mlr3proba/man/MeasureSurv.Rd | 2 mlr3proba-0.4.0/mlr3proba/man/MeasureSurvIntegrated.Rd | 23 + mlr3proba-0.4.0/mlr3proba/man/mlr3proba-package.Rd | 2 mlr3proba-0.4.0/mlr3proba/man/mlr_measures_dens.logloss.Rd | 2 mlr3proba-0.4.0/mlr3proba/man/mlr_measures_surv.calib_alpha.Rd | 18 - mlr3proba-0.4.0/mlr3proba/man/mlr_measures_surv.calib_beta.Rd | 16 - mlr3proba-0.4.0/mlr3proba/man/mlr_measures_surv.chambless_auc.Rd | 13 - mlr3proba-0.4.0/mlr3proba/man/mlr_measures_surv.cindex.Rd | 18 - mlr3proba-0.4.0/mlr3proba/man/mlr_measures_surv.dcalib.Rd |only mlr3proba-0.4.0/mlr3proba/man/mlr_measures_surv.graf.Rd | 53 +++- mlr3proba-0.4.0/mlr3proba/man/mlr_measures_surv.hung_auc.Rd | 13 - mlr3proba-0.4.0/mlr3proba/man/mlr_measures_surv.intlogloss.Rd | 50 ++-- mlr3proba-0.4.0/mlr3proba/man/mlr_measures_surv.logloss.Rd | 47 ++- mlr3proba-0.4.0/mlr3proba/man/mlr_measures_surv.mae.Rd | 14 - mlr3proba-0.4.0/mlr3proba/man/mlr_measures_surv.mse.Rd | 14 - mlr3proba-0.4.0/mlr3proba/man/mlr_measures_surv.nagelk_r2.Rd | 13 - mlr3proba-0.4.0/mlr3proba/man/mlr_measures_surv.oquigley_r2.Rd | 13 - mlr3proba-0.4.0/mlr3proba/man/mlr_measures_surv.rmse.Rd | 16 - mlr3proba-0.4.0/mlr3proba/man/mlr_measures_surv.schmid.Rd | 55 +++- mlr3proba-0.4.0/mlr3proba/man/mlr_measures_surv.song_auc.Rd | 13 - mlr3proba-0.4.0/mlr3proba/man/mlr_measures_surv.song_tnr.Rd | 13 - mlr3proba-0.4.0/mlr3proba/man/mlr_measures_surv.song_tpr.Rd | 13 - mlr3proba-0.4.0/mlr3proba/man/mlr_measures_surv.uno_auc.Rd | 13 - mlr3proba-0.4.0/mlr3proba/man/mlr_measures_surv.uno_tnr.Rd | 13 - mlr3proba-0.4.0/mlr3proba/man/mlr_measures_surv.uno_tpr.Rd | 13 - mlr3proba-0.4.0/mlr3proba/man/mlr_measures_surv.xu_r2.Rd | 13 - mlr3proba-0.4.0/mlr3proba/man/pecs.Rd | 36 ++- mlr3proba-0.4.0/mlr3proba/src/RcppExports.cpp | 10 mlr3proba-0.4.0/mlr3proba/src/survival_scores.cpp | 37 ++- mlr3proba-0.4.0/mlr3proba/tests/testthat/test_mlr_measures.R | 32 +- mlr3proba-0.4.0/mlr3proba/tests/testthat/test_mlr_measures_MeasureSurvIntegrated.R | 28 ++ mlr3proba-0.4.0/mlr3proba/tests/testthat/test_mlr_measures_MeasureSurvLogloss.R | 6 mlr3proba-0.4.0/mlr3proba/tests/testthat/test_pecs.R | 2 72 files changed, 668 insertions(+), 567 deletions(-)
Title: Graceful 'ggplot'-Based Graphics and Other Functions for GAMs
Fitted Using 'mgcv'
Description: Graceful 'ggplot'-based graphics and utility functions for working with generalized additive models (GAMs) fitted using the 'mgcv' package. Provides a reimplementation of the plot() method for GAMs that 'mgcv' provides, as well as 'tidyverse' compatible representations of estimated smooths.
Author: Gavin L. Simpson [aut, cre] (<https://orcid.org/0000-0002-9084-8413>),
Henrik Singmann [ctb] (<https://orcid.org/0000-0002-4842-3657>)
Maintainer: Gavin L. Simpson <ucfagls@gmail.com>
Diff between gratia versions 0.5.1 dated 2021-01-23 and 0.6.0 dated 2021-04-18
DESCRIPTION | 12 MD5 | 269 NAMESPACE | 29 NEWS.md | 81 R/add-methods.R | 86 R/compare-smooths.R |only R/derivatives.R | 39 R/diagnose.R | 364 R/draw-methods.R | 80 R/edf.R |only R/evaluate_smooth.R | 4 R/evaluate_smooth2.R | 9 R/family-utils.R | 222 R/penalty.R | 36 R/posterior-samples.R | 42 R/utililties.R | 2 R/variance-components.R |only build/partial.rdb |binary man/add_confint.Rd |only man/add_constant.Rd | 18 man/appraise.Rd | 24 man/compare_smooths.Rd |only man/derivatives.Rd | 13 man/draw.compare_smooths.Rd |only man/draw.derivatives.Rd | 26 man/draw.difference_smooth.Rd | 3 man/draw.gam.Rd | 24 man/draw.mgcv_smooth.Rd | 2 man/draw.penalty_df.Rd | 2 man/draw.smooth_samples.Rd | 22 man/edf.Rd |only man/figures/README-appraise-figure-1.png |binary man/figures/README-draw-gam-figure-1.png |binary man/figures/README-draw-gam-figure-2d-1.png |binary man/fitted_samples.Rd |only man/link.Rd | 49 man/penalty.Rd | 6 man/predicted_samples.Rd | 71 man/qq_plot.Rd | 26 man/smooth_estimates.Rd | 3 man/variance_comp.Rd |only man/worm_plot.Rd |only tests/Examples/gratia-Ex.Rout.save | 320 tests/figs/diagnostic-plots/appraise-diagnostic-plots.svg | 2782 - tests/figs/draw-methods/draw-1d-smooth-for-selected-smooth-with-overall-uncertainty-false.svg | 64 tests/figs/draw-methods/draw-1d-smooth-for-selected-smooth.svg | 46 tests/figs/draw-methods/draw-2d-smooth-diff-contour-colour.svg | 79 tests/figs/draw-methods/draw-2d-smooth-with-20-contour-bins.svg | 102 tests/figs/draw-methods/draw-2d-smooth-with-5-contour-bins.svg | 63 tests/figs/draw-methods/draw-2d-smooth-with-spectral-palette.svg | 159 tests/figs/draw-methods/draw-2d-smooth-without-contours.svg | 52 tests/figs/draw-methods/draw-2d-smooth.svg | 79 tests/figs/draw-methods/draw-am-with-2d-smooth.svg | 159 tests/figs/draw-methods/draw-am-with-continuous-by-var-fixed-scale.svg | 896 tests/figs/draw-methods/draw-am-with-continuous-by-variable-smooth.svg | 896 tests/figs/draw-methods/draw-am-with-factor-by-variable-smooth-with-fixed-scales.svg | 3640 - tests/figs/draw-methods/draw-am-with-factor-by-variable-smooth.svg | 3680 - tests/figs/draw-methods/draw-derivatives-for-a-gam-with-fixed-scales.svg | 406 tests/figs/draw-methods/draw-derivatives-for-a-gam.svg | 395 tests/figs/draw-methods/draw-evaulated-2d-smooth-standard-errors.svg | 131 tests/figs/draw-methods/draw-fs-smooth-with-discrete-plasma-palette.svg | 3306 - tests/figs/draw-methods/draw-gam-model-with-fs-smooth-fixed-scales.svg | 3320 - tests/figs/draw-methods/draw-gam-model-with-fs-smooth.svg | 3306 - tests/figs/draw-methods/draw-gam-model-with-non-standard-names.svg | 210 tests/figs/draw-methods/draw-gam-model-with-ranef-smooth-factor-by-fixed-scales.svg | 3164 - tests/figs/draw-methods/draw-gam-model-with-ranef-smooth-factor-by.svg | 3170 - tests/figs/draw-methods/draw-gam-model-with-ranef-smooth-fixed-scales.svg | 3746 - tests/figs/draw-methods/draw-gam-model-with-ranef-smooth.svg | 3738 - tests/figs/draw-methods/draw-gam-smooth-for-selected-smooth-character.svg | 1294 tests/figs/draw-methods/draw-gam-smooth-for-selected-smooth-logical.svg | 1300 tests/figs/draw-methods/draw-gam-smooth-for-selected-smooth-numeric.svg | 1294 tests/figs/draw-methods/draw-gam-smooth-for-two-selected-smooths-character.svg | 2584 - tests/figs/draw-methods/draw-gam-smooth-for-two-selected-smooths-logical.svg | 2584 - tests/figs/draw-methods/draw-gam-smooth-for-two-selected-smooths-numeric.svg | 2584 - tests/figs/draw-methods/draw-gam-with-factor-parametric-term.svg | 1566 tests/figs/draw-methods/draw-gam-with-linear-parametric-term.svg | 1964 tests/figs/draw-methods/draw-gam-with-overall-uncertainty-false.svg | 5190 +- tests/figs/draw-methods/draw-gam-with-partial-match-true.svg | 2690 - tests/figs/draw-methods/draw-gam-with-select-and-parametric-is-false.svg | 2690 - tests/figs/draw-methods/draw-gam-with-select-and-parametric-is-null.svg | 2690 - tests/figs/draw-methods/draw-gam-with-select-and-parametric-is-true.svg | 2784 - tests/figs/draw-methods/draw-gam-without-select-and-parametric-is-false.svg | 3586 - tests/figs/draw-methods/draw-gam-without-select-and-parametric-is-true.svg | 3680 - tests/figs/draw-methods/draw-issue-39-empty-plots.svg | 1582 tests/figs/draw-methods/draw-penalty-df-issue-95-label-order.svg |only tests/figs/draw-methods/draw-penalty-df-with-multiple-smooths-normalized.svg | 576 tests/figs/draw-methods/draw-penalty-df-with-multiple-smooths-user-continous-fill.svg | 556 tests/figs/draw-methods/draw-penalty-df-with-multiple-smooths.svg | 564 tests/figs/draw-methods/draw-penalty-df-with-single-smooths-normalized.svg | 144 tests/figs/draw-methods/draw-penalty-df-with-single-smooths-user-continous-fill.svg | 139 tests/figs/draw-methods/draw-penalty-df-with-single-smooths.svg | 141 tests/figs/draw-methods/draw-selected-factor-by-smooth-samples-for-gam-m3.svg |18362 +++---- tests/figs/draw-methods/draw-selected-smooth-samples-for-gam-m3.svg | 6118 +- tests/figs/draw-methods/draw-simple-multi-smooth-am-with-fixed-scales.svg | 5198 +- tests/figs/draw-methods/draw-simple-multi-smooth-am.svg | 5173 +- tests/figs/draw-methods/draw-simple-partial-residuals-with-fixed-scales.svg |10002 ++-- tests/figs/draw-methods/draw-simple-partial-residuals.svg | 9980 ++-- tests/figs/draw-methods/draw-smooth-samples-for-gam-m1.svg |24467 ++++----- tests/figs/draw-methods/draw-smooth-samples-for-gam-m3.svg |24474 +++++----- tests/figs/draw-methods/draw-std-error-of-2d-smooth.svg | 131 tests/figs/draw-methods/draw-ziplss-parametric-terms-issue-45.svg | 4412 - tests/figs/draw-methods/issue-22-draw-with-mixed-random-effects.svg | 106 tests/figs/draw-methods/issue-73-draw-uses-fixed-scales-if-asked-for-them.svg | 2769 - tests/figs/qq-plot-methods/qq-plot-data-simulation-pearson-residuals.svg | 440 tests/figs/qq-plot-methods/qq-plot-data-simulation-response-residuals.svg | 444 tests/figs/qq-plot-methods/qq-plot-data-simulation.svg | 440 tests/figs/qq-plot-methods/qq-plot-normality-assumption-pearson-residuals.svg | 425 tests/figs/qq-plot-methods/qq-plot-normality-assumption-response-residuals.svg | 417 tests/figs/qq-plot-methods/qq-plot-normality-assumption.svg | 421 tests/figs/qq-plot-methods/qq-plot-uniform-randomisation-pearson-residuals.svg |only tests/figs/qq-plot-methods/qq-plot-uniform-randomisation-response-residuals.svg |only tests/figs/qq-plot-methods/qq-plot-uniform-randomisation.svg |only tests/figs/qq-plot-methods/worm-plot-data-simulation-pearson-residuals.svg |only tests/figs/qq-plot-methods/worm-plot-data-simulation-response-residuals.svg |only tests/figs/qq-plot-methods/worm-plot-data-simulation.svg |only tests/figs/qq-plot-methods/worm-plot-direct-randomisation-pearson-residuals.svg |only tests/figs/qq-plot-methods/worm-plot-direct-randomisation-response-residuals.svg |only tests/figs/qq-plot-methods/worm-plot-direct-randomisation.svg |only tests/figs/qq-plot-methods/worm-plot-normality-assumption-pearson-residuals.svg |only tests/figs/qq-plot-methods/worm-plot-normality-assumption-response-residuals.svg |only tests/figs/qq-plot-methods/worm-plot-normality-assumption.svg |only tests/figs/test-by-variables/continuous-by-variable-smmoth.svg | 902 tests/figs/test-by-variables/draw-gam-user-select-and-parametric-true.svg | 986 tests/figs/test-derivatives-methods |only tests/figs/test-hgam-paper-models/hgam-paper-bird-move-model-1.svg | 172 tests/figs/test-hgam-paper-models/hgam-paper-bird-move-model-2.svg | 184 tests/figs/test-hgam-paper-models/hgam-paper-bird-move-model-3.svg | 1478 tests/figs/test-hgam-paper-models/hgam-paper-bird-move-model-5.svg | 1346 tests/figs/test-hgam-paper-models/hgam-paper-co2-model-1.svg | 384 tests/figs/test-hgam-paper-models/hgam-paper-co2-model-2.svg | 548 tests/figs/test-hgam-paper-models/hgam-paper-co2-model-3.svg | 4160 - tests/figs/test-hgam-paper-models/hgam-paper-co2-model-4.svg | 294 tests/figs/test-hgam-paper-models/hgam-paper-co2-model-5.svg | 3770 - tests/figs/test-hgam-paper-models/hgam-paper-zoop-model-4.svg | 2502 - tests/figs/test-hgam-paper-models/hgam-paper-zoop-model-5.svg |17280 +++---- tests/figs/worm-plot-methods |only tests/testthat/test-derivatives.R | 61 tests/testthat/test-draw-methods.R | 22 tests/testthat/test-evaluate-smooth-methods.R | 8 tests/testthat/test-family-utils.R | 123 tests/testthat/test-qq-plot.R | 26 tests/testthat/test-simulate-methods.R | 1 tests/testthat/test-worm-plot.R |only 143 files changed, 123221 insertions(+), 106460 deletions(-)