Title: Bayesian Modelling of Extremal Dependence in Time Series
Description: Characterisation of the extremal dependence structure of time series, avoiding pre-processing and filtering as done typically with peaks-over-threshold methods. It uses the conditional approach of Heffernan and Tawn (2004) <DOI:10.1111/j.1467-9868.2004.02050.x> which is very flexible in terms of extremal and asymptotic dependence structures, and Bayesian methods improve efficiency and allow for deriving measures of uncertainty. For example, the extremal index, related to the size of clusters in time, can be estimated and samples from its posterior distribution obtained.
Author: Thomas Lugrin
Maintainer: Thomas Lugrin <thomas.lugrin@alumni.epfl.ch>
Diff between tsxtreme versions 0.3.2 dated 2018-12-21 and 0.3.3 dated 2021-04-23
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/etfit.R | 4 ++-- R/tictoc.R | 25 ++++++++----------------- build/partial.rdb |binary 6 files changed, 24 insertions(+), 29 deletions(-)
Title: Mediation Analysis for Count and Zero-Inflated Count Data
Description: Performs causal mediation analysis for count and zero-inflated
count data without or with a post-treatment confounder; calculates power
to detect prespecified causal mediation effects, direct effects, and
total effects; performs sensitivity analysis when there is a treatment-
induced mediator-outcome confounder as described by Cheng, J., Cheng, N.F.,
Guo, Z., Gregorich, S., Ismail, A.I., Gansky, S.A. (2018)
<doi:10.1177/0962280216686131>. Implements Instrumental Variable (IV)
method to estimate the controlled (natural) direct and mediation effects,
and compute the bootstrap Confidence Intervals as described by Guo, Z.,
Small, D.S., Gansky, S.A., Cheng, J. (2018) <doi:10.1111/rssc.12233>. This
software was made possible by Grant R03DE028410 from the The National
Institute of Dental and Craniofacial Research, a component of the National
Institutes of Health.
Author: Nancy Cheng, Zijian Guo, Jing Cheng
Maintainer: Nancy Cheng <Nancy.Cheng@ucsf.edu>
Diff between maczic versions 0.1.0 dated 2020-11-09 and 0.2.0 dated 2021-04-23
DESCRIPTION | 11 +++++++---- MD5 | 7 ++++--- NEWS.md |only R/maczic_power.R | 13 ++++++------- build/maczic.pdf |binary 5 files changed, 17 insertions(+), 14 deletions(-)
Title: 'WebSocket' Client Library
Description: Provides a 'WebSocket' client interface for R.
'WebSocket' is a protocol for low-overhead real-time communication:
<https://en.wikipedia.org/wiki/WebSocket>.
Author: Winston Chang [aut, cre],
Joe Cheng [aut],
Alan Dipert [aut],
Barbara Borges [aut],
RStudio [cph],
Peter Thorson [ctb, cph] (WebSocket++ library),
René Nyffenegger [ctb, cph] (Base 64 library),
Micael Hildenborg [ctb, cph] (SHA1 library),
Aladdin Enterprises [cph] (MD5 library),
Bjoern Hoehrmann [ctb, cph] (UTF8 Validation library)
Maintainer: Winston Chang <winston@rstudio.com>
Diff between websocket versions 1.3.2 dated 2021-02-10 and 1.4.0 dated 2021-04-23
websocket-1.3.2/websocket/R/RcppExports.R |only websocket-1.3.2/websocket/src/RcppExports.cpp |only websocket-1.4.0/websocket/DESCRIPTION | 14 +- websocket-1.4.0/websocket/MD5 | 30 ++--- websocket-1.4.0/websocket/NAMESPACE | 1 websocket-1.4.0/websocket/NEWS.md | 5 websocket-1.4.0/websocket/R/cpp11.R |only websocket-1.4.0/websocket/R/websocket.R | 2 websocket-1.4.0/websocket/build/vignette.rds |binary websocket-1.4.0/websocket/inst/doc/overview.html | 9 + websocket-1.4.0/websocket/src/Makevars.in | 2 websocket-1.4.0/websocket/src/Makevars.win | 3 websocket-1.4.0/websocket/src/client.hpp | 10 - websocket-1.4.0/websocket/src/cpp11.cpp |only websocket-1.4.0/websocket/src/websocket.cpp | 44 +++----- websocket-1.4.0/websocket/src/websocket_connection.cpp | 86 +++++++++++------ websocket-1.4.0/websocket/src/websocket_connection.h | 25 ++-- websocket-1.4.0/websocket/src/websocket_task.h | 8 - 18 files changed, 134 insertions(+), 105 deletions(-)
Title: Tools for Temporal Social Network Analysis
Description: Temporal SNA tools for continuous- and discrete-time longitudinal networks having vertex, edge, and attribute dynamics stored in the 'networkDynamic' format. This work was supported by grant R01HD68395 from the National Institute of Health.
Author: Skye Bender-deMoll [aut, cre],
Martina Morris [aut],
James Moody [ctb]
Maintainer: Skye Bender-deMoll <skyebend@uw.edu>
Diff between tsna versions 0.3.1 dated 2020-01-20 and 0.3.3 dated 2021-04-23
ChangeLog | 4 DESCRIPTION | 12 - MD5 | 14 +- README.md | 4 build/vignette.rds |binary inst/doc/tsna_vignette.Rmd | 10 - inst/doc/tsna_vignette.html | 294 ++++++++++++++------------------------------ vignettes/tsna_vignette.Rmd | 10 - 8 files changed, 128 insertions(+), 220 deletions(-)
Title: Predict the Race and Gender of a Given Name Using Census and
Social Security Administration Data
Description: Predicts the most common race of a surname and based on U.S. Census
data, and the most common first named based on U.S. Social Security Administration data.
Author: Jacob Kaplan [aut, cre] (<https://orcid.org/0000-0002-0601-0387>)
Maintainer: Jacob Kaplan <jkkaplan6@gmail.com>
Diff between predictrace versions 1.2.1 dated 2020-09-16 and 2.0.0 dated 2021-04-23
DESCRIPTION | 15 - MD5 | 38 +-- NAMESPACE | 1 NEWS.md | 8 R/data.R | 41 +++ R/main.R | 100 ++++++++ R/sysdata.rda |binary README.md | 170 ++++++++++++--- build/vignette.rds |binary data/first_names_gender.rda |only data/first_names_race.rda |only data/surnames_race.rda |binary inst/doc/Predict-race-of-surname.R | 33 ++ inst/doc/Predict-race-of-surname.Rmd | 77 ++++++ inst/doc/Predict-race-of-surname.html | 361 ++++++++++---------------------- man/first_names_gender.Rd |only man/first_names_race.Rd |only man/predict_gender.Rd |only man/predict_race.Rd | 20 + tests/testthat/test-error-silent-stop.R | 63 +++++ tests/testthat/test-race.R | 91 +++++++- tests/testthat/test-test-gender.R |only vignettes/Predict-race-of-surname.Rmd | 77 ++++++ 23 files changed, 783 insertions(+), 312 deletions(-)
Title: Import and Export 'SPSS', 'Stata' and 'SAS' Files
Description: Import foreign statistical formats into R via the embedded
'ReadStat' C library, <https://github.com/WizardMac/ReadStat>.
Author: Hadley Wickham [aut, cre],
Evan Miller [aut, cph] (Author of included ReadStat code),
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between haven versions 2.4.0 dated 2021-04-14 and 2.4.1 dated 2021-04-23
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/labelled.R | 2 +- build/vignette.rds |binary inst/doc/semantics.html | 30 +++++++++++++++--------------- tests/testthat/test-labelled.R | 8 ++++++++ 7 files changed, 37 insertions(+), 25 deletions(-)
Title: HTTP and WebSocket Server Library
Description: Provides low-level socket and protocol support for handling
HTTP and WebSocket requests directly from within R. It is primarily
intended as a building block for other packages, rather than making it
particularly easy to create complete web applications using httpuv alone.
httpuv is built on top of the libuv and http-parser C libraries, both of
which were developed by Joyent, Inc. (See LICENSE file for libuv and
http-parser license information.)
Author: Joe Cheng [aut],
Winston Chang [aut, cre],
RStudio, PBC [cph],
Hector Corrada Bravo [ctb],
Jeroen Ooms [ctb],
Andrzej Krzemienski [cph] (optional.hpp)
Maintainer: Winston Chang <winston@rstudio.com>
Diff between httpuv versions 1.5.5 dated 2021-01-13 and 1.6.0 dated 2021-04-23
DESCRIPTION | 16 +++--- LICENSE | 36 +++++++++++++++ MD5 | 55 ++++++++++++----------- NEWS.md | 5 ++ src/auto_deleter.h | 4 - src/callback.cpp | 6 +- src/callback.h | 12 ++--- src/callbackqueue.cpp | 6 +- src/callbackqueue.h | 6 +- src/http.cpp | 29 ++++++------ src/http.h | 36 +++++++-------- src/httprequest.cpp | 105 ++++++++++++++++++++++----------------------- src/httprequest.h | 48 +++++++++----------- src/httpresponse.cpp | 14 +++--- src/httpresponse.h | 15 +++--- src/httpuv.cpp | 64 +++++++++++++-------------- src/optional.h |only src/socket.cpp | 8 +-- src/socket.h | 12 ++--- src/staticpath.cpp | 57 ++++++++++++------------ src/staticpath.h | 32 ++++++------- src/timegm.cpp |only src/timegm.h |only src/utils.cpp | 113 +++++++++++++++++++++++++++++++++++++++++++++++++ src/utils.h | 85 ++++++------------------------------ src/uvutil.h | 10 ++-- src/webapplication.cpp | 107 ++++++++++++++++++++++------------------------ src/webapplication.h | 62 +++++++++++++------------- src/websockets.cpp | 6 -- src/websockets.h | 8 +-- 30 files changed, 521 insertions(+), 436 deletions(-)
Title: Multivariate Data Analysis for Chemometrics
Description: Projection based methods for preprocessing,
exploring and analysis of multivariate data used in chemometrics.
S. Kucheryavskiy (2020) <doi: 10.1016/j.chemolab.2020.103937>.
Author: Sergey Kucheryavskiy (<https://orcid.org/0000-0002-3145-7244>)
Maintainer: Sergey Kucheryavskiy <svkucheryavski@gmail.com>
Diff between mdatools versions 0.11.3 dated 2021-01-22 and 0.11.4 dated 2021-04-23
DESCRIPTION | 8 +- MD5 | 36 ++++----- NEWS.md | 14 +++ R/constraints.R | 8 +- R/ipls.R | 175 +++++++++++++++++++++++++--------------------- R/mcrals.R | 78 +++++++++++++++++--- R/mcrpure.R | 1 R/pca.R | 3 R/pls.R | 2 R/prep.R | 2 R/regmodel.R | 4 - README.md | 6 - man/ipls.Rd | 6 + man/ipls.backward.Rd | 6 + man/ipls.forward.Rd | 6 + man/mcrals.Rd | 39 +++++++++- man/mcrals.cal.Rd | 6 + man/plotRMSE.ipls.Rd | 2 man/plotSelection.ipls.Rd | 2 19 files changed, 280 insertions(+), 124 deletions(-)
Title: Build Error Correction Models
Description: Functions for easy building of error correction models (ECM) for time series regression.
Author: Gaurav Bansal
Maintainer: Gaurav Bansal <gaurbans@gmail.com>
Diff between ecm versions 5.1.0 dated 2021-02-10 and 6.1.0 dated 2021-04-23
DESCRIPTION | 10 ++--- MD5 | 28 +++++++------- R/ecm.R | 102 ++++++++++++++++++++++++++++++++++++++++-------------- R/ecmave.R | 1 R/ecmaveback.r | 2 + R/ecmback.r | 2 + R/ecmpredict.r | 69 ++++++++++++++++++++---------------- R/lmave.R | 7 ++- README.md | 2 - man/ecm.Rd | 43 +++++++++++++++++++--- man/ecmave.Rd | 4 +- man/ecmaveback.Rd | 4 +- man/ecmback.Rd | 4 +- man/ecmpredict.Rd | 4 +- man/lmave.Rd | 8 ++-- 15 files changed, 198 insertions(+), 92 deletions(-)
Title: Analysis of Selection Index in Plant Breeding
Description: The aim of most plant breeding programmes is simultaneous improvement of several characters. An objective method involving simultaneous selection for several attributes then becomes necessary. It has been recognised that most rapid improvements in the economic value is expected from selection applied simultaneously to all the characters which determine the economic value of a plant, and appropriate assigned weights to each character according to their economic importance, heritability and correlations between characters. So the selection for economic value is a complex matter. If the component characters are combined together into an index in such a way that when selection is applied to the index, as if index is the character to be improved, most rapid improvement of economic value is expected. Such an index was first proposed by Smith (1937 <doi:10.1111/j.1469-1809.1936.tb02143.x>) based on the Fisher's (1936 <doi:10.1111/j.1469-1809.1936.tb02137.x>) "discriminant function" Dabholkar (1999 <https://books.google.co.in/books?id=mlFtumAXQ0oC&lpg=PA4&ots=Xgxp1qLuxS&dq=elements%20of%20biometrical%20genetics&lr&pg=PP1#v=onepage&q&f=false>). In this package selection index is calculated based on the Smith (1937) selection index method.
Author: Zankrut Goyani [aut, cre, cph],
Alok Shrivastva [aut],
Yogesh Garde [aut],
Arvind Chaudhary [aut]
Maintainer: Zankrut Goyani <zankrut20@gmail.com>
Diff between selection.index versions 1.0.0 dated 2021-04-06 and 1.1.0 dated 2021-04-23
selection.index-1.0.0/selection.index/R/rank.index.R |only selection.index-1.0.0/selection.index/man/rank.index.Rd |only selection.index-1.0.0/selection.index/tests/testthat/test-rank.index.R |only selection.index-1.1.0/selection.index/DESCRIPTION | 27 - selection.index-1.1.0/selection.index/MD5 | 37 - selection.index-1.1.0/selection.index/NAMESPACE | 19 selection.index-1.1.0/selection.index/NEWS.md |only selection.index-1.1.0/selection.index/R/comb.indices.R |only selection.index-1.1.0/selection.index/R/phen.varcov.R | 2 selection.index-1.1.0/selection.index/README.md | 39 - selection.index-1.1.0/selection.index/build/vignette.rds |binary selection.index-1.1.0/selection.index/inst/doc/Examples.R | 33 - selection.index-1.1.0/selection.index/inst/doc/Examples.Rmd | 42 - selection.index-1.1.0/selection.index/inst/doc/Examples.html | 225 ++++++---- selection.index-1.1.0/selection.index/man/comb.indices.Rd |only selection.index-1.1.0/selection.index/man/gen.varcov.Rd | 48 +- selection.index-1.1.0/selection.index/man/phen.varcov.Rd | 48 +- selection.index-1.1.0/selection.index/man/sel.score.rank.Rd | 48 +- selection.index-1.1.0/selection.index/man/seldata.Rd | 58 +- selection.index-1.1.0/selection.index/man/weight.Rd | 44 - selection.index-1.1.0/selection.index/man/weight.mat.Rd | 40 - selection.index-1.1.0/selection.index/tests/testthat/test-comb.indices.R |only selection.index-1.1.0/selection.index/vignettes/Examples.Rmd | 42 - 23 files changed, 389 insertions(+), 363 deletions(-)
More information about selection.index at CRAN
Permanent link
Title: Generalized Pairwise Comparisons
Description: Implementation of the Generalized Pairwise Comparisons (GPC)
as defined in Buyse (2010) <doi:10.1002/sim.3923> for complete observations,
and extended in Peron (2018) <doi:10.1177/0962280216658320> to deal with right-censoring.
GPC compare two groups of observations (intervention vs. control group)
regarding several prioritized endpoints to estimate the probability that a random observation drawn from
one group performs better than a random observation drawn from the other group (Mann-Whitney parameter).
The net benefit and win ratio statistics,
i.e. the difference and ratio between the probabilities relative to the intervention and control groups,
can then also be estimated. Confidence intervals and p-values are obtained using permutations, a non-parametric bootstrap, or the asymptotic theory.
The software enables the use of thresholds of minimal importance difference,
stratification, non-prioritized endpoints (O'Brien test), and can handle right-censoring and competing-risks.
Author: Brice Ozenne [aut, cre] (<https://orcid.org/0000-0001-9694-2956>),
Julien Peron [ctb],
Eva Cantagallo [aut]
Maintainer: Brice Ozenne <brice.mh.ozenne@gmail.com>
Diff between BuyseTest versions 2.2.6 dated 2021-03-16 and 2.3.0 dated 2021-04-23
DESCRIPTION | 22 MD5 | 223 +-- NAMESPACE | 133 +- NEWS | 371 ++--- R/0-onLoad.R | 16 R/1-setGeneric.R | 118 - R/BuyseTTEM.R | 1290 +++++++++---------- R/BuyseTest-Peron.R | 630 ++++----- R/BuyseTest-check.R | 916 ++++++------- R/BuyseTest-inference.R | 882 ++++++------- R/BuyseTest-initialization.R | 1355 ++++++++++---------- R/BuyseTest-package.R | 91 - R/BuyseTest-print.R | 316 ++-- R/BuyseTest.R | 1354 ++++++++++---------- R/BuyseTest.options.R | 208 +-- R/PairScore.R | 106 - R/RcppExports.R | 414 +++--- R/S4-BuysePower-show.R | 88 - R/S4-BuysePower-summary.R | 402 +++--- R/S4-BuysePower.R | 134 +- R/S4-BuyseTest-coef.R | 306 ++-- R/S4-BuyseTest-confint.R | 1518 +++++++++++----------- R/S4-BuyseTest-get.R | 1287 +++++++++---------- R/S4-BuyseTest-sensitivity.R |only R/S4-BuyseTest-show.R | 98 - R/S4-BuyseTest-summary.R | 1056 +++++++-------- R/S4-BuyseTest.R | 541 ++++---- R/S4-BuyseTest.options.R | 424 +++--- R/auc.R | 584 ++++---- R/constStrata.R | 176 +- R/discreteRoot.R | 532 ++++---- R/iid.prodlim.R | 372 ++--- R/normexp.R | 416 +++--- R/powerBuyseTest.R | 956 +++++++------- R/simBuyseTest.R | 1076 ++++++++-------- R/simCompetingRisks.R | 282 ++-- R/valid.R | 950 +++++++------- build/vignette.rds |binary inst/CITATION | 96 - inst/doc/overview.pdf |binary inst/doc/overview.pdf.asis | 10 inst/optim-iid/FCT_calcOnePair.h | 1724 +++++++++++++------------- man/BuyseTTEM.Rd | 148 +- man/BuyseTest-package.Rd | 74 - man/BuyseTest.Rd | 582 ++++---- man/BuyseTest.options-class.Rd | 36 man/BuyseTest.options-methods.Rd | 44 man/BuyseTest.options.Rd | 70 - man/GPC_cpp.Rd | 336 ++--- man/S4BuysePower-class.Rd | 36 man/S4BuysePower-show.Rd | 50 man/S4BuysePower-summary.Rd | 118 - man/S4BuyseTest-class.Rd | 36 man/S4BuyseTest-coef.Rd | 96 - man/S4BuyseTest-confint.Rd | 224 +-- man/S4BuyseTest-getCount.Rd | 56 man/S4BuyseTest-getIid.Rd | 94 - man/S4BuyseTest-getPairScore.Rd | 286 ++-- man/S4BuyseTest-getPseudovalue.Rd | 138 +- man/S4BuyseTest-getSurvival.Rd | 116 - man/S4BuyseTest-sensitivity.Rd |only man/S4BuyseTest-show.Rd | 50 man/S4BuyseTest-summary.Rd | 284 ++-- man/auc.Rd | 140 +- man/autoplot.sensitivity.Rd |only man/boot2pvalue.Rd | 170 +- man/calcIntegralSurv2_cpp.Rd | 94 - man/coef.BuyseTestAuc.Rd | 38 man/confint.BuyseTestAuc.Rd | 38 man/constStrata.Rd | 120 - man/discreteRoot.Rd | 62 man/dot-calcIntegralCif_cpp.Rd | 98 - man/dot-calcIntegralSurv_cpp.Rd | 84 - man/dot-colCenter_cpp.Rd | 38 man/dot-colMultiply_cpp.Rd | 38 man/dot-colScale_cpp.Rd | 38 man/dot-rowCenter_cpp.Rd | 38 man/dot-rowCumProd_cpp.Rd | 34 man/dot-rowCumSum_cpp.Rd | 34 man/dot-rowMultiply_cpp.Rd | 38 man/dot-rowScale_cpp.Rd | 38 man/iid.prodlim.Rd | 82 - man/internal-initialization.Rd | 242 +-- man/internal-print.Rd | 82 - man/pnormexp.Rd | 58 man/pnormweibull.Rd | 64 man/powerBuyseTest.Rd | 206 +-- man/predict.BuyseTTEM.Rd | 52 man/qnormexp.Rd | 46 man/qnormweibull.Rd | 76 - man/simCompetingRisks.Rd | 208 +-- man/simulation.Rd | 292 ++-- man/testArgs.Rd | 86 - man/validFCTs.Rd | 310 ++-- tests/testthat.R | 81 - tests/testthat/test-BuysePower.R | 394 ++--- tests/testthat/test-BuyseTTEM.R | 504 +++---- tests/testthat/test-BuyseTest-CR.R | 466 +++---- tests/testthat/test-BuyseTest-PairScore.R | 238 +-- tests/testthat/test-BuyseTest-Pairs.R | 1194 +++++++++--------- tests/testthat/test-BuyseTest-checkValues.R | 1002 +++++++-------- tests/testthat/test-BuyseTest-correctionTTE.R | 446 +++--- tests/testthat/test-BuyseTest-engine.R | 208 +-- tests/testthat/test-BuyseTest-iid.R | 1432 ++++++++++----------- tests/testthat/test-BuyseTest-neutralAsUnif.R | 204 +-- tests/testthat/test-BuyseTest-operator.R | 199 +-- tests/testthat/test-BuyseTest-previousBug.R | 988 +++++++------- tests/testthat/test-BuyseTest-resampling.R | 1198 +++++++++--------- tests/testthat/test-auc.R | 170 +- tests/testthat/test-initSurvival.R | 438 +++--- tests/testthat/test-initThreshold.R | 168 +- tests/testthat/test-otherPackages.R | 296 ++-- vignettes/overview.pdf.asis | 10 vignettes/vignette_CR.Rmd | 146 +- 114 files changed, 18617 insertions(+), 18456 deletions(-)
Title: Functions to Work with NCBI Accessions and Taxonomy
Description: Functions for assigning taxonomy to NCBI accession numbers and taxon IDs based on NCBI's accession2taxid and taxdump files. This package allows the user to downloads NCBI data dumps and create a local database for fast and local taxonomic assignment.
Author: Scott Sherrill-Mix [aut, cre]
Maintainer: Scott Sherrill-Mix <shescott@upenn.edu>
Diff between taxonomizr versions 0.6.0 dated 2021-02-08 and 0.7.1 dated 2021-04-23
taxonomizr-0.6.0/taxonomizr/tests/testthat/fakeNamesNodes.tar.gz |only taxonomizr-0.7.1/taxonomizr/DESCRIPTION | 8 taxonomizr-0.7.1/taxonomizr/MD5 | 31 +- taxonomizr-0.7.1/taxonomizr/NAMESPACE | 1 taxonomizr-0.7.1/taxonomizr/R/taxa.R | 153 ++++++++-- taxonomizr-0.7.1/taxonomizr/README.md | 60 +++ taxonomizr-0.7.1/taxonomizr/build/vignette.rds |binary taxonomizr-0.7.1/taxonomizr/inst/doc/usage.R | 3 taxonomizr-0.7.1/taxonomizr/inst/doc/usage.Rmd | 59 +++ taxonomizr-0.7.1/taxonomizr/inst/doc/usage.html | 76 ++++ taxonomizr-0.7.1/taxonomizr/inst/testdata |only taxonomizr-0.7.1/taxonomizr/man/getRawTaxonomy.Rd |only taxonomizr-0.7.1/taxonomizr/man/prepareDatabase.Rd | 10 taxonomizr-0.7.1/taxonomizr/man/read.accession2taxid.Rd | 2 taxonomizr-0.7.1/taxonomizr/man/taxonomizr-package.Rd | 2 taxonomizr-0.7.1/taxonomizr/man/taxonomizrSwitch.Rd | 4 taxonomizr-0.7.1/taxonomizr/tests/testthat/test_taxa.R | 110 ++++++- taxonomizr-0.7.1/taxonomizr/vignettes/usage.Rmd | 59 +++ 18 files changed, 514 insertions(+), 64 deletions(-)
Title: Utilities for Scheduling Functions to Execute Later with Event
Loops
Description: Executes arbitrary R or C functions some time after the current
time, after the R execution stack has emptied. The functions are scheduled
in an event loop.
Author: Winston Chang [aut, cre],
Joe Cheng [aut],
RStudio [cph],
Marcus Geelnard [ctb, cph] (TinyCThread library,
https://tinycthread.github.io/),
Evan Nemerson [ctb, cph] (TinyCThread library,
https://tinycthread.github.io/)
Maintainer: Winston Chang <winston@rstudio.com>
Diff between later versions 1.1.0.1 dated 2020-06-05 and 1.2.0 dated 2021-04-23
DESCRIPTION | 25 +- LICENSE |only MD5 | 51 ++--- NEWS.md | 10 + R/RcppExports.R | 4 README.md | 11 - build/vignette.rds |binary configure | 9 inst/doc/later-cpp.html | 407 ++++++++++++++++++------------------------ inst/include/later.h | 15 + src/Makevars.in | 2 src/RcppExports.cpp | 10 + src/callback_registry.cpp | 41 +--- src/callback_registry.h | 19 - src/callback_registry_table.h | 13 - src/debug.cpp | 10 + src/init.c | 6 src/later.cpp | 10 - src/later.h | 8 src/later_posix.cpp | 66 +++++- src/later_win32.cpp | 4 src/optional.h | 21 +- src/threadutils.h | 26 +- src/timer_posix.cpp | 10 - src/timer_posix.h | 12 - src/timestamp.h | 10 - tests/testthat/test-run_now.R | 9 27 files changed, 438 insertions(+), 371 deletions(-)
Title: Easily Work with 'Font Awesome' Icons
Description: Easily and flexibly insert 'Font Awesome' icons into 'R Markdown'
documents and 'Shiny' apps. These icons can be inserted into HTML content
through inline 'SVG' tags or 'i' tags. There is also a utility function for
exporting 'Font Awesome' icons as 'PNG' images for those situations where
raster graphics are needed.
Author: Richard Iannone [aut, cre] (<https://orcid.org/0000-0003-3925-190X>),
Christophe Dervieux [ctb] (<https://orcid.org/0000-0003-4474-2498>),
Winston Chang [ctb],
Dave Gandy [ctb, cph] (Font-Awesome font),
RStudio [cph, fnd]
Maintainer: Richard Iannone <rich@rstudio.com>
Diff between fontawesome versions 0.2.0 dated 2021-03-28 and 0.2.1 dated 2021-04-23
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/fa.R | 24 +++++++++++++----------- man/fa.Rd | 15 ++++++++------- tests/testthat/test-fa_icon.R | 4 ++-- 6 files changed, 35 insertions(+), 28 deletions(-)
Title: RUV-III-C
Description: Variations of Remove Unwanted Variation-III (RUV-III) known as RUV-III-C (RUV-III Complete). RUV-III performs normalisation using negative control variables and replication. RUV-III-C extends this method to cases where the data contains missing values, by applying RUV-III to complete subsets of the data. Originally designed for SWATH-MS proteomics datasets.
Poulos et al. (2020) <doi:10.1038/s41467-020-17641-3>.
Author: Rohan Shah [aut, cre],
Sean Peters [ctb],
Qing Zhong [ctb],
Children's Medical Research Institute [cph]
Maintainer: Rohan Shah <rshah@cmri.org.au>
Diff between RUVIIIC versions 1.0.18 dated 2021-04-10 and 1.0.19 dated 2021-04-23
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- src/RUVIIIC.cpp | 2 +- src/RUVIIIC_Varying.cpp | 2 +- 4 files changed, 9 insertions(+), 9 deletions(-)
Title: Quantile-Quantile Plot Extensions for 'ggplot2'
Description: Extensions of 'ggplot2' Q-Q plot functionalities.
Author: Alexandre Almeida [aut],
Adam Loy [aut, cre],
Heike Hofmann [aut]
Maintainer: Adam Loy <loyad01@gmail.com>
Diff between qqplotr versions 0.0.4 dated 2020-02-04 and 0.0.5 dated 2021-04-23
qqplotr-0.0.4/qqplotr/README.md |only qqplotr-0.0.5/qqplotr/DESCRIPTION | 12 qqplotr-0.0.5/qqplotr/MD5 | 74 - qqplotr-0.0.5/qqplotr/NEWS.md | 6 qqplotr-0.0.5/qqplotr/R/stat_pp_point.R | 8 qqplotr-0.0.5/qqplotr/R/stat_qq_band.R | 4 qqplotr-0.0.5/qqplotr/R/stat_qq_line.R | 2 qqplotr-0.0.5/qqplotr/R/stat_qq_point.R | 17 qqplotr-0.0.5/qqplotr/build/vignette.rds |binary qqplotr-0.0.5/qqplotr/inst/CITATION | 21 qqplotr-0.0.5/qqplotr/inst/doc/introduction.Rmd | 6 qqplotr-0.0.5/qqplotr/inst/doc/introduction.html | 450 +++------- qqplotr-0.0.5/qqplotr/man/GeomQqBand.Rd | 4 qqplotr-0.0.5/qqplotr/man/StatPpBand.Rd | 4 qqplotr-0.0.5/qqplotr/man/StatPpLine.Rd | 4 qqplotr-0.0.5/qqplotr/man/StatPpPoint.Rd | 4 qqplotr-0.0.5/qqplotr/man/StatQqBand.Rd | 4 qqplotr-0.0.5/qqplotr/man/StatQqLine.Rd | 4 qqplotr-0.0.5/qqplotr/man/StatQqPoint.Rd | 4 qqplotr-0.0.5/qqplotr/man/figures/README-unnamed-chunk-10-1.png |binary qqplotr-0.0.5/qqplotr/man/figures/README-unnamed-chunk-11-1.png |binary qqplotr-0.0.5/qqplotr/man/figures/README-unnamed-chunk-12-1.png |binary qqplotr-0.0.5/qqplotr/man/figures/README-unnamed-chunk-13-1.png |binary qqplotr-0.0.5/qqplotr/man/figures/README-unnamed-chunk-14-1.png |binary qqplotr-0.0.5/qqplotr/man/figures/README-unnamed-chunk-6-1.png |binary qqplotr-0.0.5/qqplotr/man/figures/README-unnamed-chunk-7-1.png |binary qqplotr-0.0.5/qqplotr/man/figures/README-unnamed-chunk-8-1.png |binary qqplotr-0.0.5/qqplotr/man/figures/README-unnamed-chunk-9-1.png |binary qqplotr-0.0.5/qqplotr/man/figures/logo.png |only qqplotr-0.0.5/qqplotr/man/iowa.Rd | 6 qqplotr-0.0.5/qqplotr/man/longjump.Rd | 6 qqplotr-0.0.5/qqplotr/man/qqplotr.Rd | 1 qqplotr-0.0.5/qqplotr/man/stat_pp_band.Rd | 32 qqplotr-0.0.5/qqplotr/man/stat_pp_line.Rd | 27 qqplotr-0.0.5/qqplotr/man/stat_pp_point.Rd | 31 qqplotr-0.0.5/qqplotr/man/stat_qq_band.Rd | 72 + qqplotr-0.0.5/qqplotr/man/stat_qq_line.Rd | 35 qqplotr-0.0.5/qqplotr/man/stat_qq_point.Rd | 35 qqplotr-0.0.5/qqplotr/vignettes/introduction.Rmd | 6 39 files changed, 421 insertions(+), 458 deletions(-)
Title: Estimation and Prediction Methods for High-Dimensional Mixed
Frequency Time Series Data
Description: The 'midasml' package implements estimation and prediction methods for high-dimensional mixed-frequency (MIDAS) time-series and panel data regression models. The regularized MIDAS models are estimated using orthogonal (e.g. Legendre) polynomials and sparse-group LASSO (sg-LASSO) estimator. For more information on the `midasml' approach see Babii, Ghysels, and Striaukas (2021, JBES forthcoming) <doi:10.1080/07350015.2021.1899933>. The package is equipped with the fast implementation of the sg-LASSO estimator by means of proximal block coordinate descent. High-dimensional mixed frequency time-series data can also be easily manipulated with functions provided in the package.
Author: Jonas Striaukas [cre, aut],
Andrii Babii [aut],
Eric Ghysels [aut],
Alex Kostrov [ctb] (Contributions to analytical gradients for
non-linear low-dimensional MIDAS estimation code)
Maintainer: Jonas Striaukas <jonas.striaukas@gmail.com>
Diff between midasml versions 0.1.3 dated 2021-04-22 and 0.1.4 dated 2021-04-23
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/sglfit.R | 2 +- man/sglfit.Rd | 2 +- src/maxlambda.f90 | 6 +++--- src/sglfitF.f90 | 12 ++++++------ 6 files changed, 19 insertions(+), 19 deletions(-)
Title: Markov Chain-Based Cost-Optimal Control Charts
Description: Functions for cost-optimal control charts with a focus on health care applications. Compared to assumptions in traditional control chart theory, here, we allow random shift sizes, random repair and random sampling times. The package focuses on X-bar charts with a sample size of 1 (representing the monitoring of a single patient at a time). The methods are described in Zempleni et al. (2004) <doi:10.1002/asmb.521>, Dobi and Zempleni (2019) <doi:10.1002/qre.2518> and Dobi and Zempleni (2019) <http://ac.inf.elte.hu/Vol_049_2019/129_49.pdf>.
Author: Balazs Dobi & Andras Zempleni
Maintainer: Balazs Dobi <dobibalazs@inf.elte.hu>
Diff between Markovchart versions 1.1.1 dated 2020-12-16 and 2.0.0 dated 2021-04-23
Markovchart-1.1.1/Markovchart/R/Markovchart_functions_20201216.r |only Markovchart-1.1.1/Markovchart/man/Markovcontour.Rd |only Markovchart-2.0.0/Markovchart/DESCRIPTION | 9 Markovchart-2.0.0/Markovchart/MD5 | 13 Markovchart-2.0.0/Markovchart/NAMESPACE | 4 Markovchart-2.0.0/Markovchart/R/Markovchart_functions_20210310.r |only Markovchart-2.0.0/Markovchart/man/Markovchart.Rd | 167 ++-------- Markovchart-2.0.0/Markovchart/man/Markovsim.Rd | 14 Markovchart-2.0.0/Markovchart/man/Markovstat.Rd |only Markovchart-2.0.0/Markovchart/man/plot.Markov_grid.Rd |only 10 files changed, 69 insertions(+), 138 deletions(-)
Title: KMunicate-Style Kaplan–Meier Plots
Description: Produce Kaplan–Meier plots in the style recommended
following the KMunicate study by Morris et al. (2019)
<doi:10.1136/bmjopen-2019-030215>. The KMunicate style consists of
Kaplan-Meier curves with confidence intervals to quantify uncertainty
and an extended risk table (per treatment arm) depicting the number of
study subjects at risk, events, and censored observations over time.
The resulting plots are built using 'ggplot2' and can be further
customised to a certain extent, including themes, fonts, and colour
scales.
Author: Alessandro Gasparini [aut, cre, cph]
(<https://orcid.org/0000-0002-8319-7624>),
Ary Serpa Neto [ctb]
Maintainer: Alessandro Gasparini <alessandro.gasparini@ki.se>
Diff between KMunicate versions 0.2.0 dated 2020-11-16 and 0.2.1 dated 2021-04-23
DESCRIPTION | 55 ++-- MD5 | 36 +- NEWS.md | 6 README.md | 8 build/partial.rdb |binary build/vignette.rds |binary inst/doc/KMunicate.R | 13 - inst/doc/KMunicate.Rmd | 20 - inst/doc/KMunicate.html | 343 ++++------------------------ man/figures/README-brcancer-1.png |binary man/figures/README-brcancer-KMunicate-1.png |binary man/figures/README-brcancer-NULL-1.png |binary man/figures/README-brcancer-reverse-1.png |binary man/figures/README-brcancer-survfit-1.png |binary man/figures/README-cancer-1.png |binary man/figures/README-cancer-single-1.png |binary man/figures/README-cancer-single-ff-1.png |binary tests/testthat/test-output.R | 12 vignettes/KMunicate.Rmd | 20 - 19 files changed, 130 insertions(+), 383 deletions(-)
Title: Identification of Parental Lines via Genomic Prediction
Description: Combining genomic prediction with Monte Carlo simulation, three different
strategies are implemented to select parental lines for multiple traits in plant
breeding. The selection strategies include (i) GEBV-O considers only genomic
estimated breeding values (GEBVs) of the candidate individuals; (ii) GD-O
considers only genomic diversity (GD) of the candidate individuals; and (iii)
GEBV-GD considers both GEBV and GD. The above method can be seen in Chung PY,
Liao CT (2020) <doi:10.1371/journal.pone.0243159>. Multi-trait genomic best
linear unbiased prediction (MT-GBLUP) model is used to simultaneously estimate
GEBVs of the target traits, and then a selection index is adopted to evaluate
the composite performance of an individual.
Author: Ping-Yuan Chung [cre],
Chen-Tuo Liao [aut]
Maintainer: Ping-Yuan Chung <r06621204@ntu.edu.tw>
Diff between IPLGP versions 1.1.0 dated 2021-04-20 and 1.2.0 dated 2021-04-23
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- R/output.best.R | 2 +- R/simu.GDO.R | 5 +++-- R/simu.GEBVGD.R | 5 +++-- R/simu.GEBVO.R | 5 +++-- man/simu.GDO.Rd | 2 +- man/simu.GEBVGD.Rd | 2 +- man/simu.GEBVO.Rd | 2 +- 9 files changed, 24 insertions(+), 21 deletions(-)
Title: Easy Use of 'GADM' Maps
Description: Manipulate, assemble, export <https://gadm.org/> maps. Create 'choropleth', 'isopleth', dots plot, proportional dots,
dot-density and more.
Author: Jean Pierre Decorps [aut, cre]
Maintainer: Jean Pierre Decorps <jean.pierre.decorps@gmail.com>
Diff between GADMTools versions 3.8-1 dated 2020-03-05 and 3.8-2 dated 2021-04-23
DESCRIPTION | 8 MD5 | 28 NEWS | 5 README.md | 8 inst/doc/GADMTools_GRAPHICS.R | 8 inst/doc/GADMTools_GRAPHICS.pdf |binary inst/doc/GADMTools_ISO_3166-1_alpha-3.R | 6 inst/doc/GADMTools_ISO_3166-1_alpha-3.Rmd | 4 inst/doc/GADMTools_ISO_3166-1_alpha-3.pdf | 440 +-- inst/doc/GADMTools_Manipulating_Shapefiles.R | 36 inst/doc/GADMTools_Manipulating_Shapefiles.Rmd | 12 inst/doc/GADMTools_Manipulating_Shapefiles.pdf | 3227 ++++++++++++------------ man/GADMTools-package.Rd | 4 vignettes/GADMTools_ISO_3166-1_alpha-3.Rmd | 4 vignettes/GADMTools_Manipulating_Shapefiles.Rmd | 12 15 files changed, 2011 insertions(+), 1791 deletions(-)
Title: Efficient Determination of Sample Size in Balanced Design of
Experiments
Description: For a balanced design of experiments, this package calculates the sample size required to detect a certain standardized effect size, under a significance level. This package also provides three graphs; detectable standardized effect size vs power, sample size vs detectable standardized effect size, and sample size vs power, which show the mutual relationship between the sample size, power and the detectable standardized effect size. The detailed procedure is described in R. V. Lenth (2006-9) <https://homepage.divms.uiowa.edu/~rlenth/Power/>, Y. B. Lim (1998), M. A. Kastenbaum, D. G. Hoel and K. O. Bowman (1970) <doi:10.2307/2334851>, and Douglas C. Montgomery (2013, ISBN: 0849323312).
Author: Jong Hee Chung [aut, cre],
Yong Bin Lim [aut],
Donghoh Kim [ctb]
Maintainer: Jong Hee Chung <jochung947@gmail.com>
Diff between BDEsize versions 1.2 dated 2019-11-01 and 1.5 dated 2021-04-23
BDEsize-1.2/BDEsize/R/BDEsizeApp.R |only BDEsize-1.2/BDEsize/man/BDEsizeApp.Rd |only BDEsize-1.2/BDEsize/man/fsize.Rd |only BDEsize-1.2/BDEsize/man/sizelist.Rd |only BDEsize-1.2/BDEsize/man/sizelist.split.Rd |only BDEsize-1.5/BDEsize/DESCRIPTION | 27 - BDEsize-1.5/BDEsize/MD5 | 48 +- BDEsize-1.5/BDEsize/NAMESPACE | 19 - BDEsize-1.5/BDEsize/R/Size.2levFr.R | 192 +++++----- BDEsize-1.5/BDEsize/R/Size.Block.R | 199 ++++------- BDEsize-1.5/BDEsize/R/Size.Full.R | 197 ++++------- BDEsize-1.5/BDEsize/R/Size.Split.R | 285 +++++++--------- BDEsize-1.5/BDEsize/R/fsize.R | 40 -- BDEsize-1.5/BDEsize/R/plots.2levFr.R | 319 +++++++----------- BDEsize-1.5/BDEsize/R/plots.Block.R | 366 ++++++++++---------- BDEsize-1.5/BDEsize/R/plots.Full.R | 366 ++++++++++---------- BDEsize-1.5/BDEsize/R/plots.Split.R | 489 +++++++++++++++------------- BDEsize-1.5/BDEsize/R/sizelist.R | 68 --- BDEsize-1.5/BDEsize/R/sizelist.split.R | 121 +----- BDEsize-1.5/BDEsize/man/BDEsize-internal.Rd |only BDEsize-1.5/BDEsize/man/Size.2levFr.Rd | 85 ++-- BDEsize-1.5/BDEsize/man/Size.Block.Rd | 86 ++-- BDEsize-1.5/BDEsize/man/Size.Full.Rd | 80 ++-- BDEsize-1.5/BDEsize/man/Size.Split.Rd | 95 ++--- BDEsize-1.5/BDEsize/man/plots.2levFr.Rd | 66 +-- BDEsize-1.5/BDEsize/man/plots.Block.Rd | 88 ++--- BDEsize-1.5/BDEsize/man/plots.Full.Rd | 87 ++-- BDEsize-1.5/BDEsize/man/plots.Split.Rd | 77 ++-- 28 files changed, 1576 insertions(+), 1824 deletions(-)
Title: Basic R Input Output
Description: Functions to handle basic input output, these functions always
read and write UTF-8 (8-bit Unicode Transformation Format) files and provide
more explicit control over line endings.
Author: Jim Hester [aut, cre] (<https://orcid.org/0000-0002-2739-7082>),
RStudio [cph, fnd]
Maintainer: Jim Hester <jim.hester@rstudio.com>
Diff between brio versions 1.1.1 dated 2021-01-20 and 1.1.2 dated 2021-04-23
DESCRIPTION | 7 +++---- MD5 | 23 ++++++++++++----------- NEWS.md | 6 ++++++ README.md | 28 ++++++++++++++++------------ src/brio.c | 15 ++++++++------- src/brio.h | 4 ++-- src/file_line_endings.c | 6 ++---- src/read_file.c | 17 ++++++++++------- src/read_file_raw.c | 20 +++++++++++++------- src/read_lines.c | 17 ++++++++++++----- src/write_file.c | 6 ++---- src/write_lines.c | 6 ++---- tests/testthat/test-utf8.R |only 13 files changed, 88 insertions(+), 67 deletions(-)
More information about materialmodifier at CRAN
Permanent link
Title: 'NetCDF' Geometry and Time Series
Description: Tools to create time series and geometry 'NetCDF' files.
Author: David Blodgett [aut, cre],
Luke Winslow [ctb]
Maintainer: David Blodgett <dblodgett@usgs.gov>
Diff between ncdfgeom versions 1.1.0 dated 2019-08-28 and 1.1.1 dated 2021-04-23
DESCRIPTION | 17 MD5 | 64 NEWS.md | 12 R/read_timeseries_dsg.R | 463 +++---- R/write_attribute_data.R | 4 R/write_geometry.R | 2 R/write_point_dsg.R | 228 +-- R/write_timeseries_dsg.R | 486 +++---- README.md | 100 - build/vignette.rds |binary inst/doc/geometry.R | 94 - inst/doc/geometry.Rmd | 166 +- inst/doc/geometry.html | 1561 ++++++++++-------------- inst/doc/ncdfgeom.R | 430 +++--- inst/doc/ncdfgeom.Rmd | 584 ++++---- inst/doc/ncdfgeom.html | 1196 +++++++----------- inst/doc/timeseries.R | 162 +- inst/doc/timeseries.html | 773 ++++------- man/read_timeseries_dsg.Rd | 6 man/write_attribute_data.Rd | 11 man/write_geometry.Rd | 10 man/write_timeseries_dsg.Rd | 26 tests/testthat/data/geom_examples.md | 816 ++++++------ tests/testthat/helper-functions.R | 264 ++-- tests/testthat/test_check_ncdf.R | 3 tests/testthat/test_geom_examples.R | 78 - tests/testthat/test_line.R | 2 tests/testthat/test_poly.R | 500 +++---- tests/testthat/test_read-write_timeseries_dsg.R | 658 +++++----- vignettes/geometry.Rmd | 166 +- vignettes/geometry_cache |only vignettes/ncdfgeom.Rmd | 584 ++++---- 32 files changed, 4543 insertions(+), 4923 deletions(-)
Title: Shadow Text Grob and Layer
Description: Implement shadowtextGrob() for 'grid' and geom_shadowtext() layer for 'ggplot2'.
These functions create/draw text grob with background shadow.
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between shadowtext versions 0.0.7 dated 2019-11-06 and 0.0.8 dated 2021-04-23
DESCRIPTION | 11 ++-- MD5 | 14 ++--- build/vignette.rds |binary inst/doc/shadowtext.R | 8 +-- inst/doc/shadowtext.html | 115 +++++++++++++++++++++++----------------------- man/element_shadowtext.Rd | 18 +++++-- man/geom_shadowtext.Rd | 18 +++++-- man/shadowtextGrob.Rd | 43 +++++++++++++---- 8 files changed, 135 insertions(+), 92 deletions(-)
Title: Scatter Pie Plot
Description: Creates scatterpie plots, especially useful for plotting pies on a map.
Author: Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>)
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between scatterpie versions 0.1.5 dated 2020-09-09 and 0.1.6 dated 2021-04-23
DESCRIPTION | 9 +-- MD5 | 6 +- build/vignette.rds |binary inst/doc/scatterpie.html | 141 ++++++++++++++++++----------------------------- 4 files changed, 61 insertions(+), 95 deletions(-)
Title: Indices and Graphics for Assess Seed Germination Process
Description: A collection of different indices and visualization techniques for evaluate the seed germination process in ecophysiological studies (Lozano-Isla et al. 2019) <doi:10.1111/1440-1703.1275>.
Author: Flavio Lozano-Isla [aut, cre] (<https://orcid.org/0000-0002-0714-669X>),
Omar Benites Alfaro [aut] (<https://orcid.org/0000-0002-6852-9598>),
Denise Garcia de Santana [aut],
Marli A. Ranal [aut],
Marcelo F. Pompelli [aut, ths]
(<https://orcid.org/0000-0002-4408-6374>),
Federal University of Pernambuco [cph] (Register of application),
Federal Rural University of Pernambuco [cph] (Post Graduate Program)
Maintainer: Flavio Lozano-Isla <flavjack@gmail.com>
Diff between GerminaR versions 2.0.1 dated 2020-10-25 and 2.1.1 dated 2021-04-23
GerminaR-2.0.1/GerminaR/inst/doc/coding.R |only GerminaR-2.0.1/GerminaR/inst/doc/coding.Rmd |only GerminaR-2.0.1/GerminaR/inst/doc/coding.html |only GerminaR-2.0.1/GerminaR/vignettes/coding.Rmd |only GerminaR-2.1.1/GerminaR/DESCRIPTION | 16 GerminaR-2.1.1/GerminaR/LICENSE | 4 GerminaR-2.1.1/GerminaR/MD5 | 81 GerminaR-2.1.1/GerminaR/NAMESPACE | 27 GerminaR-2.1.1/GerminaR/NEWS.md | 34 GerminaR-2.1.1/GerminaR/R/GerminaQuant.R | 27 GerminaR-2.1.1/GerminaR/R/fplot.R | 450 +- GerminaR-2.1.1/GerminaR/R/ger_boxp.R | 181 - GerminaR-2.1.1/GerminaR/R/ger_indices.R | 620 +-- GerminaR-2.1.1/GerminaR/R/ger_intime.R | 204 - GerminaR-2.1.1/GerminaR/R/ger_summary.R | 6 GerminaR-2.1.1/GerminaR/R/ger_testcomp.R | 260 - GerminaR-2.1.1/GerminaR/R/osmp.R | 88 GerminaR-2.1.1/GerminaR/R/prosopis.R | 38 GerminaR-2.1.1/GerminaR/R/utils.R | 34 GerminaR-2.1.1/GerminaR/R/webTable.R |only GerminaR-2.1.1/GerminaR/README.md | 13 GerminaR-2.1.1/GerminaR/build/vignette.rds |binary GerminaR-2.1.1/GerminaR/inst/CITATION | 42 GerminaR-2.1.1/GerminaR/inst/GerminaQuant/pkgs.R |only GerminaR-2.1.1/GerminaR/inst/GerminaQuant/rsconnect/shinyapps.io/flavjack/germinaquant.dcf | 4 GerminaR-2.1.1/GerminaR/inst/GerminaQuant/server.R | 624 +-- GerminaR-2.1.1/GerminaR/inst/GerminaQuant/ui.R | 802 ++-- GerminaR-2.1.1/GerminaR/inst/GerminaQuant/www/analytics.html | 17 GerminaR-2.1.1/GerminaR/inst/GerminaQuant/www/custom.css | 10 GerminaR-2.1.1/GerminaR/inst/doc/GerminaQuant.R |only GerminaR-2.1.1/GerminaR/inst/doc/GerminaQuant.Rmd |only GerminaR-2.1.1/GerminaR/inst/doc/GerminaQuant.html |only GerminaR-2.1.1/GerminaR/inst/doc/GerminaR.R | 297 + GerminaR-2.1.1/GerminaR/inst/doc/GerminaR.Rmd | 304 + GerminaR-2.1.1/GerminaR/inst/doc/GerminaR.html | 1716 +++++++--- GerminaR-2.1.1/GerminaR/inst/doc/intro.R |only GerminaR-2.1.1/GerminaR/inst/doc/intro.Rmd |only GerminaR-2.1.1/GerminaR/inst/doc/intro.html |only GerminaR-2.1.1/GerminaR/inst/rstudio/addins.dcf | 6 GerminaR-2.1.1/GerminaR/man/GerminaQuant.Rd | 13 GerminaR-2.1.1/GerminaR/man/fplot.Rd | 80 GerminaR-2.1.1/GerminaR/man/ger_boxp.Rd | 51 GerminaR-2.1.1/GerminaR/man/ger_summary.Rd | 4 GerminaR-2.1.1/GerminaR/man/webTable.Rd |only GerminaR-2.1.1/GerminaR/vignettes/GerminaQuant.Rmd |only GerminaR-2.1.1/GerminaR/vignettes/GerminaR.Rmd | 304 + GerminaR-2.1.1/GerminaR/vignettes/files/book.bib | 542 +-- GerminaR-2.1.1/GerminaR/vignettes/files/pkgs.bib | 738 ++-- GerminaR-2.1.1/GerminaR/vignettes/intro.Rmd |only 49 files changed, 4412 insertions(+), 3225 deletions(-)
Title: Landscape Visualizations in R and 'Unity'
Description: Functions for the retrieval, manipulation, and visualization of
'geospatial' data, with an aim towards producing '3D' landscape
visualizations in the 'Unity' '3D' rendering engine. Functions are also
provided for retrieving elevation data and base map tiles from the 'USGS'
National Map ('<https://apps.nationalmap.gov/services/>').
Author: Michael Mahoney [aut, cre] (<https://orcid.org/0000-0003-2402-304X>),
Mike Johnson [rev] (Mike reviewed the package (v. 0.2.1) for rOpenSci,
see <https://github.com/ropensci/software-review/issues/416>),
Sydney Foks [rev] (Sydney reviewed the package (v. 0.2.1) for rOpenSci,
see <https://github.com/ropensci/software-review/issues/416>)
Maintainer: Michael Mahoney <mike.mahoney.218@gmail.com>
Diff between terrainr versions 0.3.1 dated 2021-02-23 and 0.4.0 dated 2021-04-23
DESCRIPTION | 7 - MD5 | 42 +++---- NEWS.md | 36 ++++++ R/add_bbox_buffer.R | 2 R/calc_haversine_distance.R | 11 -- R/geom_spatial_rgb.R | 1 R/get_tiles.R | 53 +++++---- R/hit_api.R | 6 - R/merge_rasters.R | 143 +++++++++++++++++++++++++- R/vector_to_overlay.R | 34 ++---- README.md | 27 ++-- build/vignette.rds |binary inst/doc/overview.html | 9 + inst/doc/unity_instructions.Rmd | 2 inst/doc/unity_instructions.html | 11 +- man/calc_haversine_distance.Rd | 6 - man/get_tiles.Rd | 12 -- man/vector_to_overlay.Rd | 12 +- tests/testthat/test-2-get_tiles_3dep.R | 33 ++++++ tests/testthat/test-calc_haversine_distance.R | 11 -- tests/testthat/test-vector_to_overlay.R | 14 ++ vignettes/unity_instructions.Rmd | 2 22 files changed, 337 insertions(+), 137 deletions(-)
Title: Download and Merge Single-Cell RNA-Seq Data from the PanglaoDB
Database
Description: Download and merge labeled single-cell RNA-seq data from the PanglaoDB <https://panglaodb.se/> into a Seurat object.
Author: Daniel Osorio [aut, cre] (<https://orcid.org/0000-0003-4424-8422>),
Marieke Kuijjer [aut] (<https://orcid.org/0000-0001-6280-3130>),
James J. Cai [aut] (<https://orcid.org/0000-0002-8081-6725>)
Maintainer: Daniel Osorio <daniecos@uio.no>
Diff between rPanglaoDB versions 0.1.0 dated 2021-04-15 and 0.2.0 dated 2021-04-23
DESCRIPTION | 7 +- MD5 | 12 ++- R/getSamples.R | 33 ++++++++- README.md | 182 ++++++++++++++++++++++++++++++++++++++++++++++++++++-- inst |only man/getSamples.Rd | 6 + 6 files changed, 225 insertions(+), 15 deletions(-)
Title: 3D Visualization Using OpenGL
Description: Provides medium to high level functions for 3D interactive graphics, including
functions modelled on base graphics (plot3d(), etc.) as well as functions for
constructing representations of geometric objects (cube3d(), etc.). Output
may be on screen using OpenGL, or to various standard 3D file formats including
WebGL, PLY, OBJ, STL as well as 2D image formats, including PNG, Postscript, SVG, PGF.
Author: Duncan Murdoch [aut, cre],
Daniel Adler [aut],
Oleg Nenadic [ctb],
Simon Urbanek [ctb],
Ming Chen [ctb],
Albrecht Gebhardt [ctb],
Ben Bolker [ctb],
Gabor Csardi [ctb],
Adam Strzelecki [ctb],
Alexander Senger [ctb],
The R Core Team [ctb, cph],
Dirk Eddelbuettel [ctb],
The authors of Shiny [cph],
The authors of knitr [cph],
Jeroen Ooms [ctb],
Yohann Demont [ctb],
Joshua Ulrich [ctb],
Xavier Fernandez i Marin [ctb],
George Helffrich [ctb],
Ivan Krylov [ctb]
Maintainer: Duncan Murdoch <murdoch.duncan@gmail.com>
Diff between rgl versions 0.106.6 dated 2021-04-17 and 0.106.8 dated 2021-04-23
DESCRIPTION | 6 +-- MD5 | 28 +++++++------- NEWS.md | 16 ++++++++ R/clipMesh3d.R | 2 - R/merge.mesh3d.R | 22 ++++++++--- R/mesh3d.R | 19 +++++---- configure | 16 ++++---- configure.ac | 15 ++++--- inst/doc/WebGL.html | 26 ++++++------- inst/doc/pkgdown.html | 4 +- inst/doc/rgl.html | 36 +++++++++--------- inst/doc/transparency.html | 16 ++++---- inst/htmlwidgets/lib/CanvasMatrix/CanvasMatrix.min.js |only inst/htmlwidgets/lib/rglClass/rglClass.min.js |only src/Makevars.ucrt | 33 +++++----------- src/Makevars.win | 4 +- 16 files changed, 131 insertions(+), 112 deletions(-)
Title: Create Meme
Description: The word 'Meme' was originated from the book, 'The Selfish Gene', authored by Richard Dawkins (1976).
It is a unit of culture that is passed from one generation to another and correlates to the gene, the unit of physical heredity.
The internet memes are captioned photos that are intended to be funny, ridiculous.
Memes behave like infectious viruses and travel from person to person quickly through social media.
The 'meme' package allows users to make custom memes.
Author: Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>)
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between meme versions 0.2.2 dated 2019-08-05 and 0.2.3 dated 2021-04-23
DESCRIPTION | 11 +-- MD5 | 12 +-- build/vignette.rds |binary inst/doc/meme.R | 32 ++++----- inst/doc/meme.html | 188 ++++++++++++++++++++++++++--------------------------- man/meme.Rd | 15 +++- man/print.meme.Rd | 36 ++++++++-- 7 files changed, 163 insertions(+), 131 deletions(-)
Title: Download Stats of R Packages
Description: Monthly download stats of 'CRAN' and 'Bioconductor' packages.
Download stats of 'CRAN' packages is from the 'RStudio' 'CRAN mirror', see <https://cranlogs.r-pkg.org:443>.
'Bioconductor' package download stats is at <https://bioconductor.org/packages/stats/>.
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between dlstats versions 0.1.3 dated 2019-11-14 and 0.1.4 dated 2021-04-23
DESCRIPTION | 11 ++---- MD5 | 8 ++-- build/vignette.rds |binary inst/doc/dlstats.R | 8 ++-- inst/doc/dlstats.html | 91 +++++++++++++++++++++++++------------------------- 5 files changed, 59 insertions(+), 59 deletions(-)
Title: Embedded JavaScript and WebAssembly Engine for R
Description: An R interface to V8: Google's open source JavaScript and WebAssembly
engine. This package can be compiled either with V8 version 6 and up, a NodeJS
shared library, or the legacy 3.14/3.15 branch of V8.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between V8 versions 3.4.0 dated 2020-11-04 and 3.4.1 dated 2021-04-23
DESCRIPTION | 6 MD5 | 16 NEWS | 3 build/partial.rdb |binary build/vignette.rds |binary configure | 6 inst/doc/npm.html | 1392 +----------------------------------------------- inst/doc/v8_intro.html | 1394 +------------------------------------------------ src/bindings.cpp | 18 9 files changed, 93 insertions(+), 2742 deletions(-)
Title: Robust Multivariate Methods for High Dimensional Data
Description: Robust multivariate methods for high dimensional data including
outlier detection (Filzmoser and Todorov (2013) <doi:10.1016/j.ins.2012.10.017>),
robust sparse PCA (Croux et al. (2013) <doi:10.1080/00401706.2012.727746>, Todorov and Filzmoser (2013) <doi:10.1007/978-3-642-33042-1_31>),
robust PLS (Todorov and Filzmoser (2014) <doi:10.17713/ajs.v43i4.44>),
and robust sparse classification (Ortner et al. (2020) <doi:10.1007/s10618-019-00666-8>).
Author: Valentin Todorov [aut, cre] (<https://orcid.org/0000-0003-4215-0245>)
Maintainer: Valentin Todorov <valentin.todorov@chello.at>
Diff between rrcovHD versions 0.2-6 dated 2019-11-29 and 0.2-7 dated 2021-04-23
rrcovHD-0.2-6/rrcovHD/data/olitos.rda |only rrcovHD-0.2-6/rrcovHD/data/soil.rda |only rrcovHD-0.2-6/rrcovHD/man/olitos.Rd |only rrcovHD-0.2-6/rrcovHD/man/soil.Rd |only rrcovHD-0.2-7/rrcovHD/ChangeLog | 13 +++- rrcovHD-0.2-7/rrcovHD/DESCRIPTION | 18 +++--- rrcovHD-0.2-7/rrcovHD/MD5 | 63 ++++++++++------------ rrcovHD-0.2-7/rrcovHD/NAMESPACE | 1 rrcovHD-0.2-7/rrcovHD/build |only rrcovHD-0.2-7/rrcovHD/man/CSimca-class.Rd | 9 ++- rrcovHD-0.2-7/rrcovHD/man/CSimca.Rd | 9 ++- rrcovHD-0.2-7/rrcovHD/man/Outlier-class.Rd | 9 +-- rrcovHD-0.2-7/rrcovHD/man/OutlierMahdist-class.Rd | 14 +++- rrcovHD-0.2-7/rrcovHD/man/OutlierMahdist.Rd | 14 ++-- rrcovHD-0.2-7/rrcovHD/man/OutlierPCDist-class.Rd | 7 +- rrcovHD-0.2-7/rrcovHD/man/OutlierPCDist.Rd | 11 ++- rrcovHD-0.2-7/rrcovHD/man/OutlierPCOut-class.Rd | 7 +- rrcovHD-0.2-7/rrcovHD/man/OutlierPCOut.Rd | 7 +- rrcovHD-0.2-7/rrcovHD/man/OutlierSign1-class.Rd | 7 +- rrcovHD-0.2-7/rrcovHD/man/OutlierSign1.Rd | 7 +- rrcovHD-0.2-7/rrcovHD/man/OutlierSign2-class.Rd | 7 +- rrcovHD-0.2-7/rrcovHD/man/OutlierSign2.Rd | 7 +- rrcovHD-0.2-7/rrcovHD/man/PredictSimca-class.Rd | 13 +++- rrcovHD-0.2-7/rrcovHD/man/PredictSosDisc-class.Rd | 7 +- rrcovHD-0.2-7/rrcovHD/man/RSimca-class.Rd | 10 ++- rrcovHD-0.2-7/rrcovHD/man/RSimca.Rd | 5 + rrcovHD-0.2-7/rrcovHD/man/SPcaGrid-class.Rd | 20 +++++- rrcovHD-0.2-7/rrcovHD/man/SPcaGrid.Rd | 22 +++++-- rrcovHD-0.2-7/rrcovHD/man/Simca-class.Rd | 10 ++- rrcovHD-0.2-7/rrcovHD/man/SosDisc-class.Rd | 7 +- rrcovHD-0.2-7/rrcovHD/man/SosDiscClassic-class.Rd | 7 +- rrcovHD-0.2-7/rrcovHD/man/SosDiscRobust-class.Rd | 7 +- rrcovHD-0.2-7/rrcovHD/man/SosDiscRobust.Rd | 7 +- rrcovHD-0.2-7/rrcovHD/man/SummarySimca-class.Rd | 13 +++- rrcovHD-0.2-7/rrcovHD/man/SummarySosDisc-class.Rd | 7 +- 35 files changed, 215 insertions(+), 130 deletions(-)
Title: Pattern-Oriented Modeling Framework for Coupled Niche-Population
Paleo-Climatic Models
Description: This extension of the poems pattern-oriented modeling (POM) framework
provides a collection of modules and functions customized for paleontological
time-scales, and optimized for single-generation transitions and large populations,
across multiple generations.
Author: Sean Haythorne [aut],
Julia Pilowsky [aut, cre] (<https://orcid.org/0000-0002-6376-2585>)
Maintainer: Julia Pilowsky <julia.pilowsky@adelaide.edu.au>
Diff between paleopop versions 2.1.0 dated 2021-04-22 and 2.1.1 dated 2021-04-23
DESCRIPTION | 8 ++--- MD5 | 12 ++++---- NEWS.md | 7 ++++ README.md | 36 ++++++++++++------------ inst/doc/bison_example.html | 4 +- man/figures/README-paleosimulator_example-1.png |binary tests/testthat/test-PaleoPopResults.R | 1 7 files changed, 38 insertions(+), 30 deletions(-)
Title: Nonparametric Regression via Smoothing Splines
Description: Multiple and generalized nonparametric regression using smoothing spline ANOVA models and generalized additive models, as described in Helwig (2020) <doi:10.4135/9781526421036885885>. Includes support for Gaussian and non-Gaussian responses, smoothers for multiple types of predictors, interactions between smoothers of mixed types, and eight different methods for smoothing parameter selection.
Author: Nathaniel E. Helwig <helwig@umn.edu>
Maintainer: Nathaniel E. Helwig <helwig@umn.edu>
Diff between npreg versions 1.0-5 dated 2020-11-30 and 1.0-6 dated 2021-04-23
npreg-1.0-5/npreg/R/basis_nom.R |only npreg-1.0-5/npreg/R/basis_ord.R |only npreg-1.0-5/npreg/R/basis_poly.R |only npreg-1.0-5/npreg/R/basis_sph.R |only npreg-1.0-5/npreg/R/basis_tps.R |only npreg-1.0-5/npreg/R/bin_sample.R |only npreg-1.0-5/npreg/R/penalty_nom.R |only npreg-1.0-5/npreg/R/penalty_ord.R |only npreg-1.0-5/npreg/R/penalty_poly.R |only npreg-1.0-5/npreg/R/penalty_sph.R |only npreg-1.0-5/npreg/R/penalty_tps.R |only npreg-1.0-6/npreg/ChangeLog | 45 +++++++++++++++++--- npreg-1.0-6/npreg/DESCRIPTION | 8 +-- npreg-1.0-6/npreg/MD5 | 78 ++++++++++++++++++----------------- npreg-1.0-6/npreg/R/basis.R |only npreg-1.0-6/npreg/R/basis.nom.R |only npreg-1.0-6/npreg/R/basis.ord.R |only npreg-1.0-6/npreg/R/basis.poly.R |only npreg-1.0-6/npreg/R/basis.sph.R |only npreg-1.0-6/npreg/R/basis.tps.R |only npreg-1.0-6/npreg/R/bin.sample.R |only npreg-1.0-6/npreg/R/build_rkhs.R | 30 ++++++------- npreg-1.0-6/npreg/R/check_knot.R | 44 ++++++++----------- npreg-1.0-6/npreg/R/knot1samp.R | 8 ++- npreg-1.0-6/npreg/R/penalty.R |only npreg-1.0-6/npreg/R/penalty.nom.R |only npreg-1.0-6/npreg/R/penalty.ord.R |only npreg-1.0-6/npreg/R/penalty.poly.R |only npreg-1.0-6/npreg/R/penalty.sph.R |only npreg-1.0-6/npreg/R/penalty.tps.R |only npreg-1.0-6/npreg/R/plotci.R | 18 ++++++-- npreg-1.0-6/npreg/R/pred_rkhs.R | 18 ++++---- npreg-1.0-6/npreg/R/predict.ss.R | 2 npreg-1.0-6/npreg/R/ss.R | 4 - npreg-1.0-6/npreg/R/theta.mle.R | 10 ++-- npreg-1.0-6/npreg/R/varimp.R |only npreg-1.0-6/npreg/build |only npreg-1.0-6/npreg/man/bin.sample.Rd |only npreg-1.0-6/npreg/man/gsm.Rd | 12 ++--- npreg-1.0-6/npreg/man/nominal.Rd | 57 +++++++++++++++++++++---- npreg-1.0-6/npreg/man/ordinal.Rd | 55 +++++++++++++++++++++--- npreg-1.0-6/npreg/man/plotci.Rd | 8 ++- npreg-1.0-6/npreg/man/polynomial.Rd | 66 ++++++++++++++++++++++++----- npreg-1.0-6/npreg/man/predict.gsm.Rd | 6 +- npreg-1.0-6/npreg/man/predict.sm.Rd | 6 +- npreg-1.0-6/npreg/man/predict.ss.Rd | 6 +- npreg-1.0-6/npreg/man/psolve.Rd | 4 - npreg-1.0-6/npreg/man/sm.Rd | 20 ++++---- npreg-1.0-6/npreg/man/spherical.Rd | 57 ++++++++++++++++++++++--- npreg-1.0-6/npreg/man/ss.Rd | 10 ++-- npreg-1.0-6/npreg/man/summary.Rd | 6 +- npreg-1.0-6/npreg/man/theta.mle.Rd | 6 ++ npreg-1.0-6/npreg/man/thinplate.Rd | 59 ++++++++++++++++++++++---- npreg-1.0-6/npreg/man/varimp.Rd |only 54 files changed, 452 insertions(+), 191 deletions(-)
Title: Function Mocking for Unit Testing in R
Description: With the deprecation of mocking capabilities shipped with
'testthat' as of 'edition 3' it is left to third-party packages to replace
this functionality, which in some test-scenarios is essential in order to
run unit tests in limited environments (such as no Internet connection).
Mocking in this setting means temporarily substituting a function with a
stub that acts in some sense like the original function (for example by
serving a HTTP response that has been cached as a file). The only exported
function 'with_mock()' is modeled after the eponymous 'testthat' function
with the intention of providing a drop-in replacement.
Author: Nicolas Bennett [aut, cre]
Maintainer: Nicolas Bennett <nicolas.bennett@stat.math.ethz.ch>
Diff between mockthat versions 0.2.4 dated 2020-12-09 and 0.2.6 dated 2021-04-23
mockthat-0.2.4/mockthat/inst/testdata/mocktest_0.1.0.tar.gz |only mockthat-0.2.6/mockthat/DESCRIPTION | 9 mockthat-0.2.6/mockthat/MD5 | 26 - mockthat-0.2.6/mockthat/NAMESPACE | 1 mockthat-0.2.6/mockthat/NEWS.md | 8 mockthat-0.2.6/mockthat/R/helpers.R |only mockthat-0.2.6/mockthat/R/mock.R | 261 ++++-------- mockthat-0.2.6/mockthat/README.md | 14 mockthat-0.2.6/mockthat/inst/testdata/mocktest |only mockthat-0.2.6/mockthat/man/helpers.Rd |only mockthat-0.2.6/mockthat/man/mock.Rd | 90 ++-- mockthat-0.2.6/mockthat/tests/testthat/test-local-mock.R | 15 mockthat-0.2.6/mockthat/tests/testthat/test-mock-fun.R | 7 mockthat-0.2.6/mockthat/tests/testthat/test-mocktest.R | 151 +++++- 14 files changed, 338 insertions(+), 244 deletions(-)
Title: Method Comparison Regression
Description: Regression methods to quantify the relation between two measurement methods. In particular it addresses regression problems with errors in both variables and without repeated measurements. The package provides implementations of Deming regression, weighted Deming regression, and Passing-Bablok regression following the CLSI EP09-A3 recommendations for analytical method comparison and bias estimation using patient samples.
Author: Ekaterina Manuilova <ekaterina.manuilova@roche.com> Andre Schuetzenmeister <andre.schuetzenmeister@roche.com> Fabian Model <fabian.model@roche.com>
Maintainer: Sergej Potapov <sergej.potapov@roche.com>
Diff between mcr versions 1.2.1 dated 2014-02-12 and 1.2.2 dated 2021-04-23
DESCRIPTION | 12 ++++++------ MD5 | 9 +++++---- NAMESPACE | 8 +++++++- man/creatinine.Rd | 2 +- man/mcr-package.Rd | 7 +++---- src/init.c |only 6 files changed, 22 insertions(+), 16 deletions(-)
Title: Tools for 'iNZight'
Description: Provides a collection of wrapper functions for common variable and dataset manipulation workflows primarily used by 'iNZight', a graphical user interface providing easy exploration and visualisation of data for students of statistics, available in both desktop and online versions. Additionally, many of the functions return the 'tidyverse' code used to obtain the result in an effort to bridge the gap between GUI and coding.
Author: Tom Elliott [aut, cre] (<https://orcid.org/0000-0002-7815-6318>),
Christoph Knopf [ctb],
Akshay Gupta [ctb],
Owen Jin [aut] (Tidyverse variable/data manipulation functions),
Lushi Cai [ctb],
Yiwen He [aut] (Dates/times and dataset manipulation),
Daniel Barnett [aut] (Data validation)
Maintainer: Tom Elliott <tom.elliott@auckland.ac.nz>
Diff between iNZightTools versions 1.10 dated 2020-12-14 and 1.11.0 dated 2021-04-23
DESCRIPTION | 23 +++--- MD5 | 119 ++++++++++++++++++--------------- NAMESPACE | 4 + R/aggregate_data.R | 89 +++++++++++++++++++----- R/append_rows.R | 8 +- R/class_intervals.R |only R/collapse_levels.R | 26 ++++--- R/combine_cat_var.R | 19 +++-- R/convert_to_cat.R | 31 +++++--- R/create_new_var.R | 9 +- R/delete_vars.R | 9 +- R/filter_cat_levels.R | 26 +++++-- R/filter_numeric.R | 24 +++++- R/filter_random.R | 7 + R/filter_rows.R | 15 +++- R/import_data.R | 42 ++++++++--- R/import_survey.R | 49 +++++++++++-- R/join_data.R | 4 - R/missing_categorical.R | 58 +++++++--------- R/rank_var.R | 34 ++++++--- R/rename_levels.R | 17 +++- R/rename_vars.R | 10 ++ R/reorder_levels.R | 25 +++--- R/select_vars.R | 5 + R/separate_col.R | 28 ++++--- R/sort_data.R | 13 +++ R/stack_variables.R | 8 +- R/standardize_var.R | 41 +++++++---- R/tidycode.R | 12 +++ R/transform_var.R | 9 +- R/unite_cols.R | 35 ++++----- man/aggregateData.Rd | 2 man/appendrows.Rd | 4 - man/as_survey_spec.Rd |only man/filterLevels.Rd | 2 man/filterNumeric.Rd | 10 ++ man/filterRows.Rd | 2 man/form_class_intervals.Rd |only man/import_survey.Rd | 2 man/separate.Rd | 2 man/stackVars.Rd | 2 man/standardizeVars.Rd | 2 man/survey_IQR.Rd |only tests/testthat/test-test_tidy_code.R | 2 tests/testthat/test_aggregateData.R |only tests/testthat/test_appendrows.R |only tests/testthat/test_catvars.R | 10 ++ tests/testthat/test_classintervals.R |only tests/testthat/test_collapseLevels.R | 35 +++++++++ tests/testthat/test_createvar.R |only tests/testthat/test_filterLevels.R | 43 +++++++---- tests/testthat/test_filterNumeric.R | 41 +++++++++-- tests/testthat/test_filter_random.R |only tests/testthat/test_filter_rows.R |only tests/testthat/test_missing.R |only tests/testthat/test_rankvars.R |only tests/testthat/test_rename_levels.R |only tests/testthat/test_renamevars.R |only tests/testthat/test_reorderlevels.R | 30 ++++++-- tests/testthat/test_select_vars.R | 10 ++ tests/testthat/test_separate.R | 25 ++++++ tests/testthat/test_smart_read.R | 24 +++++- tests/testthat/test_sort.R |only tests/testthat/test_stackvars.R |only tests/testthat/test_standardize_vars.R |only tests/testthat/test_survey_design.R | 19 +++++ tests/testthat/test_tidy_code.R | 13 ++- tests/testthat/test_transform_var.R | 11 +++ tests/testthat/test_unite.R | 15 +++- 69 files changed, 795 insertions(+), 310 deletions(-)
Title: High Mach Finds Routes for Supersonic Aircraft
Description: For supersonic aircraft, flying subsonic over land,
High Mach finds the best route between airports. Allows for coastal buffer and
potentially closed regions. Uses minimal model of aircraft
performance: focus is on time saved versus subsonic flight, rather
than vertical flight profile. For modelling and forecasting, not for planning your
flight!
Author: David Marsh [aut, cre],
EUROCONTROL [fnd, cph]
Maintainer: David Marsh <david.marsh@eurocontrol.int>
Diff between himach versions 0.1.0 dated 2021-04-15 and 0.1.1 dated 2021-04-23
himach-0.1.0/himach/data/NZ_Buller_buffer40.rda |only himach-0.1.0/himach/data/NZ_buffer30.rda |only himach-0.1.0/himach/data/NZ_coast.rda |only himach-0.1.0/himach/data/NZ_grid.rda |only himach-0.1.0/himach/data/NZ_routes.rda |only himach-0.1.0/himach/man/NZ_Buller_buffer40.Rd |only himach-0.1.0/himach/man/NZ_buffer30.Rd |only himach-0.1.0/himach/man/NZ_coast.Rd |only himach-0.1.0/himach/man/NZ_grid.Rd |only himach-0.1.0/himach/man/NZ_routes.Rd |only himach-0.1.1/himach/DESCRIPTION | 14 himach-0.1.1/himach/MD5 | 73 +-- himach-0.1.1/himach/NAMESPACE | 1 himach-0.1.1/himach/NEWS.md | 7 himach-0.1.1/himach/R/data.R | 72 --- himach-0.1.1/himach/R/grids.R | 2 himach-0.1.1/himach/R/routes.R | 20 - himach-0.1.1/himach/R/sysdata.rda |binary himach-0.1.1/himach/R/utils.R | 72 +++ himach-0.1.1/himach/R/zzz.R | 1 himach-0.1.1/himach/README.md | 9 himach-0.1.1/himach/inst/doc/Supersonic_Routes.R | 8 himach-0.1.1/himach/inst/doc/Supersonic_Routes.Rmd | 8 himach-0.1.1/himach/inst/doc/Supersonic_Routes.html | 31 - himach-0.1.1/himach/inst/doc/Supersonic_Routes_in_depth.R | 21 - himach-0.1.1/himach/inst/doc/Supersonic_Routes_in_depth.Rmd | 22 - himach-0.1.1/himach/inst/doc/Supersonic_Routes_in_depth.html | 200 +++++----- himach-0.1.1/himach/man/find_leg.Rd | 5 himach-0.1.1/himach/man/find_route.Rd | 5 himach-0.1.1/himach/man/find_routes.Rd | 5 himach-0.1.1/himach/man/hm_get_test.Rd |only himach-0.1.1/himach/man/make_aircraft.Rd | 6 himach-0.1.1/himach/man/make_route_envelope.Rd | 2 himach-0.1.1/himach/man/make_route_grid.Rd | 2 himach-0.1.1/himach/man/summarise_routes.Rd | 1 himach-0.1.1/himach/tests/testthat/known/test_multiroute |binary himach-0.1.1/himach/tests/testthat/known/test_multiroute_nofly |binary himach-0.1.1/himach/tests/testthat/test_grid.R | 10 himach-0.1.1/himach/tests/testthat/test_map.R | 32 - himach-0.1.1/himach/tests/testthat/test_routes.R | 20 - himach-0.1.1/himach/tests/testthat/test_utils.R | 18 himach-0.1.1/himach/vignettes/Supersonic_Routes.Rmd | 8 himach-0.1.1/himach/vignettes/Supersonic_Routes_in_depth.Rmd | 22 - 43 files changed, 386 insertions(+), 311 deletions(-)
Title: Analysis of Basketball Data
Description: Collection of tools to work with basketball data. Functions available are related to friendly
web scraping and visualization. Data were obtained from <https://www.euroleague.net/>,
<https://www.eurocupbasketball.com/> and <http://www.acb.com>, following the instructions
of their respectives robots.txt files, when available. Tools for visualization include a population pyramid, 2D plots,
circular plots of players' percentiles, plots of players' monthly/yearly stats,
team heatmaps, team shooting plots, team four factors plots, cross-tables with the results of regular season games
and maps of nationalities. Please see Vinue (2020) <doi:10.1089/big.2018.0124>.
Author: Guillermo Vinue
Maintainer: Guillermo Vinue <Guillermo.Vinue@uv.es>
Diff between BAwiR versions 1.2.5 dated 2021-02-12 and 1.2.6 dated 2021-04-23
DESCRIPTION | 10 +++++----- MD5 | 22 +++++++++++----------- NEWS | 5 +++++ R/scraping_games_acb.R | 16 ++++++++-------- R/scraping_games_euro.R | 6 +++--- R/scraping_rosters_acb.R | 2 +- R/scraping_rosters_euro.R | 2 +- inst/doc/BAwiR.html | 11 ++++++----- man/scraping_games_acb.Rd | 14 +++++++------- man/scraping_games_euro.Rd | 4 ++-- man/scraping_rosters_acb.Rd | 2 +- man/scraping_rosters_euro.Rd | 2 +- 12 files changed, 51 insertions(+), 45 deletions(-)
Title: Normalized Power Prior Bayesian Analysis
Description: Posterior sampling in several commonly used distributions using
normalized power prior as described in
Duan, Ye and Smith (2006) <doi:10.1002/env.752> and
Ibrahim et.al. (2015) <doi:10.1002/sim.6728>.
Sampling of the power parameter is achieved via
either independence Metropolis-Hastings or random walk Metropolis-Hastings
based on transformation.
Author: Zifei Han, Tianyu Bai and Keying Ye
Maintainer: Zifei Han <hanzifei1@gmail.com>
Diff between NPP versions 0.3.0 dated 2021-01-14 and 0.4.0 dated 2021-04-23
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/PosteriorModeNPP.R | 3 ++- 3 files changed, 7 insertions(+), 6 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-02-15 1.1.1
2021-02-03 1.1.0
2020-10-25 1.0.4
Title: Tidy Tuning Tools
Description: The ability to tune models is important. 'tune' contains functions and
classes to be used in conjunction with other 'tidymodels' packages for
finding reasonable values of hyper-parameters in models, pre-processing
methods, and post-processing steps.
Author: Max Kuhn [aut, cre] (<https://orcid.org/0000-0003-2402-136X>),
RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between tune versions 0.1.4 dated 2021-04-20 and 0.1.5 dated 2021-04-23
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/conf_mat_resampled.R | 2 +- tests/testthat/test-conf-mat-resampled.R | 10 ++++++++++ 5 files changed, 23 insertions(+), 9 deletions(-)
Title: Statistics Norway's Miscellaneous Tools
Description: Functions used by other packages from Statistics Norway are gathered. General data manipulation functions, and functions for hierarchical computations are included (Langsrud, 2020) <doi:10.13140/RG.2.2.27313.61283>. The hierarchy specification functions are useful within statistical disclosure control.
Author: Øyvind Langsrud [aut, cre],
Bjørn-Helge Mevik [cph]
Maintainer: Øyvind Langsrud <oyl@ssb.no>
Diff between SSBtools versions 1.0.0 dated 2021-03-04 and 1.1.0 dated 2021-04-23
DESCRIPTION | 9 +-- MD5 | 28 +++++++--- NAMESPACE | 1 R/FormulaSums.R | 81 +++++++++++++++++++++++++++++-- R/ModelMatrix.R | 68 +++++++++++++++++++++++++- R/SSBtoolsData.R | 85 +++++++++++++++++++++++++++++++++ data |only man/FormulaSums.Rd | 7 ++ man/ModelMatrix.Rd | 9 +++ man/SSBtoolsData.Rd | 3 + man/sosialFiktiv.Rd |only tests/testthat/test-HierarchyCompute.R | 4 - 12 files changed, 269 insertions(+), 26 deletions(-)
Title: Robust PCA by Projection Pursuit
Description: Provides functions for robust PCA by projection pursuit.
The methods are described in Croux et al. (2006) <doi:10.2139/ssrn.968376>,
Croux et al. (2013) <doi:10.1080/00401706.2012.727746>,
Todorov and Filzmoser (2013) <doi:10.1007/978-3-642-33042-1_31>.
Author: Peter Filzmoser, Heinrich Fritz, Klaudius Kalcher
Maintainer: Valentin Todorov <valentin.todorov@chello.at>
Diff between pcaPP versions 1.9-73 dated 2018-01-14 and 1.9-74 dated 2021-04-23
DESCRIPTION | 15 ++++++++++----- MD5 | 4 ++-- man/l1median_NLM.Rd | 5 ++++- 3 files changed, 16 insertions(+), 8 deletions(-)
Title: Animal Sounds for Bioacustic Analysis
Description: Collection of example animal sounds for bioacoustic analysis.
Author: Marcelo Araya-Salas [aut, cre]
Maintainer: Marcelo Araya-Salas <marcelo.araya@ucr.ac.cr>
Diff between NatureSounds versions 1.0.3 dated 2020-03-13 and 1.0.4 dated 2021-04-23
NatureSounds-1.0.3/NatureSounds/data/datalist |only NatureSounds-1.0.4/NatureSounds/DESCRIPTION | 17 NatureSounds-1.0.4/NatureSounds/MD5 | 59 NatureSounds-1.0.4/NatureSounds/NEWS.md | 4 NatureSounds-1.0.4/NatureSounds/R/Cryp.soui-data.R | 2 NatureSounds-1.0.4/NatureSounds/R/Phae.long1-data.R | 2 NatureSounds-1.0.4/NatureSounds/R/Phae.long2-data.R | 2 NatureSounds-1.0.4/NatureSounds/R/Phae.long3-data.R | 2 NatureSounds-1.0.4/NatureSounds/R/Phae.long4-data.R | 2 NatureSounds-1.0.4/NatureSounds/README.md | 6 NatureSounds-1.0.4/NatureSounds/build/vignette.rds |binary NatureSounds-1.0.4/NatureSounds/data/Cryp.soui.rda |binary NatureSounds-1.0.4/NatureSounds/data/Phae.long.est.rda |binary NatureSounds-1.0.4/NatureSounds/data/Phae.long1.rda |binary NatureSounds-1.0.4/NatureSounds/data/Phae.long2.rda |binary NatureSounds-1.0.4/NatureSounds/data/Phae.long3.rda |binary NatureSounds-1.0.4/NatureSounds/data/Phae.long4.rda |binary NatureSounds-1.0.4/NatureSounds/data/lbh.est.rda |binary NatureSounds-1.0.4/NatureSounds/data/thyroptera.est.rda |binary NatureSounds-1.0.4/NatureSounds/inst/doc/Acoustic_data_sets_in_NatureSounds.Rmd | 11 NatureSounds-1.0.4/NatureSounds/inst/doc/Acoustic_data_sets_in_NatureSounds.html | 1321 +++++++++- NatureSounds-1.0.4/NatureSounds/man/Cryp.soui.Rd | 8 NatureSounds-1.0.4/NatureSounds/man/Phae.long.est.Rd | 4 NatureSounds-1.0.4/NatureSounds/man/Phae.long1.Rd | 8 NatureSounds-1.0.4/NatureSounds/man/Phae.long2.Rd | 8 NatureSounds-1.0.4/NatureSounds/man/Phae.long3.Rd | 8 NatureSounds-1.0.4/NatureSounds/man/Phae.long4.Rd | 8 NatureSounds-1.0.4/NatureSounds/man/lbh.est.Rd | 4 NatureSounds-1.0.4/NatureSounds/man/monk.parakeet.est.Rd | 4 NatureSounds-1.0.4/NatureSounds/man/thyroptera.est.Rd | 4 NatureSounds-1.0.4/NatureSounds/vignettes/Acoustic_data_sets_in_NatureSounds.Rmd | 11 31 files changed, 1392 insertions(+), 103 deletions(-)
Title: Colour Schemes for Scientific Data Visualization
Description: Colour schemes ready for each type of data (qualitative,
diverging or sequential), with colours that are distinct for all
people, including colour-blind readers. This package provides an
implementation of Paul Tol (2018) and Fabio Crameri (2018) <doi:
10.5194/gmd-11-2541-2018> colour schemes for use with 'graphics' or
'ggplot2'. It provides tools to simulate colour-blindness and to test
how well the colours of any palette are identifiable. Several
scientific thematic schemes (geologic timescale, land cover, FAO
soils, etc.) are also implemented.
Author: Nicolas Frerebeau [aut, cre] (<https://orcid.org/0000-0001-5759-4944>),
Brice Lebrun [ctb] (<https://orcid.org/0000-0001-7503-8685>),
Vincent Arel-Bundock [ctb] (<https://orcid.org/0000-0003-2042-7063>)
Maintainer: Nicolas Frerebeau <nicolas.frerebeau@u-bordeaux-montaigne.fr>
Diff between khroma versions 1.4.1 dated 2021-03-17 and 1.5.0 dated 2021-04-23
DESCRIPTION | 32 ++++---- MD5 | 59 +++++++++------- NAMESPACE | 105 +++++++++++++++++++++++++++++ R/khroma-package.R | 6 + R/scale_colour_crameri.R |only R/scale_colour_tol.R | 4 - R/sysdata.rda |binary README.md | 84 +++++++---------------- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 4 - inst/doc/crameri.R |only inst/doc/crameri.Rmd |only inst/doc/crameri.html |only inst/doc/tol.R | 2 inst/doc/tol.Rmd | 10 +- inst/doc/tol.html | 12 +-- inst/examples/ex-crameri-diverging.R |only inst/examples/ex-crameri-multisequential.R |only inst/examples/ex-crameri-sequential.R |only inst/examples/ex-tol-diverging.R | 2 inst/examples/ex-tol-sequential.R | 2 man/khroma-package.Rd | 22 +++--- man/scale_crameri_cyclic.Rd |only man/scale_crameri_diverging.Rd |only man/scale_crameri_mutlisequential.Rd |only man/scale_crameri_sequential.Rd |only man/scale_okabeito_discrete.Rd | 4 + man/scale_tol_discrete.Rd | 4 + man/scale_tol_diverging.Rd | 11 ++- man/scale_tol_sequential.Rd | 11 ++- tests/testthat/test-colour.R | 7 + tests/testthat/test-ggplot2-crameri.R |only tests/testthat/test-ggplot2-tol.R | 7 - vignettes/bibliography.bib | 62 ++++++++++++----- vignettes/crameri.Rmd |only vignettes/tol.Rmd | 10 +- 37 files changed, 303 insertions(+), 157 deletions(-)