Title: Sotkanet Open Data Access and Analysis
Description: Access statistical information on welfare and health in Finland
from the Sotkanet open data portal <https://sotkanet.fi/sotkanet/fi/index>.
Author: Leo Lahti [aut, cre] (<https://orcid.org/0000-0001-5537-637X>),
Einari Happonen [aut],
Joona Lehtomaki [ctb],
Juuso Parkkinen [ctb],
Vesa Saaristo [ctb],
Pyry Kantanen [ctb]
Maintainer: Leo Lahti <leo.lahti@iki.fi>
Diff between sotkanet versions 0.9.48 dated 2017-05-16 and 0.9.76 dated 2021-05-03
DESCRIPTION | 53 - LICENSE | 4 MD5 | 52 - NAMESPACE | 1 NEWS.md | 45 R/GetDataSotkanet.R | 10 R/GetDataSotkanetSingleIndicator.R | 6 R/SotkanetData.R | 4 R/SotkanetIndicators.R | 2 R/base_url.R | 2 R/csv.R | 5 R/firstlib.R | 8 R/json.R | 6 R/sotkanet-package.R | 4 R/sotkanet.R | 7 README.md | 62 - build/vignette.rds |binary inst/CITATION | 8 inst/doc/tutorial.R | 42 inst/doc/tutorial.Rmd | 72 - inst/doc/tutorial.html | 1721 +++++++++++++++++++++++++------------ man/GetDataSotkanet.Rd | 20 man/SotkanetIndicators.Rd | 2 man/SotkanetRegions.Rd | 6 man/sotkanet-package.Rd | 4 tests/testthat/test-all.R | 8 vignettes/tutorial.Rmd | 72 - 27 files changed, 1461 insertions(+), 765 deletions(-)
Title: Tools to Analyse RFLP Data
Description: Provides functions to analyse DNA fragment samples (i.e. derived from RFLP-analysis) and standalone BLAST report files (i.e. DNA sequence analysis).
Author: Fabienne Flessa [aut],
Alexandra Kehl [aut] (<https://orcid.org/0000-0002-1547-0713>),
Mohammed Aslam Imtiaz [aut],
Matthias Kohl [aut, cre] (<https://orcid.org/0000-0001-9514-8910>)
Maintainer: Matthias Kohl <Matthias.Kohl@stamats.de>
Diff between RFLPtools versions 1.8 dated 2021-02-23 and 1.9 dated 2021-05-03
DESCRIPTION | 8 +++---- MD5 | 50 ++++++++++++++++++++++++------------------------ NEWS | 6 +++++ build/vignette.rds |binary data/BLASTdata.RData |binary data/RFLPdata.RData |binary data/RFLPref.RData |binary data/newDataGerm.RData |binary data/refDataGerm.RData |binary inst/doc/RFLPtools.html | 27 ++++++++++++++++--------- man/0RFLP-package.Rd | 4 +-- man/BLASTdata.Rd | 6 ++--- man/RFLPcombine.Rd | 2 - man/RFLPdist.Rd | 2 - man/RFLPdist2.Rd | 2 - man/RFLPdist2ref.Rd | 2 - man/RFLPlod.Rd | 2 - man/RFLPplot.Rd | 2 - man/RFLPqc.Rd | 2 - man/RFLPrefplot.Rd | 2 - man/nrBands.Rd | 2 - man/read.blast.Rd | 6 ++--- man/read.rflp.Rd | 2 - man/sim2dist.Rd | 2 - man/simMatrix.Rd | 8 +++---- man/write.hclust.Rd | 2 - 26 files changed, 76 insertions(+), 63 deletions(-)
Title: Single Cell Analysis and Differential Expression
Description: Analyzing and interactively exploring large-scale single-cell RNA-seq datasets. 'pagoda2' primarily performs normalization and differential gene expression analysis, with an interactive application for exploring single-cell RNA-seq datasets. It performs basic tasks such as cell size normalization, gene variance normalization, and can be used to identify subpopulations and run differential expression within individual samples. 'pagoda2' was written to rapidly process modern large-scale scRNAseq datasets of approximately 1e6 cells. The companion web application allows users to explore which gene expression patterns form the different subpopulations within your data. The package also serves as the primary method for preprocessing data for conos, <https://github.com/kharchenkolab/conos>. This package interacts with data available through the 'p2data' package, which is available in a 'drat' repository. To access this data package, see the instructions at <https://github.com/kharchenkolab/pagoda2>. The size of the 'p2data' package is approximately 6 MB.
Author: Nikolas Barkas [aut],
Viktor Petukhov [aut],
Peter Kharchenko [aut],
Simon Steiger [ctb],
Evan Biederstedt [cre, aut]
Maintainer: Evan Biederstedt <evan.biederstedt@gmail.com>
Diff between pagoda2 versions 1.0.2 dated 2021-03-04 and 1.0.3 dated 2021-05-03
pagoda2-1.0.2/pagoda2/man/multi2dend.Rd |only pagoda2-1.0.2/pagoda2/vignettes/figure_pagoda2 |only pagoda2-1.0.3/pagoda2/DESCRIPTION | 7 pagoda2-1.0.3/pagoda2/MD5 | 69 - pagoda2-1.0.3/pagoda2/R/Pagoda2.R | 294 ----- pagoda2-1.0.3/pagoda2/R/RcppExports.R | 4 pagoda2-1.0.3/pagoda2/R/helpers.R | 44 pagoda2-1.0.3/pagoda2/R/largeVis.R | 20 pagoda2-1.0.3/pagoda2/R/pagoda2WebApp.R | 2 pagoda2-1.0.3/pagoda2/R/pipelineHelpers.R | 50 pagoda2-1.0.3/pagoda2/README.md | 36 pagoda2-1.0.3/pagoda2/inst/doc/pagoda2.walkthrough.R | 2 pagoda2-1.0.3/pagoda2/inst/doc/pagoda2.walkthrough.Rmd | 7 pagoda2-1.0.3/pagoda2/inst/doc/pagoda2.walkthrough.html | 39 pagoda2-1.0.3/pagoda2/man/Pagoda2.Rd | 707 ------------- pagoda2-1.0.3/pagoda2/man/basicP2proc.Rd | 9 pagoda2-1.0.3/pagoda2/man/p2.generate.dr.go.Rd | 8 pagoda2-1.0.3/pagoda2/man/p2.generate.go.Rd | 8 pagoda2-1.0.3/pagoda2/man/p2.generate.human.go.Rd | 8 pagoda2-1.0.3/pagoda2/man/p2.generate.mouse.go.Rd | 8 pagoda2-1.0.3/pagoda2/man/projectKNNs.Rd | 13 pagoda2-1.0.3/pagoda2/src/RcppExports.cpp | 13 pagoda2-1.0.3/pagoda2/src/misc2.cpp | 26 pagoda2-1.0.3/pagoda2/vignettes/figure_pagoda2_walkthrough |only pagoda2-1.0.3/pagoda2/vignettes/pagoda2.walkthrough.Rmd | 7 pagoda2-1.0.3/pagoda2/vignettes/pagoda2.walkthrough.md | 55 - 26 files changed, 133 insertions(+), 1303 deletions(-)
Title: Computation and Visualization of Package Download Counts and
Percentiles
Description: Compute and visualize the cross-sectional and longitudinal number
and rank percentile of package downloads from RStudio's CRAN mirror.
Author: Peter Li [aut, cre]
Maintainer: Peter Li <lindbrook@gmail.com>
Diff between packageRank versions 0.4.1 dated 2021-04-06 and 0.4.2 dated 2021-05-03
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS | 15 +++++++++++++++ R/checkPackage.R | 2 +- R/cranDownloads.R | 41 ++++++++++++++++------------------------- R/filteredDownloads.R | 6 ++++-- R/logDate.R | 21 +++++++++------------ R/sizeFilter.R | 18 ++++++------------ README.md | 13 ++++++------- man/filteredDownloads.Rd | 4 +++- 10 files changed, 73 insertions(+), 73 deletions(-)
Title: Kernel k Nearest Neighbors
Description: Extends the simple k-nearest neighbors algorithm by incorporating numerous kernel functions and a variety of distance metrics. The package takes advantage of 'RcppArmadillo' to speed up the calculation of distances between observations.
Author: Lampros Mouselimis [aut, cre] (<https://orcid.org/0000-0002-8024-1546>)
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between KernelKnn versions 1.1.0 dated 2019-11-29 and 1.1.1 dated 2021-05-03
DESCRIPTION | 16 MD5 | 33 NEWS.md | 5 README.md | 2 build/vignette.rds |binary inst/CITATION |only inst/doc/binary_classification_using_the_ionosphere_data.R | 36 inst/doc/binary_classification_using_the_ionosphere_data.html | 429 +++++----- inst/doc/image_classification_using_MNIST_CIFAR_data.R | 30 inst/doc/image_classification_using_MNIST_CIFAR_data.html | 419 +++++---- inst/doc/regression_using_the_housing_data.R | 36 inst/doc/regression_using_the_housing_data.html | 365 ++++---- man/KernelKnn.Rd | 17 man/KernelKnnCV.Rd | 18 man/distMat.KernelKnn.Rd | 16 man/distMat.KernelKnnCV.Rd | 17 man/distMat.knn.index.dist.Rd | 9 man/knn.index.dist.Rd | 10 18 files changed, 793 insertions(+), 665 deletions(-)
Title: Time Dependent Point Process Modelling
Description: Fits and analyses time dependent marked point process models with an emphasis on earthquake modelling. For a more detailed introduction to the package, see the topic "PtProcess". A list of recent changes can be found in the topic "Change Log".
Author: David Harte
Maintainer: David Harte <d.s.harte@gmail.com>
Diff between PtProcess versions 3.3-13 dated 2017-11-16 and 3.3-16 dated 2021-05-03
DESCRIPTION | 10 +++++----- MD5 | 24 ++++++++++++------------ build/partial.rdb |binary data/NthChina.rda |binary data/Ogata.rda |binary data/Phuket.rda |binary data/Tangshan.rda |binary inst/CITATION | 9 +++++---- inst/doc/index.html | 16 ++++++++-------- man/Changes.Rd | 3 +++ man/Phuket.Rd | 2 +- man/PtProcess.Rd | 4 ++-- man/mpp.Rd | 2 +- 13 files changed, 37 insertions(+), 33 deletions(-)
Title: Gaussian Mixture Models, K-Means, Mini-Batch-Kmeans, K-Medoids
and Affinity Propagation Clustering
Description: Gaussian mixture models, k-means, mini-batch-kmeans, k-medoids and affinity propagation clustering with the option to plot, validate, predict (new data) and estimate the optimal number of clusters. The package takes advantage of 'RcppArmadillo' to speed up the computationally intensive parts of the functions. For more information, see (i) "Clustering in an Object-Oriented Environment" by Anja Struyf, Mia Hubert, Peter Rousseeuw (1997), Journal of Statistical Software, <doi:10.18637/jss.v001.i04>; (ii) "Web-scale k-means clustering" by D. Sculley (2010), ACM Digital Library, <doi:10.1145/1772690.1772862>; (iii) "Armadillo: a template-based C++ library for linear algebra" by Sanderson et al (2016), The Journal of Open Source Software, <doi:10.21105/joss.00026>; (iv) "Clustering by Passing Messages Between Data Points" by Brendan J. Frey and Delbert Dueck, Science 16 Feb 2007: Vol. 315, Issue 5814, pp. 972-976, <doi:10.1126/science.1136800>.
Author: Lampros Mouselimis [aut, cre] (<https://orcid.org/0000-0002-8024-1546>),
Conrad Sanderson [cph] (Author of the C++ Armadillo library),
Ryan Curtin [cph] (Author of the C++ Armadillo library),
Siddharth Agrawal [cph] (Author of the C code of the Mini-Batch-Kmeans
algorithm
(https://github.com/siddharth-agrawal/Mini-Batch-K-Means)),
Brendan Frey [cph] (Author of the matlab code of the Affinity
propagation algorithm (for commercial use please contact the author
of the matlab code)),
Delbert Dueck [cph] (Author of the matlab code of the Affinity
propagation algorithm)
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between ClusterR versions 1.2.2 dated 2020-05-12 and 1.2.3 dated 2021-05-03
DESCRIPTION | 14 ++++----- MD5 | 17 ++++++----- NEWS.md | 6 ++++ R/clustering_functions.R | 6 +++- inst/CITATION |only inst/doc/the_clusterR_package.Rmd | 4 +- inst/doc/the_clusterR_package.html | 55 ++++++++++++++++++++++++------------- inst/include/ClusterRHeader.h | 42 ++++++++++++++-------------- man/Optimal_Clusters_KMeans.Rd | 3 ++ vignettes/the_clusterR_package.Rmd | 4 +- 10 files changed, 91 insertions(+), 60 deletions(-)
Title: Open Source Geometry Engine ('GEOS') R API
Description: Provides an R API to the Open Source Geometry Engine
('GEOS') library (<https://trac.osgeo.org/geos/>) and a vector format
with which to efficiently store 'GEOS' geometries. High-performance functions
to extract information from, calculate relationships between, and
transform geometries are provided. Finally, facilities to import
and export geometry vectors to other spatial formats are provided.
Author: Dewey Dunnington [aut, cre] (<https://orcid.org/0000-0002-9415-4582>),
Edzer Pebesma [aut] (<https://orcid.org/0000-0001-8049-7069>)
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>
Diff between geos versions 0.0.2 dated 2021-01-04 and 0.1.0 dated 2021-05-03
geos-0.0.2/geos/R/sf-compat.R |only geos-0.0.2/geos/R/vctrs-compat.R |only geos-0.0.2/geos/R/wk-compat.R |only geos-0.0.2/geos/tests/testthat/test-sf-compat.R |only geos-0.0.2/geos/tests/testthat/test-vctrs-compat.R |only geos-0.0.2/geos/tests/testthat/test-wk-compat.R |only geos-0.1.0/geos/DESCRIPTION | 13 geos-0.1.0/geos/MD5 | 117 ++--- geos-0.1.0/geos/NAMESPACE | 65 +++ geos-0.1.0/geos/NEWS.md | 26 + geos-0.1.0/geos/R/compat-sf.R |only geos-0.1.0/geos/R/compat-vctrs.R |only geos-0.1.0/geos/R/compat-wk.R |only geos-0.1.0/geos/R/geos-binary-atomic.R | 100 +++- geos-0.1.0/geos/R/geos-binary-geometry.R | 163 +++++++ geos-0.1.0/geos/R/geos-geometry.R | 117 ++++- geos-0.1.0/geos/R/geos-io.R | 53 +- geos-0.1.0/geos/R/geos-make.R | 45 +- geos-0.1.0/geos/R/geos-package.R | 1 geos-0.1.0/geos/R/geos-polygonize.R | 29 + geos-0.1.0/geos/R/geos-segment.R | 2 geos-0.1.0/geos/R/geos-strtree.R | 144 +++++- geos-0.1.0/geos/R/geos-unary-atomic.R | 59 +- geos-0.1.0/geos/R/geos-unary-geometry.R | 272 ++++++++++--- geos-0.1.0/geos/R/geos-unnest.R | 4 geos-0.1.0/geos/R/utils.R | 34 + geos-0.1.0/geos/R/zzz.R | 4 geos-0.1.0/geos/README.md | 30 - geos-0.1.0/geos/man/as_geos_geometry.Rd | 47 +- geos-0.1.0/geos/man/geos_centroid.Rd | 15 geos-0.1.0/geos/man/geos_distance.Rd | 3 geos-0.1.0/geos/man/geos_empty.Rd | 4 geos-0.1.0/geos/man/geos_intersection.Rd | 19 geos-0.1.0/geos/man/geos_make_point.Rd | 15 geos-0.1.0/geos/man/geos_minimum_bounding_circle.Rd |only geos-0.1.0/geos/man/geos_read_wkt.Rd | 37 - geos-0.1.0/geos/man/geos_strtree.Rd | 6 geos-0.1.0/geos/man/vctrs-methods.Rd |only geos-0.1.0/geos/man/wk-methods.Rd |only geos-0.1.0/geos/src/geos-binary-atomic.c | 98 +++- geos-0.1.0/geos/src/geos-binary-geometry.c | 164 +++++-- geos-0.1.0/geos/src/geos-common.c | 48 +- geos-0.1.0/geos/src/geos-common.h | 43 +- geos-0.1.0/geos/src/geos-geometry.c |only geos-0.1.0/geos/src/geos-io.c | 59 +- geos-0.1.0/geos/src/geos-make.c | 34 - geos-0.1.0/geos/src/geos-polygonize.c | 8 geos-0.1.0/geos/src/geos-segment.c | 6 geos-0.1.0/geos/src/geos-strtree.c | 149 +++---- geos-0.1.0/geos/src/geos-unary-atomic.c | 27 - geos-0.1.0/geos/src/geos-unary-geometry.c | 132 +++--- geos-0.1.0/geos/src/geos-writer.c |only geos-0.1.0/geos/src/handle-geos.c |only geos-0.1.0/geos/src/init.c | 56 ++ geos-0.1.0/geos/src/wk-impl.c |only geos-0.1.0/geos/tests/testthat/Rplots.pdf |binary geos-0.1.0/geos/tests/testthat/test-compat-sf.R |only geos-0.1.0/geos/tests/testthat/test-compat-vctrs.R |only geos-0.1.0/geos/tests/testthat/test-compat-wk.R |only geos-0.1.0/geos/tests/testthat/test-geos-binary-atomic.R | 37 + geos-0.1.0/geos/tests/testthat/test-geos-binary-geometry.R | 112 +++++ geos-0.1.0/geos/tests/testthat/test-geos-geometry.R | 75 ++- geos-0.1.0/geos/tests/testthat/test-geos-io.R | 80 +++ geos-0.1.0/geos/tests/testthat/test-geos-make.R | 13 geos-0.1.0/geos/tests/testthat/test-geos-polygonize.R | 28 + geos-0.1.0/geos/tests/testthat/test-geos-strtree.R | 47 +- geos-0.1.0/geos/tests/testthat/test-geos-unary-geometry.R | 135 +++++- geos-0.1.0/geos/tests/testthat/test-geos-unnest.R | 11 geos-0.1.0/geos/tests/testthat/test-utils.R | 15 69 files changed, 2071 insertions(+), 730 deletions(-)
Title: Fisher-Shannon Method
Description: Proposes non-parametric estimates of the Fisher information measure and the
Shannon entropy power. More theoretical and implementation details can be found
in Guignard et al. <doi:10.3389/feart.2020.00255>. A 'python' version of this
work is available on 'github' and 'PyPi' ('FiShPy').
Author: Fabian Guignard [aut],
Mohamed Laib [aut, cre]
Maintainer: Mohamed Laib <laib.med@gmail.com>
Diff between FiSh versions 1.0 dated 2019-12-16 and 1.1 dated 2021-05-03
DESCRIPTION | 17 +++------ MD5 | 13 +++---- R/FiSh.R | 10 +++-- R/SEP_FIM.R | 29 +++++++++------- build |only man/FiSh-package.Rd | 86 ++++++++++++++++++++++------------------------- man/SEP_FIM.Rd | 94 ++++++++++++++++++++++++++-------------------------- man/nsrk.Rd | 60 ++++++++++++++++----------------- 8 files changed, 154 insertions(+), 155 deletions(-)
Title: Phylogenetic Reconstruction and Analysis
Description: Allows for estimation of phylogenetic trees and networks
using Maximum Likelihood, Maximum Parsimony, distance methods and
Hadamard conjugation. Offers methods for tree comparison, model
selection and visualization of phylogenetic networks as described in
Schliep et al. (2017) <doi:10.1111/2041-210X.12760>.
Author: Klaus Schliep [aut, cre] (<https://orcid.org/0000-0003-2941-0161>),
Emmanuel Paradis [aut] (<https://orcid.org/0000-0003-3092-2199>),
Leonardo de Oliveira Martins [aut]
(<https://orcid.org/0000-0001-5247-1320>),
Alastair Potts [aut],
Tim W. White [aut],
Cyrill Stachniss [ctb],
Michelle Kendall [ctb],
Keren Halabi [ctb],
Richel Bilderbeek [ctb],
Kristin Winchell [ctb],
Liam Revell [ctb],
Mike Gilchrist [ctb],
Jeremy Beaulieu [ctb],
Brian O'Meara [ctb],
Long Qu [ctb]
Maintainer: Klaus Schliep <klaus.schliep@gmail.com>
Diff between phangorn versions 2.6.3 dated 2021-04-06 and 2.7.0 dated 2021-05-03
DESCRIPTION | 8 +- MD5 | 84 +++++++++++++------------- NEWS | 13 ++++ R/Densi.R | 2 R/bab.R | 32 ++-------- R/bootstrap.R | 20 +++--- R/distSeq.R | 2 R/distTree.R | 2 R/fitch64.R | 30 ++++----- R/mast.R | 2 R/networx.R | 26 ++++---- R/parsimony.R | 37 ++++------- R/phyDat.R | 8 +- R/phyDat2.R | 10 ++- R/phylo.R | 16 +++-- R/read.nexus.splits.R | 2 R/splits.R | 30 +++++---- R/transferBootstrap.R | 40 +----------- R/treedist.R | 91 ++++++++--------------------- TODO |only inst/doc/AdvancedFeatures.Rmd | 6 - inst/doc/AdvancedFeatures.html | 26 ++++---- inst/doc/Ancestral.html | 16 ++--- inst/doc/IntertwiningTreesAndNetworks.Rmd | 4 - inst/doc/IntertwiningTreesAndNetworks.html | 13 +--- inst/doc/Networx.Rmd | 4 - inst/doc/Networx.html | 21 +++--- inst/doc/Trees.R | 1 inst/doc/Trees.Rmd | 5 - inst/doc/Trees.html | 33 +++++----- inst/tinytest/test_bootstrap.R |only inst/tinytest/test_parsimony.R | 3 inst/tinytest/test_splits.R | 2 man/densiTree.Rd | 2 man/dist.hamming.Rd | 2 man/mast.Rd | 2 man/plotBS.Rd | 5 - man/pml.Rd | 6 - man/treedist.Rd | 2 src/Makevars | 1 vignettes/AdvancedFeatures.Rmd | 6 - vignettes/IntertwiningTreesAndNetworks.Rmd | 4 - vignettes/Networx.Rmd | 4 - vignettes/Trees.Rmd | 5 - 44 files changed, 287 insertions(+), 341 deletions(-)
Title: Secure Shell (SSH) Client for R
Description: Connect to a remote server over SSH to transfer files via SCP,
setup a secure tunnel, or run a command or script on the host while
streaming stdout and stderr directly to the client.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between ssh versions 0.7.0 dated 2020-07-21 and 0.8.0 dated 2021-05-03
DESCRIPTION | 8 MD5 | 19 NEWS | 3 build/vignette.rds |binary configure | 14 inst/doc/intro.Rmd | 2 inst/doc/intro.html | 1358 +--------------------------------------------------- src/Makevars.ucrt |only src/Makevars.win | 4 src/tunnel.c | 2 vignettes/intro.Rmd | 2 11 files changed, 67 insertions(+), 1345 deletions(-)
Title: Automatic Download, Linking, Manipulating Coordinates for Maps
Description: Maps are an important tool to visualise variables distribution across different spatial object. The mapping process require to link the data with coordinates and then generate the correspondent map. This package provide coordinates, linking and mapping functions for an automatic, flexible and easy approach of mapping workflow of different geographical statistical unit.Geographical coordinates are provided in the package and automatically linked with the input data to generate maps with internal provided functions or external functions.provide an easy, flexible and automatic approach to potentially download updated coordinates, to link statistical units with coordinates and to aggregate variables based on the spatial hierarchy of units. The object returned from the package can be used for thematic maps with the build-in functions provided in mapping or with other packages already available.
Author: Alessio Serafini [aut, cre],
Giancarlo Ferrara [aut]
Maintainer: Alessio Serafini <srf.alessio@gmail.com>
Diff between mapping versions 1.1 dated 2021-04-16 and 1.2 dated 2021-05-03
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- inst/doc/a-journey-into-mapping.html | 4 ++-- 3 files changed, 9 insertions(+), 9 deletions(-)
Title: Hierarchical Bayesian Modeling of Decision-Making Tasks
Description: Fit an array of decision-making tasks with computational models in
a hierarchical Bayesian framework. Can perform hierarchical Bayesian analysis of
various computational models with a single line of coding
(Ahn et al., 2017) <doi:10.1162/CPSY_a_00002>.
Author: Woo-Young Ahn [aut, cre],
Nate Haines [aut],
Lei Zhang [aut],
Harhim Park [ctb],
Jaeyeong Yang [ctb],
Jethro Lee [ctb]
Maintainer: Woo-Young Ahn <wooyoung.ahn@gmail.com>
Diff between hBayesDM versions 1.0.2 dated 2019-11-13 and 1.1.1 dated 2021-05-03
DESCRIPTION | 48 +++--- MD5 | 236 ++++++++++++++++++---------------- NAMESPACE | 5 NEWS.md | 15 ++ R/alt_delta.R |only R/alt_gamma.R |only R/bandit2arm_delta.R | 7 - R/bandit4arm2_kalman_filter.R | 5 R/bandit4arm_2par_lapse.R | 3 R/bandit4arm_4par.R | 3 R/bandit4arm_lapse.R | 3 R/bandit4arm_lapse_decay.R | 3 R/bandit4arm_singleA_lapse.R | 3 R/bart_ewmv.R |only R/bart_par4.R | 3 R/cgt_cm.R | 5 R/choiceRT_ddm.R | 7 - R/choiceRT_ddm_single.R | 7 - R/choiceRT_lba.R | 2 R/choiceRT_lba_single.R | 2 R/cra_exp.R | 3 R/cra_linear.R | 3 R/dbdm_prob_weight.R | 3 R/dd_cs.R | 5 R/dd_cs_single.R | 5 R/dd_exp.R | 5 R/dd_hyperbolic.R | 3 R/dd_hyperbolic_single.R | 3 R/gng_m1.R | 5 R/gng_m2.R | 5 R/gng_m3.R | 5 R/gng_m4.R | 5 R/hBayesDM_model.R | 4 R/igt_orl.R | 5 R/igt_pvl_decay.R | 7 - R/igt_pvl_delta.R | 7 - R/igt_vpp.R | 7 - R/peer_ocu.R | 3 R/preprocess_funcs.R | 80 +++++++++++ R/prl_ewa.R | 5 R/prl_fictitious.R | 5 R/prl_fictitious_multipleB.R | 5 R/prl_fictitious_rp.R | 7 - R/prl_fictitious_rp_woa.R | 7 - R/prl_fictitious_woa.R | 5 R/prl_rp.R | 5 R/prl_rp_multipleB.R | 5 R/pst_Q.R |only R/pst_gainloss_Q.R | 3 R/ra_noLA.R | 5 R/ra_noRA.R | 5 R/ra_prospect.R | 5 R/rdt_happiness.R | 3 R/task2AFC_sdt.R |only R/ts_par4.R | 7 - R/ts_par6.R | 7 - R/ts_par7.R | 7 - R/ug_bayes.R | 5 R/ug_delta.R | 5 R/wcs_sql.R | 3 inst/extdata/alt_exampleData.txt |only inst/extdata/task2AFC_exampleData.txt |only inst/stan_files/alt_delta.stan |only inst/stan_files/alt_gamma.stan |only inst/stan_files/bart_ewmv.stan |only inst/stan_files/pst_Q.stan |only inst/stan_files/task2AFC_sdt.stan |only man/alt_delta.Rd |only man/alt_gamma.Rd |only man/bandit2arm_delta.Rd | 28 ++-- man/bandit4arm2_kalman_filter.Rd | 26 ++- man/bandit4arm_2par_lapse.Rd | 24 ++- man/bandit4arm_4par.Rd | 24 ++- man/bandit4arm_lapse.Rd | 24 ++- man/bandit4arm_lapse_decay.Rd | 24 ++- man/bandit4arm_singleA_lapse.Rd | 24 ++- man/bart_ewmv.Rd |only man/bart_par4.Rd | 23 ++- man/cgt_cm.Rd | 25 ++- man/choiceRT_ddm.Rd | 30 ++-- man/choiceRT_ddm_single.Rd | 31 ++-- man/choiceRT_lba.Rd | 24 ++- man/choiceRT_lba_single.Rd | 24 ++- man/cra_exp.Rd | 23 ++- man/cra_linear.Rd | 23 ++- man/dbdm_prob_weight.Rd | 24 ++- man/dd_cs.Rd | 25 ++- man/dd_cs_single.Rd | 25 ++- man/dd_exp.Rd | 25 ++- man/dd_hyperbolic.Rd | 24 ++- man/dd_hyperbolic_single.Rd | 24 ++- man/gng_m1.Rd | 25 ++- man/gng_m2.Rd | 25 ++- man/gng_m3.Rd | 25 ++- man/gng_m4.Rd | 25 ++- man/hBayesDM_model.Rd | 14 +- man/igt_orl.Rd | 25 ++- man/igt_pvl_decay.Rd | 28 ++-- man/igt_pvl_delta.Rd | 28 ++-- man/igt_vpp.Rd | 27 ++- man/peer_ocu.Rd | 23 ++- man/plot.hBayesDM.Rd | 10 + man/plotDist.Rd | 13 + man/plotHDI.Rd | 13 + man/prl_ewa.Rd | 25 ++- man/prl_fictitious.Rd | 26 ++- man/prl_fictitious_multipleB.Rd | 26 ++- man/prl_fictitious_rp.Rd | 28 ++-- man/prl_fictitious_rp_woa.Rd | 28 ++-- man/prl_fictitious_woa.Rd | 26 ++- man/prl_rp.Rd | 25 ++- man/prl_rp_multipleB.Rd | 26 ++- man/pst_Q.Rd |only man/pst_gainloss_Q.Rd | 24 ++- man/ra_noLA.Rd | 25 ++- man/ra_noRA.Rd | 25 ++- man/ra_prospect.Rd | 25 ++- man/rdt_happiness.Rd | 24 ++- man/task2AFC_sdt.Rd |only man/ts_par4.Rd | 27 ++- man/ts_par6.Rd | 27 ++- man/ts_par7.Rd | 27 ++- man/ug_bayes.Rd | 25 ++- man/ug_delta.Rd | 25 ++- man/wcs_sql.Rd | 23 ++- tests/testthat/test_alt_delta.R |only tests/testthat/test_alt_gamma.R |only tests/testthat/test_bart_ewmv.R |only tests/testthat/test_pst_Q.R |only tests/testthat/test_task2AFC_sdt.R |only 130 files changed, 1357 insertions(+), 554 deletions(-)
Title: Two-Steps Benchmarks for Time Series Disaggregation
Description: The twoStepsBenchmark() and threeRuleSmooth() functions allow you to
disaggregate a low-frequency time-serie with time-series of higher frequency,
using the French National Accounts methodology. The aggregated sum of the
resulting time-serie is strictly equal to the low-frequency serie within the
benchmarking window. Typically, the low-frequency serie is an annual one,
unknown for the last year, and the high frequency one is either quarterly or
mensual. See "Methodology of quarterly national accounts", Insee Méthodes
N°126, by Insee (2012, ISBN:978-2-11-068613-8).
Author: Arnaud Feldmann [aut, cre] (<https://orcid.org/0000-0003-0109-7505>),
Franck Arnaud [ctb] (barplot base graphics method for the mts class),
Institut national de la statistique et des études économiques [cph]
(https://www.insee.fr/)
Maintainer: Arnaud Feldmann <arnaud.feldmann@insee.fr>
Diff between disaggR versions 0.2.0.3 dated 2021-04-11 and 0.2.1 dated 2021-05-03
DESCRIPTION | 8 MD5 | 66 +- NEWS.md | 14 R/bflSmooth.R | 2 R/plot.R | 25 R/praislm.R | 2 R/reView.R | 18 R/threeRuleSmooth.R | 14 R/twoStepsBenchmark.R | 17 R/utils.R | 30 + man/bflSmooth_matrices_factory.Rd | 34 - man/construction.Rd | 40 - man/default_col_pal.Rd | 26 man/default_theme_ggplot.Rd | 24 man/model.list.Rd | 58 +- man/prais.Rd | 90 +-- man/reView.Rd | 108 ++-- man/reexports.Rd | 32 - man/residuals_extrap.Rd | 56 +- man/rho.Rd | 48 - man/se.Rd | 42 - man/smoothed.part.Rd | 58 +- man/turnover.Rd | 40 - tests/figs/plots-r-4-0/gg-mts-indic.svg | 254 ++++----- tests/figs/plots-r-4-0/gg-mts-ins.svg | 218 ++++---- tests/figs/plots-r-4-0/gg-mts-rev.svg | 848 ++++++++++++++++---------------- tests/figs/plots-r-4-1/gg-mts-indic.svg | 254 ++++----- tests/figs/plots-r-4-1/gg-mts-ins.svg | 218 ++++---- tests/figs/plots-r-4-1/gg-mts-rev.svg | 848 ++++++++++++++++---------------- tests/testthat.R | 8 tests/testthat/shiny-withoutset/app.R | 16 tests/testthat/test-praislm.R | 36 - tests/testthat/test-threeRuleSmooth.R | 36 + tests/testthat/test-twoStepsBenchmark.R | 249 +++++---- 34 files changed, 1974 insertions(+), 1863 deletions(-)
Title: Supporting Objects for Sojourn Accelerometer Methods
Description: Stores objects (e.g. neural networks) that are needed for
using Sojourn accelerometer methods. For more information, see
Lyden K, Keadle S, Staudenmayer J, & Freedson P (2014)
<doi:10.1249/MSS.0b013e3182a42a2d>, Ellingson LD, Schwabacher IJ,
Kim Y, Welk GJ, & Cook DB (2016) <doi:10.1249/MSS.0000000000000915>,
and Hibbing PR, Ellingson LD, Dixon PM, & Welk GJ (2018)
<doi:10.1249/MSS.0000000000001486>.
Author: Paul R. Hibbing [aut, cre],
Kate Lyden [aut]
Maintainer: Paul R. Hibbing <paulhibbing@gmail.com>
Diff between Sojourn.Data versions 0.2.0 dated 2021-04-17 and 0.3.0 dated 2021-05-03
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS.md | 4 ++++ data/ALL.reg.nn.rda |binary data/class.nnn.6.rda |binary data/reg.nn.rda |binary data/youth_hipCounts.rda |binary data/youth_hipRaw.rda |binary data/youth_wristCounts.rda |binary data/youth_wristRaw.rda |binary 10 files changed, 17 insertions(+), 13 deletions(-)
Title: Probability Associator Time (PASS-T)
Description: Simulates judgments of frequency and duration based on
the Probability Associator Time (PASS-T) model. PASS-T is a memory
model based on a simple competitive artificial neural network. It
can imitate human judgments of frequency and duration, which have
been extensively studied in cognitive psychology
(e.g. Hintzman (1970) <doi:10.1037/h0028865>, Betsch et al. (2010)
<https://psycnet.apa.org/record/2010-18204-003>). The PASS-T model
is an extension of the PASS model (Sedlmeier, 2002,
ISBN:0198508638). The package provides an easy way to run
simulations, which can then be compared with empirical data in
human judgments of frequency and duration.
Author: Johannes Titz [aut, cre]
Maintainer: Johannes Titz <johannes.titz@gmail.com>
Diff between passt versions 0.1.1 dated 2019-12-05 and 0.1.3 dated 2021-05-03
DESCRIPTION | 10 MD5 | 10 NEWS.md | 8 build/vignette.rds |binary inst/doc/passt.html | 371 +--- vignettes/library.bib | 4239 +++++++++++++++++++++++++++----------------------- 6 files changed, 2431 insertions(+), 2207 deletions(-)
Title: Functions for Kernel Smoothing Supporting Wand & Jones (1995)
Description: Functions for kernel smoothing (and density estimation)
corresponding to the book:
Wand, M.P. and Jones, M.C. (1995) "Kernel Smoothing".
Author: Matt Wand [aut],
Cleve Moler [ctb] (LINPACK routines in src/d*),
Brian Ripley [trl, cre, ctb] (R port and updates)
Maintainer: Brian Ripley <ripley@stats.ox.ac.uk>
Diff between KernSmooth versions 2.23-18 dated 2020-10-29 and 2.23-20 dated 2021-05-03
DESCRIPTION | 10 ++++---- MD5 | 35 ++++++++++++++-------------- PORTING | 25 ++++++++++++++++++++ R/all.R | 3 ++ inst/po/de/LC_MESSAGES/R-KernSmooth.mo |binary inst/po/en@quot/LC_MESSAGES/R-KernSmooth.mo |binary inst/po/fr/LC_MESSAGES/R-KernSmooth.mo |binary inst/po/it/LC_MESSAGES/R-KernSmooth.mo |binary inst/po/ko/LC_MESSAGES/R-KernSmooth.mo |binary inst/po/pl/LC_MESSAGES/R-KernSmooth.mo |binary man/bkde.Rd | 5 +--- po/R-KernSmooth.pot | 7 ++++- po/R-de.po | 5 +++- po/R-fr.po | 11 ++++---- po/R-it.po | 5 +++- po/R-ko.po | 13 ++++++++-- po/R-pl.po | 5 +++- src/rlbin.f | 7 +++++ tests/locpoly.R |only 19 files changed, 93 insertions(+), 38 deletions(-)
Title: Generalized UniFrac Distances and Distance-Based Multivariate
Analysis of Variance
Description: Implementation of generalized UniFrac distances for comparing microbial communities and three extensions to the PERMANOVA procedure. The three extensions are: (1) PERMANOVA using the Freedman-Lane permutation scheme; (2) PERMANOVA omnibus test using multiple matrices; and (3) Analytical approach to approximating PERMANOVA p-value.
Author: Jun Chen
Maintainer: Jun Chen <chen.jun2@mayo.edu>
Diff between GUniFrac versions 1.1 dated 2018-02-12 and 1.2 dated 2021-05-03
DESCRIPTION | 16 +- MD5 | 13 +- NAMESPACE | 20 ++- R/GUniFrac.R | 332 +++++++++++++++++++++++++++++++++++++++++++++++++++-- man/GUniFrac.Rd | 5 man/PermanovaG.Rd | 5 man/PermanovaG2.Rd |only man/adonis3.Rd |only man/dmanova.Rd |only 9 files changed, 358 insertions(+), 33 deletions(-)
Title: Spatial Regression Analysis
Description: A collection of all the estimation functions for spatial cross-sectional models (on lattice/areal data using spatial weights matrices) contained up to now in 'spdep', 'sphet' and 'spse'. These model fitting functions include maximum likelihood methods for cross-sectional models proposed by 'Cliff' and 'Ord' (1973, ISBN:0850860369) and (1981, ISBN:0850860814), fitting methods initially described by 'Ord' (1975) <doi:10.1080/01621459.1975.10480272>. The models are further described by 'Anselin' (1988) <doi:10.1007/978-94-015-7799-1>. Spatial two stage least squares and spatial general method of moment models initially proposed by 'Kelejian' and 'Prucha' (1998) <doi:10.1023/A:1007707430416> and (1999) <doi:10.1111/1468-2354.00027> are provided. Impact methods and MCMC fitting methods proposed by 'LeSage' and 'Pace' (2009) <doi:10.1201/9781420064254> are implemented for the family of cross-sectional spatial regression models. Methods for fitting the log determinant term in maximum likelihood and MCMC fitting are compared by 'Bivand et al.' (2013) <doi:10.1111/gean.12008>, and model fitting methods by 'Bivand' and 'Piras' (2015) <doi:10.18637/jss.v063.i18>; both of these articles include extensive lists of references. 'spatialreg' >= 1.1-* correspond to 'spdep' >= 1.1-1, in which the model fitting functions are deprecated and pass through to 'spatialreg', but will mask those in 'spatialreg'. From versions 1.2-*, the functions will be made defunct in 'spdep'.
Author: Roger Bivand [cre, aut] (<https://orcid.org/0000-0003-2392-6140>),
Gianfranco Piras [aut],
Luc Anselin [ctb],
Andrew Bernat [ctb],
Eric Blankmeyer [ctb],
Yongwan Chun [ctb],
Virgilio Gómez-Rubio [ctb],
Daniel Griffith [ctb],
Martin Gubri [ctb],
Rein Halbersma [ctb],
James LeSage [ctb],
Angela Li [ctb],
Jielai Ma [ctb],
Abhirup Mallik [ctb, trl],
Giovanni Millo [ctb],
Kelley Pace [ctb],
Pedro Peres-Neto [ctb],
Tobias Rüttenauer [ctb],
Mauricio Sarrias [ctb],
JuanTomas Sayago [ctb],
Michael Tiefelsdorf [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between spatialreg versions 1.1-5 dated 2019-12-01 and 1.1-8 dated 2021-05-03
DESCRIPTION | 12 MD5 | 86 - NAMESPACE | 244 ++--- NEWS.md |only R/AAA.R | 2 R/ME.R | 6 R/ML_models.R | 11 R/SLX_WX.R | 73 + R/SpatialFiltering.R | 6 R/impacts.R | 1399 +++++++++++++++++------------- R/jacobian_setup.R | 2 R/kpgm_new.R | 33 R/mcmcsamp.R | 4 R/mess.R | 28 R/predict.sarlm.R | 8 R/s2sls.R | 21 R/sarlm_functions.R | 99 +- R/sarlm_tests.R | 44 R/spBreg.R | 16 R/spautolm.R | 29 build/partial.rdb |only build/vignette.rds |binary inst/CITATION | 4 inst/doc/SpatialFiltering.Rmd | 21 inst/doc/SpatialFiltering.html | 1859 ++++++++++++++++++++++++++++++++++------ inst/doc/sids_models.R | 1 inst/doc/sids_models.Rmd | 8 inst/doc/sids_models.html | 1870 +++++++++++++++++++++++++++++++++++------ man/GMerrorsar.Rd | 28 man/MCMCsamp.Rd | 8 man/ME.Rd | 7 man/ML_models.Rd | 106 +- man/SET_MCMC.Rd | 34 man/SLX.Rd | 18 man/SpatialFiltering.Rd | 9 man/gstsls.Rd | 10 man/impacts.Rd | 62 - man/lagmess.Rd | 25 man/predict.sarlm.Rd | 28 man/sarlm_tests.Rd | 52 - man/set.mcOption.Rd | 3 man/spautolm.Rd | 25 man/stsls.Rd | 23 vignettes/SpatialFiltering.Rmd | 21 vignettes/sids_models.Rmd | 8 45 files changed, 4614 insertions(+), 1739 deletions(-)
Title: Annotate Mass over Charge Values with Databases and Formula
Prediction
Description: Provides parsing functionality for over 30 metabolomics databases, with most available without having to create an account on given websites.
Once parsed, calculates given adducts and isotope patterns and inserts into one big database which can be used to annotate unknown m/z values.
Furthermore, formulas can be predicted for a given m/z, and these can be matched to ChemSpider, PubChem, SUPERNATURAL II, KNApSAcK and ChemIDplus for further annotation.
Current databases available: HMDB, ChEBI, LMDB, BMDB, MCDB, ECMDB, Wikidata, mVOC, VMH, T3DB, Exposome Explorer, FooDB, MetaCyc (requires account), DrugBank (requires account), ReSPECT, MaConDa, Blood Exposome DB, KEGG, SMPDB, LIPID MAPS, MetaboLights, DimeDB, Phenol Explorer, MassBank, YMDB, PAMDB, ANPDB, Metabolomics Workbench, PharmGKB, Reactome, mVOC and STOFF.
Featured in the 'MetaboShiny' package (Wolthuis, J. (2019) <doi:10.1007/s11306-020-01717-8>).
Author: Joanna Wolthuis
Maintainer: Joanna Wolthuis <jcwolthuis93@gmail.com>
Diff between MetaDBparse versions 1.0.0 dated 2020-09-09 and 2.0.0 dated 2021-05-03
DESCRIPTION | 22 MD5 | 44 NAMESPACE | 38 R/oxy-biotransformer.R | 144 - R/oxy-db_base.R | 669 +++--- R/oxy-db_basics.R | 335 +-- R/oxy-db_extended.R | 1086 +++++----- R/oxy-db_parsers.R | 4529 +++++++++++++++++++++++--------------------- R/oxy-db_search.R | 684 +++--- R/oxy-from_formula.R | 1245 ++++++------ README.md | 4 man/build.BLOODEXPOSOME.Rd | 2 man/build.METACYC.Rd | 2 man/build.NANPDB.Rd | 10 man/build.PAMDB.Rd | 2 man/build.PHENOLEXPLORER.Rd | 2 man/build.REACTOME.Rd | 12 man/build.RMDB.Rd | 10 man/buildBaseDB.Rd | 7 man/buildExtDB.Rd | 8 man/doIsotopes.Rd | 4 man/getPredicted.Rd | 5 man/isotopes.Rd | 2 23 files changed, 4632 insertions(+), 4234 deletions(-)
Title: Locate Errors with Validation Rules
Description: Errors in data can be located and removed using validation rules from package 'validate'.
Author: Edwin de Jonge [aut, cre] (<https://orcid.org/0000-0002-6580-4718>),
Mark van der Loo [aut]
Maintainer: Edwin de Jonge <edwindjonge@gmail.com>
Diff between errorlocate versions 0.9.8 dated 2021-02-01 and 0.9.9 dated 2021-05-03
DESCRIPTION | 7 - MD5 | 38 +++-- NEWS.md | 11 + R/MipRules.R | 5 R/addnoise.R | 5 R/errorlocalizer.R | 15 +- R/expr_manip.R | 2 R/locate-errors.R | 2 R/mip_lpsolve.R | 12 - R/soft-rule.R | 14 +- build/vignette.rds |binary inst/doc/inspect_mip.R | 8 - inst/doc/inspect_mip.Rmd | 80 ++++++++--- inst/doc/inspect_mip.html | 244 +++++++++++++++++++----------------- inst/doc/introduction.R |only inst/doc/introduction.Rmd |only inst/doc/introduction.html |only man/locate_errors.Rd | 2 tests/testthat/test-locate_errors.R | 49 ++++++- tests/testthat/test-mip.R | 14 ++ vignettes/inspect_mip.Rmd | 80 ++++++++--- vignettes/introduction.Rmd |only 22 files changed, 385 insertions(+), 203 deletions(-)
Title: Relational Data Models
Description: Provides tools for working with multiple related
tables, stored as data frames or in a relational database. Multiple
tables (data and metadata) are stored in a compound object, which can
then be manipulated with a pipe-friendly syntax.
Author: Tobias Schieferdecker [aut],
Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>),
Darko Bergant [aut],
Katharina Brunner [ctb],
James Wondrasek [ctb],
energie360° AG [fnd],
cynkra GmbH [fnd, cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between dm versions 0.1.13 dated 2021-04-25 and 0.2.0 dated 2021-05-03
dm-0.1.13/dm/man/dplyr_db.Rd |only dm-0.2.0/dm/DESCRIPTION | 8 dm-0.2.0/dm/MD5 | 241 ++-- dm-0.2.0/dm/NAMESPACE | 9 dm-0.2.0/dm/NEWS.md | 19 dm-0.2.0/dm/R/add-tbl.R | 4 dm-0.2.0/dm/R/bind.R | 2 dm-0.2.0/dm/R/db-helpers.R | 107 + dm-0.2.0/dm/R/db-interface.R | 29 dm-0.2.0/dm/R/disambiguate.R | 15 dm-0.2.0/dm/R/dm-from-src.R | 8 dm-0.2.0/dm/R/dm.R | 198 +-- dm-0.2.0/dm/R/dplyr-src.R |only dm-0.2.0/dm/R/dplyr.R | 25 dm-0.2.0/dm/R/draw-dm.R | 14 dm-0.2.0/dm/R/error-helpers.R | 8 dm-0.2.0/dm/R/examine-constraints.R | 37 dm-0.2.0/dm/R/filter-helpers.R | 4 dm-0.2.0/dm/R/flatten.R | 2 dm-0.2.0/dm/R/foreign-keys.R | 137 +- dm-0.2.0/dm/R/format.R | 8 dm-0.2.0/dm/R/global.R | 3 dm-0.2.0/dm/R/import.R | 2 dm-0.2.0/dm/R/key-helpers.R | 44 dm-0.2.0/dm/R/keys.R | 37 dm-0.2.0/dm/R/learn.R | 6 dm-0.2.0/dm/R/nycflights13.R | 13 dm-0.2.0/dm/R/paste.R | 8 dm-0.2.0/dm/R/pkgdown.R | 5 dm-0.2.0/dm/R/primary-keys.R | 66 - dm-0.2.0/dm/R/rows-dm.R | 2 dm-0.2.0/dm/R/rows-truncate.R | 6 dm-0.2.0/dm/R/select-tbl.R | 14 dm-0.2.0/dm/R/test-dm.R | 9 dm-0.2.0/dm/R/zoom.R | 139 +- dm-0.2.0/dm/R/zzx-deprecated.R | 26 dm-0.2.0/dm/R/zzz.R | 11 dm-0.2.0/dm/inst/doc/dm.html | 12 dm-0.2.0/dm/inst/doc/howto-dm-copy.html | 26 dm-0.2.0/dm/inst/doc/howto-dm-db.Rmd | 8 dm-0.2.0/dm/inst/doc/howto-dm-db.html | 14 dm-0.2.0/dm/inst/doc/howto-dm-df.Rmd | 6 dm-0.2.0/dm/inst/doc/howto-dm-df.html | 68 - 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dm-0.2.0/dm/tests/testthat/test-foreign-keys.R | 35 dm-0.2.0/dm/tests/testthat/test-graph.R | 4 dm-0.2.0/dm/tests/testthat/test-key-helpers.R | 3 dm-0.2.0/dm/tests/testthat/test-learn.R | 51 dm-0.2.0/dm/tests/testthat/test-nest.R | 12 dm-0.2.0/dm/tests/testthat/test-primary-keys.R | 56 - dm-0.2.0/dm/tests/testthat/test-rows-db.R | 25 dm-0.2.0/dm/tests/testthat/test-rows-dm.R | 16 dm-0.2.0/dm/tests/testthat/test-schema.R | 5 dm-0.2.0/dm/tests/testthat/test-select-tbl.R | 16 dm-0.2.0/dm/tests/testthat/test-select.R | 60 - dm-0.2.0/dm/tests/testthat/test-tidyr.R | 45 dm-0.2.0/dm/tests/testthat/test-zoom.R | 26 dm-0.2.0/dm/tests/testthat/test-zzx-deprecated.R | 18 dm-0.2.0/dm/vignettes/howto-dm-db.Rmd | 8 dm-0.2.0/dm/vignettes/howto-dm-df.Rmd | 6 dm-0.2.0/dm/vignettes/howto-dm-theory.Rmd | 36 dm-0.2.0/dm/vignettes/tech-dm-class.Rmd | 1 129 files changed, 2865 insertions(+), 1797 deletions(-)
Title: Likelihood Analyses for Common Statistical Tests
Description: A collection of functions that calculate the log likelihood
(support) for a range of statistical tests. Where possible the likelihood
function and likelihood interval for the observed data are displayed. The
evidential approach used here is based on the book "Likelihood" by A.W.F.
Edwards (1992, ISBN-13 : 978-0801844430), "Statistical Evidence" by R.
Royall (1997, ISBN-13 : 978-0412044113), S.N. Goodman & R. Royall
(2011) <doi:10.2105/AJPH.78.12.1568>, "Understanding
Psychology as a Science" by Z. Dienes (2008, ISBN-13 : 978-0230542310),
S. Glover & P. Dixon <https://link.springer.com/article/10.3758/BF03196706>
and others. This package accompanies "Evidence-Based Statistics" by
P. Cahusac (2020, ISBN-13 : 978-1119549802).
Author: Peter Cahusac [aut, cre] (<https://orcid.org/0000-0003-4976-2834>)
Maintainer: Peter Cahusac <peteqsac@gmail.com>
Diff between likelihoodR versions 1.0.3 dated 2021-02-11 and 1.0.4 dated 2021-05-03
DESCRIPTION | 8 ++--- MD5 | 30 ++++++++++----------- NAMESPACE | 1 R/L_1way_ANOVA.R | 1 R/L_1way_RM_ANOVA.R | 1 R/L_1way_cat.R | 19 ++++++++++--- R/L_2way_Factorial_ANOVA.R | 60 ++++++++++++++++++++++-------------------- R/L_2way_cat.R | 40 ++++++++++++++++++---------- R/L_OR.R | 14 ++++++++- R/L_RR.R | 1 R/L_efficacy.R | 1 R/L_regress.R | 1 man/L_1way_cat.Rd | 7 ++++ man/L_2way_Factorial_ANOVA.Rd | 4 +- man/L_2way_cat.Rd | 10 ++++--- man/L_OR.Rd | 6 +++- 16 files changed, 131 insertions(+), 73 deletions(-)
Title: Harvest Metadata Using OAI-PMH Version 2.0
Description: Harvest metadata using the Open Archives Initiative Protocol for Metadata
Harvesting (OAI-PMH) version 2.0 (for more information, see
<http://www.openarchives.org/OAI/openarchivesprotocol.html>).
Author: Kurt Hornik [aut, cre] (<https://orcid.org/0000-0003-4198-9911>)
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between OAIHarvester versions 0.3-1 dated 2020-12-03 and 0.3-2 dated 2021-05-03
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- build/vignette.rds |binary inst/doc/oaih.R | 37 +++++++++++++++++++------------------ inst/doc/oaih.Rnw | 1 + inst/doc/oaih.pdf |binary man/serialize.Rd | 5 +++++ man/size.Rd | 5 +++++ man/transform.Rd | 5 +++++ man/verb.Rd | 6 ++++++ vignettes/oaih.Rnw | 1 + 11 files changed, 55 insertions(+), 31 deletions(-)
Title: Functions for Kriging and Point Pattern Analysis
Description: Functions for kriging and point pattern analysis.
Author: Brian Ripley [aut, cre, cph],
Roger Bivand [ctb],
William Venables [cph]
Maintainer: Brian Ripley <ripley@stats.ox.ac.uk>
Diff between spatial versions 7.3-13 dated 2021-01-24 and 7.3-14 dated 2021-05-03
DESCRIPTION | 8 ++++---- LICENCE.note | 8 ++++---- MD5 | 20 ++++++++++---------- inst/po/de/LC_MESSAGES/R-spatial.mo |binary inst/po/en@quot/LC_MESSAGES/R-spatial.mo |binary inst/po/fr/LC_MESSAGES/R-spatial.mo |binary inst/po/it/LC_MESSAGES/R-spatial.mo |binary inst/po/ko/LC_MESSAGES/R-spatial.mo |binary inst/po/pl/LC_MESSAGES/R-spatial.mo |binary po/R-fr.po | 23 ++++++++++++----------- po/R-spatial.pot | 4 ++-- 11 files changed, 32 insertions(+), 31 deletions(-)
Title: A System of Soil Classification for Making and Interpreting Soil
Surveys
Description: Taxonomic dictionaries, formative element lists, and functions related to the maintenance, development and application of U.S. Soil Taxonomy.
Data and functionality are based on official U.S. Department of Agriculture sources including the latest edition of the Keys to Soil Taxonomy. Descriptions and metadata are obtained from the National Soil Information System or Soil Survey Geographic databases. Other sources are referenced in the data documentation.
Provides tools for understanding and interacting with concepts in the U.S. Soil Taxonomic System. Most of the current utilities are for working with taxonomic concepts at the "higher" taxonomic levels: Order, Suborder, Great Group, and Subgroup.
Author: Dylan Beaudette [aut],
Andrew Brown [aut, cre]
Maintainer: Andrew Brown <andrew.g.brown@usda.gov>
Diff between SoilTaxonomy versions 0.1.2 dated 2021-04-30 and 0.1.3 dated 2021-05-03
DESCRIPTION | 6 ++--- MD5 | 32 ++++++++++++++++------------ NAMESPACE | 2 + NEWS.md | 5 ++++ R/explainST.R | 4 +++ R/getChildTaxa.R |only R/getParentTaxa.R | 13 +++++++++-- R/getTaxonAtLevel.R | 2 - R/higherTaxaLevels.R | 40 ++++++++++++++++++++++++++++++------ R/parseFamily.R | 2 - inst/doc/Family-level_Taxonomy.Rmd | 1 inst/doc/Family-level_Taxonomy.html | 9 +++++++- man/code_to_level.Rd |only man/getChildTaxa.Rd |only man/getParentTaxa.Rd | 12 +++++++--- man/getTaxonAtLevel.Rd | 3 -- tests/testthat/test-getChildTaxa.R |only tests/testthat/test-getParentTaxa.R | 3 ++ vignettes/Family-level_Taxonomy.Rmd | 1 19 files changed, 99 insertions(+), 36 deletions(-)
Title: Feed-Forward Neural Networks and Multinomial Log-Linear Models
Description: Software for feed-forward neural networks with a single
hidden layer, and for multinomial log-linear models.
Author: Brian Ripley [aut, cre, cph],
William Venables [cph]
Maintainer: Brian Ripley <ripley@stats.ox.ac.uk>
Diff between nnet versions 7.3-15 dated 2021-01-24 and 7.3-16 dated 2021-05-03
DESCRIPTION | 8 +++--- LICENCE.note | 8 +++--- MD5 | 20 ++++++++-------- inst/po/de/LC_MESSAGES/R-nnet.mo |binary inst/po/en@quot/LC_MESSAGES/R-nnet.mo |binary inst/po/fr/LC_MESSAGES/R-nnet.mo |binary inst/po/it/LC_MESSAGES/R-nnet.mo |binary inst/po/ko/LC_MESSAGES/R-nnet.mo |binary inst/po/pl/LC_MESSAGES/R-nnet.mo |binary po/R-fr.po | 42 ++++++++++++++++------------------ po/R-nnet.pot | 4 +-- 11 files changed, 40 insertions(+), 42 deletions(-)
Title: Support Functions and Datasets for Venables and Ripley's MASS
Description: Functions and datasets to support Venables and Ripley,
"Modern Applied Statistics with S" (4th edition, 2002).
Author: Brian Ripley [aut, cre, cph],
Bill Venables [ctb],
Douglas M. Bates [ctb],
Kurt Hornik [trl] (partial port ca 1998),
Albrecht Gebhardt [trl] (partial port ca 1998),
David Firth [ctb]
Maintainer: Brian Ripley <ripley@stats.ox.ac.uk>
Diff between MASS versions 7.3-53.1 dated 2021-02-12 and 7.3-54 dated 2021-05-03
DESCRIPTION | 12 - LICENCE.note | 8 MD5 | 14 - build/partial.rdb |binary inst/po/en@quot/LC_MESSAGES/R-MASS.mo |binary inst/po/fr/LC_MESSAGES/R-MASS.mo |binary po/R-MASS.pot | 4 po/R-fr.po | 288 +++++++++++++++------------------- 8 files changed, 154 insertions(+), 172 deletions(-)
Title: The Simplest Solution to Version-Control for CRAN Packages
Description: Make R scripts that rely on packages reproducible, by ensuring that
every time a given script is run, the same version of the used packages are
loaded (instead of whichever version the user running the script happens to
have installed). This is achieved by using the new command
groundhog.library() instead of the base command library(), and including a
date in the call. The date is used to call on the same version of the
package every time (the most recent version available on CRAN at that date).
Author: Uri Simonsohn [aut, cre] (<https://orcid.org/0000-0002-8601-7211>),
Hugo Gruson [ctb, aut] (<https://orcid.org/0000-0002-4094-1476>)
Maintainer: Uri Simonsohn <urisohn@gmail.com>
Diff between groundhog versions 1.3.2 dated 2021-03-12 and 1.4.0 dated 2021-05-03
groundhog-1.3.2/groundhog/R/check.mismatch.R.R |only groundhog-1.4.0/groundhog/DESCRIPTION | 9 groundhog-1.4.0/groundhog/MD5 | 43 + groundhog-1.4.0/groundhog/NAMESPACE | 1 groundhog-1.4.0/groundhog/R/check.snowball.conflict.R | 44 +- groundhog-1.4.0/groundhog/R/get.active.R | 16 groundhog-1.4.0/groundhog/R/get.date.for.install.binary.R | 31 - groundhog-1.4.0/groundhog/R/get.dependencies.R | 12 groundhog-1.4.0/groundhog/R/get.groundhog.folder.R | 3 groundhog-1.4.0/groundhog/R/get.pkg_search_paths.R | 15 groundhog-1.4.0/groundhog/R/get.snowball.R | 31 - groundhog-1.4.0/groundhog/R/get.version.R | 14 groundhog-1.4.0/groundhog/R/groundhog.library.R | 304 +++++++++----- groundhog-1.4.0/groundhog/R/install.snowball.R | 20 groundhog-1.4.0/groundhog/R/meta.groundhog.R |only groundhog-1.4.0/groundhog/R/r.version.check.R | 26 - groundhog-1.4.0/groundhog/R/remove.conflict.R | 4 groundhog-1.4.0/groundhog/R/utils.R | 29 + groundhog-1.4.0/groundhog/R/zzz.R | 7 groundhog-1.4.0/groundhog/inst/cran.times.rds |binary groundhog-1.4.0/groundhog/inst/cran.toc.rds |binary groundhog-1.4.0/groundhog/inst/missing.mran.dates.rds |binary groundhog-1.4.0/groundhog/man/groundhog.library.Rd | 33 + groundhog-1.4.0/groundhog/man/meta.groundhog.Rd |only 24 files changed, 436 insertions(+), 206 deletions(-)
Title: Functions for Classification
Description: Various functions for classification, including k-nearest
neighbour, Learning Vector Quantization and Self-Organizing Maps.
Author: Brian Ripley [aut, cre, cph],
William Venables [cph]
Maintainer: Brian Ripley <ripley@stats.ox.ac.uk>
Diff between class versions 7.3-18 dated 2021-01-24 and 7.3-19 dated 2021-05-03
DESCRIPTION | 8 ++++---- LICENCE.note | 8 ++++---- MD5 | 20 ++++++++++---------- inst/po/de/LC_MESSAGES/R-class.mo |binary inst/po/en@quot/LC_MESSAGES/R-class.mo |binary inst/po/fr/LC_MESSAGES/R-class.mo |binary inst/po/it/LC_MESSAGES/R-class.mo |binary inst/po/ko/LC_MESSAGES/R-class.mo |binary inst/po/pl/LC_MESSAGES/R-class.mo |binary po/R-class.pot | 4 ++-- po/R-fr.po | 26 +++++++++++++------------- 11 files changed, 33 insertions(+), 33 deletions(-)
Title: Bootstrap Functions (Originally by Angelo Canty for S)
Description: Functions and datasets for bootstrapping from the
book "Bootstrap Methods and Their Application" by A. C. Davison and
D. V. Hinkley (1997, CUP), originally written by Angelo Canty for S.
Author: Angelo Canty [aut],
Brian Ripley [aut, trl, cre] (author of parallel support)
Maintainer: Brian Ripley <ripley@stats.ox.ac.uk>
Diff between boot versions 1.3-27 dated 2021-02-12 and 1.3-28 dated 2021-05-03
ChangeLog | 4 ++++ DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ inst/po/en@quot/LC_MESSAGES/R-boot.mo |binary inst/po/fr/LC_MESSAGES/R-boot.mo |binary po/R-boot.pot | 4 ++-- po/R-fr.po | 22 +++++++++++----------- 7 files changed, 27 insertions(+), 23 deletions(-)
Title: Bayesian Global Vector Autoregressions
Description: Estimation of Bayesian Global Vector Autoregressions (BGVAR) with different prior setups and the possibility to introduce stochastic volatility. Built-in priors include the Minnesota, the stochastic search variable selection and Normal-Gamma (NG) prior. For a reference see also Crespo Cuaresma, J., Feldkircher, M. and F. Huber (2016) "Forecasting with Global Vector Autoregressive Models: a Bayesian Approach", Journal of Applied Econometrics, Vol. 31(7), pp. 1371-1391 <doi:10.1002/jae.2504>. Post-processing functions allow for doing predictions, structurally identify the model with short-run or sign-restrictions and compute impulse response functions, historical decompositions and forecast error variance decompositions. Plotting functions are also available.
Author: Maximilian Boeck [aut, cre] (<https://orcid.org/0000-0001-6024-8305>),
Martin Feldkircher [aut] (<https://orcid.org/0000-0002-5511-9215>),
Florian Huber [aut] (<https://orcid.org/0000-0002-2896-7921>)
Maintainer: Maximilian Boeck <maximilian.boeck@wu.ac.at>
Diff between BGVAR versions 2.1.5 dated 2020-11-15 and 2.2.0 dated 2021-05-03
BGVAR-2.1.5/BGVAR/R/bgvar.R |only BGVAR-2.1.5/BGVAR/man/cond.predict.Rd |only BGVAR-2.1.5/BGVAR/man/irfcf.Rd |only BGVAR-2.2.0/BGVAR/DESCRIPTION | 23 BGVAR-2.2.0/BGVAR/MD5 | 106 BGVAR-2.2.0/BGVAR/NAMESPACE | 14 BGVAR-2.2.0/BGVAR/NEWS | 11 BGVAR-2.2.0/BGVAR/R/BGVAR.R |only BGVAR-2.2.0/BGVAR/R/RcppExports.R | 20 BGVAR-2.2.0/BGVAR/R/bgvar-package.R | 86 BGVAR-2.2.0/BGVAR/R/fevd.R | 64 BGVAR-2.2.0/BGVAR/R/hd.R | 40 BGVAR-2.2.0/BGVAR/R/helpers.R | 4 BGVAR-2.2.0/BGVAR/R/irf.R | 1239 +++----- BGVAR-2.2.0/BGVAR/R/plot.R | 527 ++- BGVAR-2.2.0/BGVAR/R/predict.R | 348 -- BGVAR-2.2.0/BGVAR/R/utils.R | 597 +-- BGVAR-2.2.0/BGVAR/R/zzz.R | 175 + BGVAR-2.2.0/BGVAR/data/pesaranData.rda |binary BGVAR-2.2.0/BGVAR/inst/doc/examples.R | 468 +-- BGVAR-2.2.0/BGVAR/inst/doc/examples.Rmd | 2413 +++++++-------- BGVAR-2.2.0/BGVAR/inst/doc/examples.html | 1143 +++---- BGVAR-2.2.0/BGVAR/inst/include |only BGVAR-2.2.0/BGVAR/man/BGVAR-package.Rd |only BGVAR-2.2.0/BGVAR/man/add_shockinfo.Rd |only BGVAR-2.2.0/BGVAR/man/bgvar.Rd | 51 BGVAR-2.2.0/BGVAR/man/coef.Rd | 2 BGVAR-2.2.0/BGVAR/man/eerData.Rd | 4 BGVAR-2.2.0/BGVAR/man/eerDatasmall.Rd | 4 BGVAR-2.2.0/BGVAR/man/eerDataspf.Rd | 10 BGVAR-2.2.0/BGVAR/man/fevd.Rd | 30 BGVAR-2.2.0/BGVAR/man/fitted.Rd | 2 BGVAR-2.2.0/BGVAR/man/get_shockinfo.Rd |only BGVAR-2.2.0/BGVAR/man/gfevd.Rd | 6 BGVAR-2.2.0/BGVAR/man/hd.Rd | 19 BGVAR-2.2.0/BGVAR/man/irf.Rd | 284 - BGVAR-2.2.0/BGVAR/man/logLik.Rd | 2 BGVAR-2.2.0/BGVAR/man/lps.Rd | 2 BGVAR-2.2.0/BGVAR/man/monthlyData.Rd | 4 BGVAR-2.2.0/BGVAR/man/pesaranData.Rd | 64 BGVAR-2.2.0/BGVAR/man/plot.Rd | 46 BGVAR-2.2.0/BGVAR/man/predict.Rd | 42 BGVAR-2.2.0/BGVAR/man/residuals.Rd | 2 BGVAR-2.2.0/BGVAR/man/rmse.Rd | 2 BGVAR-2.2.0/BGVAR/man/summary.Rd | 2 BGVAR-2.2.0/BGVAR/man/vcov.Rd | 2 BGVAR-2.2.0/BGVAR/src/BVAR_linear.cpp | 38 BGVAR-2.2.0/BGVAR/src/Makevars | 3 BGVAR-2.2.0/BGVAR/src/Makevars.win | 4 BGVAR-2.2.0/BGVAR/src/RcppExports.cpp | 85 BGVAR-2.2.0/BGVAR/src/do_rgig1.cpp | 10 BGVAR-2.2.0/BGVAR/src/do_rgig1.h | 1 BGVAR-2.2.0/BGVAR/src/helper.cpp | 29 BGVAR-2.2.0/BGVAR/src/helper.h | 4 BGVAR-2.2.0/BGVAR/src/irf.cpp |only BGVAR-2.2.0/BGVAR/src/sample_parameters.cpp | 4 BGVAR-2.2.0/BGVAR/vignettes/examples.Rmd | 2413 +++++++-------- BGVAR-2.2.0/BGVAR/vignettes/fullbib.bib | 4249 ++++++++++++++++++++-------- 58 files changed, 8223 insertions(+), 6475 deletions(-)
Title: Breaks for Additive Season and Trend
Description: Decomposition of time series into
trend, seasonal, and remainder components with methods for detecting and
characterizing abrupt changes within the trend and seasonal components. 'BFAST'
can be used to analyze different types of satellite image time series and can
be applied to other disciplines dealing with seasonal or non-seasonal time
series, such as hydrology, climatology, and econometrics. The algorithm can be
extended to label detected changes with information on the parameters of the
fitted piecewise linear models. 'BFAST' monitoring functionality is described
in Verbesselt et al. (2010) <doi:10.1016/j.rse.2009.08.014>. 'BFAST monitor'
provides functionality to detect disturbance in near real-time based on 'BFAST'-
type models, and is described in Verbesselt et al. (2012) <doi:10.1016/j.rse.2012.02.022>.
'BFAST Lite' approach is a flexible approach that handles missing data
without interpolation, and will be described in an upcoming paper.
Furthermore, different models can now be used to fit the
time series data and detect structural changes (breaks).
Author: Jan Verbesselt [aut],
Dainius Masiliunas [aut, cre] (<https://orcid.org/0000-0001-5654-1277>),
Achim Zeileis [aut],
Rob Hyndman [ctb],
Marius Appel [ctb],
Martin Jung [ctb],
Andrei Mirt [ctb] (<https://orcid.org/0000-0003-3654-2090>),
Paulo Negri Bernardino [ctb]
Maintainer: Dainius Masiliunas <pastas4@gmail.com>
Diff between bfast versions 1.5.7 dated 2014-08-27 and 1.6.0 dated 2021-05-03
bfast-1.5.7/bfast/man/create16dayts.Rd |only bfast-1.6.0/bfast/DESCRIPTION | 79 ++-- bfast-1.6.0/bfast/MD5 | 98 +++-- bfast-1.6.0/bfast/NAMESPACE | 85 ++-- bfast-1.6.0/bfast/NEWS | 44 ++ bfast-1.6.0/bfast/R/RcppExports.R |only bfast-1.6.0/bfast/R/bfast-deprecated.R |only bfast-1.6.0/bfast/R/bfast-package.R |only bfast-1.6.0/bfast/R/bfast.R | 393 +++++++++++++-------- bfast-1.6.0/bfast/R/bfast01.R | 225 ++++++++++-- bfast-1.6.0/bfast/R/bfast01classify.R | 295 ++++++++++++--- bfast-1.6.0/bfast/R/bfastlite.R |only bfast-1.6.0/bfast/R/bfastmonitor.R | 334 ++++++++++++++++- bfast-1.6.0/bfast/R/bfastpp.R | 105 ++++- bfast-1.6.0/bfast/R/bfastts.R | 230 ++++++++++-- bfast-1.6.0/bfast/R/create16dayts.R | 32 + bfast-1.6.0/bfast/R/history_break.R | 15 bfast-1.6.0/bfast/R/history_roc.R | 34 + bfast-1.6.0/bfast/R/plot.bfast.R | 41 ++ bfast-1.6.0/bfast/R/plot.bfastmonitor.R | 14 bfast-1.6.0/bfast/R/print.bfast.R | 2 bfast-1.6.0/bfast/R/print.bfastmonitor.R | 4 bfast-1.6.0/bfast/R/seasonal.R | 5 bfast-1.6.0/bfast/R/zzz.R |only bfast-1.6.0/bfast/build |only bfast-1.6.0/bfast/data/harvest.rda |binary bfast-1.6.0/bfast/data/ndvi.rda |binary bfast-1.6.0/bfast/data/simts.rda |binary bfast-1.6.0/bfast/data/som.rda |binary bfast-1.6.0/bfast/data/somaliadat.rda |binary bfast-1.6.0/bfast/inst/CITATION | 36 - bfast-1.6.0/bfast/inst/REFERENCES.bib |only bfast-1.6.0/bfast/inst/extdata/modisraster.grd | 51 +- bfast-1.6.0/bfast/inst/reports |only bfast-1.6.0/bfast/man/bfast-deprecated.Rd |only bfast-1.6.0/bfast/man/bfast-package.Rd | 96 ++--- bfast-1.6.0/bfast/man/bfast.Rd | 262 +++++++------- bfast-1.6.0/bfast/man/bfast01.Rd | 198 ++++++---- bfast-1.6.0/bfast/man/bfast01classify.Rd | 102 ++--- bfast-1.6.0/bfast/man/bfastlite.Rd |only bfast-1.6.0/bfast/man/bfastmonitor.Rd | 291 ++++++++------- bfast-1.6.0/bfast/man/bfastpp.Rd | 164 +++++--- bfast-1.6.0/bfast/man/bfastts.Rd | 75 ++-- bfast-1.6.0/bfast/man/create16dayts-deprecated.Rd |only bfast-1.6.0/bfast/man/dates.Rd | 23 - bfast-1.6.0/bfast/man/dot-bfast_cpp_closestfrom.Rd |only bfast-1.6.0/bfast/man/harvest.Rd | 24 - bfast-1.6.0/bfast/man/modisraster.Rd | 19 - bfast-1.6.0/bfast/man/ndvi.Rd | 13 bfast-1.6.0/bfast/man/plot.bfast.Rd | 79 ++-- bfast-1.6.0/bfast/man/plot.bfastlite.Rd |only bfast-1.6.0/bfast/man/setoptions.Rd |only bfast-1.6.0/bfast/man/simts.Rd | 26 - bfast-1.6.0/bfast/man/som.Rd | 18 bfast-1.6.0/bfast/src |only bfast-1.6.0/bfast/tests |only 56 files changed, 2417 insertions(+), 1095 deletions(-)
More information about TrtCombo.FactorialExp.SR at CRAN
Permanent link
Title: Necessary Condition Analysis
Description: Performs a Necessary Condition Analysis (NCA). (Dul, J. 2016. Necessary Condition Analysis (NCA). ''Logic and Methodology of 'Necessary but not Sufficient' causality." Organizational Research Methods 19(1), 10-52,
<https://journals.sagepub.com/doi/full/10.1177/1094428115584005>).
NCA identifies necessary (but not sufficient) conditions in datasets, where x causes (e.g. precedes) y. Instead of drawing a regression line ''through the middle of the data'' in an xy-plot, NCA draws the ceiling line. The ceiling line y = f(x) separates the area with observations from the area without observations.
(Nearly) all observations are below the ceiling line: y <= f(x). The empty zone is in the upper left hand corner of the xy-plot (with the convention that the x-axis is ''horizontal'' and the y-axis is ''vertical'' and that values increase ''upwards'' and ''to the right''). The ceiling line is a (piecewise) linear non-decreasing line: a linear step function or a straight line. It indicates which level of x (e.g. an effort or input) is necessary but not sufficient for a (desired) level of y (e.g. good performance or output). A quick start guide for using this package can be found here: <https://repub.eur.nl/pub/78323/> or <https://papers.ssrn.com/sol3/papers.cfm?abstract_id=2624981>.
Author: Jan Dul <jdul@rsm.nl>
Maintainer: Govert Buijs <buijs@rsm.nl>
Diff between NCA versions 3.1.0 dated 2021-03-02 and 3.1.1 dated 2021-05-03
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/p_bottleneck.R | 32 ++++++++++++++++---------------- man/NCA-package.Rd | 4 ++-- 4 files changed, 25 insertions(+), 25 deletions(-)
More information about JCRImpactFactor at CRAN
Permanent link
Title: Generate Synthetic Data from Statistical Models
Description: Generate synthetic time series from commonly used statistical models, including linear, nonlinear and chaotic systems. Applications to testing methods can be found in Jiang, Z., Sharma, A., & Johnson, F. (2019) <doi:10.1016/j.advwatres.2019.103430> and Jiang, Z., Sharma, A., & Johnson, F. (2020) <doi:10.1029/2019WR026962> associated with an open-source tool by Jiang, Z., Rashid, M. M., Johnson, F., & Sharma, A. (2020) <doi:10.1016/j.envsoft.2020.104907>.
Author: Ze Jiang [aut, cre] (<https://orcid.org/0000-0002-3472-0829>)
Maintainer: Ze Jiang <ze.jiang@unsw.edu.au>
Diff between synthesis versions 1.2.1 dated 2021-04-02 and 1.2.2 dated 2021-05-03
DESCRIPTION | 6 - MD5 | 30 ++++-- NAMESPACE | 7 + NEWS.md | 6 + R/data_gen_BM.R |only R/data_gen_Error.R |only R/data_gen_SW.R |only R/data_gen_WQ.R |only README.md | 20 ++++ build/vignette.rds |binary inst/doc/synthesis.R | 45 +++++++++- inst/doc/synthesis.Rmd | 71 +++++++++++++++- inst/doc/synthesis.html | 212 ++++++++++++++++++++++++++++++++++-------------- inst/synthesis.bib | 29 ++++++ man/data.gen.BUWO.Rd |only man/data.gen.SW.Rd |only man/data.gen.affine.Rd |only man/data.gen.bm.Rd |only man/data.gen.fbm.Rd |only man/data.gen.gbm.Rd |only vignettes/synthesis.Rmd | 71 +++++++++++++++- 21 files changed, 418 insertions(+), 79 deletions(-)
Title: Ratio Benchmarking for Multivariate Small Area Estimation
Description: Implements multivariate ratio benchmarking small area estimation. This package provides ratio benchmarking estimation for univariate and multivariate small area estimation and its MSE. In fact, MSE estimators for ratio benchmark are not readily available, so resampling method that called parametric bootstrap is applied. The ratio benchmark model and parametric bootstrap in this package are based on the model proposed in small area estimation. J.N.K Rao and Isabel Molina (2015, ISBN: 978-1-118-73578-7).
Author: Zenda Oka Briantiko [aut, cre],
Azka Ubaidillah [aut]
Maintainer: Zenda Oka Briantiko <221710087@stis.ac.id>
Diff between msaeRB versions 0.1.4 dated 2021-03-30 and 0.1.5 dated 2021-05-03
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/est_msaeRB.R | 7 +++++-- R/est_saeRB.R | 7 +++++-- man/est_msaeRB.Rd | 2 +- man/est_saeRB.Rd | 2 +- 6 files changed, 20 insertions(+), 14 deletions(-)
Title: Discriminant Analysis with Additional Information
Description: In applications it is usual that some additional information is available. This package dawai (an acronym for Discriminant Analysis With Additional Information) performs linear and quadratic discriminant analysis with additional information expressed as inequality restrictions among the populations means. It also computes several estimations of the true error rate.
Author: David Conde, Miguel A. Fernandez, Bonifacio Salvador
Maintainer: David Conde <dconde@eio.uva.es>
Diff between dawai versions 1.2.3 dated 2018-01-16 and 1.2.5 dated 2021-05-03
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- NAMESPACE | 2 +- R/rlda.R | 2 +- R/rqda.R | 2 +- build/vignette.rds |binary inst/CITATION | 4 ++-- inst/doc/dawai.pdf |binary man/Vehicle2.Rd | 3 +-- man/dawai-package.Rd | 4 ++-- man/err.est.rlda.Rd | 2 +- man/err.est.rqda.Rd | 2 +- 12 files changed, 25 insertions(+), 26 deletions(-)
Title: Geographic Data Analysis and Modeling
Description: Reading, writing, manipulating, analyzing and modeling of spatial data. The package implements basic and high-level functions for raster data and for vector data operations such as intersections. See the manual and tutorials on <https://rspatial.org/> to get started.
Author: Robert J. Hijmans [cre, aut] (<https://orcid.org/0000-0001-5872-2872>),
Jacob van Etten [ctb],
Michael Sumner [ctb],
Joe Cheng [ctb],
Dan Baston [ctb],
Andrew Bevan [ctb],
Roger Bivand [ctb],
Lorenzo Busetto [ctb],
Mort Canty [ctb],
Ben Fasoli [ctb],
David Forrest [ctb],
Aniruddha Ghosh [ctb],
Duncan Golicher [ctb],
Josh Gray [ctb],
Jonathan A. Greenberg [ctb],
Paul Hiemstra [ctb],
Kassel Hingee [ctb],
Institute for Mathematics Applied Geosciences [cph],
Charles Karney [ctb],
Matteo Mattiuzzi [ctb],
Steven Mosher [ctb],
Babak Naimi [ctb],
Jakub Nowosad [ctb],
Edzer Pebesma [ctb],
Oscar Perpinan Lamigueiro [ctb],
Etienne B. Racine [ctb],
Barry Rowlingson [ctb],
Ashton Shortridge [ctb],
Bill Venables [ctb],
Rafael Wueest [ctb]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between raster versions 3.4-5 dated 2020-11-14 and 3.4-10 dated 2021-05-03
raster-3.4-10/raster/DESCRIPTION | 12 +- raster-3.4-10/raster/MD5 | 119 +++++++++++------------ raster-3.4-10/raster/NAMESPACE | 6 - raster-3.4-10/raster/NEWS | 4 raster-3.4-10/raster/R/AAgeneric_functions.R | 29 ++++- raster-3.4-10/raster/R/Geary.R | 9 - raster-3.4-10/raster/R/RGB.R | 10 - raster-3.4-10/raster/R/aggregate_sp.R | 5 raster-3.4-10/raster/R/brick.R | 5 raster-3.4-10/raster/R/buffer.R | 3 raster-3.4-10/raster/R/click.R | 6 - raster-3.4-10/raster/R/corLocal.R | 6 - raster-3.4-10/raster/R/coverPolygons.R | 3 raster-3.4-10/raster/R/cropSpatial.R | 4 raster-3.4-10/raster/R/crosstab.R | 4 raster-3.4-10/raster/R/cv.R | 6 - raster-3.4-10/raster/R/direction.R | 6 - raster-3.4-10/raster/R/distance.R | 4 raster-3.4-10/raster/R/erase.R | 6 - raster-3.4-10/raster/R/extractPoints.R | 1 raster-3.4-10/raster/R/extractPoints_sp.R | 2 raster-3.4-10/raster/R/flip.R | 4 raster-3.4-10/raster/R/getData.R | 2 raster-3.4-10/raster/R/intersect.R | 2 raster-3.4-10/raster/R/intersect_sp.R | 49 +++++++-- raster-3.4-10/raster/R/layerize.R | 4 raster-3.4-10/raster/R/metadata.R | 8 - raster-3.4-10/raster/R/moran.R | 2 raster-3.4-10/raster/R/netCDFtoRasterCD.R | 7 + raster-3.4-10/raster/R/netCDFutil.R | 9 - raster-3.4-10/raster/R/projectRaster.R | 2 raster-3.4-10/raster/R/raster.R | 11 +- raster-3.4-10/raster/R/rasterFromGDAL.R | 11 +- raster-3.4-10/raster/R/rasterizeLines.R | 2 raster-3.4-10/raster/R/rotate.R | 6 + raster-3.4-10/raster/R/select.R | 6 - raster-3.4-10/raster/R/show.R | 4 raster-3.4-10/raster/R/spplot.R | 3 raster-3.4-10/raster/R/stack.R | 5 raster-3.4-10/raster/R/summary.R | 3 raster-3.4-10/raster/R/symdif.R | 2 raster-3.4-10/raster/R/union_sp.R | 4 raster-3.4-10/raster/R/weighted.mean.R | 5 raster-3.4-10/raster/R/whiches.max.R | 11 -- raster-3.4-10/raster/R/writeRaster.R | 4 raster-3.4-10/raster/R/xyValuesBuffer.R | 2 raster-3.4-10/raster/build |only raster-3.4-10/raster/man/distanceFromPoints.Rd | 2 raster-3.4-10/raster/man/erase.Rd | 2 raster-3.4-10/raster/man/factor.Rd | 4 raster-3.4-10/raster/man/flip.Rd | 7 - raster-3.4-10/raster/man/flowpath.Rd | 1 raster-3.4-10/raster/man/getData.Rd | 8 - raster-3.4-10/raster/man/metadata.Rd | 5 raster-3.4-10/raster/man/projectRaster.Rd | 8 + raster-3.4-10/raster/man/raster.Rd | 21 ---- raster-3.4-10/raster/man/symdif.Rd | 2 raster-3.4-10/raster/src/distance.cpp | 129 +++++++++++++++++++++++++ raster-3.4-10/raster/src/distance.h | 9 + raster-3.4-10/raster/src/raster_distance.cpp | 1 raster-3.4-5/raster/src/area.cpp |only raster-3.4-5/raster/src/area.h |only 62 files changed, 388 insertions(+), 229 deletions(-)
Title: Helper Functions for Use with "ProjectTemplate"
Description: Utility functions produced specifically for (but not limited to)
working with 'ProjectTemplate' data pipelines. This package helps to quickly
create and manage sequentially numbered scripts, quickly set up logging with
'log4r' and functions to help debug and monitor procedures.
Author: Rich Leyshon [aut, cph, cre],
Andrew Simmons [ctb]
Maintainer: Rich Leyshon <leyshonrr@hotmail.co.uk>
Diff between ptspotter versions 1.0 dated 2021-04-21 and 1.0.1 dated 2021-05-03
DESCRIPTION | 13 +++++++------ MD5 | 29 +++++++++++++++++++---------- NAMESPACE | 5 +++++ R/adj_file_nos.R | 36 ++++++++++++++++++++++-------------- R/log_enable.R | 2 +- R/log_file_ops.R | 2 +- R/memory_report.R | 7 ++++--- R/seq_file_ops.R | 10 ++++------ R/wrap_up.R | 5 ++--- build |only inst |only man/adj_file_nos.Rd | 4 ++-- tests/testthat/test-adj_file_nos.R | 13 ++++++++++++- vignettes |only 14 files changed, 79 insertions(+), 47 deletions(-)
Title: Required 'libphonenumber' jars for the 'dialr' Package
Description: Collects 'libphonenumber' jars required for the
'dialr' package.
Author: Danny Smith [aut, cre],
Google Inc. [ctb, cph] (libphonenumber),
Vonage Holdings Corp. [ctb, cph] (libphonenumber),
Ian Galpin [ctb, cph] (libphonenumber),
Ben Gertzfield [ctb, cph] (libphonenumber)
Maintainer: Danny Smith <danny@gorcha.org>
Diff between dialrjars versions 8.12.20 dated 2021-03-28 and 8.12.22 dated 2021-05-03
dialrjars-8.12.20/dialrjars/inst/java/carrier-1.146.jar |only dialrjars-8.12.20/dialrjars/inst/java/geocoder-2.156.jar |only dialrjars-8.12.20/dialrjars/inst/java/libphonenumber-8.12.20.jar |only dialrjars-8.12.20/dialrjars/inst/java/prefixmapper-2.156.jar |only dialrjars-8.12.22/dialrjars/DESCRIPTION | 6 +-- dialrjars-8.12.22/dialrjars/MD5 | 12 +++--- dialrjars-8.12.22/dialrjars/NEWS.md | 20 ++++++++++ dialrjars-8.12.22/dialrjars/inst/java/carrier-1.148.jar |only dialrjars-8.12.22/dialrjars/inst/java/geocoder-2.158.jar |only dialrjars-8.12.22/dialrjars/inst/java/libphonenumber-8.12.22.jar |only dialrjars-8.12.22/dialrjars/inst/java/prefixmapper-2.158.jar |only 11 files changed, 29 insertions(+), 9 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-18 1.0.0
Title: Render SVG Images into PDF, PNG, PostScript, or Bitmap Arrays
Description: Renders vector-based svg images into high-quality custom-size bitmap
arrays using 'librsvg2'. The resulting bitmap can be written to e.g. png, jpeg
or webp format. In addition, the package can convert images directly to various
formats such as pdf or postscript.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between rsvg versions 2.1.1 dated 2021-04-21 and 2.1.2 dated 2021-05-03
DESCRIPTION | 7 ++++--- MD5 | 17 +++++++++++------ NAMESPACE | 2 ++ NEWS | 7 +++++++ R/version.R |only inst/WORDLIST | 11 +++++++++++ man/librsvg_version.Rd |only src/Makevars.ucrt |only src/Makevars.win | 12 +++++++----- src/rsvg.c | 6 +++++- tests/engine.R |only tests/engine.Rout.save |only 12 files changed, 47 insertions(+), 15 deletions(-)
Title: Interface to 'Python'
Description: Interface to 'Python' modules, classes, and functions. When calling
into 'Python', R data types are automatically converted to their equivalent 'Python'
types. When values are returned from 'Python' to R they are converted back to R
types. Compatible with all versions of 'Python' >= 2.7.
Author: Kevin Ushey [aut, cre],
JJ Allaire [aut],
RStudio [cph, fnd],
Yuan Tang [aut, cph] (<https://orcid.org/0000-0001-5243-233X>),
Dirk Eddelbuettel [ctb, cph],
Bryan Lewis [ctb, cph],
Sigrid Keydana [ctb],
Ryan Hafen [ctb, cph],
Marcus Geelnard [ctb, cph] (TinyThread library,
http://tinythreadpp.bitsnbites.eu/)
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between reticulate versions 1.19 dated 2021-04-21 and 1.20 dated 2021-05-03
reticulate-1.19/reticulate/tests/testthat/helper-init.R |only reticulate-1.19/reticulate/tests/testthat/helper-skip.R |only reticulate-1.19/reticulate/tests/testthat/resources/altair-example.pdf |only reticulate-1.19/reticulate/tests/testthat/resources/plotly-example.pdf |only reticulate-1.20/reticulate/DESCRIPTION | 6 +- reticulate-1.20/reticulate/MD5 | 21 ++++------ reticulate-1.20/reticulate/NAMESPACE | 2 reticulate-1.20/reticulate/NEWS.md | 4 + reticulate-1.20/reticulate/R/imports.R | 1 reticulate-1.20/reticulate/R/knitr-engine.R | 6 -- reticulate-1.20/reticulate/build/vignette.rds |binary reticulate-1.20/reticulate/tests/testthat.R | 18 +++++++- reticulate-1.20/reticulate/tests/testthat/test-aaa.R | 5 -- reticulate-1.20/reticulate/tools |only 14 files changed, 35 insertions(+), 28 deletions(-)
Title: Parallel Programming Tools for 'Rcpp'
Description: High level functions for parallel programming with 'Rcpp'.
For example, the 'parallelFor()' function can be used to convert the work of
a standard serial "for" loop into a parallel one and the 'parallelReduce()'
function can be used for accumulating aggregate or other values.
Author: JJ Allaire [aut],
Romain Francois [aut, cph],
Kevin Ushey [aut, cre],
Gregory Vandenbrouck [aut],
Marcus Geelnard [aut, cph] (TinyThread library,
https://tinythreadpp.bitsnbites.eu/),
Hamada S. Badr [ctb] (<https://orcid.org/0000-0002-9808-2344>),
RStudio [cph],
Intel [aut, cph] (Intel TBB library,
https://www.threadingbuildingblocks.org/),
Microsoft [cph]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between RcppParallel versions 5.1.2 dated 2021-04-15 and 5.1.3 dated 2021-05-03
RcppParallel-5.1.2/RcppParallel/R/hooks.R |only RcppParallel-5.1.3/RcppParallel/DESCRIPTION | 6 +-- RcppParallel-5.1.3/RcppParallel/MD5 | 20 ++++++------ RcppParallel-5.1.3/RcppParallel/NEWS.md | 10 ++++++ RcppParallel-5.1.3/RcppParallel/R/zzz.R |only RcppParallel-5.1.3/RcppParallel/man/RcppParallel-package.Rd | 6 +-- RcppParallel-5.1.3/RcppParallel/man/flags.Rd | 18 +++------- RcppParallel-5.1.3/RcppParallel/man/setThreadOptions.Rd | 14 ++++---- RcppParallel-5.1.3/RcppParallel/man/tbbLibraryPath.Rd | 2 - RcppParallel-5.1.3/RcppParallel/src/Makevars.in | 6 +-- RcppParallel-5.1.3/RcppParallel/src/install.libs.R | 10 +++++- RcppParallel-5.1.3/RcppParallel/tools/config/cleanup.R | 5 ++- 12 files changed, 56 insertions(+), 41 deletions(-)
Title: Pixar Films and Achievements
Description: Data about Disney Pixar films provided by Wikipedia. This
package contains data about the films, the people involved, and their
awards.
Author: Eric Leung [aut, cre] (<https://orcid.org/0000-0002-8724-1872>)
Maintainer: Eric Leung <erictleung@outlook.com>
Diff between pixarfilms versions 0.0.1 dated 2021-03-12 and 0.2.0 dated 2021-05-03
DESCRIPTION | 10 MD5 | 47 ++-- NEWS.md | 29 ++ R/data.R | 250 +++++++++++----------- README.md | 50 ++-- build |only data/academy.rda |binary data/box_office.rda |binary data/genres.rda |binary data/pixar_films.rda |binary data/pixar_people.rda |binary data/public_response.rda |binary inst/WORDLIST | 4 inst/doc |only man/pixar_films.Rd | 5 tests/spelling.R | 5 tests/testthat/test-data_academy.txt | 44 +-- tests/testthat/test-data_box_office_budget.txt | 44 +-- tests/testthat/test-data_box_office_numbers.txt | 44 +-- tests/testthat/test-data_box_office_worldwide.txt | 44 +-- tests/testthat/test-data_genres.txt | 44 +-- tests/testthat/test-data_pixar_films.txt | 46 ++-- tests/testthat/test-data_pixar_people.txt | 44 +-- tests/testthat/test-data_public_response.txt | 44 +-- vignettes |only 25 files changed, 403 insertions(+), 351 deletions(-)
Title: Intrinsic Dimension for Data Mining
Description: Contains techniques for mining large and high-dimensional data
sets by using the concept of Intrinsic Dimension (ID). Here the ID is
not necessarily an integer. It is extended to fractal dimensions. And
the Morisita estimator is used for the ID estimation, but other
tools are included as well.
Author: Jean Golay [aut, cre],
Mohamed Laib [aut]
Maintainer: Jean Golay <jeangolay@gmail.com>
Diff between IDmining versions 1.0.6 dated 2019-05-25 and 1.0.7 dated 2021-05-03
DESCRIPTION | 9 ++++----- MD5 | 46 +++++++++++++++++++++++----------------------- R/Butterfly.R | 2 +- R/IDmining.R | 6 +++--- R/MBFR.r | 2 +- R/MBFR_parallel.R | 2 +- R/MBRM.R | 2 +- R/MBRM_parallel.R | 4 ++-- R/MINDEX_SP.R | 6 +++--- R/MINDID.R | 6 +++--- R/MINDID_FMC.R | 6 +++--- R/RenDim.R | 8 ++++---- R/logMINDEX.R | 2 +- man/Butterfly.Rd | 2 +- man/IDmining-package.Rd | 6 +++--- man/MBFR.Rd | 2 +- man/MBFR_parallel.Rd | 2 +- man/MBRM.Rd | 2 +- man/MBRM_parallel.Rd | 4 ++-- man/MINDEX_SP.Rd | 6 +++--- man/MINDID.Rd | 6 +++--- man/MINDID_FMC.Rd | 6 +++--- man/RenDim.Rd | 8 ++++---- man/logMINDEX.Rd | 2 +- 24 files changed, 73 insertions(+), 74 deletions(-)
Title: Bayesian Structure Learning in Graphical Models using
Birth-Death MCMC
Description: Statistical tools for Bayesian structure learning in undirected graphical models for continuous, discrete, and mixed data. The package is implemented the recent improvements in the Bayesian graphical models literature, including Mohammadi and Wit (2015) <doi:10.1214/14-BA889>, Mohammadi and Wit (2019) <doi:10.18637/jss.v089.i03>.
Author: Reza Mohammadi [aut, cre] (<https://orcid.org/0000-0001-9538-0648>),
Ernst Wit [aut] (<https://orcid.org/0000-0002-3671-9610>),
Adrian Dobra [ctb] (<https://orcid.org/0000-0001-7793-2197>)
Maintainer: Reza Mohammadi <a.mohammadi@uva.nl>
Diff between BDgraph versions 2.63 dated 2020-08-26 and 2.64 dated 2021-05-03
DESCRIPTION | 7 +-- MD5 | 39 ++++++++++++------ NAMESPACE | 9 ++++ NEWS.md | 53 +++++++++++++++---------- R/bdgraph.R | 5 +- R/bdgraph.sim.R | 103 +++++++++++++++++++++++++++++++++++++------------- R/conf.mat.R |only R/conf.mat.plot.R |only R/ddweibull.R |only R/rmvnorm.R | 29 ++++++++------ R/roc.R |only R/sparsity.R |only build/partial.rdb |only inst/TODO | 6 +- inst/doc/vignette.pdf |binary man/adj2link.Rd | 2 man/bdgraph.sim.Rd | 2 man/churn.Rd | 2 man/conf.mat.Rd |only man/conf.mat.plot.Rd |only man/ddweibull.Rd |only man/geneExpression.Rd | 13 +++--- man/link2adj.Rd | 2 man/roc.Rd |only man/rwish.Rd | 1 man/sparsity.Rd |only 26 files changed, 187 insertions(+), 86 deletions(-)