Title: Pedigree Inference from SNPs
Description: Multi-generational pedigree inference from incomplete data on
hundreds of SNPs, including parentage assignment and sibship clustering.
See Huisman (2017) (<DOI:10.1111/1755-0998.12665>) for more information.
Author: Jisca Huisman [aut, cre]
Maintainer: Jisca Huisman <jisca.huisman@gmail.com>
Diff between sequoia versions 2.3.2 dated 2021-04-29 and 2.3.3 dated 2021-05-02
DESCRIPTION | 8 +-- MD5 | 16 +++--- R/RelPlot.R | 8 +++ inst/doc/quick_start_example1.html | 85 ++++++++++++++++--------------------- inst/doc/vignette-age.pdf |binary inst/doc/vignette-main.pdf |binary man/PlotRelPairs.Rd | 8 +++ src/Sequoia.f90 | 16 +++--- vignettes/vignette-main.html | 18 +++---- 9 files changed, 83 insertions(+), 76 deletions(-)
Title: Empirical Dynamic Modeling ('EDM')
Description: An implementation of 'EDM' algorithms based on research software developed for internal use at the Sugihara Lab ('UCSD/SIO'). The package is implemented with 'Rcpp' wrappers around the 'cppEDM' library. It implements the 'simplex' projection method from Sugihara & May (1990) <doi:10.1038/344734a0>, the 'S-map' algorithm from Sugihara (1994) <doi:10.1098/rsta.1994.0106>, convergent cross mapping described in Sugihara et al. (2012) <doi:10.1126/science.1227079>, and, 'multiview embedding' described in Ye & Sugihara (2016) <doi:10.1126/science.aag0863>.
Author: Joseph Park [aut, cre] (<https://orcid.org/0000-0001-5411-1409>),
Cameron Smith [aut],
George Sugihara [aut, ccp] (<https://orcid.org/0000-0002-2863-6946>),
Ethan Deyle [aut] (<https://orcid.org/0000-0001-8704-8434>),
Erik Saberski [ctb] (<https://orcid.org/0000-0002-6475-6187>),
Hao Ye [ctb] (<https://orcid.org/0000-0002-8630-1458>),
The Regents of the University of California [cph]
Maintainer: Joseph Park <JosephPark@IEEE.org>
Diff between rEDM versions 1.8.1 dated 2021-03-22 and 1.8.2 dated 2021-05-02
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- build/vignette.rds |binary src/cppEDM/src/API.cc | 9 +++++---- src/cppEDM/src/CCM.cc | 23 ++++++++++++----------- src/cppEDM/src/EDM.h | 1 - src/cppEDM/src/Parameter.cc | 27 +++++++++++++-------------- vignettes/rEDM-tutorial.html | 18 +++++++++--------- 8 files changed, 50 insertions(+), 50 deletions(-)
Title: Psychometric Meta-Analysis Toolkit
Description: Tools for computing bare-bones and psychometric meta-analyses and for generating psychometric data for use in meta-analysis simulations. Supports bare-bones, individual-correction, and artifact-distribution methods for meta-analyzing correlations and d values. Includes tools for converting effect sizes, computing sporadic artifact corrections, reshaping meta-analytic databases, computing multivariate corrections for range variation, and more. Bugs can be reported to <https://github.com/psychmeta/psychmeta/issues> or <issues@psychmeta.com>.
Author: Jeffrey A. Dahlke [aut, cre],
Brenton M. Wiernik [aut],
Wesley Gardiner [ctb] (Unit tests),
Michael T. Brannick [ctb] (Testing),
Jack Kostal [ctb] (Code for reshape_mat2dat function),
Sean Potter [ctb] (Testing; Code for cumulative and leave1out plots),
John Sakaluk [ctb] (Code for funnel and forest plots),
Yuejia (Mandy) Teng [ctb] (Testing)
Maintainer: Jeffrey A. Dahlke <jdahlke@humrro.org>
Diff between psychmeta versions 2.4.2 dated 2020-09-09 and 2.5.0 dated 2021-05-02
DESCRIPTION | 12 MD5 | 197 ++++----- NAMESPACE | 3 NEWS | 9 R/adjust_n.R | 4 R/composites.R | 10 R/compute_dmod.R | 12 R/convert_es.R | 6 R/correct_d.R | 15 R/correct_r.R | 25 - R/correct_r_internal.R | 5 R/data_doc.R | 10 R/estimate_artifacts.R | 8 R/estimate_prods.R | 4 R/estimate_var_rho_int.R | 2 R/estimate_var_rho_tsa.R | 9 R/estimate_var_tsa.R | 9 R/heterogeneity.R | 12 R/lm_mat.R | 10 R/ma_d.R | 8 R/ma_r.R | 643 +++++++++++++++++++------------ R/ma_r_ad_rb_adj.R | 10 R/ma_r_ad_rb_orig.R | 6 R/ma_r_ad_uvdrr.R | 4 R/ma_r_ad_uvirr.R | 8 R/ma_r_bb.R | 28 - R/ma_r_ic.R | 2 R/methods_predict.R | 33 - R/methods_reattribute.R | 41 - R/output.R | 2 R/plotting.R | 53 +- R/remove_dependency.R | 4 R/reshape.R | 2 R/simulate_r.R | 4 R/var_error.R | 79 ++- R/var_error_tsa.R | 5 README.md | 2 build/partial.rdb |only inst/doc/ma_r.html | 10 inst/doc/overview.html | 6 man/adjust_n_d.Rd | 2 man/adjust_n_r.Rd | 2 man/composite_r_scalar.Rd | 2 man/composite_rel_matrix.Rd | 4 man/composite_rel_scalar.Rd | 4 man/compute_dmod.Rd | 4 man/compute_dmod_par.Rd | 4 man/convert_es.Rd | 6 man/correct_d.Rd | 13 man/correct_d_bias.Rd | 2 man/correct_glass_bias.Rd | 4 man/correct_r.Rd | 13 man/correct_r_bias.Rd | 2 man/correct_r_coarseness.Rd | 6 man/correct_r_dich.Rd | 2 man/correct_r_split.Rd | 2 man/data_r_gonzalezmule_2014.Rd | 2 man/data_r_mcdaniel_1994.Rd | 2 man/data_r_mcleod_2007.Rd | 2 man/data_r_oh_2009.Rd | 2 man/data_r_roth_2015.Rd | 2 man/dot-estimate_attenuation.Rd | 2 man/dot-integrate_dmod.Rd | 4 man/dot-lambda_bvirr.Rd | 5 man/estimate_artifacts.Rd | 8 man/estimate_prod.Rd | 4 man/estimate_var_rho_int.Rd | 2 man/estimate_var_rho_tsa.Rd | 9 man/estimate_var_tsa.Rd | 9 man/heterogeneity.Rd | 12 man/ma_d.Rd | 7 man/ma_r.Rd | 11 man/ma_r_ad.int_rbAdj.Rd | 6 man/ma_r_ad.int_rbOrig.Rd | 2 man/ma_r_ad.int_uvdrr.Rd | 4 man/ma_r_ad.int_uvirr.Rd | 6 man/ma_r_ad.tsa_rb1Adj.Rd | 2 man/ma_r_ad.tsa_rb1Orig.Rd | 2 man/ma_r_ad.tsa_rb2Adj.Rd | 2 man/ma_r_ad.tsa_rb2Orig.Rd | 2 man/ma_r_ad.tsa_uvirr.Rd | 2 man/metabulate_rmd_helper.Rd | 2 man/print.Rd | 6 man/reshape_wide2long.Rd | 2 man/simulate_r_database.Rd | 2 man/simulate_r_sample.Rd | 2 man/var_error_A.Rd | 2 man/var_error_alpha.Rd | 2 man/var_error_d.Rd | 2 man/var_error_mult_R.Rd | 4 man/var_error_q.Rd | 7 man/var_error_r.Rd | 6 man/var_error_r_bvirr.Rd | 5 man/var_error_rel.Rd | 7 man/var_error_spearman.Rd |only man/var_error_u.Rd | 5 tests/testthat/data_ma_r.rda |only tests/testthat/test-adjust_n.R | 2 tests/testthat/test-collapse_data_list.R |only tests/testthat/test-convert_es.R | 2 tests/testthat/test-distribute_logic.R |only tests/testthat/test-ma_r.R |only tests/testthat/test-scalar_arg_warning.R |only 103 files changed, 877 insertions(+), 676 deletions(-)
Title: Create Constraints for Small Test Assembly Problems
Description: Provides simple functions to create constraints for small test assembly problems
(e.g. van der Linden (2005, ISBN: 978-0-387-29054-6)) using sparse matrices. Currently,
'GLPK', 'lpSolve', 'Symphony', and 'Gurobi' are supported as solvers. The 'gurobi' package is not available from
any mainstream repository; see <https://www.gurobi.com/downloads/>.
Author: Benjamin Becker [aut, cre],
Dries Debeer [aut]
Maintainer: Benjamin Becker <b.becker@iqb.hu-berlin.de>
Diff between eatATA versions 0.11.1 dated 2021-04-16 and 0.11.2 dated 2021-05-02
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 4 ++++ inst/doc/minimal_example.html | 4 ++-- inst/doc/overview.html | 4 ++-- inst/doc/use_case_pilot_study.html | 4 ++-- tests/testthat/test_useSolver.R | 19 +++++++++++-------- 7 files changed, 30 insertions(+), 23 deletions(-)
Title: Computation of Satellite Position
Description: Provides basic functionalities to calculate the position of
satellites given a known state vector. The package includes implementations
of the SGP4 and SDP4 simplified perturbation models to propagate orbital
state vectors, as well as utilities to read TLE files and convert coordinates
between different frames of reference. Several of the functionalities of the
package (including the high-precision numerical orbit propagator) require
the coefficients and data included in the 'asteRiskData' package, available
in a 'drat' repository. To install this data package, run
'install.packages("asteRiskData", repos="https://rafael-ayala.github.io/drat/")'.
Felix R. Hoots, Ronald L. Roehrich and T.S. Kelso (1988) <https://celestrak.com/NORAD/documentation/spacetrk.pdf>.
David Vallado, Paul Crawford, Richard Hujsak and T.S. Kelso (2012) <doi:10.2514/6.2006-6753>.
Felix R. Hoots, Paul W. Schumacher Jr. and Robert A. Glover (2014) <doi:10.2514/1.9161>.
Author: Rafael Ayala [aut, cre] (<https://orcid.org/0000-0002-9332-4623>),
Daniel Ayala [aut] (<https://orcid.org/0000-0003-2095-1009>),
Lara Selles Vidal [aut] (<https://orcid.org/0000-0003-2537-6824>)
Maintainer: Rafael Ayala <rafael.ayala@oist.jp>
Diff between asteRisk versions 0.99.4 dated 2021-04-19 and 1.0.0 dated 2021-05-02
DESCRIPTION | 19 +- MD5 | 46 ++++-- NAMESPACE | 11 + NEWS | 5 R/SOFAfunctions.R |only R/auxiliaryFunctions.R | 17 ++ R/constants.R | 3 R/coordinatesTransformations.R | 281 ++++++++++++++++++++++++++++++++++++----- R/hpop.R |only R/hpopConstants.R |only R/hpop_acceleration.R |only R/hpop_auxiliaryFunctions.R |only R/nrlmsise00_model.R |only R/radau_tests.R |only R/zzz.R |only build/vignette.rds |binary inst/doc/asteRisk.R | 81 +++++++++++ inst/doc/asteRisk.Rmd | 107 +++++++++++++++ inst/doc/asteRisk.html | 102 +++++++++++++- inst/unitTests/test_all.R | 15 -- man/ECEFtoGCRF.Rd |only man/ECEFtoLATLON.Rd | 8 - man/ECItoKOE.Rd |only man/GCRFtoECEF.Rd |only man/GCRFtoLATLON.Rd |only man/KOEtoECI.Rd |only man/TEMEtoECEF.Rd | 12 + man/TEMEtoGCRF.Rd |only man/TEMEtoLATLON.Rd | 30 ++-- man/getLatestSpaceData.Rd |only man/hpop.Rd |only vignettes/asteRisk.Rmd | 107 +++++++++++++++ 32 files changed, 735 insertions(+), 109 deletions(-)
Title: A 'pkgdown' Template
Description: This is an accessible template for 'pkgdown'. It uses two
bootstrap themes, Flatly and Darkly and utilizes the
'prefers-color-scheme' CSS variable to automatically serve either of
the two based on user’s operating system setting, or allowing them to
manually toggle between them.
Author: Amir Masoud Abdol [aut, cre]
Maintainer: Amir Masoud Abdol <i@amirmasoudabdol.name>
Diff between preferably versions 0.3.0 dated 2021-04-22 and 0.3.1 dated 2021-05-02
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 6 ++++++ README.md | 6 +++--- inst/doc/in-the-wild.Rmd | 5 +++++ inst/doc/in-the-wild.html | 5 +++++ inst/pkgdown/assets/preferably.css | 9 +++++++++ vignettes/in-the-wild.Rmd | 5 +++++ 8 files changed, 43 insertions(+), 13 deletions(-)
Title: Ornstein-Uhlenbeck Models for Phylogenetic Comparative
Hypotheses
Description: Fit and compare Ornstein-Uhlenbeck models for evolution along a phylogenetic tree.
Author: Aaron A. King [aut, cre],
Marguerite A. Butler [ctb]
Maintainer: Aaron A. King <kingaa@umich.edu>
Diff between ouch versions 2.15-1 dated 2021-02-21 and 2.16 dated 2021-05-02
ouch-2.15-1/ouch/R/loglik.R |only ouch-2.15-1/ouch/man/loglik.Rd |only ouch-2.15-1/ouch/tests |only ouch-2.16/ouch/DESCRIPTION | 18 +- ouch-2.16/ouch/MD5 | 74 +++++------ ouch-2.16/ouch/NAMESPACE | 2 ouch-2.16/ouch/R/anolis.R | 1 ouch-2.16/ouch/R/ape2ouch.R | 4 ouch-2.16/ouch/R/bimac.R | 2 ouch-2.16/ouch/R/bootstrap.R | 35 ----- ouch-2.16/ouch/R/brown.R | 112 +++++++++------- ouch-2.16/ouch/R/coef.R | 2 ouch-2.16/ouch/R/glssoln.R | 26 ++- ouch-2.16/ouch/R/hansen.R | 190 ++++++++++++++++------------ ouch-2.16/ouch/R/logLik.R |only ouch-2.16/ouch/R/ouchtree.R | 55 ++------ ouch-2.16/ouch/R/package.R | 23 +++ ouch-2.16/ouch/R/paint.R | 12 - ouch-2.16/ouch/R/plot.R | 262 ++++++++++++++++++++++++--------------- ouch-2.16/ouch/R/print.R | 2 ouch-2.16/ouch/R/rmvnorm.R | 4 ouch-2.16/ouch/R/simulate.R | 2 ouch-2.16/ouch/R/summary.R | 2 ouch-2.16/ouch/R/update.R | 2 ouch-2.16/ouch/inst/NEWS | 12 + ouch-2.16/ouch/inst/NEWS.Rd | 8 + ouch-2.16/ouch/man/anolis_ssd.Rd | 5 ouch-2.16/ouch/man/bimac.Rd | 5 ouch-2.16/ouch/man/bootstrap.Rd | 30 +++- ouch-2.16/ouch/man/coef.Rd | 18 ++ ouch-2.16/ouch/man/hansen.Rd | 4 ouch-2.16/ouch/man/logLik.Rd |only ouch-2.16/ouch/man/package.Rd | 1 ouch-2.16/ouch/man/plot.Rd | 59 +++++++- ouch-2.16/ouch/man/print.Rd | 23 ++- ouch-2.16/ouch/man/simulate.Rd | 20 ++ ouch-2.16/ouch/man/summary.Rd | 18 ++ ouch-2.16/ouch/man/update.Rd | 22 ++- 38 files changed, 652 insertions(+), 403 deletions(-)
Title: Fit, Predict and Plot 2D Gaussians
Description: Functions to fit two-dimensional Gaussian functions, predict values from
fits, and produce plots of predicted data via either 'ggplot2' or base R
plotting.
Author: Vikram B. Baliga [aut, cre, cph]
(<https://orcid.org/0000-0002-9367-8974>)
Maintainer: Vikram B. Baliga <vbaliga87@gmail.com>
Diff between gaussplotR versions 0.2.3 dated 2021-01-10 and 0.2.5 dated 2021-05-02
DESCRIPTION | 8 MD5 | 71 +- NAMESPACE | 2 NEWS.md | 15 R/autofit_gaussian_2D.R | 2 R/characterize_gaussian_fits.R | 746 ++++++++++++------------- R/compare_gaussian_fits.R | 2 R/fit_gaussian_2D.R | 26 R/gaussplot_sample_data.R | 8 R/get_volume_gaussian_2D.R | 4 R/ggplot_gaussian_2D.R | 4 R/predict_gaussian_2D.R | 4 R/print_summary_methods.R |only R/rgl_gaussian_2D.R | 2 README.md | 63 -- build/vignette.rds |binary inst/CITATION |only inst/doc/fit_gaussian_2D.Rmd | 563 +++++++++--------- inst/doc/fit_gaussian_2D.html | 661 +++++++--------------- inst/doc/formulas-used-by-fit-gaussian-2D.Rmd | 4 inst/doc/formulas-used-by-fit-gaussian-2D.html | 199 ------ inst/doc/troubleshooting-model-fits.Rmd | 374 ++++++------ inst/doc/troubleshooting-model-fits.html | 430 +++----------- man/autofit_gaussian_2D.Rd | 4 man/characterize_gaussian_fits.Rd | 2 man/compare_gaussian_fits.Rd | 4 man/figures/README-example-1.png |binary man/figures/README-example-3.png |binary man/fit_gaussian_2D.Rd | 16 man/gaussplot_sample_data.Rd | 8 man/get_volume_gaussian_2D.Rd | 6 man/ggplot_gaussian_2D.Rd | 6 man/predict_gaussian_2D.Rd | 10 man/rgl_gaussian_2D.Rd | 4 vignettes/fit_gaussian_2D.Rmd | 563 +++++++++--------- vignettes/formulas-used-by-fit-gaussian-2D.Rmd | 4 vignettes/pandocc2c439115b6.html |only vignettes/troubleshooting-model-fits.Rmd | 374 ++++++------ 38 files changed, 1808 insertions(+), 2381 deletions(-)
Title: Interface to Download Meteorological (and Hydrological) Datasets
Description: Automatize downloading of meteorological and hydrological data from publicly available repositories:
OGIMET (<http://ogimet.com/index.phtml.en>),
University of Wyoming - atmospheric vertical profiling data (<http://weather.uwyo.edu/upperair/>),
Polish Institute of Meterology and Water Management - National Research Institute (<https://danepubliczne.imgw.pl>),
and National Oceanic & Atmospheric Administration (NOAA).
This package also allows for adding geographical coordinates for each observation.
Author: Bartosz Czernecki [aut, cre] (<https://orcid.org/0000-0001-6496-1386>),
Arkadiusz Głogowski [aut] (<https://orcid.org/0000-0002-7587-8892>),
Jakub Nowosad [aut] (<https://orcid.org/0000-0002-1057-3721>),
IMGW-PIB [ctb] (source of the data)
Maintainer: Bartosz Czernecki <nwp@amu.edu.pl>
Diff between climate versions 1.0.0 dated 2021-04-18 and 1.0.1 dated 2021-05-02
DESCRIPTION | 8 - MD5 | 104 ++++++++--------- NAMESPACE | 1 NEWS.md | 4 R/check_locale.R | 19 ++- R/clean_metadata_hydro.R | 47 ++------ R/clean_metadata_meteo.R | 48 +++----- R/get_coord_from_string.R | 22 +-- R/hydro_imgw.R | 10 - R/hydro_imgw_annual.R | 15 +- R/hydro_imgw_daily.R | 19 ++- R/hydro_imgw_monthly.R | 65 ++++++----- R/hydro_metadata_imgw.R | 24 ++-- R/hydro_shortening_imgw.R | 20 +-- R/meteo_imgw.R | 10 - R/meteo_imgw_daily.R | 170 ++++++++++++++++------------- R/meteo_imgw_hourly.R | 114 +++++++++++-------- R/meteo_imgw_monthly.R | 116 ++++++++++---------- R/meteo_metadata_imgw.R | 36 +++--- R/meteo_noaa_co2.R | 4 R/meteo_noaa_hourly.R | 10 - R/meteo_ogimet.R | 6 - R/meteo_shortening_imgw.R | 20 +-- R/nearest_stations_imgw.R | 8 - R/nearest_stations_noaa.R | 10 - R/nearest_stations_ogimet.R | 98 ++++++++-------- R/ogimet_daily.R | 86 +++++++------- R/ogimet_hourly.R | 80 ++++++------- R/onAttach.R | 2 R/precip_split.R | 10 - R/sounding_wyoming.R | 28 ++-- R/stations_ogimet.R | 80 ++++++------- R/test_url.R | 10 - inst/doc/getstarted.R | 8 - inst/doc/getstarted.Rmd | 8 - inst/doc/getstarted.html | 226 +++++++++++++++++++-------------------- man/get_coord_from_string.Rd | 2 man/hydro_imgw.Rd | 2 man/hydro_imgw_monthly.Rd | 2 man/hydro_metadata_imgw.Rd | 6 - man/hydro_shortening_imgw.Rd | 4 man/meteo_imgw.Rd | 2 man/meteo_imgw_daily.Rd | 2 man/meteo_imgw_hourly.Rd | 2 man/meteo_imgw_monthly.Rd | 4 man/meteo_metadata_imgw.Rd | 6 - man/meteo_noaa_co2.Rd | 2 man/meteo_shortening_imgw.Rd | 4 man/ogimet_daily.Rd | 2 man/ogimet_hourly.Rd | 2 man/precip_split.Rd | 2 tests/testthat/test-hydro_imgw.R | 2 vignettes/getstarted.Rmd | 8 - 53 files changed, 829 insertions(+), 771 deletions(-)
Title: Bioacoustic Analysis and Publication Tools
Description: Provides basic tools for manipulating sound files for bioacoustic analysis, and preparing analyses these for publication. The package validates that values are physically possible wherever feasible.
Author: Baker Ed [aut, cre],
Geissman Quentin [ctb]
Maintainer: Baker Ed <ed@ebaker.me.uk>
Diff between sonicscrewdriver versions 0.0.3 dated 2020-11-15 and 0.0.4 dated 2021-05-02
sonicscrewdriver-0.0.3/sonicscrewdriver/R/rainfall_hardRain.R |only sonicscrewdriver-0.0.4/sonicscrewdriver/DESCRIPTION | 14 sonicscrewdriver-0.0.4/sonicscrewdriver/MD5 | 275 +++--- sonicscrewdriver-0.0.4/sonicscrewdriver/NAMESPACE | 190 ++-- sonicscrewdriver-0.0.4/sonicscrewdriver/NEWS.md | 14 sonicscrewdriver-0.0.4/sonicscrewdriver/R/STP.R | 8 sonicscrewdriver-0.0.4/sonicscrewdriver/R/abAnnotations.R | 52 - sonicscrewdriver-0.0.4/sonicscrewdriver/R/ab_seqss.R |only sonicscrewdriver-0.0.4/sonicscrewdriver/R/audio_filesize.R | 46 - sonicscrewdriver-0.0.4/sonicscrewdriver/R/audiomoth.R |only sonicscrewdriver-0.0.4/sonicscrewdriver/R/autoBandPass.R | 90 +- sonicscrewdriver-0.0.4/sonicscrewdriver/R/beatComplexity.R | 78 - sonicscrewdriver-0.0.4/sonicscrewdriver/R/beatSpectrum.R | 102 +- sonicscrewdriver-0.0.4/sonicscrewdriver/R/convertFileSizes.R | 92 +- sonicscrewdriver-0.0.4/sonicscrewdriver/R/convertPressures.R | 102 +- sonicscrewdriver-0.0.4/sonicscrewdriver/R/convertTemperatures.R | 150 +-- sonicscrewdriver-0.0.4/sonicscrewdriver/R/convertTime.R | 51 - sonicscrewdriver-0.0.4/sonicscrewdriver/R/cutws.R | 69 - sonicscrewdriver-0.0.4/sonicscrewdriver/R/data2Wave.R | 60 - sonicscrewdriver-0.0.4/sonicscrewdriver/R/dayPhase.R |only sonicscrewdriver-0.0.4/sonicscrewdriver/R/defaultCluster.R | 52 - sonicscrewdriver-0.0.4/sonicscrewdriver/R/dutyCycle.R | 68 - sonicscrewdriver-0.0.4/sonicscrewdriver/R/echolocation.R | 78 - sonicscrewdriver-0.0.4/sonicscrewdriver/R/entropyStats.R | 72 - sonicscrewdriver-0.0.4/sonicscrewdriver/R/exponential_backoff.R | 26 sonicscrewdriver-0.0.4/sonicscrewdriver/R/frequency.R | 122 +- sonicscrewdriver-0.0.4/sonicscrewdriver/R/frequencyStats.R | 236 ++--- sonicscrewdriver-0.0.4/sonicscrewdriver/R/generateNoise.R | 192 ++-- sonicscrewdriver-0.0.4/sonicscrewdriver/R/googleSpeech.R | 116 +- sonicscrewdriver-0.0.4/sonicscrewdriver/R/hearingThresholds.R |only sonicscrewdriver-0.0.4/sonicscrewdriver/R/indexSpec.R | 104 +- sonicscrewdriver-0.0.4/sonicscrewdriver/R/jitter.R | 90 +- sonicscrewdriver-0.0.4/sonicscrewdriver/R/labels.R | 144 +-- sonicscrewdriver-0.0.4/sonicscrewdriver/R/ntd.R | 64 - sonicscrewdriver-0.0.4/sonicscrewdriver/R/organism.R | 18 sonicscrewdriver-0.0.4/sonicscrewdriver/R/packageManagement.R | 45 - sonicscrewdriver-0.0.4/sonicscrewdriver/R/parseFilename.R | 170 ++- sonicscrewdriver-0.0.4/sonicscrewdriver/R/pulseDetection.R | 48 - sonicscrewdriver-0.0.4/sonicscrewdriver/R/pulseDetection_dietrich.R | 192 ++-- sonicscrewdriver-0.0.4/sonicscrewdriver/R/pulseDetection_simple.R | 74 - sonicscrewdriver-0.0.4/sonicscrewdriver/R/pulseDetection_threshold.R | 88 +- sonicscrewdriver-0.0.4/sonicscrewdriver/R/pulseIntervals.R | 70 - sonicscrewdriver-0.0.4/sonicscrewdriver/R/pulseStats.R | 20 sonicscrewdriver-0.0.4/sonicscrewdriver/R/rainfallDetection.R | 55 - sonicscrewdriver-0.0.4/sonicscrewdriver/R/rainfall_bedoya2017.R | 30 sonicscrewdriver-0.0.4/sonicscrewdriver/R/readAudio.R |only sonicscrewdriver-0.0.4/sonicscrewdriver/R/referenceLevels.R | 64 - sonicscrewdriver-0.0.4/sonicscrewdriver/R/sDuration.R | 122 +- sonicscrewdriver-0.0.4/sonicscrewdriver/R/sheepFrequencyStats.R | 8 sonicscrewdriver-0.0.4/sonicscrewdriver/R/shimmer.R | 81 - 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sonicscrewdriver-0.0.4/sonicscrewdriver/tests/testthat/test-referenceLevels.R | 16 sonicscrewdriver-0.0.4/sonicscrewdriver/tests/testthat/test-sDuration.R | 28 sonicscrewdriver-0.0.4/sonicscrewdriver/tests/testthat/test-soundSpeed.R | 18 sonicscrewdriver-0.0.4/sonicscrewdriver/tests/testthat/test-tempconvert.R | 70 - sonicscrewdriver-0.0.4/sonicscrewdriver/tests/testthat/test-validationFunctions.R | 197 ++-- sonicscrewdriver-0.0.4/sonicscrewdriver/tests/testthat/test-wavelength.R | 34 sonicscrewdriver-0.0.4/sonicscrewdriver/vignettes |only 149 files changed, 4416 insertions(+), 4289 deletions(-)
More information about sonicscrewdriver at CRAN
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Title: N-Factor Commodity Pricing Through Term Structure Estimation
Description: Commodity pricing models are (systems of) stochastic differential equations that are utilized for the valuation and hedging of commodity contingent claims (i.e. derivative products on the commodity) and other commodity related investments. Commodity pricing models that capture market dynamics are of great importance to commodity market participants in order to exercise sound investment and risk-management strategies. Parameters of commodity pricing models are estimated through maximum likelihood estimation, using available term structure futures data of a commodity. 'NFCP' (n-factor commodity pricing) provides a framework for the modeling, parameter estimation, probabilistic forecasting, option valuation and simulation of commodity prices through state space and Monte Carlo methods, risk-neutral valuation and Kalman filtering. 'NFCP' allows the commodity pricing model to consist of n correlated factors, with both random walk and mean-reverting elements. The n-factor commodity pricing model framework was first presented in the work of Cortazar and Naranjo (2006) <doi:10.1002/fut.20198>. Examples presented in 'NFCP' replicate the two-factor crude oil commodity pricing model presented in the prolific work of Schwartz and Smith (2000) <doi:10.1287/mnsc.46.7.893.12034> with the approximate term structure futures data applied within this study provided in the 'NFCP' package.
Author: Thomas Aspinall [aut, cre] (<https://orcid.org/0000-0002-6968-1989>),
Adrian Gepp [aut] (<https://orcid.org/0000-0003-1666-5501>),
Geoff Harris [aut] (<https://orcid.org/0000-0003-4284-8619>),
Simone Kelly [aut] (<https://orcid.org/0000-0002-6528-8557>),
Colette Southam [aut] (<https://orcid.org/0000-0001-7263-2347>),
Bruce Vanstone [aut] (<https://orcid.org/0000-0002-3977-2468>)
Maintainer: Thomas Aspinall <tomaspinall2512@gmail.com>
Diff between NFCP versions 0.2.0 dated 2021-02-25 and 1.0.0 dated 2021-05-02
NFCP-0.2.0/NFCP/R/American-Options.R |only NFCP-0.2.0/NFCP/R/Analysis.R |only NFCP-0.2.0/NFCP/R/Data-Descriptions.R |only NFCP-0.2.0/NFCP/R/Dependencies.R |only NFCP-0.2.0/NFCP/R/Kalman-Filter.R |only NFCP-0.2.0/NFCP/R/Simulations.R |only NFCP-0.2.0/NFCP/R/TS-PE.R |only NFCP-1.0.0/NFCP/DESCRIPTION | 6 NFCP-1.0.0/NFCP/MD5 | 79 +- NFCP-1.0.0/NFCP/NAMESPACE | 12 NFCP-1.0.0/NFCP/NEWS.md | 16 NFCP-1.0.0/NFCP/R/Kalman_filter.R |only NFCP-1.0.0/NFCP/R/NFCPdescription.R | 25 NFCP-1.0.0/NFCP/R/analysis.R |only NFCP-1.0.0/NFCP/R/data_description.R |only NFCP-1.0.0/NFCP/R/dependencies.R |only NFCP-1.0.0/NFCP/R/deprecated_functions.R |only NFCP-1.0.0/NFCP/R/option_valuation.R |only NFCP-1.0.0/NFCP/R/parameter_estimation.R |only NFCP-1.0.0/NFCP/R/simulations.R |only NFCP-1.0.0/NFCP/build/NFCP.pdf |binary NFCP-1.0.0/NFCP/data/SS.Oil.rda |binary NFCP-1.0.0/NFCP/data/SS_oil.rda |only NFCP-1.0.0/NFCP/inst/doc/NFCP.R | 312 ++++---- NFCP-1.0.0/NFCP/inst/doc/NFCP.Rmd | 450 ++++++------ NFCP-1.0.0/NFCP/inst/doc/NFCP.html | 953 ++++++++++++-------------- NFCP-1.0.0/NFCP/man/A_T.Rd | 75 +- NFCP-1.0.0/NFCP/man/American.Option.Value.Rd | 187 +---- NFCP-1.0.0/NFCP/man/American_option_value.Rd |only NFCP-1.0.0/NFCP/man/European.Option.Value.Rd | 177 +--- NFCP-1.0.0/NFCP/man/European_option_value.Rd |only NFCP-1.0.0/NFCP/man/Futures.Price.Forecast.Rd | 94 -- NFCP-1.0.0/NFCP/man/Futures.Price.Simulate.Rd | 105 -- NFCP-1.0.0/NFCP/man/NFCP.Domains.Rd | 56 - NFCP-1.0.0/NFCP/man/NFCP.Kalman.filter.Rd | 353 +-------- NFCP-1.0.0/NFCP/man/NFCP.MLE.Rd | 268 +------ NFCP-1.0.0/NFCP/man/NFCP.Parameters.Rd | 154 ---- NFCP-1.0.0/NFCP/man/NFCP_Kalman_filter.Rd |only NFCP-1.0.0/NFCP/man/NFCP_MLE.Rd |only NFCP-1.0.0/NFCP/man/NFCP_domains.Rd |only NFCP-1.0.0/NFCP/man/NFCP_parameters.Rd |only NFCP-1.0.0/NFCP/man/SS.Oil.Rd | 102 +- NFCP-1.0.0/NFCP/man/SS_oil.Rd |only NFCP-1.0.0/NFCP/man/Spot.Price.Forecast.Rd | 98 -- NFCP-1.0.0/NFCP/man/Spot.Price.Simulate.Rd | 157 +--- NFCP-1.0.0/NFCP/man/Stitch.Contracts.Rd | 119 --- NFCP-1.0.0/NFCP/man/TSFit.Volatility.Rd | 85 -- NFCP-1.0.0/NFCP/man/TSfit_volatility.Rd |only NFCP-1.0.0/NFCP/man/cov_func.Rd | 74 +- NFCP-1.0.0/NFCP/man/futures_price_forecast.Rd |only NFCP-1.0.0/NFCP/man/futures_price_simulate.Rd |only NFCP-1.0.0/NFCP/man/spot_price_forecast.Rd |only NFCP-1.0.0/NFCP/man/spot_price_simulate.Rd |only NFCP-1.0.0/NFCP/man/stitch_contracts.Rd |only NFCP-1.0.0/NFCP/vignettes/NFCP.Rmd | 450 ++++++------ 55 files changed, 1736 insertions(+), 2671 deletions(-)
Title: Advanced Graphics and Image-Processing in R
Description: Bindings to 'ImageMagick': the most comprehensive open-source image
processing library available. Supports many common formats (png, jpeg, tiff,
pdf, etc) and manipulations (rotate, scale, crop, trim, flip, blur, etc).
All operations are vectorized via the Magick++ STL meaning they operate either
on a single frame or a series of frames for working with layers, collages,
or animation. In RStudio images are automatically previewed when printed to
the console, resulting in an interactive editing environment. The latest
version of the package includes a native graphics device for creating
in-memory graphics or drawing onto images using pixel coordinates.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between magick versions 2.7.1 dated 2021-03-20 and 2.7.2 dated 2021-05-02
DESCRIPTION | 6 +- MD5 | 35 ++++++------ NAMESPACE | 1 NEWS | 6 ++ R/RcppExports.R | 4 + R/animation.R | 6 +- R/edit.R | 6 +- R/fx.R | 2 R/utils.R | 4 - build/vignette.rds |binary inst/doc/intro.html | 144 +++++++++++++++++++++------------------------------- man/animation.Rd | 2 man/editing.Rd | 11 +++ man/fx.Rd | 2 src/Makevars.ucrt |only src/Makevars.win | 2 src/RcppExports.cpp | 12 ++++ src/animation.cpp | 9 +++ src/color.cpp | 4 + 19 files changed, 146 insertions(+), 110 deletions(-)
Title: Trellis Graphics for R
Description: A powerful and elegant high-level data visualization
system inspired by Trellis graphics, with an emphasis on
multivariate data. Lattice is sufficient for typical graphics needs,
and is also flexible enough to handle most nonstandard requirements.
See ?Lattice for an introduction.
Author: Deepayan Sarkar [aut, cre] (<https://orcid.org/0000-0003-4107-1553>),
Felix Andrews [ctb],
Kevin Wright [ctb] (documentation),
Neil Klepeis [ctb],
Johan Larsson [ctb] (colorkey title),
Paul Murrell [ctb]
Maintainer: Deepayan Sarkar <deepayan.sarkar@r-project.org>
Diff between lattice versions 0.20-41 dated 2020-04-02 and 0.20-44 dated 2021-05-02
lattice-0.20-41/lattice/data/barley.R |only lattice-0.20-41/lattice/data/environmental.R |only lattice-0.20-41/lattice/data/ethanol.R |only lattice-0.20-41/lattice/data/melanoma.R |only lattice-0.20-41/lattice/data/singer.R |only lattice-0.20-44/lattice/ChangeLog | 173 +++++ lattice-0.20-44/lattice/DESCRIPTION | 10 lattice-0.20-44/lattice/MD5 | 43 - lattice-0.20-44/lattice/R/bwplot.R | 45 - lattice-0.20-44/lattice/R/cloud.R | 7 lattice-0.20-44/lattice/R/legend.R | 298 ++++++++-- lattice-0.20-44/lattice/R/print.trellis.R | 4 lattice-0.20-44/lattice/R/settings.R | 5 lattice-0.20-44/lattice/data/barley.rda |only lattice-0.20-44/lattice/data/environmental.rda |only lattice-0.20-44/lattice/data/ethanol.rda |only lattice-0.20-44/lattice/data/melanoma.rda |only lattice-0.20-44/lattice/data/singer.rda |only lattice-0.20-44/lattice/inst/po/en@quot/LC_MESSAGES/R-lattice.mo |binary lattice-0.20-44/lattice/inst/po/fr/LC_MESSAGES/R-lattice.mo |binary lattice-0.20-44/lattice/inst/po/it |only lattice-0.20-44/lattice/man/draw.colorkey.Rd | 4 lattice-0.20-44/lattice/man/levelplot.Rd | 43 + lattice-0.20-44/lattice/man/panel.axis.Rd | 12 lattice-0.20-44/lattice/man/panel.cloud.Rd | 4 lattice-0.20-44/lattice/po/R-fr.po | 51 - lattice-0.20-44/lattice/po/R-it.po |only lattice-0.20-44/lattice/po/R-lattice.pot | 4 lattice-0.20-44/lattice/tests/colorkey-title.R |only 29 files changed, 550 insertions(+), 153 deletions(-)
Title: Row by Row Data Processing Tool, Using 'DataSailr' Script
Description: A row by row data processing tool. You can write data processing code in 'DataSailr' script which is specially intended for data manipulation. The package uses 'libsailr' (C/C++ library) for its 'DataSailr' code parsing and its execution.
Author: Toshihiro Umehara [aut, cre],
Troy Hanson [cph, ctb] (uthash),
Howard Hinnant [cph, ctb] (date.h),
Adrian Colomitchi [cph, ctb] (date.h),
Florian Dang [cph, ctb] (date.h),
Paul Thompson [cph, ctb] (date.h),
Tomasz Kamiński [cph, ctb] (date.h),
Nemanja Trifunovic [cph, ctb] (utfcpp),
Kim Grasman [cph, ctb] (getopt_port),
Jon Clayden [cph, ctb] (ore package),
K.Kosako [cph, ctb] (onigmo author),
K.Takata [cph, ctb] (onigmo author),
Byte [cph, ctb] (onigmo contributor),
KUBO Takehiro [cph, ctb] (onigmo contributor),
Free Software Foundation, Inc [cph],
X Consortium [cph]
Maintainer: Toshihiro Umehara <toshi@niceume.com>
Diff between datasailr versions 0.8.7 dated 2020-11-26 and 0.8.8 dated 2021-05-02
datasailr-0.8.7/datasailr/man/author.Rd |only datasailr-0.8.7/datasailr/man/test_sail.Rd |only datasailr-0.8.8/datasailr/DESCRIPTION | 8 datasailr-0.8.8/datasailr/MD5 | 35 +- datasailr-0.8.8/datasailr/NAMESPACE | 2 datasailr-0.8.8/datasailr/NEWS.md | 6 datasailr-0.8.8/datasailr/R/data_sailr_main.R | 4 datasailr-0.8.8/datasailr/README.md | 41 ++- datasailr-0.8.8/datasailr/configure | 18 - datasailr-0.8.8/datasailr/configure.ac | 2 datasailr-0.8.8/datasailr/inst/CITATION |only datasailr-0.8.8/datasailr/inst/unit_tests/test_arithmetic.R | 20 - datasailr-0.8.8/datasailr/inst/unit_tests/test_if.R | 35 +- datasailr-0.8.8/datasailr/inst/unit_tests/test_push_row.R | 60 ++--- datasailr-0.8.8/datasailr/inst/unit_tests/test_regexp.R | 72 +++--- datasailr-0.8.8/datasailr/man/sail.Rd | 4 datasailr-0.8.8/datasailr/src/Onigmo/st.h | 2 datasailr-0.8.8/datasailr/src/libsailr/HISTORY.md | 7 datasailr-0.8.8/datasailr/src/libsailr/lex.l | 6 datasailr-0.8.8/datasailr/src/libsailr/lex.yy.c | 142 ++++++------ 20 files changed, 253 insertions(+), 211 deletions(-)
Title: Computations Around Bayesian Predictive Power
Description: Implements functions to update Bayesian Predictive Power Computations after not stopping a clinical trial at an interim analysis. Such an interim analysis can either be blinded or unblinded. Code is provided for Normally distributed endpoints with known variance, with a prominent example being the hazard ratio.
Author: Kaspar Rufibach, Paul Jordan, Markus Abt
Maintainer: Kaspar Rufibach <kaspar.rufibach@roche.com>
Diff between bpp versions 1.0.0 dated 2016-12-13 and 1.0.1 dated 2021-05-02
bpp-1.0.0/bpp/inst/doc/bpp_after_blinded_interim.R |only bpp-1.0.0/bpp/inst/doc/bpp_after_blinded_interim.Rmd |only bpp-1.0.0/bpp/inst/doc/bpp_after_blinded_interim.html |only bpp-1.0.0/bpp/vignettes/bpp_after_blinded_interim.Rmd |only bpp-1.0.1/bpp/DESCRIPTION | 8 +- bpp-1.0.1/bpp/MD5 | 30 ++++---- bpp-1.0.1/bpp/NEWS | 7 + bpp-1.0.1/bpp/R/bpp.r | 7 + bpp-1.0.1/bpp/R/bpp_1interim.r | 10 ++ bpp-1.0.1/bpp/R/bpp_2interim.r | 9 ++ bpp-1.0.1/bpp/build/vignette.rds |binary bpp-1.0.1/bpp/inst/doc/bpp.R |only bpp-1.0.1/bpp/inst/doc/bpp.Rmd |only bpp-1.0.1/bpp/inst/doc/bpp.html |only bpp-1.0.1/bpp/man/bpp-package.Rd | 2 bpp-1.0.1/bpp/man/bpp.Rd | 4 - bpp-1.0.1/bpp/man/bpp_1interim.Rd | 65 ++++++++++-------- bpp-1.0.1/bpp/man/bpp_2interim.Rd | 7 + bpp-1.0.1/bpp/vignettes/biblio.bib | 14 +-- bpp-1.0.1/bpp/vignettes/bpp.Rmd |only 20 files changed, 103 insertions(+), 60 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-24 0.1.2
2021-01-31 0.1.1
2020-12-14 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-21 0.1.2
2021-01-29 0.1.1
Title: Access the 'Public Transport Victoria' Timetable API
Description: Access the 'Public Transport Victoria' Timetable API
<https://www.ptv.vic.gov.au/footer/data-and-reporting/datasets/ptv-timetable-api/>,
with results returned as familiar R data structures. Retrieve information on
stops, routes, disruptions, departures, and more.
Author: David Neuzerling [aut, cre, cph]
Maintainer: David Neuzerling <david@neuzerling.com>
Diff between ptvapi versions 1.1.3 dated 2020-08-27 and 2.0.1 dated 2021-05-02
DESCRIPTION | 7 - MD5 | 108 +++++++++++++++------------- NEWS.md |only R/departures.R | 10 ++ R/directions.R | 37 +++++++-- R/disruptions.R | 19 +++-- R/fare-estimate.R | 11 +- R/geopath.R |only R/outlets.R | 13 ++- R/patterns.R | 25 +++--- R/ptvapi.R | 8 ++ R/route-types.R | 61 +++++++++++++++- R/routes.R | 114 +++++++++++++++++++++--------- R/runs.R | 100 ++++++++++++++++++++++---- R/search.R | 19 +++-- R/stops.R | 47 ++++++++++-- R/url-manipulation.R | 10 +- R/zzz.R |only README.md | 28 +++---- man/cached_route_types.Rd |only man/departure_to_tibble.Rd | 3 man/departures.Rd | 9 +- man/describe_route_type.Rd |only man/directions.Rd | 9 +- man/directions_on_route.Rd | 5 - man/disruptions.Rd | 12 +-- man/disruptions_on_route.Rd | 4 - man/fare_estimate.Rd | 2 man/figures |only man/geopath_to_tibble.Rd |only man/outlet_to_tibble.Rd | 6 + man/outlets.Rd | 4 + man/outlets_nearby.Rd | 4 + man/parse_directions_content.Rd | 3 man/parse_fare_estimate_content.Rd | 4 - man/patterns.Rd | 24 +++--- man/ptv_search.Rd | 4 - man/ptvapi.Rd | 6 + man/route_information.Rd | 32 ++++++-- man/route_to_tibble.Rd | 23 +++--- man/routes.Rd | 20 ++--- man/run_information.Rd | 39 ++++++++-- man/run_to_tibble.Rd | 10 +- man/runs_on_route.Rd | 19 +++-- man/search_outlets.Rd | 4 - man/search_routes.Rd | 26 +++--- man/search_stops.Rd | 5 - man/stop_information.Rd | 8 +- man/stop_to_tibble.Rd | 6 + man/stops_nearby.Rd | 5 - man/stops_on_route.Rd | 11 +- man/translate_route_type.Rd | 17 +++- tests/testthat/test-insecure-connection.R |only tests/testthat/test-patterns.R | 2 tests/testthat/test-route-types.R | 22 +++++ tests/testthat/test-routes.R | 14 +++ tests/testthat/test-runs.R | 35 ++++++++- tests/testthat/test-search-outlets.R | 15 +-- tests/testthat/test-url-manipulation.R | 14 +-- 59 files changed, 743 insertions(+), 300 deletions(-)
Title: Some 'MASS' Enhancements
Description: Some enhancements, extensions and additions
to the facilities of the recommended 'MASS' package
that are useful mainly for teaching purposes, with
more convenient default settings and user interfaces.
Key functions from 'MASS' are imported and re-exported
to avoid masking conflicts. In addition we provide
some additional functions mainly used to illustrate
coding paradigms and techniques, such as Gramm-Schmidt
orthogonalisation and generalised eigenvalue problems.
Author: Bill Venables
Maintainer: Bill Venables <bill.venables@gmail.com>
Diff between MASSExtra versions 1.1.1 dated 2021-03-01 and 1.1.2 dated 2021-05-02
DESCRIPTION | 6 - MD5 | 19 ++- NAMESPACE | 4 R/MASS_transfers.R | 2 R/kde_2d_mass.R | 237 +++++++++++++++++++++++++++++++++--------------- build/vignette.rds |binary inst/doc/rationale.html | 39 +++---- man/hr_levels.Rd |only man/kde_1d.Rd | 6 - man/kde_2d.Rd | 10 +- man/reexports.Rd | 3 11 files changed, 214 insertions(+), 112 deletions(-)
Title: PC Algorithm with the Principle of Mendelian Randomization
Description: A PC Algorithm with the Principle of Mendelian Randomization. This package implements the MRPC
(PC with the principle of Mendelian randomization) algorithm to infer causal graphs. It also
contains functions to simulate data under a certain topology, to visualize a graph in different
ways, and to compare graphs and quantify the differences.
See Badsha and Fu (2019) <doi:10.3389/fgene.2019.00460>,Badsha, Martin and Fu (2018) <arXiv:1806.01899>.
Author: Md. Bahadur Badsha [aut, cre],Evan A Martin [ctb] and Audrey Qiuyan Fu [aut]
Maintainer: Md Bahadur Badsha <mbbadshar@gmail.com>
Diff between MRPC versions 2.3.0 dated 2021-03-14 and 2.3.1 dated 2021-05-02
DESCRIPTION | 10 ++--- MD5 | 66 +++++++++++++++++------------------ R/MRPC.R | 70 +++++++++++++++++--------------------- man/CompareMethodsNodeOrdering.Rd | 2 - man/CompareMethodsVStructure.Rd | 2 - man/CutModules.Rd | 2 - man/Data_GEUVADIS.Rd | 2 - man/EdgeOrientation.Rd | 5 +- man/IdentifyAssociatedPCs.Rd | 2 - man/MRPC.Rd | 34 +++++++++++++++--- man/MRPCclass.Rd | 2 - man/MRPCtruth.Rd | 2 - man/ModiSkeleton.Rd | 4 +- man/PlotGraphWithModules.Rd | 2 - man/RecallPrecision.Rd | 2 - man/RobustCor.Rd | 2 - man/SeqFDR.Rd | 2 - man/SimulateData.Rd | 2 - man/SimulateData2P.Rd | 2 - man/SimulateData3P.Rd | 2 - man/SimulateDataNP.Rd | 2 - man/aSHD.Rd | 2 - man/data_examples.Rd | 58 +++++++++++++++++-------------- man/data_with_outliers.Rd | 2 - man/empty.Rd | 2 - man/mpinv.Rd | 2 - man/simu_data_M0.Rd | 2 - man/simu_data_M1.Rd | 2 - man/simu_data_M2.Rd | 2 - man/simu_data_M3.Rd | 2 - man/simu_data_M4.Rd | 2 - man/simu_data_layered.Rd | 2 - man/simu_data_multiparent.Rd | 2 - man/simu_data_starshaped.Rd | 2 - 34 files changed, 162 insertions(+), 139 deletions(-)
Title: Send Messages, Images, R Objects and Files to 'Slack'
Channels/Users
Description: 'Slack' <https://slack.com/> provides a service for teams to
collaborate by sharing messages, images, links, files and more. Functions are provided
that make it possible to interact with the 'Slack' platform 'API'. When
you need to share information or data from R, rather than resort to copy/
paste in e-mails or other services like 'Skype' <https://www.skype.com/en/>, you
can use this package to send well-formatted output from multiple R objects and
expressions to all teammates at the same time with little effort. You can also
send images from the current graphics device, R objects, and upload files.
Author: Bob Rudis [aut, cre], Jay Jacobs [ctb], David Severski [ctb],
Quinn Weber [ctb], Konrad Karczewski [ctb], Shinya Uryu [ctb],
Gregory Jefferis [ctb], Ed Niles [ctb], Rick Saporta [ctb],
Jonathan Sidi [aut, ctb], Matt Kaye [aut, ctb], Xinye Li [ctb], Andrie de Vries [aut, ctb]
Maintainer: Matt Kaye <mrkaye97@gmail.com>
Diff between slackr versions 2.2.0 dated 2021-03-04 and 2.3.0 dated 2021-05-02
slackr-2.2.0/slackr/R/save_slackr.R |only slackr-2.2.0/slackr/R/tex_slackr.R |only slackr-2.2.0/slackr/man/slackr_census_fun.Rd |only slackr-2.3.0/slackr/DESCRIPTION | 8 slackr-2.3.0/slackr/MD5 | 120 +++--- slackr-2.3.0/slackr/NAMESPACE | 7 slackr-2.3.0/slackr/NEWS.md | 7 slackr-2.3.0/slackr/R/call_slack_api.R | 35 - slackr-2.3.0/slackr/R/call_slack_internals.R | 49 +- slackr-2.3.0/slackr/R/deprecated.r | 51 ++ slackr-2.3.0/slackr/R/gg_slackr.R | 50 +- slackr-2.3.0/slackr/R/register_onexit.R | 94 ++--- slackr-2.3.0/slackr/R/slackr.R | 104 ++--- slackr-2.3.0/slackr/R/slackr_bot.r | 48 +- slackr-2.3.0/slackr/R/slackr_csv.R |only slackr-2.3.0/slackr/R/slackr_delete.R | 16 slackr-2.3.0/slackr/R/slackr_dev.R | 26 - slackr-2.3.0/slackr/R/slackr_history.R | 20 - slackr-2.3.0/slackr/R/slackr_save.R |only slackr-2.3.0/slackr/R/slackr_setup.r | 93 ++++- slackr-2.3.0/slackr/R/slackr_tex.R |only slackr-2.3.0/slackr/R/slackr_upload.R | 38 +- slackr-2.3.0/slackr/R/slackr_utils.R | 34 - slackr-2.3.0/slackr/R/text_slackr.r | 74 ++-- slackr-2.3.0/slackr/build/vignette.rds |binary slackr-2.3.0/slackr/inst/doc/scoped-bot-setup.Rmd | 4 slackr-2.3.0/slackr/inst/doc/scoped-bot-setup.html | 302 +--------------- slackr-2.3.0/slackr/inst/doc/using-slackr.R | 2 slackr-2.3.0/slackr/inst/doc/using-slackr.Rmd | 2 slackr-2.3.0/slackr/inst/doc/using-slackr.html | 330 ++---------------- slackr-2.3.0/slackr/inst/doc/webhook-setup.html | 268 -------------- slackr-2.3.0/slackr/man/create_config_file.Rd |only slackr-2.3.0/slackr/man/dev.slackr.Rd | 2 slackr-2.3.0/slackr/man/dev_slackr.Rd | 2 slackr-2.3.0/slackr/man/ggslackr.Rd | 2 slackr-2.3.0/slackr/man/register_onexit.Rd | 47 +- slackr-2.3.0/slackr/man/save.slackr.Rd | 2 slackr-2.3.0/slackr/man/save_slackr.Rd | 53 +- slackr-2.3.0/slackr/man/slackr.Rd | 4 slackr-2.3.0/slackr/man/slackrBot.Rd | 2 slackr-2.3.0/slackr/man/slackrChannels.Rd | 2 slackr-2.3.0/slackr/man/slackrChtrans.Rd | 4 slackr-2.3.0/slackr/man/slackrIms.Rd | 2 slackr-2.3.0/slackr/man/slackrMsg.Rd | 2 slackr-2.3.0/slackr/man/slackrSetup.Rd | 2 slackr-2.3.0/slackr/man/slackrUpload.Rd | 2 slackr-2.3.0/slackr/man/slackrUsers.Rd | 2 slackr-2.3.0/slackr/man/slackr_bot.Rd | 10 slackr-2.3.0/slackr/man/slackr_csv.Rd |only slackr-2.3.0/slackr/man/slackr_dev.Rd | 6 slackr-2.3.0/slackr/man/slackr_history.Rd | 2 slackr-2.3.0/slackr/man/slackr_msg.Rd | 4 slackr-2.3.0/slackr/man/slackr_save.Rd |only slackr-2.3.0/slackr/man/slackr_setup.Rd | 4 slackr-2.3.0/slackr/man/slackr_teardown.Rd |only slackr-2.3.0/slackr/man/slackr_tex.Rd |only slackr-2.3.0/slackr/man/slackr_upload.Rd | 2 slackr-2.3.0/slackr/man/tex_slackr.Rd | 76 +--- slackr-2.3.0/slackr/man/textSlackr.Rd | 4 slackr-2.3.0/slackr/man/text_slackr.Rd | 4 slackr-2.3.0/slackr/man/with_pagination.Rd | 2 slackr-2.3.0/slackr/tests/testthat/test-connection.R | 55 ++- slackr-2.3.0/slackr/tests/testthat/test-deprecation.R | 35 + slackr-2.3.0/slackr/tests/testthat/test-posting.R | 65 ++- slackr-2.3.0/slackr/tests/testthat/test-zconfig.R |only slackr-2.3.0/slackr/vignettes/scoped-bot-setup.Rmd | 4 slackr-2.3.0/slackr/vignettes/using-slackr.Rmd | 2 67 files changed, 865 insertions(+), 1322 deletions(-)
Title: Diagnostic Tools for Hierarchical (Multilevel) Linear Models
Description: A suite of diagnostic tools for hierarchical
(multilevel) linear models. The tools include
not only leverage and traditional deletion diagnostics (Cook's
distance, covratio, covtrace, and MDFFITS) but also
convenience functions and graphics for residual analysis. Models
can be fit using either lmer in the 'lme4' package or lme in the 'nlme' package.
Author: Adam Loy [cre, aut],
Jaylin Lowe [aut],
Jack Moran [aut]
Maintainer: Adam Loy <loyad01@gmail.com>
Diff between HLMdiag versions 0.4.0 dated 2020-12-14 and 0.5.0 dated 2021-05-02
HLMdiag-0.4.0/HLMdiag/R/HLMresid.R |only HLMdiag-0.4.0/HLMdiag/R/quantile_functions.R |only HLMdiag-0.4.0/HLMdiag/man/HLMresid.mer.Rd |only HLMdiag-0.4.0/HLMdiag/man/diagnostics.Rd |only HLMdiag-0.4.0/HLMdiag/man/ggplot_qqnorm.Rd |only HLMdiag-0.4.0/HLMdiag/man/group_qqnorm.Rd |only HLMdiag-0.4.0/HLMdiag/man/hlm_augment.lmerMod.Rd |only HLMdiag-0.5.0/HLMdiag/DESCRIPTION | 23 HLMdiag-0.5.0/HLMdiag/MD5 | 49 HLMdiag-0.5.0/HLMdiag/NAMESPACE | 18 HLMdiag-0.5.0/HLMdiag/NEWS | 22 HLMdiag-0.5.0/HLMdiag/R/HLMdiag-defunct.R |only HLMdiag-0.5.0/HLMdiag/R/diagnostic_functions.R | 46 HLMdiag-0.5.0/HLMdiag/R/hlm_augment.R | 33 HLMdiag-0.5.0/HLMdiag/R/residual_functions.R |only HLMdiag-0.5.0/HLMdiag/R/utility_functions.R | 2 HLMdiag-0.5.0/HLMdiag/README.md | 2 HLMdiag-0.5.0/HLMdiag/build/vignette.rds |binary HLMdiag-0.5.0/HLMdiag/inst/doc/hlm_resid.html | 747 +++++--------- HLMdiag-0.5.0/HLMdiag/inst/doc/influence_diagnostics.Rmd | 3 HLMdiag-0.5.0/HLMdiag/inst/doc/influence_diagnostics.html | 401 ++----- HLMdiag-0.5.0/HLMdiag/inst/doc/jss_update.Rmd | 13 HLMdiag-0.5.0/HLMdiag/inst/doc/jss_update.html | 621 ++++------- HLMdiag-0.5.0/HLMdiag/inst/image/HLMdiag_hex.png |binary HLMdiag-0.5.0/HLMdiag/man/HLMdiag-defunct.Rd |only HLMdiag-0.5.0/HLMdiag/man/figures |only HLMdiag-0.5.0/HLMdiag/man/hlm_augment.Rd |only HLMdiag-0.5.0/HLMdiag/man/resid_conditional.Rd |only HLMdiag-0.5.0/HLMdiag/man/resid_marginal.Rd |only HLMdiag-0.5.0/HLMdiag/man/resid_ranef.Rd |only HLMdiag-0.5.0/HLMdiag/man/wages.Rd | 3 HLMdiag-0.5.0/HLMdiag/vignettes/influence_diagnostics.Rmd | 3 HLMdiag-0.5.0/HLMdiag/vignettes/jss_update.Rmd | 13 33 files changed, 754 insertions(+), 1245 deletions(-)
Title: Highest Quality GIF Encoder
Description: Multi-threaded GIF encoder written in Rust: <https://gif.ski/>.
Converts images to GIF animations using pngquant's efficient cross-frame
palettes and temporal dithering with thousands of colors per frame.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>),
Kornel Lesiński [cph] (Gifski Rust library)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between gifski versions 1.4.3 dated 2021-03-22 and 1.4.3-1 dated 2021-05-02
DESCRIPTION | 7 +++---- MD5 | 7 ++++--- NEWS | 3 +++ src/Makevars.ucrt |only src/Makevars.win | 2 +- 5 files changed, 11 insertions(+), 8 deletions(-)
Title: Text Corpus Analysis
Description: Text corpus data analysis, with full support for international text (Unicode). Functions for reading data from newline-delimited 'JSON' files, for normalizing and tokenizing text, for searching for term occurrences, and for computing term occurrence frequencies, including n-grams.
Author: Leslie Huang [cre, ctb],
Patrick O. Perry [aut, cph],
Finn Årup Nielsen [cph, dtc] (AFINN Sentiment Lexicon),
Martin Porter and Richard Boulton [ctb, cph, dtc] (Snowball Stemmer and
Stopword Lists),
The Regents of the University of California [ctb, cph] (Strtod Library
Procedure),
Carlo Strapparava and Alessandro Valitutti [cph, dtc] (WordNet-Affect
Lexicon),
Unicode, Inc. [cph, dtc] (Unicode Character Database)
Maintainer: Leslie Huang <lesliehuang@nyu.edu>
Diff between corpus versions 0.10.1 dated 2020-04-16 and 0.10.2 dated 2021-05-02
DESCRIPTION | 8 MD5 | 28 - inst/doc/chinese.html | 286 +++------------- inst/doc/corpus.Rmd | 2 inst/doc/corpus.html | 660 +++++++++++++------------------------- inst/doc/stemmer.html | 370 +++++---------------- inst/doc/textdata.html | 386 +++++----------------- man/affect_wordnet.Rd | 2 man/sentiment_afinn.Rd | 4 man/stem_snowball.Rd | 2 man/stopwords.Rd | 2 tests/testthat/test-frame.R | 1 tests/testthat/test-text_format.R | 25 + tests/testthat/test-text_locate.R | 1 vignettes/corpus.Rmd | 2 15 files changed, 544 insertions(+), 1235 deletions(-)