Title: Versatile Curation of Table Metadata
Description: A YAML-based
mechanism for working with table metadata. Supports
compact syntax for creating, modifying, viewing, exporting,
importing, displaying, and plotting metadata coded as column
attributes. The 'yamlet' dialect is valid 'YAML' with
defaults and conventions chosen to improve readability.
See ?yamlet, ?decorate.data.frame and ?modify.default.
See ?read_yamlet ?write_yamlet, ?io_csv, and ?ggplot.decorated.
Author: Tim Bergsma
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between yamlet versions 0.7.2 dated 2021-03-07 and 0.7.5 dated 2021-04-28
DESCRIPTION | 13 ++-- MD5 | 30 +++++------ NAMESPACE | 5 + R/ggplot.R | 2 R/ggplot_ggready.R | 3 + R/io_csv.R | 7 +- R/yamlet.R | 15 ++++- build/vignette.rds |binary inst/doc/yamlet-introduction.html | 36 ++++++------- man/ggplot_build.decorated_ggplot.Rd | 2 man/ggplot_build.ggready_ggplot.Rd | 2 man/io_csv.data.frame.Rd | 3 - man/to_yamlet.character.Rd | 5 + man/to_yamlet.list.Rd | 3 + tests/figs |only tests/testthat/Rplots.pdf |only tests/testthat/test-yamlet.R | 94 ++++++++++++++++++++++------------- 17 files changed, 135 insertions(+), 85 deletions(-)
Title: Recursive Partitioning for Structural Equation Models
Description: SEM Trees and SEM Forests -- an extension of model-based decision
trees and forests to Structural Equation Models (SEM). SEM trees hierarchically
split empirical data into homogeneous groups sharing similar data patterns
with respect to a SEM by recursively selecting optimal predictors of these
differences. SEM forests are an extension of SEM trees. They are ensembles of
SEM trees each built on a random sample of the original data. By aggregating
over a forest, we obtain measures of variable importance that are more robust
than measures from single trees.
Author: Andreas M. Brandmaier [aut, cre],
John J. Prindle [aut],
Manuel Arnold [aut]
Maintainer: Andreas M. Brandmaier <andy@brandmaier.de>
Diff between semtree versions 0.9.14 dated 2020-01-07 and 0.9.15 dated 2021-04-28
semtree-0.9.14/semtree/R/print.semtreeControl.R |only semtree-0.9.14/semtree/R/scoreTest.R |only semtree-0.9.14/semtree/R/scoreTestcensored.R |only semtree-0.9.14/semtree/man/distances.Rd |only semtree-0.9.14/semtree/man/merge.Rd |only semtree-0.9.14/semtree/man/prune.semtree.Rd |only semtree-0.9.15/semtree/DESCRIPTION | 19 semtree-0.9.15/semtree/MD5 | 263 +- semtree-0.9.15/semtree/NAMESPACE | 226 -- semtree-0.9.15/semtree/NEWS.md | 18 semtree-0.9.15/semtree/R/OpenMx_scores_input.R |only semtree-0.9.15/semtree/R/aggregateVarimp.R |only semtree-0.9.15/semtree/R/biodiversity.R | 13 semtree-0.9.15/semtree/R/bootstrap.R | 2 semtree-0.9.15/semtree/R/checkBinSize.R |only semtree-0.9.15/semtree/R/checkControl.R | 30 semtree-0.9.15/semtree/R/checkLevelOfMeasurement.R |only semtree-0.9.15/semtree/R/coef.R | 23 semtree-0.9.15/semtree/R/colmap.R | 1 semtree-0.9.15/semtree/R/computePval_maxLR.R |only semtree-0.9.15/semtree/R/diversityMatrix.R | 9 semtree-0.9.15/semtree/R/evaluate.semforest.R | 19 semtree-0.9.15/semtree/R/evaluateDataLikelihood.R | 194 + semtree-0.9.15/semtree/R/evaluateTree.R | 96 semtree-0.9.15/semtree/R/evaluateTreeConditional.R | 11 semtree-0.9.15/semtree/R/evaluateTreeFocus.R |only semtree-0.9.15/semtree/R/fairSplit.R | 1196 ++++++------ semtree-0.9.15/semtree/R/findOtherSplits.R | 17 semtree-0.9.15/semtree/R/fitSubmodels.R | 497 +++- semtree-0.9.15/semtree/R/gefp_semtree.R |only semtree-0.9.15/semtree/R/getHeight.R | 25 semtree-0.9.15/semtree/R/getLeafs.R | 17 semtree-0.9.15/semtree/R/getNodeById.R | 12 semtree-0.9.15/semtree/R/getNumNodes.R | 10 semtree-0.9.15/semtree/R/getTerminalNodes.R | 15 semtree-0.9.15/semtree/R/growTree.R | 226 +- semtree-0.9.15/semtree/R/hellinger.R | 2 semtree-0.9.15/semtree/R/indexing.R | 3 semtree-0.9.15/semtree/R/isLeaf.R | 11 semtree-0.9.15/semtree/R/kl.R | 14 semtree-0.9.15/semtree/R/logLik.R | 1 semtree-0.9.15/semtree/R/mergeForests.R | 16 semtree-0.9.15/semtree/R/modelEstimates.R | 21 semtree-0.9.15/semtree/R/mxAddNewModelData.R | 1 semtree-0.9.15/semtree/R/mxScores.R |only semtree-0.9.15/semtree/R/naiveSplit.R | 34 semtree-0.9.15/semtree/R/naiveSplitScoreTest.R | 283 +- semtree-0.9.15/semtree/R/nobs.MxRAMModel.R |only semtree-0.9.15/semtree/R/nobs.R | 1 semtree-0.9.15/semtree/R/outliers.R | 14 semtree-0.9.15/semtree/R/parameters.R | 22 semtree-0.9.15/semtree/R/partialDependencePlot.R | 23 semtree-0.9.15/semtree/R/plot.diversityMatrix.R | 1 semtree-0.9.15/semtree/R/plot.proximity.R | 1 semtree-0.9.15/semtree/R/plot.semforest.varimp.R | 2 semtree-0.9.15/semtree/R/plot.semtree.R | 295 +- semtree-0.9.15/semtree/R/plot.varimpConvergence.R | 2 semtree-0.9.15/semtree/R/postprocess.R | 5 semtree-0.9.15/semtree/R/print.semforest.R | 1 semtree-0.9.15/semtree/R/print.semforest.control.R | 1 semtree-0.9.15/semtree/R/print.semforest.varimp.R | 2 semtree-0.9.15/semtree/R/print.semtree.control.R | 44 semtree-0.9.15/semtree/R/print.summary.semtree.R | 1 semtree-0.9.15/semtree/R/proximity.R | 26 semtree-0.9.15/semtree/R/prune.R | 25 semtree-0.9.15/semtree/R/prune.semforest.R | 1 semtree-0.9.15/semtree/R/prune.semtree.R | 1 semtree-0.9.15/semtree/R/replaceParametersInMxConstraints.R |only semtree-0.9.15/semtree/R/scaled_cutpoint.R |only semtree-0.9.15/semtree/R/sctest_info.R |only semtree-0.9.15/semtree/R/se.R | 89 semtree-0.9.15/semtree/R/semforest.R | 274 +- semtree-0.9.15/semtree/R/semforest.control.R | 22 semtree-0.9.15/semtree/R/semtree-package.R |only semtree-0.9.15/semtree/R/semtree.R | 384 ++- semtree-0.9.15/semtree/R/semtree.apply.wrapper.R | 7 semtree-0.9.15/semtree/R/semtree.control.R | 259 ++ semtree-0.9.15/semtree/R/semtreeApplyWrapper.R | 87 semtree-0.9.15/semtree/R/subforest.R | 19 semtree-0.9.15/semtree/R/subtree.R | 22 semtree-0.9.15/semtree/R/summary.semforest.R | 1 semtree-0.9.15/semtree/R/summary.semtree.R | 1 semtree-0.9.15/semtree/R/toTable.R | 24 semtree-0.9.15/semtree/R/traverse.R | 13 semtree-0.9.15/semtree/R/tree.constraints.R | 34 semtree-0.9.15/semtree/R/ui.R |only semtree-0.9.15/semtree/R/varimp-convergence-plot.R | 3 semtree-0.9.15/semtree/R/varimp.R | 196 - semtree-0.9.15/semtree/R/varimpFocus.R |only semtree-0.9.15/semtree/R/varimpTree.R |only semtree-0.9.15/semtree/R/vcov_semtree.R |only semtree-0.9.15/semtree/README.md | 63 semtree-0.9.15/semtree/build/vignette.rds |binary semtree-0.9.15/semtree/inst/doc/constraints.R | 9 semtree-0.9.15/semtree/inst/doc/constraints.Rmd | 15 semtree-0.9.15/semtree/inst/doc/constraints.html | 900 +++++---- semtree-0.9.15/semtree/inst/doc/forests.R |only semtree-0.9.15/semtree/inst/doc/forests.Rmd |only semtree-0.9.15/semtree/inst/doc/forests.html |only semtree-0.9.15/semtree/inst/doc/getting-started.Rmd | 2 semtree-0.9.15/semtree/inst/doc/getting-started.html | 643 +++--- semtree-0.9.15/semtree/inst/doc/score-based-tests.R |only semtree-0.9.15/semtree/inst/doc/score-based-tests.Rmd |only semtree-0.9.15/semtree/inst/doc/score-based-tests.html |only semtree-0.9.15/semtree/inst/doc/semforest-focus.R |only semtree-0.9.15/semtree/inst/doc/semforest-focus.Rmd |only semtree-0.9.15/semtree/inst/doc/semforest-focus.html |only semtree-0.9.15/semtree/man/biodiversity.Rd | 36 semtree-0.9.15/semtree/man/coef.semtree.Rd |only semtree-0.9.15/semtree/man/computePval_maxLR.Rd |only semtree-0.9.15/semtree/man/diversityMatrix.Rd | 12 semtree-0.9.15/semtree/man/evaluate.Rd | 49 semtree-0.9.15/semtree/man/evaluateDataLikelihood.Rd | 78 semtree-0.9.15/semtree/man/evaluateTree.Rd | 65 semtree-0.9.15/semtree/man/findOtherSplits.Rd | 43 semtree-0.9.15/semtree/man/fitSubmodels.Rd |only semtree-0.9.15/semtree/man/getDepth.Rd | 29 semtree-0.9.15/semtree/man/getHeight.Rd | 29 semtree-0.9.15/semtree/man/getLeafs.Rd | 37 semtree-0.9.15/semtree/man/getNodeById.Rd | 30 semtree-0.9.15/semtree/man/getNumNodes.Rd | 23 semtree-0.9.15/semtree/man/getTerminalNodes.Rd | 22 semtree-0.9.15/semtree/man/isLeaf.Rd | 29 semtree-0.9.15/semtree/man/kl.Rd |only semtree-0.9.15/semtree/man/lgcm.Rd | 30 semtree-0.9.15/semtree/man/merge.semforest.Rd |only semtree-0.9.15/semtree/man/modelEstimates.Rd | 37 semtree-0.9.15/semtree/man/outliers.Rd | 30 semtree-0.9.15/semtree/man/parameters.Rd | 61 semtree-0.9.15/semtree/man/partialDependence.Rd | 41 semtree-0.9.15/semtree/man/proximity.Rd | 64 semtree-0.9.15/semtree/man/prune.Rd |only semtree-0.9.15/semtree/man/se.Rd | 60 semtree-0.9.15/semtree/man/semforest.Rd | 85 semtree-0.9.15/semtree/man/semforest.control.Rd | 52 semtree-0.9.15/semtree/man/semtree.Rd | 182 - semtree-0.9.15/semtree/man/semtree.constraints.Rd | 62 semtree-0.9.15/semtree/man/semtree.control.Rd | 230 +- semtree-0.9.15/semtree/man/subforest.Rd | 41 semtree-0.9.15/semtree/man/subtree.Rd | 73 semtree-0.9.15/semtree/man/toTable.Rd | 26 semtree-0.9.15/semtree/man/varimp.Rd | 76 semtree-0.9.15/semtree/tests/invariance.R | 13 semtree-0.9.15/semtree/tests/lavaan.R | 6 semtree-0.9.15/semtree/tests/scores.R |only semtree-0.9.15/semtree/tests/testthat |only semtree-0.9.15/semtree/tests/tree.R | 4 semtree-0.9.15/semtree/tests/vim.R | 7 semtree-0.9.15/semtree/vignettes/constraints.Rmd | 15 semtree-0.9.15/semtree/vignettes/forests.Rmd |only semtree-0.9.15/semtree/vignettes/getting-started.Rmd | 2 semtree-0.9.15/semtree/vignettes/score-based-tests.Rmd |only semtree-0.9.15/semtree/vignettes/semforest-focus.Rmd |only 153 files changed, 5021 insertions(+), 3518 deletions(-)
Title: Database Storage of Genotype Probabilities for QTL Mapping
Description: Uses the 'fst' package to store genotype probabilities on disk for the 'qtl2' package. These genotype probabilities are a central data object for mapping quantitative trait loci (QTL), but they can be quite large. The facilities in this package enable the genotype probabilities to be stored on disk, leading to reduced memory usage with only a modest increase in computation time.
Author: Karl W Broman [aut, cre] (<https://orcid.org/0000-0002-4914-6671>),
Brian S Yandell [aut] (<https://orcid.org/0000-0002-8774-9377>),
Petr Simecek [aut] (<https://orcid.org/0000-0002-2922-7183>)
Maintainer: Karl W Broman <broman@wisc.edu>
Diff between qtl2fst versions 0.22-7 dated 2020-07-30 and 0.24 dated 2021-04-28
DESCRIPTION | 11 - MD5 | 18 + NEWS.md | 17 + README.md | 15 + build/vignette.rds |binary inst/doc/qtl2fst.Rmd | 8 inst/doc/qtl2fst.html | 344 ++++++++------------------------- tests/testthat/test-calc_entropy.R |only tests/testthat/test-calc_geno_freq.R |only tests/testthat/test-calc_het.R |only tests/testthat/test-compare_genoprob.R |only vignettes/qtl2fst.Rmd | 8 12 files changed, 145 insertions(+), 276 deletions(-)
Title: Depth Importance in Precision Medicine (DIPM) Method
Description: An implementation of the Depth Importance in Precision Medicine (DIPM) method
in Chen and Zhang (2020) <doi:10.1093/biostatistics/kxaa021> and Chen and
Zhang (2020) <doi:10.1007/978-3-030-46161-4_16>. The DIPM method is a classification
tree that searches for subgroups with especially poor or strong performance in a given treatment group.
Author: Cai Li [aut, cre],
Victoria Chen [aut],
Heping Zhang [aut]
Maintainer: Cai Li <cai.li@yale.edu>
Diff between dipm versions 1.1 dated 2021-03-06 and 1.2 dated 2021-04-28
dipm-1.1/dipm/man/coxph_R_to_C.Rd |only dipm-1.1/dipm/man/coxph_R_to_C_multi.Rd |only dipm-1.1/dipm/man/lm_R_to_C.Rd |only dipm-1.1/dipm/man/predict_dipm.Rd |only dipm-1.2/dipm/DESCRIPTION | 9 - dipm-1.2/dipm/MD5 | 30 ++-- dipm-1.2/dipm/NAMESPACE | 2 dipm-1.2/dipm/R/coxph_R_to_C.R | 2 dipm-1.2/dipm/R/coxph_R_to_C_multi.R | 6 dipm-1.2/dipm/R/dipm.R | 10 + dipm-1.2/dipm/R/ini_node.R | 90 ------------- dipm-1.2/dipm/R/lm_R_to_C.R | 6 dipm-1.2/dipm/R/print.dipm.R | 24 +-- dipm-1.2/dipm/R/spmtree.R | 10 + dipm-1.2/dipm/man/dipm.Rd | 3 dipm-1.2/dipm/man/spmtree.Rd | 3 dipm-1.2/dipm/src/dipm.c | 207 ++++++++++++++++++-------------- dipm-1.2/dipm/src/dipm_init.c | 4 18 files changed, 181 insertions(+), 225 deletions(-)
Title: Concordance Correlation Coefficient for Repeated (and
Non-Repeated) Measures
Description: Estimates the Concordance Correlation Coefficient to assess agreement. The scenarios considered are non-repeated measures, non-longitudinal repeated measures (replicates) and longitudinal repeated measures. It also includes the estimation of the one-way intraclass correlation coefficient also known as reliability index. The estimation approaches implemented are variance components and U-statistics approaches. Description of methods can be found in Fleiss (1986) <doi:10.1002/9781118032923.ch1> and Carrasco et al. (2013) <doi:10.1016/j.cmpb.2012.09.002>.
Author: Josep Lluis Carrasco <jlcarrasco@ub.edu>, Josep Puig Martinez
<j.puig04@gmail.com>
Maintainer: Josep Lluis Carrasco <jlcarrasco@ub.edu>
Diff between cccrm versions 2.0.2 dated 2021-04-16 and 2.0.3 dated 2021-04-28
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- R/extra_func.R | 2 +- R/icc.R | 9 ++++++--- man/icc.Rd | 12 +++++++++--- 5 files changed, 25 insertions(+), 16 deletions(-)
Title: API Client and Dataset Management for the Demographic and Health
Survey (DHS) Data
Description: Provides a client for (1) querying the DHS API for survey indicators
and metadata (<https://api.dhsprogram.com/#/index.html>), (2) identifying surveys
and datasets for analysis, (3) downloading survey datasets from the DHS website,
(4) loading datasets and associate metadata into R, and (5) extracting variables
and combining datasets for pooled analysis.
Author: OJ Watson [aut, cre] (<https://orcid.org/0000-0003-2374-0741>),
Jeff Eaton [aut] (<https://orcid.org/0000-0001-7728-728X>),
Lucy D'Agostino McGowan [rev] (<https://orcid.org/0000-0001-7297-9359>),
Duncan Gillespie [rev]
Maintainer: OJ Watson <oj.watson@hotmail.co.uk>
Diff between rdhs versions 0.7.1 dated 2020-12-01 and 0.7.2 dated 2021-04-28
rdhs-0.7.1/rdhs/tests/testthat/demo |only rdhs-0.7.2/rdhs/DESCRIPTION | 8 - rdhs-0.7.2/rdhs/MD5 | 88 +------------------- rdhs-0.7.2/rdhs/NEWS.md | 4 rdhs-0.7.2/rdhs/R/authentication.R | 13 ++ rdhs-0.7.2/rdhs/build/vignette.rds |binary rdhs-0.7.2/rdhs/inst/doc/toolkit.Rmd | 2 rdhs-0.7.2/rdhs/inst/doc/toolkit.html | 2 rdhs-0.7.2/rdhs/tests/testthat/test_miscellaneous.R | 1 rdhs-0.7.2/rdhs/vignettes/toolkit.Rmd | 2 10 files changed, 33 insertions(+), 87 deletions(-)
Title: Analysis of Single-Cell Chromatin Data
Description: A framework for the analysis and exploration of single-cell chromatin data.
The 'Signac' package contains functions for quantifying single-cell chromatin data,
computing per-cell quality control metrics, dimension reduction
and normalization, visualization, and DNA sequence motif analysis.
Reference: Stuart et al. (2020) <doi:10.1101/2020.11.09.373613>.
Author: Tim Stuart [aut, cre] (<https://orcid.org/0000-0002-3044-0897>),
Avi Srivastava [aut] (<https://orcid.org/0000-0001-9798-2079>),
Paul Hoffman [ctb] (<https://orcid.org/0000-0002-7693-8957>),
Rahul Satija [ctb] (<https://orcid.org/0000-0001-9448-8833>)
Maintainer: Tim Stuart <tstuart@nygenome.org>
Diff between Signac versions 1.1.1 dated 2021-02-03 and 1.2.0 dated 2021-04-28
DESCRIPTION | 24 +- MD5 | 45 ++-- NAMESPACE | 18 + NEWS.md | 37 +++ R/footprinting.R | 23 +- R/fragments.R | 2 R/links.R | 76 ++++++- R/mito.R | 1 R/motifs.R | 4 R/objects.R | 92 +++++---- R/peaks.R | 7 R/preprocessing.R | 154 +++++++++------ R/quantification.R | 34 ++- R/utilities.R | 252 ++++++++++++++++--------- R/visualization.R | 477 +++++++++++++++++++++++++++++++++++++++++++++--- README.md | 4 build/partial.rdb |binary man/BigwigTrack.Rd |only man/CoveragePlot.Rd | 33 +++ man/GeneActivity.Rd | 13 + man/GetCellsInRegion.Rd | 6 man/GetTSSPositions.Rd | 5 man/LinkPeaks.Rd | 19 + man/NucleosomeSignal.Rd | 2 24 files changed, 1037 insertions(+), 291 deletions(-)
Title: R Analyzer for Large-Scale Assessments
Description: Prepare and analyze data from large-scale assessments and surveys with
complex sampling and assessment design (see 'Rutkowski', 2010
<doi:10.3102/0013189X10363170>). Such studies are, for example,
international assessments like 'TIMSS', 'PIRLS' and 'PISA'. A graphical
interface is available for the non-technical user.The package includes
functions to covert the original data from 'SPSS' into 'R' data sets
keeping the user-defined missing values, merge data from different
respondents and/or countries, generate variable dictionaries, modify
data, produce descriptive statistics (percentages, means, percentiles,
benchmarks) and multivariate statistics (correlations, linear
regression, binary logistic regression). The number of supported
studies and analysis types will increase in future.
Author: Plamen V. Mirazchiyski [aut, cre],
INERI [aut]
Maintainer: Plamen V. Mirazchiyski <plamen.mirazchiyski@ineri.org>
Diff between RALSA versions 0.90.3 dated 2021-03-15 and 1.0.0 dated 2021-04-28
DESCRIPTION | 9 MD5 | 40 +- NAMESPACE | 3 NEWS.md | 42 ++ R/RALSA.r | 7 R/common.r | 451 +++++++++++++++++++++--- R/lsa.bench.r | 38 +- R/lsa.bin.log.reg.r | 21 + R/lsa.convert.data.r | 4 R/lsa.corr.r | 8 R/lsa.data.diag.r |only R/lsa.lin.reg.r | 10 R/lsa.merge.data.r | 6 R/lsa.pcts.means.r | 11 R/lsa.prctls.r | 26 + R/lsa.recode.vars.r | 7 R/lsa.vars.dict.r | 3 inst/shiny/GUI/server.r | 873 +++++++++++++++++++++++++++++++++++++++--------- inst/shiny/GUI/ui.r | 449 +++++++++++++++++------- man/RALSA.Rd | 3 man/lsa.data.diag.Rd |only man/lsa.pcts.means.Rd | 6 22 files changed, 1624 insertions(+), 393 deletions(-)
Title: Continuous Analog of a Binomial Distribution
Description: Implementation of the d/p/q/r family of functions for a continuous analog to the standard discrete binomial with continuous size parameter and continuous support with x in [0, size + 1], following Ilienko (2013) <arXiv:1303.5990>.
Author: Dan Dalthorp
Maintainer: Dan Dalthorp <ddalthorp@protonmail.com>
Diff between cbinom versions 1.5 dated 2020-11-22 and 1.6 dated 2021-04-28
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- R/RcppExports.R | 30 +++++++++++++++--------------- man/cbinom-package.Rd | 3 +-- src/cbinom.cpp | 3 +++ 5 files changed, 28 insertions(+), 26 deletions(-)
Title: Create Maps and Visualize Data in 2D and 3D
Description: Uses a combination of raytracing and multiple hill shading methods to produce 2D and 3D data visualizations and maps. Includes water detection and layering functions, programmable color palette generation, several built-in textures for hill shading, 2D and 3D plotting options, a built-in path tracer, 'Wavefront' OBJ file export, and the ability to save 3D visualizations to a 3D printable format.
Author: Tyler Morgan-Wall
Maintainer: Tyler Morgan-Wall <tylermw@gmail.com>
Diff between rayshader versions 0.24.5 dated 2021-04-11 and 0.24.10 dated 2021-04-28
DESCRIPTION | 8 +- MD5 | 120 +++++++++++++++++++------------------- R/add_overlay.R | 7 +- R/data.R | 6 - R/generate_altitude_overlay.R | 3 R/generate_compass_overlay.R | 3 R/generate_contour_overlay.R | 3 R/generate_label_overlay.R | 3 R/generate_line_overlay.R | 3 R/generate_point_overlay.R | 2 R/generate_polygon_overlay.R | 3 R/generate_scalebar_overlay.R | 3 R/generate_waterline_overlay.R | 5 + R/make_base.R | 3 R/plot_3d.R | 2 R/plot_gg.R | 37 +++++------ R/raster_to_matrix.R | 2 R/render_camera.R | 3 R/render_compass.R | 3 R/render_depth.R | 7 ++ R/render_highquality.R | 14 ++-- R/render_label.R | 2 R/render_movie.R | 2 R/render_path.R | 2 R/render_points.R | 2 R/render_polygons.R | 2 R/render_scalebar.R | 2 R/render_snapshot.R | 14 ++-- R/render_water.R | 2 R/save_3dprint.R | 2 R/save_obj.R | 31 ++++----- man/add_overlay.Rd | 7 +- man/generate_altitude_overlay.Rd | 3 man/generate_compass_overlay.Rd | 3 man/generate_contour_overlay.Rd | 3 man/generate_label_overlay.Rd | 3 man/generate_line_overlay.Rd | 3 man/generate_point_overlay.Rd | 2 man/generate_polygon_overlay.Rd | 3 man/generate_scalebar_overlay.Rd | 3 man/generate_waterline_overlay.Rd | 5 + man/monterey_counties_sf.Rd | 2 man/monterey_roads_sf.Rd | 2 man/montereybay.Rd | 2 man/plot_3d.Rd | 2 man/plot_gg.Rd | 37 +++++------ man/raster_to_matrix.Rd | 2 man/render_camera.Rd | 3 man/render_compass.Rd | 3 man/render_depth.Rd | 3 man/render_highquality.Rd | 2 man/render_label.Rd | 2 man/render_movie.Rd | 2 man/render_path.Rd | 2 man/render_points.Rd | 2 man/render_polygons.Rd | 2 man/render_scalebar.Rd | 2 man/render_snapshot.Rd | 11 +-- man/render_water.Rd | 2 man/save_3dprint.Rd | 2 man/save_obj.Rd | 2 61 files changed, 267 insertions(+), 156 deletions(-)
Title: Various Tools and Data for Quantitative Peace Science
Description: These are useful tools and data sets for the study of quantitative
peace science. The goal for this package is to include tools and data sets
for doing original research that mimics well what a user would have to previously
get from a software package that may not be well-sourced or well-supported.
Those software bundles were useful the extent to which they encourage replications
of long-standing analyses by starting the data-generating process from scratch. However,
a lot of the functionality can be done relatively quickly and more transparently
in the R programming language.
Author: Steve Miller [aut, cre] (<https://orcid.org/0000-0003-4072-6263>)
Maintainer: Steve Miller <steven.v.miller@gmail.com>
Diff between peacesciencer versions 0.2.0 dated 2021-03-05 and 0.3.0 dated 2021-04-28
DESCRIPTION | 8 - MD5 | 104 +++++++++++------- NEWS.md | 18 +++ R/add_archigos.R |only R/add_atop_alliance.R |only R/add_capital_distance.R | 27 +++- R/add_contiguity.R | 21 +++ R/add_cow_alliance.R | 17 ++- R/add_cow_majors.R | 28 ++++ R/add_cow_trade.R | 27 ++++ R/add_democracy.R | 26 ++++ R/add_gwcode_to_cow.R | 30 ++++- R/add_igos.R | 27 ++++ R/add_mids.R | 17 ++- R/add_minimum_distance.R |only R/add_nmc.R | 28 ++++ R/add_sdp_gdp.R |only R/add_ucdp_onsets.R |only R/create_dyadyears.R | 2 R/create_statedays.R | 4 R/create_stateyears.R | 4 R/data.R | 186 +++++++++++++++++++++++++++++++-- R/filter_prd.R | 24 +++- R/zzz.R | 4 README.md | 94 ++++++++++++---- build/partial.rdb |binary data/archigos.rda |only data/atop_alliance.rda |only data/ccode_democracy.rda |binary data/citations.rda |binary data/cow_alliance.rda |binary data/cow_sdp_gdp.rda |only data/gw_sdp_gdp.rda |only data/ucdp_acd.rda |only data/ucdp_onsets.rda |only man/add_archigos.Rd |only man/add_atop_alliance.Rd |only man/add_capital_distance.Rd | 5 man/add_contiguity.Rd | 4 man/add_cow_alliance.Rd | 5 man/add_cow_majors.Rd | 5 man/add_cow_trade.Rd | 5 man/add_democracy.Rd | 5 man/add_gwcode_to_cow.Rd | 6 - man/add_igos.Rd | 5 man/add_mids.Rd | 3 man/add_minimum_distance.Rd |only man/add_nmc.Rd | 5 man/add_sdp_gdp.Rd |only man/add_ucdp_onsets.Rd |only man/archigos.Rd |only man/atop_alliance.Rd |only man/ccode_democracy.Rd | 2 man/cow_alliance.Rd | 8 - man/cow_sdp_gdp.Rd |only man/cow_trade_sy.Rd | 2 man/create_dyadyears.Rd | 2 man/create_statedays.Rd | 4 man/create_stateyears.Rd | 4 man/filter_prd.Rd | 5 man/gw_sdp_gdp.Rd |only man/ucdp_acd.Rd |only man/ucdp_onsets.Rd |only tests/testthat/test_nodamnduplicates.R | 9 + 64 files changed, 617 insertions(+), 163 deletions(-)
Title: Access the System Credential Store from R
Description: Platform independent 'API' to access the operating system's
credential store. Currently supports: 'Keychain' on 'macOS', Credential
Store on 'Windows', the Secret Service 'API' on 'Linux', and a simple,
platform independent store implemented with environment variables.
Additional storage back-ends can be added easily.
Author: Gábor Csárdi [aut, cre],
Alec Wong [ctb],
RStudio [cph]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between keyring versions 1.1.0 dated 2018-07-16 and 1.2.0 dated 2021-04-28
keyring-1.1.0/keyring/man/keyring.Rd |only keyring-1.1.0/keyring/tests/testthat/RkeyringtestAInJgFhN.lck |only keyring-1.1.0/keyring/tests/testthat/RkeyringtestJjqIoCFx |only keyring-1.1.0/keyring/tests/testthat/RkeyringtestJjqIoCFx.lck |only keyring-1.1.0/keyring/tests/testthat/RkeyringtestUStFddkA.lck |only keyring-1.1.0/keyring/tests/testthat/RkeyringtestoOrHMNgB.lck |only keyring-1.1.0/keyring/tests/testthat/RkeyringtestqEwLpisK.lck |only keyring-1.2.0/keyring/DESCRIPTION | 16 - keyring-1.2.0/keyring/MD5 | 84 +++--- keyring-1.2.0/keyring/NAMESPACE | 2 keyring-1.2.0/keyring/NEWS.md | 19 + keyring-1.2.0/keyring/R/api.R | 40 +++ keyring-1.2.0/keyring/R/backend-class.R | 5 keyring-1.2.0/keyring/R/backend-env.R | 12 keyring-1.2.0/keyring/R/backend-file.R | 86 +++++- keyring-1.2.0/keyring/R/backend-macos.R | 34 +- keyring-1.2.0/keyring/R/backend-secret-service.R | 42 ++- keyring-1.2.0/keyring/R/backend-wincred.R | 97 ++++++- keyring-1.2.0/keyring/R/default_backend.R | 4 keyring-1.2.0/keyring/R/package.R | 8 keyring-1.2.0/keyring/R/pass.R | 9 keyring-1.2.0/keyring/R/utils.R | 40 +++ keyring-1.2.0/keyring/README.md | 126 +++++----- keyring-1.2.0/keyring/cleanup | 2 keyring-1.2.0/keyring/configure | 8 keyring-1.2.0/keyring/inst/development-notes.md | 2 keyring-1.2.0/keyring/man/b_wincred_decode.Rd |only keyring-1.2.0/keyring/man/b_wincred_decode_auto.Rd |only keyring-1.2.0/keyring/man/b_wincred_get.Rd | 6 keyring-1.2.0/keyring/man/b_wincred_set_with_raw_value.Rd | 21 + keyring-1.2.0/keyring/man/backend.Rd | 7 keyring-1.2.0/keyring/man/backend_env.Rd | 18 - keyring-1.2.0/keyring/man/backend_file.Rd | 18 - keyring-1.2.0/keyring/man/backend_keyrings.Rd | 6 keyring-1.2.0/keyring/man/backend_macos.Rd | 20 - keyring-1.2.0/keyring/man/backend_secret_service.Rd | 19 - keyring-1.2.0/keyring/man/backend_wincred.Rd | 19 - keyring-1.2.0/keyring/man/backends.Rd | 1 keyring-1.2.0/keyring/man/has_keyring_support.Rd | 2 keyring-1.2.0/keyring/man/key_get.Rd | 49 +++ keyring-1.2.0/keyring/man/keyring-package.Rd |only keyring-1.2.0/keyring/src/init.c |only keyring-1.2.0/keyring/src/keyring_macos.c | 81 ++++-- keyring-1.2.0/keyring/src/keyring_secret_service.c | 111 ++++---- keyring-1.2.0/keyring/src/keyring_wincred.c | 43 ++- keyring-1.2.0/keyring/tests/testthat/test-common.R | 16 + keyring-1.2.0/keyring/tests/testthat/test-default-backend.R | 4 keyring-1.2.0/keyring/tests/testthat/test-encoding.R |only keyring-1.2.0/keyring/tests/testthat/test-file.R | 14 - 49 files changed, 714 insertions(+), 377 deletions(-)
Title: Tool for Diagnosis of Tables Joins and Complementary Join
Features
Description: Tool for diagnosing table joins. It combines the speed
`data.table`, the flexibility of `dplyr`, and the diagnosis and features of
the `merge` command in `Stata`.
Author: R.Andres Castaneda [aut, cre]
Maintainer: R.Andres Castaneda <acastanedaa@worldbank.org>
Diff between joyn versions 0.0.1 dated 2021-04-02 and 0.1.3 dated 2021-04-28
joyn-0.0.1/joyn/R/join_consistency.R |only joyn-0.0.1/joyn/data |only joyn-0.1.3/joyn/DESCRIPTION | 13 - joyn-0.1.3/joyn/MD5 | 53 ++-- joyn-0.1.3/joyn/NAMESPACE | 19 + joyn-0.1.3/joyn/NEWS.md | 22 + joyn-0.1.3/joyn/R/data.R | 17 + joyn-0.1.3/joyn/R/freq_table.R |only joyn-0.1.3/joyn/R/is_id.R |only joyn-0.1.3/joyn/R/merge.R | 113 +++++---- joyn-0.1.3/joyn/R/possible_ids.R |only joyn-0.1.3/joyn/R/sysdata.rda |only joyn-0.1.3/joyn/R/zzz.R | 3 joyn-0.1.3/joyn/README.md | 167 +++++++------- joyn-0.1.3/joyn/build/vignette.rds |binary joyn-0.1.3/joyn/inst/doc/advanced-use.R | 2 joyn-0.1.3/joyn/inst/doc/advanced-use.Rmd | 11 joyn-0.1.3/joyn/inst/doc/advanced-use.html | 92 ++++---- joyn-0.1.3/joyn/inst/doc/general-use.R | 2 joyn-0.1.3/joyn/inst/doc/general-use.Rmd | 32 +- joyn-0.1.3/joyn/inst/doc/general-use.html | 238 ++++++++++++--------- joyn-0.1.3/joyn/man/freq_table.Rd |only joyn-0.1.3/joyn/man/is_id.Rd |only joyn-0.1.3/joyn/man/possible_ids.Rd |only joyn-0.1.3/joyn/tests/testthat/test-freq_table.R |only joyn-0.1.3/joyn/tests/testthat/test-is_id.R |only joyn-0.1.3/joyn/tests/testthat/test-merge.R | 68 +++++- joyn-0.1.3/joyn/tests/testthat/test-possible_ids.R |only joyn-0.1.3/joyn/vignettes/advanced-use.Rmd | 11 joyn-0.1.3/joyn/vignettes/general-use.Rmd | 32 +- 30 files changed, 540 insertions(+), 355 deletions(-)
Title: Statistical Tests and Graphics for Hardy-Weinberg Equilibrium
Description: Contains tools for exploring Hardy-Weinberg equilibrium (Hardy, 1908; Weinberg, 1908) <doi:10.1126/science.28.706.49> for bi and multi-allelic genetic marker data. All classical tests (chi-square, exact, likelihood-ratio and permutation tests) with bi-allelic variants are included in the package, as well as functions for power computation and for the simulation of marker data under equilibrium and disequilibrium. Routines for dealing with markers on the X-chromosome are included (Graffelman & Weir, 2016) <doi: 10.1038/hdy.2016.20>, including Bayesian procedures. Some exact and permutation procedures also work with multi-allelic variants. Special test procedures that jointly address Hardy-Weinberg equilibrium and equality of allele frequencies in both sexes are supplied, for the bi and multi-allelic case. Functions for testing equilibrium in the presence of missing data by using multiple imputation are also provided. Implements several graphics for exploring the equilibrium status of a large set of bi-allelic markers: ternary plots with acceptance regions, log-ratio plots and Q-Q plots.
Author: Jan Graffelman [aut, cre],
Christopher Chang [ctb],
Xavi Puig [ctb],
Jan Wigginton [ctb],
Leonardo Ortoleva [ctb],
William R. Engels [ctb]
Maintainer: Jan Graffelman <jan.graffelman@upc.edu>
Diff between HardyWeinberg versions 1.7.1 dated 2021-01-04 and 1.7.2 dated 2021-04-28
DESCRIPTION | 8 MD5 | 30 +- NAMESPACE | 3 R/AllelesToTriangular.R |only R/HWPerm.mult.R | 458 ++++++++++--------------------------------- build/partial.rdb |binary build/vignette.rds |binary data/NistSTRs.rda |only data/TSIXTriAllelics.rda |binary inst/doc/HardyWeinberg.R | 12 + inst/doc/HardyWeinberg.Rnw | 18 + inst/doc/HardyWeinberg.pdf |binary man/AllelesToTriangular.Rd |only man/HWPerm.mult.Rd | 12 + man/HardyWeinberg-package.Rd | 4 man/NistSTRs.Rd |only man/TSIXTriAllelics.Rd | 20 - vignettes/HardyWeinberg.Rnw | 18 + 18 files changed, 196 insertions(+), 387 deletions(-)
Title: Access the 'Windsor.ai' API
Description: Collect multichannel marketing data from sources such as Google analytics, Facebook Ads, and many others using the 'Windsor.ai' API <https://www.windsor.ai/api-fields/>.
Author: Novica Nakov [aut, cre],
Windsor.ai [cph]
Maintainer: Novica Nakov <nnovica@gmail.com>
Diff between windsoraiR versions 0.1.0 dated 2021-04-21 and 0.1.1 dated 2021-04-28
windsoraiR-0.1.0/windsoraiR/inst/doc/windsoraiR.R |only windsoraiR-0.1.0/windsoraiR/inst/doc/windsoraiR.Rmd |only windsoraiR-0.1.0/windsoraiR/inst/doc/windsoraiR.html |only windsoraiR-0.1.0/windsoraiR/vignettes/windsoraiR.Rmd |only windsoraiR-0.1.1/windsoraiR/DESCRIPTION | 10 +++++----- windsoraiR-0.1.1/windsoraiR/MD5 | 14 +++++++------- windsoraiR-0.1.1/windsoraiR/NEWS.md | 6 ++++++ windsoraiR-0.1.1/windsoraiR/build/vignette.rds |binary windsoraiR-0.1.1/windsoraiR/inst/doc/basics.R |only windsoraiR-0.1.1/windsoraiR/inst/doc/basics.Rmd |only windsoraiR-0.1.1/windsoraiR/inst/doc/basics.html |only windsoraiR-0.1.1/windsoraiR/vignettes/basics.Rmd |only 12 files changed, 18 insertions(+), 12 deletions(-)
Title: A 'ggplot2' Implement of Venn Diagram
Description: Easy-to-use functions to generate 2-7 sets Venn plot in publication quality.
Author: Chun-Hui Gao [aut, cre] (<https://orcid.org/0000-0002-1445-7939>),
Guangchuang Yu [ctb] (<https://orcid.org/0000-0002-6485-8781>)
Maintainer: Chun-Hui Gao <gaospecial@gmail.com>
Diff between ggVennDiagram versions 0.5.0 dated 2021-02-28 and 1.0.7 dated 2021-04-28
ggVennDiagram-0.5.0/ggVennDiagram/R/draw_2d_venn.R |only ggVennDiagram-0.5.0/ggVennDiagram/R/draw_3d_venn.R |only ggVennDiagram-0.5.0/ggVennDiagram/R/draw_4d_venn.R |only ggVennDiagram-0.5.0/ggVennDiagram/R/multi_implement.R |only ggVennDiagram-0.5.0/ggVennDiagram/man/draw_venn.Rd |only ggVennDiagram-0.5.0/ggVennDiagram/man/get_region_items.Rd |only ggVennDiagram-0.5.0/ggVennDiagram/man/multi.Rd |only ggVennDiagram-0.5.0/ggVennDiagram/man/multi_st_fun.Rd |only ggVennDiagram-0.5.0/ggVennDiagram/man/region_item.Rd |only ggVennDiagram-0.5.0/ggVennDiagram/man/region_polygon.Rd |only ggVennDiagram-0.5.0/ggVennDiagram/man/region_value.Rd |only ggVennDiagram-0.5.0/ggVennDiagram/tests/testthat/test-multi_implement.R |only ggVennDiagram-1.0.7/ggVennDiagram/DESCRIPTION | 13 ggVennDiagram-1.0.7/ggVennDiagram/MD5 | 83 ++- ggVennDiagram-1.0.7/ggVennDiagram/NAMESPACE | 45 + ggVennDiagram-1.0.7/ggVennDiagram/NEWS.md | 13 ggVennDiagram-1.0.7/ggVennDiagram/R/Construct.R |only ggVennDiagram-1.0.7/ggVennDiagram/R/SetOperations.R |only ggVennDiagram-1.0.7/ggVennDiagram/R/build_shape.R |only ggVennDiagram-1.0.7/ggVennDiagram/R/ggVennDiagram.R | 176 +++--- ggVennDiagram-1.0.7/ggVennDiagram/R/plot_shapes.R |only ggVennDiagram-1.0.7/ggVennDiagram/R/process_data.R |only ggVennDiagram-1.0.7/ggVennDiagram/R/regions.R |only ggVennDiagram-1.0.7/ggVennDiagram/R/shape_generator.R |only ggVennDiagram-1.0.7/ggVennDiagram/R/sysdata.rda |only ggVennDiagram-1.0.7/ggVennDiagram/R/utils-pipe.R |only ggVennDiagram-1.0.7/ggVennDiagram/README.md | 268 ++++++---- ggVennDiagram-1.0.7/ggVennDiagram/man/Polygon-class.Rd |only ggVennDiagram-1.0.7/ggVennDiagram/man/Venn-class.Rd |only ggVennDiagram-1.0.7/ggVennDiagram/man/VennPlotData-class.Rd |only ggVennDiagram-1.0.7/ggVennDiagram/man/VennPlotData.Rd |only ggVennDiagram-1.0.7/ggVennDiagram/man/build_shape.Rd |only ggVennDiagram-1.0.7/ggVennDiagram/man/circle.Rd | 46 - ggVennDiagram-1.0.7/ggVennDiagram/man/combinations.Rd |only ggVennDiagram-1.0.7/ggVennDiagram/man/discern-Polygon-method.Rd |only ggVennDiagram-1.0.7/ggVennDiagram/man/discern_overlap.Rd |only ggVennDiagram-1.0.7/ggVennDiagram/man/ellipse.Rd |only ggVennDiagram-1.0.7/ggVennDiagram/man/fancy_4d_ellipse.Rd |only ggVennDiagram-1.0.7/ggVennDiagram/man/figures/README-example-1.png |binary ggVennDiagram-1.0.7/ggVennDiagram/man/figures/README-example-2.png |binary ggVennDiagram-1.0.7/ggVennDiagram/man/figures/README-example-3.png |binary ggVennDiagram-1.0.7/ggVennDiagram/man/figures/README-unnamed-chunk-10-1.png |only ggVennDiagram-1.0.7/ggVennDiagram/man/figures/README-unnamed-chunk-12-1.png |only ggVennDiagram-1.0.7/ggVennDiagram/man/figures/README-unnamed-chunk-2-1.png |binary ggVennDiagram-1.0.7/ggVennDiagram/man/figures/README-unnamed-chunk-2-2.png |binary ggVennDiagram-1.0.7/ggVennDiagram/man/figures/README-unnamed-chunk-3-1.png |binary ggVennDiagram-1.0.7/ggVennDiagram/man/figures/README-unnamed-chunk-3-2.png |binary ggVennDiagram-1.0.7/ggVennDiagram/man/figures/README-unnamed-chunk-4-1.png |binary ggVennDiagram-1.0.7/ggVennDiagram/man/figures/README-unnamed-chunk-4-2.png |only ggVennDiagram-1.0.7/ggVennDiagram/man/figures/README-unnamed-chunk-5-1.png |only ggVennDiagram-1.0.7/ggVennDiagram/man/get_shape_data.Rd |only ggVennDiagram-1.0.7/ggVennDiagram/man/ggVennDiagram-package.Rd |only ggVennDiagram-1.0.7/ggVennDiagram/man/ggVennDiagram.Rd | 25 ggVennDiagram-1.0.7/ggVennDiagram/man/label_position.Rd |only ggVennDiagram-1.0.7/ggVennDiagram/man/overlap-Polygon-method.Rd |only ggVennDiagram-1.0.7/ggVennDiagram/man/pipe.Rd |only ggVennDiagram-1.0.7/ggVennDiagram/man/plot_shapes.Rd |only ggVennDiagram-1.0.7/ggVennDiagram/man/plot_venn.Rd | 33 - ggVennDiagram-1.0.7/ggVennDiagram/man/polygon-methods.Rd |only ggVennDiagram-1.0.7/ggVennDiagram/man/process_data.Rd |only ggVennDiagram-1.0.7/ggVennDiagram/man/shape_generator.Rd |only ggVennDiagram-1.0.7/ggVennDiagram/man/triangle.Rd |only ggVennDiagram-1.0.7/ggVennDiagram/man/venn_data.Rd |only ggVennDiagram-1.0.7/ggVennDiagram/tests/testthat/test-4d-venn.R |only ggVennDiagram-1.0.7/ggVennDiagram/tests/testthat/test-class-Polygon.R |only ggVennDiagram-1.0.7/ggVennDiagram/tests/testthat/test-class-Venn.R |only ggVennDiagram-1.0.7/ggVennDiagram/tests/testthat/test-discern_overlap.R |only ggVennDiagram-1.0.7/ggVennDiagram/tests/testthat/test-memory_usage.R |only 68 files changed, 405 insertions(+), 297 deletions(-)
Title: Tensors and Neural Networks with 'GPU' Acceleration
Description: Provides functionality to define and train neural networks similar to
'PyTorch' by Paszke et al (2019) <arXiv:1912.01703> but written entirely in R
using the 'libtorch' library. Also supports low-level tensor operations and
'GPU' acceleration.
Author: Daniel Falbel [aut, cre, cph],
Javier Luraschi [aut],
Dmitriy Selivanov [ctb],
Athos Damiani [ctb],
Christophe Regouby [ctb],
Krzysztof Joachimiak [ctb],
RStudio [cph]
Maintainer: Daniel Falbel <daniel@rstudio.com>
Diff between torch versions 0.2.1 dated 2021-01-05 and 0.3.0 dated 2021-04-28
torch-0.2.1/torch/R/tensor_list.R |only torch-0.2.1/torch/man/figures/torch-full.png |only torch-0.2.1/torch/man/torch_fft.Rd |only torch-0.2.1/torch/man/torch_ifft.Rd |only torch-0.2.1/torch/man/torch_irfft.Rd |only torch-0.2.1/torch/man/torch_rfft.Rd |only torch-0.2.1/torch/tests/testthat/test-tensor_list.R |only torch-0.2.1/torch/tools/torchgen/inst/declaration/Declarations-1.3.0.yaml |only torch-0.2.1/torch/tools/torchgen/inst/declaration/Declarations-1.4.0.yaml |only torch-0.2.1/torch/tools/torchgen/inst/declaration/Declarations-1.5.0.yaml |only torch-0.2.1/torch/tools/torchgen/inst/declaration/Declarations-1.7.1.yaml |only torch-0.3.0/torch/DESCRIPTION | 51 torch-0.3.0/torch/MD5 | 354 torch-0.3.0/torch/NAMESPACE | 24 torch-0.3.0/torch/NEWS.md | 61 torch-0.3.0/torch/R/R7.R | 66 torch-0.3.0/torch/R/RcppExports.R | 1356 torch-0.3.0/torch/R/autograd.R | 15 torch-0.3.0/torch/R/backends.R | 23 torch-0.3.0/torch/R/codegen-utils.R | 242 torch-0.3.0/torch/R/creation-ops.R | 47 torch-0.3.0/torch/R/device.R | 11 torch-0.3.0/torch/R/dimname_list.R | 26 torch-0.3.0/torch/R/distributions-bernoulli.R |only torch-0.3.0/torch/R/distributions-chi2.R |only torch-0.3.0/torch/R/distributions-constraints.R | 79 torch-0.3.0/torch/R/distributions-exp-family.R | 2 torch-0.3.0/torch/R/distributions-gamma.R |only torch-0.3.0/torch/R/distributions-normal.R |only torch-0.3.0/torch/R/distributions-poisson.R |only torch-0.3.0/torch/R/distributions-utils.R |only torch-0.3.0/torch/R/distributions.R | 246 torch-0.3.0/torch/R/dtype.R | 12 torch-0.3.0/torch/R/gen-method.R | 628 torch-0.3.0/torch/R/gen-namespace-docs.R | 369 torch-0.3.0/torch/R/gen-namespace-examples.R | 67 torch-0.3.0/torch/R/gen-namespace.R | 3523 + torch-0.3.0/torch/R/generator.R | 13 torch-0.3.0/torch/R/help.R | 2 torch-0.3.0/torch/R/install.R | 179 torch-0.3.0/torch/R/lantern_load.R | 2 torch-0.3.0/torch/R/memory_format.R | 8 torch-0.3.0/torch/R/nn-activation.R | 8 torch-0.3.0/torch/R/nn-init.R | 2 torch-0.3.0/torch/R/nn-loss.R | 6 torch-0.3.0/torch/R/nn-normalization.R |only torch-0.3.0/torch/R/nn-rnn.R | 76 torch-0.3.0/torch/R/nn-utils-rnn.R | 18 torch-0.3.0/torch/R/nn.R | 14 torch-0.3.0/torch/R/nnf-activation.R | 42 torch-0.3.0/torch/R/nnf-normalization.R | 9 torch-0.3.0/torch/R/nnf-padding.R | 26 torch-0.3.0/torch/R/operators.R | 10 torch-0.3.0/torch/R/optim-adadelta.R | 126 torch-0.3.0/torch/R/optim-adagrad.R | 183 torch-0.3.0/torch/R/optim-adam.R | 180 torch-0.3.0/torch/R/optim-asgd.R | 118 torch-0.3.0/torch/R/optim-lbfgs.R | 800 torch-0.3.0/torch/R/optim-rmsprop.R | 160 torch-0.3.0/torch/R/optim-rprop.R | 118 torch-0.3.0/torch/R/optim-sgd.R | 124 torch-0.3.0/torch/R/optim.R | 87 torch-0.3.0/torch/R/package.R | 2 torch-0.3.0/torch/R/save.R | 35 torch-0.3.0/torch/R/scalar.R | 15 torch-0.3.0/torch/R/stack.R | 4 torch-0.3.0/torch/R/tensor.R | 41 torch-0.3.0/torch/R/tensor_options.R | 37 torch-0.3.0/torch/R/utils-data-collate.R | 13 torch-0.3.0/torch/R/utils-data-dataloader.R | 76 torch-0.3.0/torch/R/utils-data.R | 56 torch-0.3.0/torch/R/utils.R | 37 torch-0.3.0/torch/R/wrapers.R | 146 torch-0.3.0/torch/README.md | 16 torch-0.3.0/torch/build/vignette.rds |binary torch-0.3.0/torch/inst/doc/distributions.R |only torch-0.3.0/torch/inst/doc/distributions.Rmd |only torch-0.3.0/torch/inst/doc/distributions.html |only torch-0.3.0/torch/inst/doc/extending-autograd.R | 96 torch-0.3.0/torch/inst/doc/extending-autograd.html | 321 torch-0.3.0/torch/inst/doc/indexing.R | 60 torch-0.3.0/torch/inst/doc/indexing.html | 375 torch-0.3.0/torch/inst/doc/installation.R | 10 torch-0.3.0/torch/inst/doc/installation.Rmd | 52 torch-0.3.0/torch/inst/doc/installation.html | 269 torch-0.3.0/torch/inst/doc/loading-data.R | 160 torch-0.3.0/torch/inst/doc/loading-data.html | 468 torch-0.3.0/torch/inst/doc/python-to-r.R |only torch-0.3.0/torch/inst/doc/python-to-r.Rmd |only torch-0.3.0/torch/inst/doc/python-to-r.html |only torch-0.3.0/torch/inst/doc/serialization.R | 52 torch-0.3.0/torch/inst/doc/serialization.html | 282 torch-0.3.0/torch/inst/doc/tensor-creation.R | 32 torch-0.3.0/torch/inst/doc/tensor-creation.html | 299 torch-0.3.0/torch/inst/doc/using-autograd.R | 198 torch-0.3.0/torch/inst/doc/using-autograd.html | 448 torch-0.3.0/torch/man/Constraint.Rd | 18 torch-0.3.0/torch/man/Distribution.Rd |only torch-0.3.0/torch/man/backends_mkl_is_available.Rd |only torch-0.3.0/torch/man/backends_mkldnn_is_available.Rd |only torch-0.3.0/torch/man/backends_openmp_is_available.Rd |only torch-0.3.0/torch/man/broadcast_all.Rd |only torch-0.3.0/torch/man/dataloader.Rd | 37 torch-0.3.0/torch/man/dataset.Rd | 17 torch-0.3.0/torch/man/distr_bernoulli.Rd |only torch-0.3.0/torch/man/distr_chi2.Rd |only torch-0.3.0/torch/man/distr_gamma.Rd |only torch-0.3.0/torch/man/distr_normal.Rd |only torch-0.3.0/torch/man/distr_poisson.Rd |only torch-0.3.0/torch/man/get_install_libs_url.Rd |only torch-0.3.0/torch/man/install_torch.Rd | 11 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Title: Methods to Analyse Signed Networks
Description: Methods for the analysis of signed networks. This includes several measures for structural balance as introduced by Cartwright and Harary (1956) <doi:10.1037/h0046049>, blockmodeling algorithms from Doreian (2008) <doi:10.1016/j.socnet.2008.03.005>, various centrality indices, and projections of signed two-mode networks introduced by Schoch (2020) <doi:10.1080/0022250X.2019.1711376>.
Author: David Schoch [aut, cre]
Maintainer: David Schoch <david.schoch@manchester.ac.uk>
Diff between signnet versions 0.7.0 dated 2020-10-21 and 0.7.1 dated 2021-04-28
DESCRIPTION | 8 MD5 | 30 +-- NEWS.md | 6 R/complex_matrices.R | 9 R/signed_triangles.R | 2 README.md | 4 inst/doc/blockmodeling.html | 324 ++++++--------------------------- inst/doc/centrality.html | 298 +++++------------------------- inst/doc/complex_matrices.html | 292 ++++------------------------- inst/doc/signed_2mode.html | 296 ++++-------------------------- inst/doc/signed_networks.html | 270 +++------------------------ inst/doc/structural_balance.html | 278 ++++------------------------ man/figures/README-block_example-1.png |binary src/RcppExports.cpp | 4 src/optimBlocks.cpp | 4 src/triadCensus.cpp | 58 +++-- 16 files changed, 354 insertions(+), 1529 deletions(-)
Title: Miscellaneous Functions Used at 'Numeract LLC'
Description: Contains functions useful for debugging, set operations on vectors,
and 'UTC' date and time functionality. It adds a few vector manipulation
verbs to 'purrr' and 'dplyr' packages. It can also generate an R file to
install and update packages to simplify deployment into production. The
functions were developed at the data science firm 'Numeract LLC' and are
used in several packages and projects.
Author: Mike Badescu [aut, cre],
Ana-Maria Niculescu [aut],
Teodor Ciuraru [ctb],
Numeract LLC [cph]
Maintainer: Mike Badescu <mike.badescu@numeract.com>
Diff between Nmisc versions 0.3.5 dated 2018-11-07 and 0.3.7 dated 2021-04-28
Nmisc-0.3.5/Nmisc/tests/testthat/test_warn.R |only Nmisc-0.3.7/Nmisc/DESCRIPTION | 9 ++++----- Nmisc-0.3.7/Nmisc/MD5 | 11 +++++------ Nmisc-0.3.7/Nmisc/NEWS.md | 5 +++++ Nmisc-0.3.7/Nmisc/README.md | 2 -- Nmisc-0.3.7/Nmisc/man/generate_install_file.Rd | 7 +++++-- Nmisc-0.3.7/Nmisc/man/get_packages.Rd | 9 ++++++--- 7 files changed, 25 insertions(+), 18 deletions(-)
Title: Ensemble Sampler for Affine-Invariant MCMC
Description: Provides ensemble samplers for
affine-invariant Monte Carlo Markov Chain, which allow a faster
convergence for badly scaled estimation problems. Two samplers are
proposed: the 'differential.evolution' sampler from ter Braak and
Vrugt (2008) <doi:10.1007/s11222-008-9104-9> and the 'stretch' sampler
from Goodman and Weare (2010) <doi:10.2140/camcos.2010.5.65>.
Author: Hugo Gruson [cre, aut, cph] (<https://orcid.org/0000-0002-4094-1476>),
Sanda Dejanic [aut, cph],
Andreas Scheidegger [aut, cph]
(<https://orcid.org/0000-0003-2575-2172>)
Maintainer: Hugo Gruson <hugo.gruson+R@normalesup.org>
Diff between mcmcensemble versions 2.2.0 dated 2021-02-20 and 3.0.0 dated 2021-04-28
mcmcensemble-2.2.0/mcmcensemble/man/d.e.mcmc.Rd |only mcmcensemble-2.2.0/mcmcensemble/man/s.m.mcmc.Rd |only mcmcensemble-3.0.0/mcmcensemble/DESCRIPTION | 9 mcmcensemble-3.0.0/mcmcensemble/MD5 | 43 mcmcensemble-3.0.0/mcmcensemble/NAMESPACE | 2 mcmcensemble-3.0.0/mcmcensemble/NEWS.md | 27 mcmcensemble-3.0.0/mcmcensemble/R/MCMCEnsemble.R | 65 mcmcensemble-3.0.0/mcmcensemble/R/d.e.mcmc.R | 28 mcmcensemble-3.0.0/mcmcensemble/R/s.m.mcmc.R | 24 mcmcensemble-3.0.0/mcmcensemble/README.md | 91 mcmcensemble-3.0.0/mcmcensemble/build/partial.rdb |binary mcmcensemble-3.0.0/mcmcensemble/build/vignette.rds |binary mcmcensemble-3.0.0/mcmcensemble/inst/doc/diagnostic-pkgs.R |only mcmcensemble-3.0.0/mcmcensemble/inst/doc/diagnostic-pkgs.Rmd |only mcmcensemble-3.0.0/mcmcensemble/inst/doc/diagnostic-pkgs.html |only mcmcensemble-3.0.0/mcmcensemble/inst/doc/faq.R | 42 mcmcensemble-3.0.0/mcmcensemble/inst/doc/faq.Rmd | 61 mcmcensemble-3.0.0/mcmcensemble/inst/doc/faq.html | 183 mcmcensemble-3.0.0/mcmcensemble/man/MCMCEnsemble.Rd | 37 mcmcensemble-3.0.0/mcmcensemble/man/figures/README-example-de-1.svg | 1844 ++++++--- mcmcensemble-3.0.0/mcmcensemble/man/figures/README-example-stretch-1.svg | 1850 ++++++---- mcmcensemble-3.0.0/mcmcensemble/tests/testthat/test-MCMCEnsemble.R | 48 mcmcensemble-3.0.0/mcmcensemble/tests/testthat/test-convergence.R | 13 mcmcensemble-3.0.0/mcmcensemble/vignettes/blog |only mcmcensemble-3.0.0/mcmcensemble/vignettes/diagnostic-pkgs.Rmd |only mcmcensemble-3.0.0/mcmcensemble/vignettes/faq.Rmd | 61 26 files changed, 2730 insertions(+), 1698 deletions(-)
Title: Genomic Regression Workbench
Description: Workbench for testing genomic regression accuracy on (optionally noisy) phenotypes.
Author: Nelson Nazzicari & Filippo Biscarini
Maintainer: Nelson Nazzicari <nelson.nazzicari@gmail.com>
Diff between GROAN versions 1.2.0 dated 2018-10-11 and 1.2.1 dated 2021-04-28
DESCRIPTION | 12 MD5 | 60 +-- NEWS | 3 R/common.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/GROAN.vignette.R | 54 +- inst/doc/GROAN.vignette.Rmd | 2 inst/doc/GROAN.vignette.html | 755 ++++++++++++++++++++++++++------------- man/GROAN.AI.Rd | 6 man/GROAN.KI.Rd | 6 man/GROAN.pea.SNPs.Rd | 6 man/GROAN.pea.kinship.Rd | 6 man/GROAN.pea.yield.Rd | 4 man/artificialPhenotypes.Rd | 9 man/createNoisyDataset.Rd | 14 man/createWorkbench.Rd | 13 man/is.naturalnumber.Rd | 2 man/noiseInjector.dummy.Rd | 7 man/noiseInjector.norm.Rd | 7 man/noiseInjector.swapper.Rd | 7 man/noiseInjector.unif.Rd | 7 man/phenoRegressor.BGLR.Rd | 20 - man/phenoRegressor.RFR.Rd | 21 - man/phenoRegressor.SVR.Rd | 35 + man/phenoRegressor.dummy.Rd | 9 man/phenoRegressor.rrBLUP.G.Rd | 3 man/phenoRegressor.rrBLUP.Rd | 18 man/phenoRegressor.rrBLUP.SNP.Rd | 3 man/plotResult.Rd | 11 vignettes/GROAN.vignette.Rmd | 2 31 files changed, 720 insertions(+), 384 deletions(-)
Title: Weighted Subspace Random Forest for Classification
Description: A parallel implementation of Weighted Subspace Random Forest. The
Weighted Subspace Random Forest algorithm was proposed in the
International Journal of Data Warehousing and Mining by Baoxun Xu,
Joshua Zhexue Huang, Graham Williams, Qiang Wang, and Yunming Ye
(2012) <DOI:10.4018/jdwm.2012040103>. The algorithm can classify
very high-dimensional data with random forests built using small
subspaces. A novel variable weighting method is used for variable
subspace selection in place of the traditional random variable
sampling.This new approach is particularly useful in building
models from high-dimensional data.
Author: Qinghan Meng [aut],
He Zhao [aut, cre] (<https://orcid.org/0000-0001-5763-9743>),
Graham J. Williams [aut] (<https://orcid.org/0000-0001-7041-4127>),
Junchao Lv [aut],
Baoxun Xu [aut],
Joshua Zhexue Huang [aut] (<https://orcid.org/0000-0002-6797-2571>)
Maintainer: He Zhao <Simon.Yansen.Zhao@gmail.com>
Diff between wsrf versions 1.7.20 dated 2021-04-24 and 1.7.21 dated 2021-04-28
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- inst/NEWS.Rd | 14 +++++++++++++- inst/doc/wsrf-guide.html | 4 ++-- 4 files changed, 22 insertions(+), 10 deletions(-)
Title: Causal Inference using Multivariate Generalized Propensity Score
Description: Methods for estimating and utilizing the multivariate generalized propensity score (mvGPS) for multiple continuous exposures described in Williams, J.R, and Crespi, C.M. (2020) <arxiv:2008.13767>. The methods allow estimation of a dose-response surface relating the joint distribution of multiple continuous exposure variables to an outcome. Weights are constructed assuming a multivariate normal density for the marginal and conditional distribution of exposures given a set of confounders. Confounders can be different for different exposure variables. The weights are designed to achieve balance across all exposure dimensions and can be used to estimate dose-response surfaces.
Author: Justin Williams [aut, cre] (<https://orcid.org/0000-0002-5045-2764>)
Maintainer: Justin Williams <williazo@ucla.edu>
Diff between mvGPS versions 1.0.2 dated 2020-09-17 and 1.1.1 dated 2021-04-28
DESCRIPTION | 8 - MD5 | 25 ++--- NAMESPACE | 1 NEWS | 3 R/bal.R | 43 ++++++-- R/hull_sample.R | 11 +- R/mvGPS.R | 1 build/partial.rdb |binary inst/WORDLIST |only inst/doc/mvGPS-intro.html | 72 ++++++++++++++- man/hull_sample.Rd | 11 ++ tests/testthat/test-bal.R | 8 - vignettes/mvGPS-intro_files/figure-html/chull_plot-1.png |binary vignettes/mvGPS-intro_files/figure-html/dag_draw-1.png |binary 14 files changed, 143 insertions(+), 40 deletions(-)
Title: Tables of Descriptive Statistics in HTML
Description: Create HTML tables of descriptive statistics, as one would expect
to see as the first table (i.e. "Table 1") in a medical/epidemiological journal
article.
Author: Benjamin Rich [aut, cre, cph]
Maintainer: Benjamin Rich <mail@benjaminrich.net>
Diff between table1 versions 1.3 dated 2021-03-28 and 1.4 dated 2021-04-28
DESCRIPTION | 15 MD5 | 76 NAMESPACE | 88 NEWS.md | 159 - R/eqcut.R | 310 +- R/t1read.R | 208 - R/table1.R | 2626 ++++++++++-------- README.md | 142 build/vignette.rds |binary inst/doc/table1-examples.R | 412 +- inst/doc/table1-examples.Rmd | 1040 +++---- inst/doc/table1-examples.html | 3850 +++++++++++++-------------- inst/doc/table1-latex.R |only inst/doc/table1-latex.Rmd |only inst/doc/table1-latex.pdf |only inst/table1_defaults_1.0/table1_defaults.css | 202 - man/as.data.frame.table1.Rd |only man/eqcut.Rd | 218 - man/knit_print.table1.Rd | 36 man/label.Rd | 78 man/parse.abbrev.render.code.Rd | 108 man/print.table1.Rd | 46 man/render.categorical.default.Rd | 66 man/render.continuous.default.Rd | 60 man/render.default.Rd | 140 man/render.missing.default.Rd | 58 man/render.strat.default.Rd | 42 man/render.varlabel.Rd | 66 man/signif_pad.Rd | 136 man/stats.apply.rounding.Rd | 124 man/stats.default.Rd | 136 man/subsetp.Rd | 56 man/t1flex.Rd |only man/t1kable.Rd |only man/t1read.Rd | 164 - man/table.rows.Rd | 142 man/table1.Rd | 388 +- man/units.Rd | 72 man/update_html.Rd |only vignettes/style.css | 44 vignettes/table1-examples.Rmd | 1040 +++---- vignettes/table1-latex.Rmd |only vignettes/vignette.css | 416 +- 43 files changed, 6531 insertions(+), 6233 deletions(-)
Title: Analyse Citation Data from Google Scholar
Description: Provides functions to extract citation data from Google
Scholar. Convenience functions are also provided for comparing
multiple scholars and predicting future h-index values.
Author: Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>),
James Keirstead [aut],
Gregory Jefferis [ctb],
Gordon Getzinger [ctb],
Jorge Cimentada [ctb],
Max Czapanskiy [ctb],
Dominique Makowski [ctb]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between scholar versions 0.2.0 dated 2021-01-12 and 0.2.1 dated 2021-04-28
DESCRIPTION | 9 ++++----- MD5 | 4 ++-- build/partial.rdb |binary 3 files changed, 6 insertions(+), 7 deletions(-)
Title: Rank Aggregation with Partition Mallows Model
Description: Rank aggregation aims to achieve a better ranking list given multiple observations. 'PAMA' implements Partition-Mallows model for rank aggregation where the rankers' quality are different. Both Bayesian inference and Maximum likelihood estimation (MLE) are provided. It can handle partial list as well. When covariates information is available, this package can make inference by incorporating the covariate information. More information can be found in the paper "Integrated Partition-Mallows Model and Its Inference for Rank Aggregation".
Author: Wanchuang Zhu [cre, aut]
Maintainer: Wanchuang Zhu <andy.chou.sub@gmail.com>
Diff between PAMA versions 1.0.1 dated 2021-04-18 and 1.1.0 dated 2021-04-28
PAMA-1.0.1/PAMA/R/BARDMallowslikepower.R |only PAMA-1.1.0/PAMA/DESCRIPTION | 8 ++++---- PAMA-1.1.0/PAMA/MD5 | 27 ++++++++++++++------------- PAMA-1.1.0/PAMA/NAMESPACE | 2 ++ PAMA-1.1.0/PAMA/R/PAMA.B.R | 28 ++++++++++++++++++++-------- PAMA-1.1.0/PAMA/R/PAMA.Cov.R | 21 ++++++++++++++++----- PAMA-1.1.0/PAMA/R/PAMA.F.R | 21 +++++++++++++++------ PAMA-1.1.0/PAMA/R/PAMA.PL.R | 25 +++++++++++++++++-------- PAMA-1.1.0/PAMA/R/PAMAlike.R |only PAMA-1.1.0/PAMA/R/fulllikepower.R | 4 ++-- PAMA-1.1.0/PAMA/README.md | 1 + PAMA-1.1.0/PAMA/man/PAMA.B.Rd | 4 +++- PAMA-1.1.0/PAMA/man/PAMA.Cov.Rd | 4 +++- PAMA-1.1.0/PAMA/man/PAMA.F.Rd | 6 ++++-- PAMA-1.1.0/PAMA/man/PAMA.PL.Rd | 4 +++- PAMA-1.1.0/PAMA/man/PAMAlike.Rd |only 16 files changed, 104 insertions(+), 51 deletions(-)
Title: Fast Cross-Validation for Multi-Penalty Ridge Regression
Description: Multi-penalty linear, logistic and cox ridge regression, including estimation of the penalty parameters by efficient (repeated) cross-validation and marginal likelihood maximization. Multiple high-dimensional data types that require penalization are allowed, as well as unpenalized variables. Paired and preferential data types can be specified. See Van de Wiel et al. (2021), <arXiv:2005.09301>.
Author: Mark A. van de Wiel
Maintainer: Mark A. van de Wiel <mark.vdwiel@amsterdamumc.nl>
Diff between multiridge versions 1.5 dated 2021-04-06 and 1.7 dated 2021-04-28
DESCRIPTION | 8 +- MD5 | 16 ++-- R/MultiLambdaCVfun.R | 200 +++++++++++++++++++++++++++++++-------------------- build/partial.rdb |binary man/IWLSCoxridge.Rd | 2 man/IWLSridge.Rd | 1 man/betasout.Rd | 5 + man/fastCV2.Rd | 10 ++ man/setupParallel.Rd | 4 - 9 files changed, 151 insertions(+), 95 deletions(-)
Title: Download and Display Map Tiles
Description: To create maps from tiles, 'maptiles' downloads, composes and
displays tiles from a large number of providers (e.g. 'OpenStreetMap',
'Stamen', 'Esri', 'CARTO', or 'Thunderforest').
Author: Timothée Giraud [cre, aut] (<https://orcid.org/0000-0002-1932-3323>),
Diego Hernangómez [ctb] (<https://orcid.org/0000-0001-8457-4658>),
Robert J. Hijmans [ctb] (<https://orcid.org/0000-0001-5872-2872>)
Maintainer: Timothée Giraud <timothee.giraud@cnrs.fr>
Diff between maptiles versions 0.1.2 dated 2021-04-20 and 0.1.3 dated 2021-04-28
maptiles-0.1.2/maptiles/R/get_tiles_attribution.R |only maptiles-0.1.2/maptiles/R/tiles.R |only maptiles-0.1.3/maptiles/DESCRIPTION | 6 - maptiles-0.1.3/maptiles/MD5 | 24 +++--- maptiles-0.1.3/maptiles/NEWS.md | 6 + maptiles-0.1.3/maptiles/R/get_credit.R |only maptiles-0.1.3/maptiles/R/get_tiles.R | 44 ++++++----- maptiles-0.1.3/maptiles/R/plot_tiles.R |only maptiles-0.1.3/maptiles/R/zzz.R | 4 - maptiles-0.1.3/maptiles/README.md | 53 ++++++-------- maptiles-0.1.3/maptiles/man/figures/README-example-1.png |binary maptiles-0.1.3/maptiles/man/figures/README-example2-1.png |binary maptiles-0.1.3/maptiles/man/get_credit.Rd | 2 maptiles-0.1.3/maptiles/man/get_tiles.Rd | 20 ++--- maptiles-0.1.3/maptiles/man/plot_tiles.Rd | 3 15 files changed, 82 insertions(+), 80 deletions(-)
More information about YatesAlgo.FactorialExp.SR at CRAN
Permanent link
Title: Check Arguments and Generate Readable Error Messages
Description: Provides several validator functions to check if arguments passed
by users have valid types, lengths, etc., and if not, to generate
informative and good-formatted error messages in a consistent style. Also
provides tools for users to create their own validator functions. The
error message style used is adopted from
<https://style.tidyverse.org/error-messages.html>.
Author: Renfei Mao
Maintainer: Renfei Mao <renfeimao@gmail.com>
Diff between erify versions 0.1.0 dated 2021-04-16 and 0.2.0 dated 2021-04-28
erify-0.1.0/erify/R/check.R |only erify-0.1.0/erify/man/validators.Rd |only erify-0.2.0/erify/DESCRIPTION | 10 erify-0.2.0/erify/MD5 | 47 ++- erify-0.2.0/erify/NAMESPACE | 8 erify-0.2.0/erify/NEWS.md |only erify-0.2.0/erify/R/basic.R |only erify-0.2.0/erify/R/binary.R |only erify-0.2.0/erify/R/erify.R | 42 ++- erify-0.2.0/erify/R/internal.R |only erify-0.2.0/erify/R/list.R |only erify-0.2.0/erify/R/single.R |only erify-0.2.0/erify/R/statement.R | 351 +++++++++----------------- erify-0.2.0/erify/R/where.R |only erify-0.2.0/erify/README.md | 77 ++++- erify-0.2.0/erify/build/vignette.rds |binary erify-0.2.0/erify/inst/doc/erify.R | 44 ++- erify-0.2.0/erify/inst/doc/erify.Rmd | 98 +++++-- erify-0.2.0/erify/inst/doc/erify.html | 255 ++++++++++-------- erify-0.2.0/erify/man/Statement.Rd | 39 -- erify-0.2.0/erify/man/back_quote.Rd |only erify-0.2.0/erify/man/check_binary_classes.Rd |only erify-0.2.0/erify/man/check_bool.Rd |only erify-0.2.0/erify/man/check_class.Rd |only erify-0.2.0/erify/man/check_classes.Rd |only erify-0.2.0/erify/man/check_content.Rd |only erify-0.2.0/erify/man/check_length.Rd |only erify-0.2.0/erify/man/check_n.Rd |only erify-0.2.0/erify/man/check_string.Rd |only erify-0.2.0/erify/man/check_type.Rd |only erify-0.2.0/erify/man/check_types.Rd |only erify-0.2.0/erify/man/join.Rd |only erify-0.2.0/erify/man/print_string.Rd |only erify-0.2.0/erify/man/trigger.Rd | 22 - erify-0.2.0/erify/man/where.Rd |only erify-0.2.0/erify/vignettes/erify.Rmd | 98 +++++-- 36 files changed, 596 insertions(+), 495 deletions(-)
Title: A User-Friendly Pipeline for Biomarker Discovery in Single-Cell
Transcriptomics
Description: An open, multi-algorithmic pipeline for easy, fast and efficient
analysis of cellular sub-populations and the molecular signatures that
characterize them. The pipeline consists of four successive steps: data
pre-processing, cellular clustering with pseudo-temporal ordering, defining
differential expressed genes and biomarker identification. More details on
Ghannoum et. al. (2021) <doi:10.3390/ijms22031399>. This package implements
extensions of the work published by Ghannoum et. al. (2019)
<doi:10.1101/700989>.
Author: Salim Ghannoum [aut, cph],
Alvaro Köhn-Luque [aut, ths],
Waldir Leoncio [cre, aut],
Damiano Fantini [ctb]
Maintainer: Waldir Leoncio <w.l.netto@medisin.uio.no>
Diff between DIscBIO versions 1.1.0 dated 2020-11-13 and 1.2.0 dated 2021-04-28
DIscBIO-1.1.0/DIscBIO/tests |only DIscBIO-1.2.0/DIscBIO/DESCRIPTION | 17 - DIscBIO-1.2.0/DIscBIO/MD5 | 25 +- DIscBIO-1.2.0/DIscBIO/NAMESPACE | 1 DIscBIO-1.2.0/DIscBIO/NEWS.md | 15 + DIscBIO-1.2.0/DIscBIO/R/DIscBIO-generic-DEGanalysis2clust.R | 24 +- DIscBIO-1.2.0/DIscBIO/R/DIscBIO-generic-PlotmclustMB.R | 6 DIscBIO-1.2.0/DIscBIO/R/NetAnalysis.R | 6 DIscBIO-1.2.0/DIscBIO/R/Networking.R | 115 ++++-------- DIscBIO-1.2.0/DIscBIO/R/PPI.R | 47 +--- DIscBIO-1.2.0/DIscBIO/R/internal-functions.R | 54 +++++ DIscBIO-1.2.0/DIscBIO/man/Networking.Rd | 10 - DIscBIO-1.2.0/DIscBIO/man/PPI.Rd | 4 DIscBIO-1.2.0/DIscBIO/man/retrieveURL.Rd |only 14 files changed, 179 insertions(+), 145 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-20 0.2.0
2021-01-05 0.1.7
2020-12-12 0.1.6
2020-07-26 0.1.5
2020-05-11 0.1.4
2019-08-01 0.1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-18 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-21 0.1.2
2020-03-28 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-29 0.7.4
2020-12-01 0.7.3
2020-11-15 0.7.2
2020-09-28 0.7.1
2020-01-20 0.7.0
Title: Interface to 'Matba Rofex' Trading API
Description: Execute API calls to the 'Matba Rofex' <https://apihub.primary.com.ar> trading platform. Functionality includes accessing account data and current holdings, retrieving investment quotes, placing and canceling orders, and getting reference data for instruments.
Author: Augusto Hassel [aut, cre],
Juan Francisco Gomez [ctb],
Matba Rofex [cph]
Maintainer: Augusto Hassel <mpi-augusto@primary.com.ar>
Diff between rRofex versions 2.0.3 dated 2020-07-31 and 2.0.5 dated 2021-04-28
DESCRIPTION | 15 +++++++-------- MD5 | 14 +++++++------- NEWS.md | 6 +++++- R/functions.R | 43 +++++++++++++++++++++++++++++-------------- R/functions_websocket.R | 4 ++-- README.md | 2 +- build/rRofex.pdf |binary man/rRofex-package.Rd | 6 +++--- 8 files changed, 54 insertions(+), 36 deletions(-)
Title: Convert Between Bibliography Formats
Description: Read and write 'BibTeX' files. Convert between bibliography
formats, including 'BibTeX', 'BibLaTeX', EndNote, and 'Bibentry'.
Includes a port of the 'bibutils' utilities by Chris Putnam
<https://sourceforge.net/projects/bibutils/>. Supports all
bibliography formats and character encodings implemented in
'bibutils'.
Author: Georgi N. Boshnakov [aut, cre] (R port, R code, modifications to
bibutils' C code, conversion to Bibentry (R and C code)),
Chris Putman [aut] (src/*, author of the bibutils libraries,
https://sourceforge.net/projects/bibutils/),
Richard Mathar [ctb] (src/addsout.c),
Johannes Wilm [ctb] (src/biblatexin.c, src/bltypes.c)
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between rbibutils versions 2.1 dated 2021-04-06 and 2.1.1 dated 2021-04-28
DESCRIPTION | 22 +++++++++++----------- MD5 | 10 +++++----- NEWS.md | 5 +++++ README.md | 16 +++++++++++++--- build/partial.rdb |binary tests/testthat.R | 10 ++++++---- 6 files changed, 40 insertions(+), 23 deletions(-)
Title: Classed Error and Warning Conditions
Description: This provides utilities for creating classed error and warning
conditions based on where the error originated.
Author: Andrew Redd [aut, cre],
R Documentation Task Force [aut]
Maintainer: Andrew Redd <Andrew.Redd@hsc.utah.edu>
Diff between pkgcond versions 0.1.0 dated 2018-12-03 and 0.1.1 dated 2021-04-28
DESCRIPTION | 12 - MD5 | 32 ++-- NAMESPACE | 44 ++--- NEWS.md | 5 R/conditions.R | 348 ++++++++++++++++++++++----------------------- R/suppress.R | 284 ++++++++++++++++++------------------ README.md | 4 man/assert_that.Rd | 65 ++++---- man/collapse.Rd | 38 ++-- man/comma_list.Rd | 59 +++---- man/condition.Rd | 104 +++++++------ man/dot-underscore.Rd | 60 +++---- man/find_scope.Rd | 62 ++++---- man/infix-concatenation.Rd | 66 ++++---- man/not-in.Rd | 48 +++--- man/skip_scope.Rd | 84 +++++----- man/suppress.Rd | 144 ++++++++---------- 17 files changed, 733 insertions(+), 726 deletions(-)
Title: Online Bayesian Methods for Change Point Analysis
Description: It implements the online Bayesian methods for change point analysis. It can
also perform missing data imputation with methods from 'VIM'. The reference
is Yigiter A, Chen J, An L, Danacioglu N (2015) <doi:10.1080/02664763.2014.1001330>.
Author: Hongyan Xu [cre, aut],
Ayten Yigiter [aut],
Jie Chen [aut]
Maintainer: Hongyan Xu <hxu@augusta.edu>
Diff between onlineBcp versions 0.1.0 dated 2021-01-11 and 0.1.1 dated 2021-04-28
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/online_cp.R | 38 +++++++++++++++++++++++++++++--------- man/summary.BayesCP.Rd | 4 +++- 4 files changed, 38 insertions(+), 16 deletions(-)
Title: Helper Functions for 'mlr3'
Description: Frequently used helper functions and assertions
used in 'mlr3' and its companion packages. Comes with helper functions
for functional programming, for printing, to work with 'data.table',
as well as some generally useful 'R6' classes. This package also
supersedes the package 'BBmisc'.
Author: Michel Lang [cre, aut] (<https://orcid.org/0000-0001-9754-0393>),
Patrick Schratz [aut] (<https://orcid.org/0000-0003-0748-6624>)
Maintainer: Michel Lang <michellang@gmail.com>
Diff between mlr3misc versions 0.9.0 dated 2021-04-12 and 0.9.1 dated 2021-04-28
DESCRIPTION | 6 +++--- MD5 | 7 ++++--- NEWS.md | 4 ++++ src/backports.h |only src/count_missing.c | 1 + 5 files changed, 12 insertions(+), 6 deletions(-)
Title: Disease-Drived Differential Proteins Co-Expression Network
Analysis
Description: Functions designed to connect disease-related differential proteins and
co-expression network. It provides the basic statics analysis included t test, ANOVA analysis.
The network construction is not offered by the package, you can used 'WGCNA' package which you
can learn in Peter et al. (2008) <doi:10.1186/1471-2105-9-559>. It also provides module analysis
included PCA analysis, two enrichment analysis, Planner maximally filtered graph extraction and
hub analysis.
Author: Kefu Liu [aut, cre]
Maintainer: Kefu Liu <liukefu19@163.com>
Diff between DDPNA versions 0.2.6 dated 2020-07-05 and 0.2.7 dated 2021-04-28
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- R/MaxquantDataconvert.R | 2 +- R/network.R | 2 +- man/ID_match.Rd | 2 +- man/MaxquantDataconvert.Rd | 2 +- 6 files changed, 14 insertions(+), 14 deletions(-)
Title: Bayesian Inference for Directed Acyclic Graphs
Description: Implementation of a collection of MCMC methods for Bayesian structure learning
of directed acyclic graphs (DAGs), both from continuous and discrete data. For efficient
inference on larger DAGs, the space of DAGs is pruned according to the data. To filter
the search space, the algorithm employs a hybrid approach, combining constraint-based
learning with search and score. A reduced search space is initially defined on the basis
of a skeleton obtained by means of the PC-algorithm, and then iteratively improved with
search and score. Search and score is then performed following two approaches:
Order MCMC, or Partition MCMC.
The BGe score is implemented for continuous data and the BDe score is implemented
for binary data or categorical data. The algorithms may provide the maximum a posteriori
(MAP) graph or a sample (a collection of DAGs) from the posterior distribution given the data.
All algorithms are also applicable for structure learning and sampling for dynamic Bayesian networks.
References:
J. Kuipers, P. Suter and G. Moffa (2018) <arXiv:1803.07859v2>,
N. Friedman and D. Koller (2003) <doi:10.1023/A:1020249912095>,
D. Geiger and D. Heckerman (2002) <doi:10.1214/aos/1035844981>,
J. Kuipers and G. Moffa (2017) <doi:10.1080/01621459.2015.1133426>,
M. Kalisch et al.(2012) <doi:10.18637/jss.v047.i11>.
Author: Polina Suter [aut, cre], Jack Kuipers [aut]
Maintainer: Polina Suter <polina.suter@bsse.ethz.ch>
Diff between BiDAG versions 2.0.0 dated 2021-02-15 and 2.0.1 dated 2021-04-28
BiDAG-2.0.0/BiDAG/R/KICH.R |only BiDAG-2.0.0/BiDAG/R/KIPAN.R |only BiDAG-2.0.0/BiDAG/data/KICH.rda |only BiDAG-2.0.0/BiDAG/data/KIPAN.rda |only BiDAG-2.0.0/BiDAG/data/KIRC.rda |only BiDAG-2.0.0/BiDAG/data/KIRP.rda |only BiDAG-2.0.0/BiDAG/data/intSTRING.rda |only BiDAG-2.0.0/BiDAG/data/mapSTRING.rda |only BiDAG-2.0.0/BiDAG/man/MCMCmult.Rd |only BiDAG-2.0.0/BiDAG/man/MCMCres.Rd |only BiDAG-2.0.0/BiDAG/man/MCMCscoretab.Rd |only BiDAG-2.0.0/BiDAG/man/intSTRING.Rd |only BiDAG-2.0.0/BiDAG/man/iterations.check.Rd |only BiDAG-2.0.0/BiDAG/man/kich.Rd |only BiDAG-2.0.0/BiDAG/man/kipan.Rd |only BiDAG-2.0.0/BiDAG/man/mapSTRING.Rd |only BiDAG-2.0.0/BiDAG/man/plot.MCMCmult.Rd |only BiDAG-2.0.0/BiDAG/man/plot.MCMCres.Rd |only BiDAG-2.0.0/BiDAG/man/print.MCMCmult.Rd |only BiDAG-2.0.0/BiDAG/man/print.MCMCres.Rd |only BiDAG-2.0.0/BiDAG/man/print.MCMCscoretab.Rd |only BiDAG-2.0.0/BiDAG/man/print.scoreparameters.Rd |only BiDAG-2.0.0/BiDAG/man/sample.check.Rd |only BiDAG-2.0.0/BiDAG/man/summary.MCMCmult.Rd |only BiDAG-2.0.0/BiDAG/man/summary.MCMCres.Rd |only BiDAG-2.0.0/BiDAG/man/summary.MCMCscoretab.Rd |only BiDAG-2.0.0/BiDAG/man/summary.scoreparameters.Rd |only BiDAG-2.0.1/BiDAG/DESCRIPTION | 8 BiDAG-2.0.1/BiDAG/MD5 | 124 ++++------ BiDAG-2.0.1/BiDAG/NAMESPACE | 42 +-- BiDAG-2.0.1/BiDAG/R/DBNdata.R | 4 BiDAG-2.0.1/BiDAG/R/KIRC.R | 6 BiDAG-2.0.1/BiDAG/R/KIRP.R | 4 BiDAG-2.0.1/BiDAG/R/corescore.R | 9 BiDAG-2.0.1/BiDAG/R/dataSTRING.R | 22 + BiDAG-2.0.1/BiDAG/R/graphhelpfns.R | 142 +++++++++--- BiDAG-2.0.1/BiDAG/R/initpar.R | 46 ++-- BiDAG-2.0.1/BiDAG/R/iterativeMCMC.R | 35 --- BiDAG-2.0.1/BiDAG/R/learningdata.R | 4 BiDAG-2.0.1/BiDAG/R/main.R | 75 +++--- BiDAG-2.0.1/BiDAG/R/orderMCMCmain.R | 13 - BiDAG-2.0.1/BiDAG/R/othercnstr.R |only BiDAG-2.0.1/BiDAG/R/partitionMCMC.R | 2 BiDAG-2.0.1/BiDAG/R/partitionMCMCmain.R | 12 - BiDAG-2.0.1/BiDAG/R/performanceassess.R | 173 ++++++--------- BiDAG-2.0.1/BiDAG/R/plotS3.R | 173 ++++++++++++--- BiDAG-2.0.1/BiDAG/R/plotfns.R | 36 +-- BiDAG-2.0.1/BiDAG/R/plotusingrgraphviz.R | 119 +++++++++- BiDAG-2.0.1/BiDAG/R/printmethods.R | 262 ++++++++++++++--------- BiDAG-2.0.1/BiDAG/R/summary.R | 190 ++++++++++++---- BiDAG-2.0.1/BiDAG/data/interactions.rda |only BiDAG-2.0.1/BiDAG/data/kirc.rda |only BiDAG-2.0.1/BiDAG/data/kirp.rda |only BiDAG-2.0.1/BiDAG/data/mapping.rda |only BiDAG-2.0.1/BiDAG/man/DBNdata.Rd | 8 BiDAG-2.0.1/BiDAG/man/DBNscore.Rd | 5 BiDAG-2.0.1/BiDAG/man/compareDAGs.Rd | 32 ++ BiDAG-2.0.1/BiDAG/man/compareDBNs.Rd | 14 - BiDAG-2.0.1/BiDAG/man/edgep.Rd | 7 BiDAG-2.0.1/BiDAG/man/gsim.Rd | 1 BiDAG-2.0.1/BiDAG/man/gsim100.Rd | 3 BiDAG-2.0.1/BiDAG/man/interactions.Rd |only BiDAG-2.0.1/BiDAG/man/iterativeMCMC.Rd | 49 +++- BiDAG-2.0.1/BiDAG/man/iterativeMCMCclass.Rd |only BiDAG-2.0.1/BiDAG/man/itercomp.Rd |only BiDAG-2.0.1/BiDAG/man/kirc.Rd | 8 BiDAG-2.0.1/BiDAG/man/kirp.Rd | 6 BiDAG-2.0.1/BiDAG/man/mapping.Rd |only BiDAG-2.0.1/BiDAG/man/modelp.Rd | 5 BiDAG-2.0.1/BiDAG/man/orderMCMC.Rd | 49 +++- BiDAG-2.0.1/BiDAG/man/orderMCMCclass.Rd |only BiDAG-2.0.1/BiDAG/man/partitionMCMC.Rd | 50 +++- BiDAG-2.0.1/BiDAG/man/partitionMCMCclass.Rd |only BiDAG-2.0.1/BiDAG/man/plot2in1.Rd |only BiDAG-2.0.1/BiDAG/man/plotDBN.Rd | 4 BiDAG-2.0.1/BiDAG/man/plotdiffs.DBN.Rd | 10 BiDAG-2.0.1/BiDAG/man/plotdiffs.Rd | 7 BiDAG-2.0.1/BiDAG/man/plotpcor.Rd | 23 -- BiDAG-2.0.1/BiDAG/man/plotpedges.Rd | 5 BiDAG-2.0.1/BiDAG/man/samplecomp.Rd |only BiDAG-2.0.1/BiDAG/man/scoreparameters.Rd | 31 +- BiDAG-2.0.1/BiDAG/man/scorespace.Rd |only BiDAG-2.0.1/BiDAG/man/scorespaceclass.Rd |only BiDAG-2.0.1/BiDAG/man/string2mat.Rd | 11 84 files changed, 1189 insertions(+), 640 deletions(-)
Title: Visualize Downloads from 'CRAN' Packages
Description: Visualize the trends and historical downloads from packages in the 'CRAN' repository. Data is obtained by using the 'API' to query the database from the 'RStudio' 'CRAN' mirror.
Author: Marcelo Ponce [aut, cre]
Maintainer: Marcelo Ponce <mponce@scinet.utoronto.ca>
Diff between Visualize.CRAN.Downloads versions 1.0 dated 2020-03-21 and 1.0.1 dated 2021-04-28
DESCRIPTION | 12 +- MD5 | 11 +- NAMESPACE | 2 NEWS |only README.md | 68 +++++++++++- build/vignette.rds |binary inst/doc/Visualize.CRAN.Downloads.html | 178 +++++++++++++++++++++++++++++---- 7 files changed, 230 insertions(+), 41 deletions(-)
More information about Visualize.CRAN.Downloads at CRAN
Permanent link
Title: Geographically Weighted Elliptical Regression
Description: Computes a elliptical regression model or a geographically weighted regression model with elliptical errors using Fisher's score algorithm. Provides diagnostic measures, residuals and analysis of variance. Cysneiros, F. J. A., Paula, G. A., and Galea, M. (2007) <doi:10.1016/j.spl.2007.01.012>.
Author: Yuri A. Araujo, Francisco Jose A. Cysneiros and Audrey H. M. A. Cysneiros
Maintainer: Yuri A. Araujo <yada1@de.ufpe.br>
Diff between gwer versions 2.1 dated 2020-11-24 and 3.0 dated 2021-04-28
gwer-2.1/gwer/R/envelope.R |only gwer-2.1/gwer/R/gwer.sel.R |only gwer-2.1/gwer/man/envelope.Rd |only gwer-2.1/gwer/man/gwer.sel.Rd |only gwer-3.0/gwer/DESCRIPTION | 17 - gwer-3.0/gwer/MD5 | 71 ++--- gwer-3.0/gwer/NAMESPACE | 90 +++--- gwer-3.0/gwer/R/anova.elliptical.R | 14 gwer-3.0/gwer/R/bw.gwer.R |only gwer-3.0/gwer/R/elliptical.R | 36 +- gwer-3.0/gwer/R/elliptical.diag.R | 50 +-- gwer-3.0/gwer/R/elliptical.diag.plots.R | 40 +- gwer-3.0/gwer/R/elliptical.envelope.R |only gwer-3.0/gwer/R/family.elliptical.R | 8 gwer-3.0/gwer/R/gwer.R | 339 +++++++++++------------- gwer-3.0/gwer/R/gwer.diag.R | 69 ++-- gwer-3.0/gwer/R/gwer.diag.plots.R | 78 ++--- gwer-3.0/gwer/R/gwer.envelope.R |only gwer-3.0/gwer/R/gwer.montecarlo.R |only gwer-3.0/gwer/R/gwer.multiscale.R |only gwer-3.0/gwer/R/gwer.multiscale.diag.R |only gwer-3.0/gwer/R/gwer.multiscale.diag.plots.R |only gwer-3.0/gwer/R/residuals.elliptical.R | 16 - gwer-3.0/gwer/R/residuals.gwer.R | 70 +++- gwer-3.0/gwer/R/summary.elliptical.R | 21 - gwer-3.0/gwer/R/summary.gwer.R | 93 +----- gwer-3.0/gwer/build |only gwer-3.0/gwer/man/anova.elliptical.Rd | 13 gwer-3.0/gwer/man/bw.gwer.Rd |only gwer-3.0/gwer/man/elliptical.Rd | 21 - gwer-3.0/gwer/man/elliptical.diag.Rd | 47 +-- gwer-3.0/gwer/man/elliptical.diag.plots.Rd | 29 -- gwer-3.0/gwer/man/elliptical.envelope.Rd |only gwer-3.0/gwer/man/family.elliptical.Rd | 6 gwer-3.0/gwer/man/gwer.Rd | 305 ++++++++++----------- gwer-3.0/gwer/man/gwer.diag.Rd | 66 +--- gwer-3.0/gwer/man/gwer.diag.plots.Rd | 60 +--- gwer-3.0/gwer/man/gwer.envelope.Rd |only gwer-3.0/gwer/man/gwer.montecarlo.Rd |only gwer-3.0/gwer/man/gwer.multiscale.Rd |only gwer-3.0/gwer/man/gwer.multiscale.diag.Rd |only gwer-3.0/gwer/man/gwer.multiscale.diag.plots.Rd |only gwer-3.0/gwer/man/residuals.elliptical.Rd | 14 gwer-3.0/gwer/man/residuals.gwer.Rd | 35 -- gwer-3.0/gwer/man/summary.elliptical.Rd | 12 gwer-3.0/gwer/man/summary.gwer.Rd | 37 -- 46 files changed, 776 insertions(+), 881 deletions(-)
Title: Binary Classification via GMDH-Type Neural Network Algorithms
Description: Performs binary classification via Group Method of Data Handling (GMDH) - type neural network algorithms. There exist two main algorithms available in GMDH() and dceGMDH() functions. GMDH() performs classification via GMDH algorithm for a binary response and returns important variables. dceGMDH() performs classification via diverse classifiers ensemble based on GMDH (dce-GMDH) algorithm. Also, the package produces a well-formatted table of descriptives for a binary response. Moreover, it produces confusion matrix, its related statistics and scatter plot (2D and 3D) with classification labels of binary classes to assess the prediction performance. All 'GMDH2' functions are designed for a binary response (Dag et al., 2019, <https://download.atlantis-press.com/article/125911202.pdf>).
Author: Osman Dag [aut, cre], Erdem Karabulut [aut], Reha Alpar [aut], Merve Kasikci [ctb]
Maintainer: Osman Dag <osman.dag@outlook.com>
Diff between GMDH2 versions 1.5 dated 2019-07-22 and 1.6 dated 2021-04-28
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- inst/citation | 15 +++++++++++++-- 3 files changed, 20 insertions(+), 9 deletions(-)