Title: Search and Retrieve Spatial Data from 'GUGiK'
Description: Automatic open data acquisition from resources of Polish Head Office
of Geodesy and Cartography ('Główny Urząd Geodezji i Kartografii')
(<www.gugik.gov.pl>).
Available datasets include various types of numeric, raster and vector data,
such as orthophotomaps, digital elevation models (digital terrain models,
digital surface model, point clouds), state register of borders, spatial
databases, geometries of cadastral parcels, 3D models of buildings, and more.
It is also possible to geocode addresses or objects using the geocodePL_get()
function.
Author: Krzysztof Dyba [aut, cre] (<https://orcid.org/0000-0002-8614-3816>),
Jakub Nowosad [aut] (<https://orcid.org/0000-0002-1057-3721>),
Maciej Beręsewicz [ctb] (<https://orcid.org/0000-0002-8281-4301>),
GUGiK [ctb] (source of the data)
Maintainer: Krzysztof Dyba <adres7@gmail.com>
Diff between rgugik versions 0.3.0 dated 2021-04-11 and 0.3.1 dated 2021-05-04
DESCRIPTION | 6 +-- MD5 | 34 +++++++++++----------- README.md | 4 +- man/figures/README-f1-1.png |binary man/figures/README-f2-1.png |binary tests/testthat/test-DEM_request.R | 44 ++++++++++++++--------------- tests/testthat/test-borders_get.R | 3 + tests/testthat/test-emuia_download.R | 14 +-------- tests/testthat/test-geocodePL_get.R | 3 + tests/testthat/test-geodb_download.R | 43 +++++++++++----------------- tests/testthat/test-minmaxDTM_get.R | 3 + tests/testthat/test-models3D_download.R | 15 +-------- tests/testthat/test-ortho_request.R | 44 ++++++++++++++--------------- tests/testthat/test-parcel_get.R | 3 + tests/testthat/test-pointDTM100_download.R | 9 +---- tests/testthat/test-pointDTM_get.R | 3 + tests/testthat/test-tile_download.R | 13 +------- tests/testthat/test-topodb_download.R | 15 +-------- 18 files changed, 113 insertions(+), 143 deletions(-)
Title: Statistical Toolbox for Sedimentary Provenance Analysis
Description: Bundles a number of established statistical methods to facilitate the visual interpretation of large datasets in sedimentary geology. Includes functionality for adaptive kernel density estimation, principal component analysis, correspondence analysis, multidimensional scaling, generalised procrustes analysis and individual differences scaling using a variety of dissimilarity measures. Univariate provenance proxies, such as single-grain ages or (isotopic) compositions are compared with the Kolmogorov-Smirnov, Kuiper or Sircombe-Hazelton L2 distances. Categorical provenance proxies such as chemical compositions are compared with the Aitchison and Bray-Curtis distances, and point-counting data with the chi-square distance. Also included are tools to plot compositional and point-counting data on ternary diagrams and point-counting data on radial plots, to calculate the sample size required for specified levels of statistical precision, and to assess the effects of hydraulic sorting on detrital compositions. Includes an intuitive query-based user interface for users who are not proficient in R.
Author: Pieter Vermeesch [aut, cre]
Maintainer: Pieter Vermeesch <p.vermeesch@ucl.ac.uk>
Diff between provenance versions 3.2 dated 2021-04-03 and 3.3 dated 2021-05-04
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/plot.R | 10 +++++----- R/toolbox.R | 30 +++++++++++++++++------------- man/plot.compositional.Rd | 2 +- man/plot.distributional.Rd | 2 +- 6 files changed, 33 insertions(+), 29 deletions(-)
Title: Parametric Linkage Analysis
Description: Parametric linkage analysis of monogenic traits in medical
pedigrees. Features include singlepoint analysis, multipoint analysis via
'MERLIN' (Abecasis et al. (2002) <doi:10.1038/ng786>), visualisation of
log of the odds (LOD) scores and summaries of linkage peaks. Disease models
may be specified to accommodate phenocopies, reduced penetrance and
liability classes. 'paramlink2' is part of the 'ped suite' package
ecosystem, presented in 'Pedigree Analysis in R' (Vigeland, 2021,
ISBN:9780128244302).
Author: Magnus Dehli Vigeland [aut, cre]
(<https://orcid.org/0000-0002-9134-4962>)
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between paramlink2 versions 1.0.2 dated 2021-05-04 and 1.0.3 dated 2021-05-04
DESCRIPTION | 9 ++++++--- MD5 | 12 ++++++------ NAMESPACE | 1 + NEWS.md | 5 +++++ R/merlinLod.R | 11 ++++++++--- build/partial.rdb |binary man/merlinLod.Rd | 2 +- 7 files changed, 27 insertions(+), 13 deletions(-)
Title: Southern Ocean Frontal Distributions (Orsi)
Description: A data set package with the "Orsi" and "Park/Durand" fronts as
'SpatialLinesDataFrame' objects. The Orsi et al. (1995) fronts are published at
the Southern Ocean Atlas Database Page, and the Park et al. (2019) fronts are published at the 'SEANOE'
Altimetry-derived Antarctic Circumpolar Current fronts page, please see package CITATION for details.
Author: Michael D. Sumner [aut, cre]
Maintainer: Michael D. Sumner <mdsumner@gmail.com>
Diff between orsifronts versions 0.1.1 dated 2015-12-09 and 0.2.0 dated 2021-05-04
orsifronts-0.1.1/orsifronts/R/orsifronts.R |only orsifronts-0.1.1/orsifronts/data/orsifronts.rdata |only orsifronts-0.2.0/orsifronts/DESCRIPTION | 22 - orsifronts-0.2.0/orsifronts/MD5 | 27 - orsifronts-0.2.0/orsifronts/NAMESPACE | 12 orsifronts-0.2.0/orsifronts/R/orsifronts-package.R |only orsifronts-0.2.0/orsifronts/README.md | 50 ++ orsifronts-0.2.0/orsifronts/build/partial.rdb |only orsifronts-0.2.0/orsifronts/build/vignette.rds |binary orsifronts-0.2.0/orsifronts/data/orsifronts.rda |only orsifronts-0.2.0/orsifronts/data/parkfronts.rda |only orsifronts-0.2.0/orsifronts/inst/CITATION | 49 ++ orsifronts-0.2.0/orsifronts/inst/doc/orsifronts.R | 50 +- orsifronts-0.2.0/orsifronts/inst/doc/orsifronts.Rmd | 119 ++++--- orsifronts-0.2.0/orsifronts/inst/doc/orsifronts.html | 322 ++++++++++++------- orsifronts-0.2.0/orsifronts/man/orsifronts.Rd | 35 +- orsifronts-0.2.0/orsifronts/man/parkfronts.Rd |only orsifronts-0.2.0/orsifronts/vignettes/orsifronts.Rmd | 119 ++++--- 18 files changed, 505 insertions(+), 300 deletions(-)
Title: Dynamic Treatment Regimes for Survival Analysis
Description: Provides methods for estimating multi-stage optimal dynamic treatment regimes for survival outcomes with dependent censoring. Cho, H., Holloway, S. T., and Kosorok, M. R. (2020) <arXiv:2012.03294>.
Author: Shannon T. Holloway, Hunyong Cho
Maintainer: Shannon T. Holloway <sthollow@ncsu.edu>
Diff between dtrSurv versions 1.1 dated 2020-12-15 and 1.2 dated 2021-05-04
DESCRIPTION | 8 ++++---- MD5 | 19 ++++++++++--------- NEWS |only R/VerifyModels.R | 19 +++++++++++++------ R/class_DTRSurv.R | 24 ++++++++++++++++++++++++ R/dtrSurv.R | 51 +++++++++++++++++++++++++++++++++++++++++++++++++-- man/dtrSurv.Rd | 36 +++++++++++++++++++++++++++++++++--- man/predict.Rd | 9 +++++++++ man/print.Rd | 7 +++++++ man/show.Rd | 7 +++++++ man/stage.Rd | 4 ++++ 11 files changed, 160 insertions(+), 24 deletions(-)
Title: Search and Retrieve Data from the BC Data Catalogue
Description: Search, query, and download tabular and
'geospatial' data from the British Columbia Data Catalogue
(<https://catalogue.data.gov.bc.ca/>). Search catalogue data records
based on keywords, data licence, sector, data format, and B.C.
government organization. View metadata directly in R, download many
data formats, and query 'geospatial' data available via the B.C.
government Web Feature Service ('WFS') using 'dplyr' syntax.
Author: Andy Teucher [aut, cre] (<https://orcid.org/0000-0002-7840-692X>),
Sam Albers [aut, ctb] (<https://orcid.org/0000-0002-9270-7884>),
Stephanie Hazlitt [aut, ctb] (<https://orcid.org/0000-0002-3161-2304>),
Province of British Columbia [cph]
Maintainer: Andy Teucher <andy.teucher@gov.bc.ca>
Diff between bcdata versions 0.2.3 dated 2021-04-24 and 0.2.4 dated 2021-05-04
DESCRIPTION | 6 ++--- MD5 | 24 ++++++++++---------- NEWS.md | 5 ++++ R/bcdc_options.R | 47 +++++++++++++++++++++++++---------------- R/bcdc_search.R | 4 ++- R/utils-classes.R | 2 - R/utils.R | 5 ++-- R/zzz.R | 2 - man/bcdc_list_group_records.Rd | 4 ++- man/mutate.Rd | 2 - tests/testthat.R | 16 ++++++------- tests/testthat/test-options.R | 7 ++++++ tests/testthat/test-utils.R | 15 +++++++++++++ 13 files changed, 91 insertions(+), 48 deletions(-)
Title: Partially Separable Quasi-Newton
Description: Provides quasi-Newton methods to minimize partially separable
functions. The methods are largely described by
Nocedal and Wright (2006) <doi:10.1007/978-0-387-40065-5>.
Author: Benjamin Christoffersen [cre, aut]
(<https://orcid.org/0000-0002-7182-1346>)
Maintainer: Benjamin Christoffersen <boennecd@gmail.com>
Diff between psqn versions 0.2.0 dated 2021-04-17 and 0.2.1 dated 2021-05-04
DESCRIPTION | 6 +++--- MD5 | 13 +++++++------ NEWS | 5 +++++ tests/testthat/helper.R | 36 ++++++++++++++++++++++++++++++++++++ tests/testthat/test-cpp-api.R | 4 +++- tests/testthat/test-poly-ex.R | 18 +++++++----------- tests/testthat/test-psqn-generic.R | 26 +++++++++++++------------- tests/testthat/z-undo-helper.R |only 8 files changed, 74 insertions(+), 34 deletions(-)
Title: Descriptive Statistics, Transition Plots, and More
Description: Tools for making the descriptive "Table 1" used in medical
articles, a transition plot for showing changes between categories
(also known as a Sankey diagram), flow charts by extending the grid package,
a method for variable selection based on the SVD, Bézier lines with arrows
complementing the ones in the 'grid' package, and more.
Author: Max Gordon <max@gforge.se>
Maintainer: Max Gordon <max@gforge.se>
Diff between Gmisc versions 2.0.1 dated 2021-02-10 and 2.0.2 dated 2021-05-04
DESCRIPTION | 8 ++--- MD5 | 32 ++++++++++---------- NEWS | 8 +++++ R/docx_document.R | 2 - build/vignette.rds |binary inst/doc/Descriptives.html | 57 ++++++++++++++++++++---------------- inst/doc/Grid-based_flowcharts.html | 9 +++++ inst/doc/Transition-class.html | 13 ++++++-- inst/doc/transitionPlot.html | 13 ++++++-- inst/include/Gmisc.h | 1 man/bezierArrowGradient.Rd | 4 +- man/bezierArrowSmpl.Rd | 4 +- man/docx_document.Rd | 2 - src/Gmisc_lines.cpp | 2 - src/Makevars | 2 - src/Makevars.win | 2 - src/bezierArrowFn.cpp | 24 +++++++-------- 17 files changed, 110 insertions(+), 73 deletions(-)
Title: Models, Datasets and Transformations for Images
Description: Provides access to datasets, models and preprocessing
facilities for deep learning with images. Integrates seamlessly
with the 'torch' package and it's 'API' borrows heavily from
'PyTorch' vision package.
Author: Daniel Falbel [aut, cre],
RStudio [cph]
Maintainer: Daniel Falbel <daniel@rstudio.com>
Diff between torchvision versions 0.2.0 dated 2021-01-05 and 0.3.0 dated 2021-05-04
DESCRIPTION | 9 +++--- MD5 | 18 ++++++------- NEWS.md | 6 ++++ R/dataset-mnist.R | 14 ++++++---- R/transforms-defaults.R | 28 +++++++++++++++++++-- R/transforms-tensor.R | 48 +++++++++++++++++++++++-------------- README.md | 1 tests/testthat/test-transforms.R | 24 ++++++++++++++++-- tests/testthat/test-vision-utils.R | 1 tools/convert-models.py | 6 +++- 10 files changed, 110 insertions(+), 45 deletions(-)
Title: Bayesian Dynamic Factor Analysis (DFA) with 'Stan'
Description: Implements Bayesian dynamic factor analysis with 'Stan'. Dynamic
factor analysis is a dimension reduction tool for multivariate time series.
'bayesdfa' extends conventional dynamic factor models in several ways.
First, extreme events may be estimated in the latent trend by modeling
process error with a student-t distribution. Second, alternative constraints
(including proportions are allowed). Third, the estimated
dynamic factors can be analyzed with hidden Markov models to evaluate
support for latent regimes.
Author: Eric J. Ward [aut, cre],
Sean C. Anderson [aut],
Luis A. Damiano [aut],
Michael J. Malick [aut],
Mary E. Hunsicker, [ctb],
Mike A. Litzow [ctb],
Mark D. Scheuerell [ctb],
Elizabeth E. Holmes [ctb],
Nick Tolimieri [ctb],
Trustees of Columbia University [cph]
Maintainer: Eric J. Ward <eric.ward@noaa.gov>
Diff between bayesdfa versions 0.1.6 dated 2020-09-20 and 0.1.7 dated 2021-05-04
bayesdfa-0.1.6/bayesdfa/R/zzz.R |only bayesdfa-0.1.6/bayesdfa/inst/include/meta_header.hpp |only bayesdfa-0.1.6/bayesdfa/src/Modules.cpp |only bayesdfa-0.1.6/bayesdfa/src/init.cpp |only bayesdfa-0.1.6/bayesdfa/src/stan_files |only bayesdfa-0.1.6/bayesdfa/tools |only bayesdfa-0.1.6/bayesdfa/vignettes/combining_data.Rmd.orig |only bayesdfa-0.1.6/bayesdfa/vignettes/compositional.Rmd.orig |only bayesdfa-0.1.6/bayesdfa/vignettes/covariates.Rmd.orig |only bayesdfa-0.1.6/bayesdfa/vignettes/estimate_process_sigma.Rmd.orig |only bayesdfa-0.1.7/bayesdfa/DESCRIPTION | 36 bayesdfa-0.1.7/bayesdfa/MD5 | 103 +- bayesdfa-0.1.7/bayesdfa/NAMESPACE | 12 bayesdfa-0.1.7/bayesdfa/NEWS.md | 4 bayesdfa-0.1.7/bayesdfa/R/bayesdfa-package.R | 13 bayesdfa-0.1.7/bayesdfa/R/dfa_cv.R |only bayesdfa-0.1.7/bayesdfa/R/dfa_fitted.R |only bayesdfa-0.1.7/bayesdfa/R/dfa_loadings.R |only bayesdfa-0.1.7/bayesdfa/R/dfa_trends.R |only bayesdfa-0.1.7/bayesdfa/R/fit_dfa.R | 277 +++++-- bayesdfa-0.1.7/bayesdfa/R/plot_fitted.R | 80 -- bayesdfa-0.1.7/bayesdfa/R/plot_loadings.R | 35 bayesdfa-0.1.7/bayesdfa/R/plot_trends.R | 25 bayesdfa-0.1.7/bayesdfa/R/predicted.R | 18 bayesdfa-0.1.7/bayesdfa/R/sim.R | 29 bayesdfa-0.1.7/bayesdfa/R/stanmodels.R | 59 - bayesdfa-0.1.7/bayesdfa/build/vignette.rds |binary bayesdfa-0.1.7/bayesdfa/configure |only bayesdfa-0.1.7/bayesdfa/configure.win |only bayesdfa-0.1.7/bayesdfa/inst/doc/bayesdfa.R | 71 + bayesdfa-0.1.7/bayesdfa/inst/doc/bayesdfa.Rmd | 142 +++ bayesdfa-0.1.7/bayesdfa/inst/doc/bayesdfa.html | 393 +++++++--- bayesdfa-0.1.7/bayesdfa/inst/doc/combining_data.R |only bayesdfa-0.1.7/bayesdfa/inst/doc/combining_data.Rmd |only bayesdfa-0.1.7/bayesdfa/inst/doc/combining_data.html |only bayesdfa-0.1.7/bayesdfa/inst/doc/compositional.R |only bayesdfa-0.1.7/bayesdfa/inst/doc/compositional.Rmd |only bayesdfa-0.1.7/bayesdfa/inst/doc/compositional.html |only bayesdfa-0.1.7/bayesdfa/inst/doc/covariates.R |only bayesdfa-0.1.7/bayesdfa/inst/doc/covariates.Rmd |only bayesdfa-0.1.7/bayesdfa/inst/doc/covariates.html |only bayesdfa-0.1.7/bayesdfa/inst/doc/estimate_process_sigma.R |only bayesdfa-0.1.7/bayesdfa/inst/doc/estimate_process_sigma.Rmd |only bayesdfa-0.1.7/bayesdfa/inst/doc/estimate_process_sigma.html |only bayesdfa-0.1.7/bayesdfa/inst/include/stan_meta_header.hpp |only bayesdfa-0.1.7/bayesdfa/inst/stan |only bayesdfa-0.1.7/bayesdfa/man/bayesdfa-package.Rd | 2 bayesdfa-0.1.7/bayesdfa/man/dfa_cv.Rd |only bayesdfa-0.1.7/bayesdfa/man/dfa_fitted.Rd |only bayesdfa-0.1.7/bayesdfa/man/dfa_loadings.Rd |only bayesdfa-0.1.7/bayesdfa/man/dfa_trends.Rd |only bayesdfa-0.1.7/bayesdfa/man/fit_dfa.Rd | 50 + bayesdfa-0.1.7/bayesdfa/man/plot_fitted.Rd | 17 bayesdfa-0.1.7/bayesdfa/man/plot_trends.Rd | 2 bayesdfa-0.1.7/bayesdfa/man/predicted.Rd | 5 bayesdfa-0.1.7/bayesdfa/src/Makevars | 23 bayesdfa-0.1.7/bayesdfa/src/Makevars.win | 23 bayesdfa-0.1.7/bayesdfa/src/RcppExports.cpp |only bayesdfa-0.1.7/bayesdfa/src/stanExports_corr.cc |only bayesdfa-0.1.7/bayesdfa/src/stanExports_corr.h |only bayesdfa-0.1.7/bayesdfa/src/stanExports_dfa.cc |only bayesdfa-0.1.7/bayesdfa/src/stanExports_dfa.h |only bayesdfa-0.1.7/bayesdfa/src/stanExports_hmm_gaussian.cc |only bayesdfa-0.1.7/bayesdfa/src/stanExports_hmm_gaussian.h |only bayesdfa-0.1.7/bayesdfa/src/stanExports_regime_1.cc |only bayesdfa-0.1.7/bayesdfa/src/stanExports_regime_1.h |only bayesdfa-0.1.7/bayesdfa/tests/testthat/test-fit.R | 62 + bayesdfa-0.1.7/bayesdfa/vignettes/bayesdfa.Rmd | 142 +++ bayesdfa-0.1.7/bayesdfa/vignettes/combining_data.Rmd |only bayesdfa-0.1.7/bayesdfa/vignettes/compositional.Rmd |only bayesdfa-0.1.7/bayesdfa/vignettes/covariates.Rmd |only bayesdfa-0.1.7/bayesdfa/vignettes/estimate_process_sigma.Rmd |only 72 files changed, 1123 insertions(+), 500 deletions(-)
Title: Weighted Smooth Backfitting for Structured Models
Description: Non- and semiparametric regression for generalized additive, partial linear, and varying coefficient models as well as their combinations via smoothed backfitting. Based on Roca-Pardinas J and Sperlich S (2010) <doi:10.1007/s11222-009-9130-2>; Mammen E, Linton O and Nielsen J (1999) <doi:10.1214/aos/1017939138>; Lee YK, Mammen E, Park BU (2012) <doi:10.1214/12-AOS1026>.
Author: Javier Roca-Pardinas [aut, cre],
Maria Xose Rodriguez-Alvarez [aut],
Stefan Sperlich [aut],
Alan Miller (FORTRAN code lsq.f90: weighted least-squares module) [ctb]
Maintainer: Javier Roca-Pardinas <roca@uvigo.es>
Diff between wsbackfit versions 1.0-4 dated 2021-03-09 and 1.0-5 dated 2021-05-04
DESCRIPTION | 8 +++---- MD5 | 10 ++++----- NEWS | 4 +++ build/partial.rdb |binary man/wsbackfit-package.Rd | 4 +-- src/wsbackfit.f90 | 51 +++++++++++++++++++++++++++++++++++------------ 6 files changed, 54 insertions(+), 23 deletions(-)
Title: 'systemPipeShiny' UI and Server Components
Description: The systemPipeShiny (SPS) framework comes with many UI and server components. However, installing the whole framework is heavy and takes some time. If you would like to use UI and server components from SPS in your own Shiny apps, but do not want to install the whole framework, just install this package.
Author: Le Zhang [aut, cre]
Maintainer: Le Zhang <lezhang100@gmail.com>
Diff between spsComps versions 0.1.1 dated 2021-03-09 and 0.2 dated 2021-05-04
DESCRIPTION | 11 - MD5 | 44 +++-- NAMESPACE | 9 + NEWS.md | 37 ++++ R/css_loader.R |only R/depend.R | 107 ++++++++++++- R/font_awesome_animate.R |only R/spsServerCollections.R | 202 ++++++++++++++----------- R/spsUIcollections.R | 165 +++++++++++++------- R/zzz.R | 3 README.md | 8 inst/assets/css/css_loader.css |only inst/assets/css/font-awesome-animation.min.css |only inst/assets/css/sps-comps.css | 7 inst/assets/js/bs3pop_tip.js | 7 inst/assets/js/sps-comps.js | 10 - inst/assets/js/sps_animation.js |only inst/assets/js/sps_cssloader.js |only man/addLoader.Rd |only man/animateIcon.Rd |only man/animateUI.Rd |only man/cssLoader.Rd |only man/gallery.Rd | 14 + man/hexPanel.Rd | 8 man/hrefTab.Rd | 3 man/hrefTable.Rd | 3 man/shinyCatch.Rd | 10 + man/spsDepend.Rd | 16 + 28 files changed, 479 insertions(+), 185 deletions(-)
Title: Estimating Disease Prevalence from Registry Data
Description: Estimates disease prevalence for a given index date using existing
registry data extended with Monte Carlo simulations following the method of Crouch et al (2014) <doi: 10.1016/j.canep.2014.02.005>.
Author: Stuart Lacy [cre, aut],
Simon Crouch [aut],
Stephanie Lax [aut]
Maintainer: Stuart Lacy <stuart.lacy@york.ac.uk>
Diff between rprev versions 1.0.4 dated 2020-03-20 and 1.0.5 dated 2021-05-04
DESCRIPTION | 16 - MD5 | 18 - R/data.R | 2 README.md | 2 build/vignette.rds |binary inst/doc/diagnostics.html | 479 ++++++++++++--------------------- inst/doc/user_guide.html | 644 +++++++++++++++++---------------------------- man/UKmortality.Rd | 8 man/prevsim.Rd | 6 vignettes/bibliography.bib | 2 10 files changed, 450 insertions(+), 727 deletions(-)
Title: Kernel k Nearest Neighbors
Description: Extends the simple k-nearest neighbors algorithm by incorporating numerous kernel functions and a variety of distance metrics. The package takes advantage of 'RcppArmadillo' to speed up the calculation of distances between observations.
Author: Lampros Mouselimis [aut, cre] (<https://orcid.org/0000-0002-8024-1546>)
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between KernelKnn versions 1.1.1 dated 2021-05-03 and 1.1.2 dated 2021-05-04
DESCRIPTION | 8 - MD5 | 12 +- NEWS.md | 5 + inst/CITATION | 2 inst/doc/binary_classification_using_the_ionosphere_data.html | 42 +++++----- inst/doc/image_classification_using_MNIST_CIFAR_data.html | 4 inst/doc/regression_using_the_housing_data.html | 4 7 files changed, 41 insertions(+), 36 deletions(-)
Title: Working with Audio and Video in R
Description: Bindings to 'FFmpeg' <http://www.ffmpeg.org/> AV library for working with
audio and video in R. Generates high quality video from images or R graphics with
custom audio. Also offers high performance tools for reading raw audio, creating
'spectrograms', and converting between countless audio / video formats. This package
interfaces directly to the C API and does not require any command line utilities.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between av versions 0.5.1 dated 2020-09-28 and 0.6.0 dated 2021-05-04
DESCRIPTION | 7 +++---- MD5 | 15 ++++++++------- NEWS | 4 ++++ R/fft.R | 1 + R/formats.R | 2 +- configure | 26 +++++++++++++------------- src/Makevars.ucrt |only src/Makevars.win | 2 +- src/fft.c | 7 ++++++- 9 files changed, 37 insertions(+), 27 deletions(-)
Title: Automatic Structural Time Series Models
Description: Automatic model selection for structural time series decomposition into trend, cycle, and seasonal components using the Kalman filter.
Koopman, Siem Jan and Marius Ooms (2012) "Forecasting Economic Time Series Using Unobserved Components Time Series Models" <doi:10.1093/oxfordhb/9780195398649.013.0006>.
Kim, Chang-Jin and Charles R. Nelson (1999) "State-Space Models with Regime Switching: Classical and Gibbs-Sampling Approaches with Applications" <doi:10.7551/mitpress/6444.001.0001><http://econ.korea.ac.kr/~cjkim/>.
Author: Alex Hubbard
Maintainer: Alex Hubbard <hubbard.alex@gmail.com>
Diff between autostsm versions 1.2.2 dated 2021-04-07 and 1.3 dated 2021-05-04
autostsm-1.2.2/autostsm/R/stsm_detect_factors.R |only autostsm-1.2.2/autostsm/R/stsm_multivar_ssm.R |only autostsm-1.2.2/autostsm/data/sw_dcf.RData |only autostsm-1.2.2/autostsm/man/sw_dcf.Rd |only autostsm-1.3/autostsm/DESCRIPTION | 10 autostsm-1.3/autostsm/MD5 | 30 - autostsm-1.3/autostsm/R/data.R | 21 - autostsm-1.3/autostsm/R/stsm_detect_breaks.R | 4 autostsm-1.3/autostsm/R/stsm_detect_cycle.R | 110 ++++-- autostsm-1.3/autostsm/R/stsm_detect_seasonality.R | 292 ++++++++++++------ autostsm-1.3/autostsm/R/stsm_estimate.R | 43 +- autostsm-1.3/autostsm/inst/doc/autostsm_vignette.R | 12 autostsm-1.3/autostsm/inst/doc/autostsm_vignette.Rmd | 32 + autostsm-1.3/autostsm/inst/doc/autostsm_vignette.html | 29 + autostsm-1.3/autostsm/man/stsm_detect_cycle.Rd | 86 +++-- autostsm-1.3/autostsm/man/stsm_detect_seasonality.Rd | 94 +++-- autostsm-1.3/autostsm/man/stsm_estimate.Rd | 4 autostsm-1.3/autostsm/vignettes/autostsm_vignette.Rmd | 32 + 18 files changed, 515 insertions(+), 284 deletions(-)
Title: R Bindings for 'ZeroMQ'
Description: Interface to the 'ZeroMQ' lightweight messaging kernel (see <https://zeromq.org/> for more information).
Author: Whit Armstrong [aut],
Michael Schubert [ctb],
Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between rzmq versions 0.9.7 dated 2020-01-31 and 0.9.8 dated 2021-05-04
rzmq-0.9.7/rzmq/README.md |only rzmq-0.9.8/rzmq/DESCRIPTION | 14 ++++++-------- rzmq-0.9.8/rzmq/MD5 | 24 ++++++++++++------------ rzmq-0.9.8/rzmq/NAMESPACE | 1 + rzmq-0.9.8/rzmq/NEWS | 3 +++ rzmq-0.9.8/rzmq/R/rzmq.R | 4 ++++ rzmq-0.9.8/rzmq/cleanup | 2 +- rzmq-0.9.8/rzmq/configure | 28 ++++++++++++++-------------- rzmq-0.9.8/rzmq/man/socket.options.Rd | 2 ++ rzmq-0.9.8/rzmq/src/Makevars.ucrt |only rzmq-0.9.8/rzmq/src/Makevars.win | 6 ++++-- rzmq-0.9.8/rzmq/src/interface.cpp | 18 ++++++++++++++++++ rzmq-0.9.8/rzmq/src/interface.h | 1 + rzmq-0.9.8/rzmq/tools/winlibs.R | 4 ++-- 14 files changed, 68 insertions(+), 39 deletions(-)
Title: Superpixel Image Segmentation
Description: Image Segmentation using Superpixels, Affinity Propagation and Kmeans Clustering. The R code is based primarily on the article "Image Segmentation using SLIC Superpixels and Affinity Propagation Clustering, Bao Zhou, International Journal of Science and Research (IJSR), 2013" <https://www.ijsr.net/archive/v4i4/SUB152869.pdf>.
Author: Lampros Mouselimis [aut, cre] (<https://orcid.org/0000-0002-8024-1546>)
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between SuperpixelImageSegmentation versions 1.0.3 dated 2021-03-05 and 1.0.4 dated 2021-05-04
DESCRIPTION | 16 ++++++++-------- MD5 | 11 ++++++----- NEWS.md | 5 +++++ R/px_utils.R | 3 ++- README.md | 3 +-- inst/CITATION |only man/Image_Segmentation.Rd | 2 +- 7 files changed, 23 insertions(+), 17 deletions(-)
More information about SuperpixelImageSegmentation at CRAN
Permanent link
Title: Species-Habitat Associations
Description: Analyse species-habitat associations in R. Therefore, information about the
location of the species is needed and about the environmental conditions. To test
for significance habitat associations, one of the two components is randomized.
Methods are mainly based on Plotkin et al. (2000) <doi:10.1006/jtbi.2000.2158> and
Harms et al. (2001) <doi:10.1111/j.1365-2745.2001.00615.x>.
Author: Maximillian H.K. Hesselbarth [aut, cre]
(<https://orcid.org/0000-0003-1125-9918>),
Marco Sciaini [aut] (<https://orcid.org/0000-0002-3042-5435>)
Maintainer: Maximillian H.K. Hesselbarth <mhk.hesselbarth@gmail.com>
Diff between shar versions 1.2 dated 2021-03-15 and 1.2.1 dated 2021-05-04
DESCRIPTION | 10 +-- MD5 | 22 ++++---- NEWS.md | 5 + R/reconstruct_pattern_homo.R | 66 +++++++++++++++++++++--- R/reconstruct_pattern_marks.R | 37 ++++++++++--- build/vignette.rds |binary inst/doc/get_started.html | 4 - man/reconstruct_pattern_homo.Rd | 15 +++++ man/shar.Rd | 4 - tests/testthat/Rplots.pdf |binary tests/testthat/test-reconstruct_pattern_homo.R | 25 +++++++++ tests/testthat/test-reconstruct_pattern_marks.R | 49 ++++++++++++++--- 12 files changed, 192 insertions(+), 45 deletions(-)
Title: Zooarchaeological Analysis with Log-Ratios
Description: Includes functions and reference data to
generate and manipulate log-ratios (also known as log size index (LSI)
values) from measurements obtained on zooarchaeological material. Log
ratios are used to compare the relative (rather than the absolute)
dimensions of animals from archaeological contexts
(Meadow 1999, ISBN: 9783896463883).
zoolog is also able to seamlessly integrate data and references
with heterogeneous nomenclature, which is internally managed by a
zoolog thesaurus.
A preliminary version of the zoolog methods was first used by
Trentacoste, Nieto-Espinet, and Valenzuela-Lamas (2018)
<doi:10.1371/journal.pone.0208109>.
Author: Jose M Pozo [aut, cre] (<https://orcid.org/0000-0002-0759-3510>),
Silvia Valenzuela-Lamas [aut] (<https://orcid.org/0000-0001-9886-0372>),
Angela Trentacoste [aut] (<https://orcid.org/0000-0001-7096-5252>),
Ariadna Nieto-Espinet [aut] (<https://orcid.org/0000-0003-2567-1735>),
Silvia Guimarães Chiarelli [aut]
(<https://orcid.org/0000-0002-3778-3315>)
Maintainer: Jose M Pozo <josmpozo@gmail.com>
Diff between zoolog versions 0.3.0 dated 2021-04-07 and 0.3.1 dated 2021-05-04
zoolog-0.3.0/zoolog/inst/icon.png |only zoolog-0.3.0/zoolog/inst/icon2.png |only zoolog-0.3.0/zoolog/inst/icon3.png |only zoolog-0.3.0/zoolog/inst/icon3b.png |only zoolog-0.3.0/zoolog/inst/icon4.png |only zoolog-0.3.0/zoolog/inst/icon5.png |only zoolog-0.3.0/zoolog/man/figures |only zoolog-0.3.1/zoolog/DESCRIPTION | 9 +-- zoolog-0.3.1/zoolog/MD5 | 53 +++++++-------------- zoolog-0.3.1/zoolog/NEWS.md | 6 ++ zoolog-0.3.1/zoolog/R/CondenseLogs.R | 5 + zoolog-0.3.1/zoolog/R/InCategory.R | 2 zoolog-0.3.1/zoolog/R/LogRatios.R | 5 + zoolog-0.3.1/zoolog/R/RemoveNACases.R | 7 +- zoolog-0.3.1/zoolog/R/StandardizeNomenclature.R | 8 +-- zoolog-0.3.1/zoolog/R/exampleDataset.R | 7 +- zoolog-0.3.1/zoolog/README.md | 4 - zoolog-0.3.1/zoolog/build/partial.rdb |binary zoolog-0.3.1/zoolog/inst/doc/index.R | 2 zoolog-0.3.1/zoolog/inst/doc/index.Rmd | 12 ++-- zoolog-0.3.1/zoolog/inst/doc/index.html | 22 ++++---- zoolog-0.3.1/zoolog/man/CondenseLogs.Rd | 5 + zoolog-0.3.1/zoolog/man/InCategory.Rd | 2 zoolog-0.3.1/zoolog/man/LogRatios.Rd | 5 + zoolog-0.3.1/zoolog/man/RemoveNACases.Rd | 7 +- zoolog-0.3.1/zoolog/man/StandardizeNomenclature.Rd | 8 +-- zoolog-0.3.1/zoolog/man/dataValenzuelaLamas2008.Rd | 7 +- zoolog-0.3.1/zoolog/vignettes/index.Rmd | 12 ++-- 28 files changed, 97 insertions(+), 91 deletions(-)
Title: Find, Download and Process Sentinel-2 Data
Description: Functions to download Sentinel-2 optical images
and perform preliminary processing operations.
'sen2r' provides the instruments required to easily perform
(and eventually automate) the steps necessary to build a complete
Sentinel-2 processing chain.
A Graphical User Interface to facilitate data processing is also provided.
For additional documentation refer to the following article:
Ranghetti et al. (2020) <doi:10.1016/j.cageo.2020.104473>.
Author: Luigi Ranghetti [aut, cre] (<https://orcid.org/0000-0001-6207-5188>),
Lorenzo Busetto [aut] (<https://orcid.org/0000-0001-9634-6038>)
Maintainer: Luigi Ranghetti <luigi@ranghetti.info>
Diff between sen2r versions 1.4.2 dated 2021-03-04 and 1.4.3 dated 2021-05-04
DESCRIPTION | 15 - MD5 | 327 ++++++++++++------------- NAMESPACE | 2 NEWS.md | 22 + R/abs2rel.R | 10 R/add_rgb_image.R | 2 R/add_tile_suffix.R | 3 R/build_example_param_file.R | 2 R/calcindex.R | 2 R/check_gdal.R | 4 R/check_gui_deps.R | 2 R/check_param_list.R | 13 R/check_sen2r_deps.R | 2 R/compute_s2_paths.R | 2 R/comsub.R | 2 R/create_indices_db.R | 2 R/create_s2_dop.R | 2 R/expand_path.R | 4 R/expect_equal_crs.R | 2 R/fix_envi_format.R | 2 R/gdalUtil.R | 4 R/gdal_abs2rel.R | 2 R/gdal_warp.R | 11 R/gdalwarp_grid.R | 2 R/gipp.R | 8 R/give_write_permission.R | 2 R/helpers_extent.R | 2 R/ignorelist.R | 2 R/init_python.R | 2 R/install_aria2.R | 2 R/install_sen2cor.R | 2 R/list_indices.R | 2 R/load_binpaths.R | 2 R/mountpoint.R | 2 R/nn.R | 2 R/print_message.R | 2 R/projpar.R | 2 R/raster_metadata.R | 2 R/s2_calcindices.R | 2 R/s2_dop.R | 2 R/s2_download.R | 17 - R/s2_gui.R | 16 - R/s2_list.R | 45 ++- R/s2_mask.R | 2 R/s2_merge.R | 2 R/s2_order.R | 43 ++- R/s2_rgb.R | 2 R/s2_thumbnails.R | 6 R/s2_tiles.R | 16 - R/s2_translate.R | 4 R/safe_getMetadata.R | 12 R/safe_is_online.R | 10 R/safe_shortname.R | 2 R/safelist-class.R | 4 R/scihub_login.R | 59 ++-- R/sen2cor.R | 5 R/sen2r.R | 70 +++-- R/sen2r_getElements.R | 2 R/sen2r_process_report.R | 2 R/smooth_mask.R | 2 R/st_crs2.R | 2 R/str_pad2.R | 2 R/tile_utmzone.R | 2 R/tiles_intersects.R | 19 + R/trace_functions.R | 2 R/zzz.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 4 inst/WORDLIST | 141 +++++----- man/abs2rel.Rd | 10 man/add_rgb_image.Rd | 2 man/add_tile_suffix.Rd | 2 man/build_example_param_file.Rd | 2 man/calcindex.Rd | 2 man/check_gdal.Rd | 4 man/check_gui_deps.Rd | 2 man/check_param_list.Rd | 2 man/check_sen2r_deps.Rd | 2 man/compute_s2_paths.Rd | 2 man/comsub.Rd | 2 man/create_indices_db.Rd | 2 man/create_s2_dop.Rd | 2 man/expand_path.Rd | 2 man/expect_equal_crs.Rd | 2 man/fix_envi_format.Rd | 2 man/gdalUtil.Rd | 4 man/gdal_abs2rel_rel2abs.Rd | 2 man/gdal_warp.Rd | 7 man/gdalwarp_grid.Rd | 2 man/gipp.Rd | 6 man/gipp_init.Rd | 2 man/give_write_permission.Rd | 2 man/ignorelist.Rd | 2 man/init_python.Rd | 2 man/install_aria2.Rd | 2 man/install_sen2cor.Rd | 2 man/list_indices.Rd | 2 man/load_binpaths.Rd | 2 man/load_extent.Rd | 2 man/mountpoint.Rd | 2 man/nn.Rd | 2 man/normalize_path.Rd | 2 man/print_message.Rd | 2 man/projpar.Rd | 2 man/raster2rgb.Rd | 2 man/raster_metadata.Rd | 2 man/s2_calcindices.Rd | 2 man/s2_dop.Rd | 2 man/s2_download.Rd | 4 man/s2_gui.Rd | 2 man/s2_list.Rd | 2 man/s2_mask.Rd | 2 man/s2_merge.Rd | 2 man/s2_order.Rd | 2 man/s2_rgb.Rd | 2 man/s2_thumbnails.Rd | 2 man/s2_tiles.Rd | 16 - man/s2_translate.Rd | 2 man/safe_getMetadata.Rd | 4 man/safe_is_online.Rd | 2 man/safe_shortname.Rd | 2 man/safelist-class.Rd | 4 man/scihub_login.Rd | 14 - man/sen2cor.Rd | 5 man/sen2r.Rd | 2 man/sen2r_getElements.Rd | 2 man/sen2r_process_report.Rd | 2 man/smooth_mask.Rd | 2 man/st_crs2.Rd | 2 man/stack2rgb.Rd | 2 man/str_pad2.Rd | 2 man/tile_utmzone.Rd | 2 man/tiles_intersects.Rd | 4 man/trace_function.Rd | 2 tests/testthat/setup-commons.R | 8 tests/testthat/setup-dependencies.R |only tests/testthat/setup-scihub_creds.R | 9 tests/testthat/test-abs2rel.R | 4 tests/testthat/test-build_example_param_file.R | 2 tests/testthat/test-gdal_warp.R | 30 ++ tests/testthat/test-gdalwarp_grid.R | 2 tests/testthat/test-list_indices.R | 2 tests/testthat/test-load_binpaths.R | 4 tests/testthat/test-mountpoint.R | 4 tests/testthat/test-projpar.R | 2 tests/testthat/test-s2_calcindices.R | 8 tests/testthat/test-s2_dop.R | 2 tests/testthat/test-s2_download.R | 37 -- tests/testthat/test-s2_list.R | 55 +++- tests/testthat/test-s2_mask.R | 6 tests/testthat/test-s2_order.R | 16 - tests/testthat/test-s2_rgb.R | 2 tests/testthat/test-safelist-class.R | 2 tests/testthat/test-scihub_login.R | 15 - tests/testthat/test-sen2cor.R | 15 - tests/testthat/test-sen2r-00_connection.R | 3 tests/testthat/test-sen2r-01_merge.R | 37 ++ tests/testthat/test-sen2r-02_warp.R | 73 ++++- tests/testthat/test-sen2r-03_mask.R | 8 tests/testthat/test-sen2r-04_indices.R | 8 tests/testthat/test-sen2r-05_rgb.R | 8 tests/testthat/test-sen2r-06_ignorelist.R | 32 ++ tests/testthat/test-sen2r_getElements.R | 2 tests/testthat/test-st_crs2.R | 2 165 files changed, 951 insertions(+), 609 deletions(-)
Title: An Image Processing Toolkit
Description: Incorporates functions for image preprocessing, filtering and image recognition. The package takes advantage of 'RcppArmadillo' to speed up computationally intensive functions. The histogram of oriented gradients descriptor is a modification of the 'findHOGFeatures' function of the 'SimpleCV' computer vision platform, the average_hash(), dhash() and phash() functions are based on the 'ImageHash' python library. The Gabor Feature Extraction functions are based on 'Matlab' code of the paper, "CloudID: Trustworthy cloud-based and cross-enterprise biometric identification" by M. Haghighat, S. Zonouz, M. Abdel-Mottaleb, Expert Systems with Applications, vol. 42, no. 21, pp. 7905-7916, 2015, <doi:10.1016/j.eswa.2015.06.025>. The 'SLIC' and 'SLICO' superpixel algorithms were explained in detail in (i) "SLIC Superpixels Compared to State-of-the-art Superpixel Methods", Radhakrishna Achanta, Appu Shaji, Kevin Smith, Aurelien Lucchi, Pascal Fua, and Sabine Suesstrunk, IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 34, num. 11, p. 2274-2282, May 2012, <doi:10.1109/TPAMI.2012.120> and (ii) "SLIC Superpixels", Radhakrishna Achanta, Appu Shaji, Kevin Smith, Aurelien Lucchi, Pascal Fua, and Sabine Suesstrunk, EPFL Technical Report no. 149300, June 2010.
Author: Lampros Mouselimis [aut, cre] (<https://orcid.org/0000-0002-8024-1546>),
Sight Machine [cph] (findHOGFeatures function of the SimpleCV computer
vision platform),
Johannes Buchner [cph] (average_hash, dhash and phash functions of the
ImageHash python library),
Mohammad Haghighat [cph] (Gabor Feature Extraction),
Radhakrishna Achanta [cph] (Author of the C++ code of the SLIC and
SLICO algorithms (for commercial use please contact the author))
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between OpenImageR versions 1.1.7 dated 2020-06-18 and 1.1.8 dated 2021-05-04
DESCRIPTION | 14 ++-- MD5 | 29 +++++----- NEWS.md | 4 + README.md | 1 inst/CITATION |only inst/doc/Gabor_Feature_Extraction.Rmd | 4 - inst/doc/Gabor_Feature_Extraction.html | 34 ++++++++++- inst/doc/Image_segmentation_superpixels_clustering.Rmd | 6 +- inst/doc/Image_segmentation_superpixels_clustering.html | 36 ++++++++++-- inst/doc/The_OpenImageR_package.Rmd | 2 inst/doc/The_OpenImageR_package.html | 46 ++++++++++++---- inst/include/OpenImageRheader.h | 38 ++++++------- src/extract_inst_folder_headers.cpp | 12 ++-- vignettes/Gabor_Feature_Extraction.Rmd | 4 - vignettes/Image_segmentation_superpixels_clustering.Rmd | 6 +- vignettes/The_OpenImageR_package.Rmd | 2 16 files changed, 160 insertions(+), 78 deletions(-)
Title: Bindings to 'OpenCV' Computer Vision Library
Description: Experimenting with computer vision and machine learning in R. This
package exposes some of the available 'OpenCV' <https://opencv.org/> algorithms,
such as edge, body or face detection. These can either be applied to analyze
static images, or to filter live video footage from a camera device.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>),
Jan Wijffels [aut]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between opencv versions 0.2.0 dated 2020-09-24 and 0.2.1 dated 2021-05-04
DESCRIPTION | 7 +++---- MD5 | 17 +++++++++-------- configure | 37 +++++++++++++++++-------------------- src/Makevars.ucrt |only src/Makevars.win | 2 +- src/areas.cpp | 2 +- src/effects.cpp | 4 ++-- src/face.cpp | 4 ++-- src/features.cpp | 2 +- src/opencv_types.h | 8 ++++++++ 10 files changed, 44 insertions(+), 39 deletions(-)
Title: Downloading, Reading and Analysing POF Microdata
Description: Provides tools for downloading, reading and analysing the POF,
a household survey from Brazilian Institute of Geography and Statistics - IBGE.
The data must be downloaded from the official website <https://www.ibge.gov.br/>.
Further analysis must be made using package 'survey'.
Author: Gabriel Assuncao [aut, cre],
Luna Hidalgo [aut],
Douglas Braga [ctb]
Maintainer: Gabriel Assuncao <pacotesipd@ibge.gov.br>
Diff between POFIBGE versions 0.1.1 dated 2021-04-22 and 0.1.2 dated 2021-05-04
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- R/get_pof.R | 33 ++++++++++++++++++++------------- R/pof_deflator.R | 6 +++--- R/pof_design.R | 8 ++++---- R/pof_labeller.R | 4 ++-- R/read_pof.R | 2 +- man/get_pof.Rd | 9 ++++++--- man/pof_deflator.Rd | 6 +++--- man/pof_design.Rd | 8 ++++---- man/pof_labeller.Rd | 4 ++-- man/read_pof.Rd | 2 +- 12 files changed, 60 insertions(+), 50 deletions(-)
Title: Downloading, Reading and Analysing PNADC Microdata
Description: Provides tools for downloading, reading and analysing the PNADC,
a household survey from Brazilian Institute of Geography and Statistics - IBGE.
The data must be downloaded from the official website <https://www.ibge.gov.br/>.
Further analysis must be made using package 'survey'.
Author: Douglas Braga [aut],
Gabriel Assuncao [aut, cre],
Luna Hidalgo [ctb]
Maintainer: Gabriel Assuncao <pacotesipd@ibge.gov.br>
Diff between PNADcIBGE versions 0.6.3 dated 2021-04-22 and 0.6.4 dated 2021-05-04
DESCRIPTION | 6 +- MD5 | 24 +++++------ R/example.R | 2 R/get_pnadc.R | 108 +++++++++++++++++++++++++++----------------------- R/pnadc_deflator.R | 6 +- R/pnadc_design.R | 10 ++-- R/pnadc_labeller.R | 6 +- R/read_pnadc.R | 4 - man/get_pnadc.Rd | 7 ++- man/pnadc_deflator.Rd | 4 - man/pnadc_design.Rd | 8 +-- man/pnadc_labeller.Rd | 4 - man/read_pnadc.Rd | 2 13 files changed, 102 insertions(+), 89 deletions(-)
Title: Model and Analyse Interval Data
Description: Implements methodologies for modelling interval data by Normal
and Skew-Normal distributions, considering appropriate parameterizations of
the variance-covariance matrix that takes into account the intrinsic nature of
interval data, and lead to four different possible configuration structures.
The Skew-Normal parameters can be estimated by maximum likelihood, while Normal
parameters may be estimated by maximum likelihood or robust trimmed maximum
likelihood methods.
Author: Pedro Duarte Silva <psilva@porto.ucp.pt>, Paula Brito
<mpbrito.fep.up.pt>
Maintainer: Pedro Duarte Silva <psilva@porto.ucp.pt>
Diff between MAINT.Data versions 2.6.0 dated 2021-04-26 and 2.6.1 dated 2021-05-04
CHANGELOG | 7 DESCRIPTION | 10 MD5 | 24 - NAMESPACE | 2 R/DACrossVal.R | 5 R/IData.R | 775 +++++++++++++++++++++++----------------------- R/IdtMaxLikSN.R | 2 R/IdtMclust_methods.R | 137 +++----- R/IdtOutl_methods.R | 4 R/mle.R | 2 man/MAINT.Data-package.Rd | 4 man/pcoordplot-methos.Rd | 5 man/plotInfCrt-methos.Rd | 14 13 files changed, 503 insertions(+), 488 deletions(-)
Title: Downloading, Reading and Analysing PNAD COVID19 Microdata
Description: Provides tools for downloading, reading and analysing the PNAD COVID19,
a household survey from Brazilian Institute of Geography and Statistics - IBGE.
The data must be downloaded from the official website <https://www.ibge.gov.br/>.
Further analysis must be made using package 'survey'.
Author: Gabriel Assuncao [aut, cre],
Luna Hidalgo [aut],
Douglas Braga [ctb]
Maintainer: Gabriel Assuncao <pacotesipd@ibge.gov.br>
Diff between COVIDIBGE versions 0.1.3 dated 2021-04-22 and 0.1.4 dated 2021-05-04
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- R/covid_deflator.R | 4 ++-- R/covid_design.R | 8 ++++---- R/covid_labeller.R | 4 ++-- R/get_covid.R | 24 +++++++++++++++--------- R/read_covid.R | 2 +- man/covid_deflator.Rd | 4 ++-- man/covid_design.Rd | 8 ++++---- man/covid_labeller.Rd | 4 ++-- man/get_covid.Rd | 3 ++- man/read_covid.Rd | 2 +- 12 files changed, 49 insertions(+), 42 deletions(-)
Title: Sparse and Dense Matrix Classes and Methods
Description: A rich hierarchy of matrix classes, including triangular,
symmetric, and diagonal matrices, both dense and sparse and with
pattern, logical and numeric entries. Numerous methods for and
operations on these matrices, using 'LAPACK' and 'SuiteSparse' libraries.
Author: Douglas Bates [aut],
Martin Maechler [aut, cre] (<https://orcid.org/0000-0002-8685-9910>),
Timothy A. Davis [ctb] (SuiteSparse and 'cs' C libraries, notably
CHOLMOD, AMD; collaborators listed in dir(pattern =
'^[A-Z]+[.]txt$', full.names=TRUE, system.file('doc',
'SuiteSparse', package='Matrix'))),
Jens Oehlschlägel [ctb] (initial nearPD()),
Jason Riedy [ctb] (condest() and onenormest() for octave, Copyright:
Regents of the University of California),
R Core Team [ctb] (base R matrix implementation)
Maintainer: Martin Maechler <mmaechler+Matrix@gmail.com>
Diff between Matrix versions 1.3-2 dated 2021-01-06 and 1.3-3 dated 2021-05-04
Matrix-1.3-2/Matrix/po/R-en@quot.po |only Matrix-1.3-2/Matrix/po/en@quot.po |only Matrix-1.3-3/Matrix/DESCRIPTION | 10 Matrix-1.3-3/Matrix/MD5 | 170 ++-- Matrix-1.3-3/Matrix/NAMESPACE | 1 Matrix-1.3-3/Matrix/R/AllClass.R | 12 Matrix-1.3-3/Matrix/R/Auxiliaries.R | 12 Matrix-1.3-3/Matrix/R/Csparse.R | 2 Matrix-1.3-3/Matrix/R/Math.R | 4 Matrix-1.3-3/Matrix/R/Matrix.R | 28 Matrix-1.3-3/Matrix/R/Ops.R | 52 - Matrix-1.3-3/Matrix/R/Rsparse.R | 10 Matrix-1.3-3/Matrix/R/diagMatrix.R | 23 Matrix-1.3-3/Matrix/R/dtCMatrix.R | 20 Matrix-1.3-3/Matrix/R/spModels.R | 1 Matrix-1.3-3/Matrix/R/sparseVector.R | 4 Matrix-1.3-3/Matrix/R/zzz.R | 41 - Matrix-1.3-3/Matrix/TODO | 12 Matrix-1.3-3/Matrix/build/partial.rdb |binary Matrix-1.3-3/Matrix/build/vignette.rds |binary Matrix-1.3-3/Matrix/inst/NEWS.Rd | 70 ++ Matrix-1.3-3/Matrix/inst/doc/Comparisons.pdf |binary Matrix-1.3-3/Matrix/inst/doc/Design-issues.pdf |binary Matrix-1.3-3/Matrix/inst/doc/Intro2Matrix.R | 4 Matrix-1.3-3/Matrix/inst/doc/Intro2Matrix.Rnw | 7 Matrix-1.3-3/Matrix/inst/doc/Intro2Matrix.pdf |binary Matrix-1.3-3/Matrix/inst/doc/Introduction.pdf |binary Matrix-1.3-3/Matrix/inst/doc/sparseModels.R | 4 Matrix-1.3-3/Matrix/inst/doc/sparseModels.Rnw | 4 Matrix-1.3-3/Matrix/inst/doc/sparseModels.pdf |binary Matrix-1.3-3/Matrix/inst/external/jgl009.mtx |only Matrix-1.3-3/Matrix/inst/include/Matrix_stubs.c | 3 Matrix-1.3-3/Matrix/inst/include/cholmod.h | 267 ++++--- Matrix-1.3-3/Matrix/inst/po/de/LC_MESSAGES/Matrix.mo |binary Matrix-1.3-3/Matrix/inst/po/de/LC_MESSAGES/R-Matrix.mo |binary Matrix-1.3-3/Matrix/inst/po/en@quot/LC_MESSAGES/Matrix.mo |binary Matrix-1.3-3/Matrix/inst/po/en@quot/LC_MESSAGES/R-Matrix.mo |binary Matrix-1.3-3/Matrix/inst/po/fr/LC_MESSAGES/Matrix.mo |binary Matrix-1.3-3/Matrix/inst/po/fr/LC_MESSAGES/R-Matrix.mo |binary Matrix-1.3-3/Matrix/inst/po/it |only Matrix-1.3-3/Matrix/inst/po/ko/LC_MESSAGES/Matrix.mo |only Matrix-1.3-3/Matrix/inst/po/ko/LC_MESSAGES/R-Matrix.mo |binary Matrix-1.3-3/Matrix/inst/po/lt |only Matrix-1.3-3/Matrix/inst/po/pl/LC_MESSAGES/Matrix.mo |binary Matrix-1.3-3/Matrix/inst/po/pl/LC_MESSAGES/R-Matrix.mo |binary Matrix-1.3-3/Matrix/inst/test-tools-1.R | 3 Matrix-1.3-3/Matrix/man/RsparseMatrix-class.Rd | 10 Matrix-1.3-3/Matrix/man/Xtrct-methods.Rd | 2 Matrix-1.3-3/Matrix/man/bdiag.Rd | 2 Matrix-1.3-3/Matrix/man/cBind.Rd | 86 +- Matrix-1.3-3/Matrix/man/chol.Rd | 3 Matrix-1.3-3/Matrix/man/dtCMatrix-class.Rd | 1 Matrix-1.3-3/Matrix/man/expand.Rd | 1 Matrix-1.3-3/Matrix/man/externalFormats.Rd | 5 Matrix-1.3-3/Matrix/man/indMatrix-class.Rd | 4 Matrix-1.3-3/Matrix/man/isTriangular.Rd | 2 Matrix-1.3-3/Matrix/man/matrix-products.Rd | 4 Matrix-1.3-3/Matrix/man/qr-methods.Rd | 25 Matrix-1.3-3/Matrix/man/rankMatrix.Rd | 3 Matrix-1.3-3/Matrix/man/sparseMatrix-class.Rd | 8 Matrix-1.3-3/Matrix/po/Matrix.pot | 61 - Matrix-1.3-3/Matrix/po/R-Matrix.pot | 19 Matrix-1.3-3/Matrix/po/R-de.po | 21 Matrix-1.3-3/Matrix/po/R-fr.po | 420 ++++-------- Matrix-1.3-3/Matrix/po/R-it.po |only Matrix-1.3-3/Matrix/po/R-ko.po | 20 Matrix-1.3-3/Matrix/po/R-lt.po |only Matrix-1.3-3/Matrix/po/R-pl.po | 22 Matrix-1.3-3/Matrix/po/de.po | 78 +- Matrix-1.3-3/Matrix/po/fr.po | 336 +++------ Matrix-1.3-3/Matrix/po/it.po |only Matrix-1.3-3/Matrix/po/ko.po | 65 + Matrix-1.3-3/Matrix/po/lt.po |only Matrix-1.3-3/Matrix/po/pl.po | 71 +- Matrix-1.3-3/Matrix/po/update-me.sh | 4 Matrix-1.3-3/Matrix/src/Mutils.c | 21 Matrix-1.3-3/Matrix/src/Mutils.h | 1 Matrix-1.3-3/Matrix/src/dtrMatrix.c | 5 Matrix-1.3-3/Matrix/src/init.c | 1 Matrix-1.3-3/Matrix/tests/Class+Meth.R | 12 Matrix-1.3-3/Matrix/tests/Simple.R | 20 Matrix-1.3-3/Matrix/tests/bind.R | 126 +-- Matrix-1.3-3/Matrix/tests/bind.Rout.save | 159 ++-- Matrix-1.3-3/Matrix/tests/factorizing.R | 21 Matrix-1.3-3/Matrix/tests/group-methods.R | 11 Matrix-1.3-3/Matrix/tests/indexing.R | 68 + Matrix-1.3-3/Matrix/tests/indexing.Rout.save | 105 ++- Matrix-1.3-3/Matrix/tests/validObj.R | 5 Matrix-1.3-3/Matrix/vignettes/Intro2Matrix.Rnw | 7 Matrix-1.3-3/Matrix/vignettes/sparseModels.Rnw | 4 90 files changed, 1428 insertions(+), 1175 deletions(-)
Title: Hartigan's Dip Test Statistic for Unimodality - Corrected
Description: Compute Hartigan's dip test statistic for unimodality /
multimodality and provide a test with simulation based p-values, where
the original public code has been corrected.
Author: Martin Maechler (originally from Fortran and S-plus by Dario Ringach, NYU.edu)
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between diptest versions 0.75-7 dated 2015-06-08 and 0.76-0 dated 2021-05-04
diptest-0.75-7/diptest/inst/doc/diptest.bib |only diptest-0.75-7/diptest/inst/doc/myVignette.sty |only diptest-0.76-0/diptest/DESCRIPTION | 16 ++++++---- diptest-0.76-0/diptest/MD5 | 27 ++++++++--------- diptest-0.76-0/diptest/NAMESPACE | 9 +++++ diptest-0.76-0/diptest/R/dip.R | 3 + diptest-0.76-0/diptest/README.md |only diptest-0.76-0/diptest/TODO | 7 ++-- diptest-0.76-0/diptest/build/vignette.rds |binary diptest-0.76-0/diptest/inst/NEWS.Rd | 32 +++++++++++++++------ diptest-0.76-0/diptest/inst/doc/diptest-issues.Rnw | 23 +++++++-------- diptest-0.76-0/diptest/inst/doc/diptest-issues.pdf |binary diptest-0.76-0/diptest/man/dip.Rd | 3 + diptest-0.76-0/diptest/man/dip.test.Rd | 3 + diptest-0.76-0/diptest/src/dip.c | 1 diptest-0.76-0/diptest/tests/ex1.Rout.save | 7 +--- 16 files changed, 80 insertions(+), 51 deletions(-)
Title: Judd, McClelland, & Ryan Formatting for ANOVA Output
Description: Produces ANOVA tables in the format used by Judd, McClelland, and Ryan
(2017, ISBN: 978-1138819832) in their introductory textbook, Data Analysis. This includes
proportional reduction in error and formatting to improve ease the transition between the book
and R.
Author: Adam Blake [aut] (<https://orcid.org/0000-0001-7881-8652>),
Jeff Chrabaszcz [aut],
Ji Son [aut] (<https://orcid.org/0000-0002-4258-4791>),
Jim Stigler [cre, aut] (<https://orcid.org/0000-0001-6107-7827>)
Maintainer: Jim Stigler <jstigler@gmail.com>
Diff between supernova versions 2.3.0 dated 2021-01-12 and 2.4.0 dated 2021-05-04
supernova-2.3.0/supernova/R/update.R |only supernova-2.3.0/supernova/tests/testthat/Rplots.pdf |only supernova-2.3.0/supernova/tests/testthat/test-pad.R |only supernova-2.3.0/supernova/tests/testthat/test-resolve_type.R |only supernova-2.3.0/supernova/tests/testthat/test-update.R |only supernova-2.4.0/supernova/DESCRIPTION | 37 supernova-2.4.0/supernova/MD5 | 130 supernova-2.4.0/supernova/NAMESPACE | 49 supernova-2.4.0/supernova/NEWS.md | 144 - supernova-2.4.0/supernova/R/data.R |only supernova-2.4.0/supernova/R/equation.R | 46 supernova-2.4.0/supernova/R/generate_models.R | 422 ++- supernova-2.4.0/supernova/R/listwise_delete.R |only supernova-2.4.0/supernova/R/number.R |only supernova-2.4.0/supernova/R/pairwise.R |only supernova-2.4.0/supernova/R/supernova.R | 288 +- supernova-2.4.0/supernova/R/utils-formula.R | 277 +- supernova-2.4.0/supernova/R/utils.R | 61 supernova-2.4.0/supernova/R/value_extraction.R | 189 - supernova-2.4.0/supernova/R/variables.R | 28 supernova-2.4.0/supernova/README.md | 1311 +++++----- supernova-2.4.0/supernova/data/class_data.rda |only supernova-2.4.0/supernova/inst/WORDLIST | 27 supernova-2.4.0/supernova/man/Fingers.Rd | 55 supernova-2.4.0/supernova/man/Servers.Rd | 29 supernova-2.4.0/supernova/man/Survey.Rd | 25 supernova-2.4.0/supernova/man/Tables.Rd | 29 supernova-2.4.0/supernova/man/TipExperiment.Rd | 29 supernova-2.4.0/supernova/man/check_pairwise_args.Rd |only supernova-2.4.0/supernova/man/class_data.Rd |only supernova-2.4.0/supernova/man/df.Rd |only supernova-2.4.0/supernova/man/drop_term.Rd |only supernova-2.4.0/supernova/man/estimate_extraction.Rd | 46 supernova-2.4.0/supernova/man/figures/README-samp_dist_of_b1-1.png |binary supernova-2.4.0/supernova/man/figures/README-samp_dist_of_hp_coef-1.png |binary supernova-2.4.0/supernova/man/figures/README-unnamed-chunk-24-1.png |only supernova-2.4.0/supernova/man/find_categorical_vars.Rd |only supernova-2.4.0/supernova/man/formula_building.Rd | 6 supernova-2.4.0/supernova/man/formula_extraction.Rd | 26 supernova-2.4.0/supernova/man/formula_string.Rd |only supernova-2.4.0/supernova/man/frm_remove.Rd |only supernova-2.4.0/supernova/man/frm_string.Rd |only supernova-2.4.0/supernova/man/generate_models.Rd | 114 supernova-2.4.0/supernova/man/level_pairs.Rd |only supernova-2.4.0/supernova/man/listwise_delete.Rd |only supernova-2.4.0/supernova/man/lower_tri.Rd |only supernova-2.4.0/supernova/man/means_and_counts.Rd |only supernova-2.4.0/supernova/man/new_pairwise_tbl.Rd |only supernova-2.4.0/supernova/man/number.Rd |only supernova-2.4.0/supernova/man/pairwise.Rd |only supernova-2.4.0/supernova/man/paste_line.Rd |only supernova-2.4.0/supernova/man/refit_categorical.Rd |only supernova-2.4.0/supernova/man/rename.Rd |only supernova-2.4.0/supernova/man/row_blank.Rd |only supernova-2.4.0/supernova/man/row_error.Rd |only supernova-2.4.0/supernova/man/row_term.Rd |only supernova-2.4.0/supernova/man/select_terms.Rd |only supernova-2.4.0/supernova/man/supernova-vctrs.Rd |only supernova-2.4.0/supernova/man/supernova.Rd | 30 supernova-2.4.0/supernova/man/update_in_env.Rd |only supernova-2.4.0/supernova/tests/figs |only supernova-2.4.0/supernova/tests/testthat.R | 14 supernova-2.4.0/supernova/tests/testthat/_snaps |only supernova-2.4.0/supernova/tests/testthat/cache/model_cache_type_1.Rds |binary supernova-2.4.0/supernova/tests/testthat/cache/model_cache_type_2.Rds |binary supernova-2.4.0/supernova/tests/testthat/cache/model_cache_type_3.Rds |binary supernova-2.4.0/supernova/tests/testthat/data/jmr_ex11.1.Rds |binary supernova-2.4.0/supernova/tests/testthat/data/jmr_ex11.17.Rds |binary supernova-2.4.0/supernova/tests/testthat/data/jmr_ex11.22.Rds |binary supernova-2.4.0/supernova/tests/testthat/data/jmr_ex11.9.Rds |binary supernova-2.4.0/supernova/tests/testthat/test-equation.R | 25 supernova-2.4.0/supernova/tests/testthat/test-generate_models.R | 553 +--- supernova-2.4.0/supernova/tests/testthat/test-listwise_delete.R |only supernova-2.4.0/supernova/tests/testthat/test-number.R |only supernova-2.4.0/supernova/tests/testthat/test-pairwise.R |only supernova-2.4.0/supernova/tests/testthat/test-print.supernova.R | 11 supernova-2.4.0/supernova/tests/testthat/test-supernova.lmerMod.R | 332 +- supernova-2.4.0/supernova/tests/testthat/test-supernova.r | 222 - supernova-2.4.0/supernova/tests/testthat/test-utils-formula.R |only supernova-2.4.0/supernova/tests/testthat/test-utils.R |only supernova-2.4.0/supernova/tests/testthat/test-value_extraction.r | 57 supernova-2.4.0/supernova/tests/testthat/test-variables.R | 10 82 files changed, 2581 insertions(+), 2041 deletions(-)
Title: Value American and Real Options Through LSM Simulation
Description: The least-squares Monte Carlo (LSM) simulation method is a popular method for the approximation of the value of early and multiple exercise options. 'LSMRealOptions' provides implementations of the LSM simulation method to value American option products and capital investment projects through real options analysis. 'LSMRealOptions' values capital investment projects with cash flows dependent upon underlying state variables that are stochastically evolving, providing analysis into the timing and critical values at which investment is optimal. 'LSMRealOptions' provides flexibility in the stochastic processes followed by underlying assets, the number of state variables, basis functions and underlying asset characteristics to allow a broad range of assets to be valued through the LSM simulation method. Real options projects are further able to be valued whilst considering construction periods, time-varying initial capital expenditures and path-dependent operational flexibility including the ability to temporarily shutdown or permanently abandon projects after initial investment has occurred. The LSM simulation method was first presented in the prolific work of Longstaff and Schwartz (2001) <doi:10.1093/rfs/14.1.113>.
Author: Thomas Aspinall [aut, cre] (<https://orcid.org/0000-0002-6968-1989>),
Adrian Gepp [aut] (<https://orcid.org/0000-0003-1666-5501>),
Geoff Harris [aut] (<https://orcid.org/0000-0003-4284-8619>),
Simone Kelly [aut] (<https://orcid.org/0000-0002-6528-8557>),
Colette Southam [aut] (<https://orcid.org/0000-0001-7263-2347>),
Bruce Vanstone [aut] (<https://orcid.org/0000-0002-3977-2468>)
Maintainer: Thomas Aspinall <tomaspinall2512@gmail.com>
Diff between LSMRealOptions versions 0.1.0 dated 2021-01-21 and 0.2.0 dated 2021-05-04
LSMRealOptions-0.1.0/LSMRealOptions/R/American-Options.R |only LSMRealOptions-0.1.0/LSMRealOptions/R/GBM-Simulate.R |only LSMRealOptions-0.1.0/LSMRealOptions/R/Real-Options-OF.R |only LSMRealOptions-0.1.0/LSMRealOptions/R/Real-Options.R |only LSMRealOptions-0.2.0/LSMRealOptions/DESCRIPTION | 10 LSMRealOptions-0.2.0/LSMRealOptions/MD5 | 48 LSMRealOptions-0.2.0/LSMRealOptions/NAMESPACE | 6 LSMRealOptions-0.2.0/LSMRealOptions/NEWS.md | 5 LSMRealOptions-0.2.0/LSMRealOptions/R/LSM_american_option.R |only LSMRealOptions-0.2.0/LSMRealOptions/R/LSM_real_option.R |only LSMRealOptions-0.2.0/LSMRealOptions/R/LSM_real_option_OF.R |only LSMRealOptions-0.2.0/LSMRealOptions/R/SDE_simulate.R |only LSMRealOptions-0.2.0/LSMRealOptions/R/deprecated_functions.R |only LSMRealOptions-0.2.0/LSMRealOptions/build/vignette.rds |binary LSMRealOptions-0.2.0/LSMRealOptions/inst/doc/LSMRealOptions.R | 193 +- LSMRealOptions-0.2.0/LSMRealOptions/inst/doc/LSMRealOptions.Rmd | 229 +- LSMRealOptions-0.2.0/LSMRealOptions/inst/doc/LSMRealOptions.html | 887 +++------- LSMRealOptions-0.2.0/LSMRealOptions/man/GBM.Simulate.Rd | 46 LSMRealOptions-0.2.0/LSMRealOptions/man/GBM_simulate.Rd |only LSMRealOptions-0.2.0/LSMRealOptions/man/GOU_simulate.Rd |only LSMRealOptions-0.2.0/LSMRealOptions/man/IGBM_simulate.Rd |only LSMRealOptions-0.2.0/LSMRealOptions/man/LSM.AmericanOption.Rd | 109 - LSMRealOptions-0.2.0/LSMRealOptions/man/LSM.RealOption.OF.Rd | 216 -- LSMRealOptions-0.2.0/LSMRealOptions/man/LSM.RealOption.Rd | 135 - LSMRealOptions-0.2.0/LSMRealOptions/man/LSM_american_option.Rd |only LSMRealOptions-0.2.0/LSMRealOptions/man/LSM_real_option.Rd |only LSMRealOptions-0.2.0/LSMRealOptions/man/LSM_real_option_OF.Rd |only LSMRealOptions-0.2.0/LSMRealOptions/man/figures |only LSMRealOptions-0.2.0/LSMRealOptions/vignettes/LSMRealOptions.Rmd | 229 +- 29 files changed, 801 insertions(+), 1312 deletions(-)
More information about LSMRealOptions at CRAN
Permanent link
Title: Fast Kalman Filtering Through Sequential Processing
Description: Fast and flexible Kalman filtering implementation utilizing sequential processing, designed for efficient parameter estimation through maximum likelihood estimation. Sequential processing is a univariate treatment of a multivariate series of observations and can benefit from computational efficiency over traditional Kalman filtering when independence is assumed in the variance of the disturbances of the measurement equation. Sequential processing is described in the textbook of Durbin and Koopman (2001, ISBN:978-0-19-964117-8). 'FKF.SP' was built upon the existing 'FKF' package and is, in general, a faster Kalman filter.
Author: Thomas Aspinall [aut, cre] (<https://orcid.org/0000-0002-6968-1989>),
Adrian Gepp [aut] (<https://orcid.org/0000-0003-1666-5501>),
Geoff Harris [aut] (<https://orcid.org/0000-0003-4284-8619>),
Simone Kelly [aut] (<https://orcid.org/0000-0002-6528-8557>),
Colette Southam [aut] (<https://orcid.org/0000-0001-7263-2347>),
Bruce Vanstone [aut] (<https://orcid.org/0000-0002-3977-2468>),
David Luethi [ctb],
Philipp Erb [ctb],
Simon Otziger [ctb],
Paul Smith [ctb] (<https://orcid.org/0000-0002-0034-3412>)
Maintainer: Thomas Aspinall <tomaspinall2512@gmail.com>
Diff between FKF.SP versions 0.1.1 dated 2021-01-29 and 0.1.2 dated 2021-05-04
DESCRIPTION | 7 MD5 | 16 - NEWS.md | 5 build/FKF.SP.pdf |binary build/vignette.rds |binary inst/doc/FKFSP.R | 39 +- inst/doc/FKFSP.Rmd | 39 +- inst/doc/FKFSP.html | 814 +++++++++++++++++++--------------------------------- vignettes/FKFSP.Rmd | 39 +- 9 files changed, 386 insertions(+), 573 deletions(-)
Title: Asynchronous Disk-Based Representation of Massive Data
Description: Storing very large data objects on a local drive, while still making it possible to manipulate the data in an efficient manner.
Author: Adam Black [aut, cre],
Martijn Schuemie [aut],
Marc A. Suchard [aut],
Observational Health Data Science and Informatics [cph]
Maintainer: Adam Black <black@ohdsi.org>
Diff between Andromeda versions 0.4.0 dated 2020-10-30 and 0.4.1 dated 2021-05-04
DESCRIPTION | 16 +++++++++------- MD5 | 12 ++++++------ NEWS.md | 7 +++++++ build/vignette.rds |binary inst/doc/UsingAndromeda.pdf |binary man/Andromeda-package.Rd | 3 ++- tests/testthat/test-loadingSaving.R | 27 ++++++++++++++------------- 7 files changed, 38 insertions(+), 27 deletions(-)
More information about TriDimRegression at CRAN
Permanent link
Title: Testing in Conditional Likelihood Context
Description: An implementation of hypothesis testing in an extended Rasch modelling framework,
including sample size planning procedures and power computations. Provides 4 statistical tests,
i.e., gradient test (GR), likelihood ratio test (LR), Rao score or Lagrange multiplier test (RS),
and Wald test, for testing a number of hypotheses referring to the Rasch model (RM), linear
logistic test model (LLTM), rating scale model (RSM), and partial credit model (PCM). Three
types of functions for power and sample size computations are provided. Firstly, functions to
compute the sample size given a user-specified (predetermined) deviation from the hypothesis
to be tested, the level alpha, and the power of the test. Secondly, functions to evaluate the
power of the tests given a user-specified (predetermined) deviation from the hypothesis to be
tested, the level alpha of the test, and the sample size. Thirdly, functions to evaluate the
so-called post hoc power of the tests. This is the power of the tests given the observed
deviation of the data from the hypothesis to be tested and a user-specified level alpha of the
test. Power and sample size computations are based on a Monte Carlo simulation approach. It is
computationally very efficient. The variance of the random error in computing power and sample
size arising from the simulation approach is analytically derived by using the delta method.
Draxler, C., & Alexandrowicz, R. W. (2015), <doi:10.1007/s11336-015-9472-y>.
Author: Clemens Draxler [aut, cre],
Andreas Kurz [aut]
Maintainer: Clemens Draxler <clemens.draxler@umit.at>
Diff between tcl versions 0.1.0 dated 2019-09-20 and 0.1.1 dated 2021-05-04
tcl-0.1.0/tcl/R/tcl_LRtest.RM.R |only tcl-0.1.0/tcl/README.md |only tcl-0.1.0/tcl/inst/doc/tcl.Rnw |only tcl-0.1.0/tcl/inst/doc/tcl.pdf |only tcl-0.1.0/tcl/vignettes/tcl.Rnw |only tcl-0.1.1/tcl/DESCRIPTION | 37 +++++--- tcl-0.1.1/tcl/MD5 | 59 +++++++++---- tcl-0.1.1/tcl/NAMESPACE | 9 ++ tcl-0.1.1/tcl/R/LLTM_test.R | 23 ++--- tcl-0.1.1/tcl/R/LLTM_test_obj.R |only tcl-0.1.1/tcl/R/change_test.R | 24 ++--- tcl-0.1.1/tcl/R/eRm_cml.R | 2 tcl-0.1.1/tcl/R/invar_test.R | 135 ++++++++----------------------- tcl-0.1.1/tcl/R/invar_test_obj.R |only tcl-0.1.1/tcl/R/post_hocChange.R |only tcl-0.1.1/tcl/R/post_hocPCM.R |only tcl-0.1.1/tcl/R/post_hocRM.R |only tcl-0.1.1/tcl/R/powerChange.R |only tcl-0.1.1/tcl/R/powerPCM.R |only tcl-0.1.1/tcl/R/powerRM.R |only tcl-0.1.1/tcl/R/sa_sizeChange.R |only tcl-0.1.1/tcl/R/sa_sizePCM.R |only tcl-0.1.1/tcl/R/sa_sizeRM.R |only tcl-0.1.1/tcl/R/tcl_datcheck.R |only tcl-0.1.1/tcl/R/tcl_hessian.R | 3 tcl-0.1.1/tcl/R/tcl_scorefun.R | 8 + tcl-0.1.1/tcl/R/tcl_splitcr.R |only tcl-0.1.1/tcl/build/vignette.rds |binary tcl-0.1.1/tcl/inst/doc/tcl-vignette.R |only tcl-0.1.1/tcl/inst/doc/tcl-vignette.Rmd |only tcl-0.1.1/tcl/inst/doc/tcl-vignette.html |only tcl-0.1.1/tcl/man/LLTM_test.Rd | 20 ++-- tcl-0.1.1/tcl/man/change_test.Rd | 23 ++--- tcl-0.1.1/tcl/man/invar_test.Rd | 29 +++--- tcl-0.1.1/tcl/man/post_hocChange.Rd |only tcl-0.1.1/tcl/man/post_hocPCM.Rd |only tcl-0.1.1/tcl/man/post_hocRM.Rd |only tcl-0.1.1/tcl/man/powerChange.Rd |only tcl-0.1.1/tcl/man/powerPCM.Rd |only tcl-0.1.1/tcl/man/powerRM.Rd |only tcl-0.1.1/tcl/man/sa_sizeChange.Rd |only tcl-0.1.1/tcl/man/sa_sizePCM.Rd |only tcl-0.1.1/tcl/man/sa_sizeRM.Rd |only tcl-0.1.1/tcl/man/tcl_hessian.Rd | 3 tcl-0.1.1/tcl/man/tcl_scorefun.Rd | 6 - tcl-0.1.1/tcl/vignettes/tcl-vignette.Rmd |only 46 files changed, 187 insertions(+), 194 deletions(-)
Title: Parallel Programming Tools for 'Rcpp'
Description: High level functions for parallel programming with 'Rcpp'.
For example, the 'parallelFor()' function can be used to convert the work of
a standard serial "for" loop into a parallel one and the 'parallelReduce()'
function can be used for accumulating aggregate or other values.
Author: JJ Allaire [aut],
Romain Francois [aut, cph],
Kevin Ushey [aut, cre],
Gregory Vandenbrouck [aut],
Marcus Geelnard [aut, cph] (TinyThread library,
https://tinythreadpp.bitsnbites.eu/),
Hamada S. Badr [ctb] (<https://orcid.org/0000-0002-9808-2344>),
RStudio [cph],
Intel [aut, cph] (Intel TBB library,
https://www.threadingbuildingblocks.org/),
Microsoft [cph]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between RcppParallel versions 5.1.3 dated 2021-05-03 and 5.1.4 dated 2021-05-04
DESCRIPTION | 6 +- MD5 | 128 ++++++++++++++++++++++++++++++++++++++++++-- NEWS.md | 5 + R/utils.R | 11 ++- inst/include/serial |only inst/include/tbb |only man/RcppParallel-package.Rd | 2 tools/config/configure.R | 23 +++++++ 8 files changed, 161 insertions(+), 14 deletions(-)
Title: Distributions for Ecological Models in 'nimble'
Description: Common ecological distributions for 'nimble' models in the form of nimbleFunction objects.
Includes Cormack-Jolly-Seber, occupancy, dynamic occupancy, hidden Markov, dynamic hidden Markov, and N-mixture models.
(Jolly (1965) <DOI: 10.2307/2333826>, Seber (1965) <DOI: 10.2307/2333827>, Turek et al. (2016) <doi:10.1007/s10651-016-0353-z>).
Author: Benjamin R. Goldstein [aut, cre],
Daniel Turek [aut],
Lauren Ponisio [aut],
Perry de Valpine [aut]
Maintainer: Benjamin R. Goldstein <ben.goldstein@berkeley.edu>
Diff between nimbleEcology versions 0.3.1 dated 2020-09-25 and 0.4.0 dated 2021-05-04
DESCRIPTION | 14 MD5 | 62 NAMESPACE | 132 - R/dBetaBinom.R |only R/dCJS.R | 896 +++--- R/dDHMM.R | 939 +++---- R/dDynOcc.R | 2328 +++++++++--------- R/dHMM.R | 882 +++--- R/dNmixture.R | 1509 +++++++++-- R/dOcc.R | 378 +- R/utils.R |only R/zzz.R | 851 ++++-- README.md | 34 build/vignette.rds |binary inst/CITATION | 96 inst/NEWS | 64 inst/doc/Introduction_to_nimbleEcology.R | 190 - inst/doc/Introduction_to_nimbleEcology.Rmd | 962 +++---- inst/doc/Introduction_to_nimbleEcology.html | 1546 ++++++------ man/dBetaBinom.Rd |only man/dCJS.Rd | 322 +- man/dDHMM.Rd | 385 +- man/dDynOcc.Rd | 530 ++-- man/dHMM.Rd | 384 +- man/dNmixture.Rd | 473 ++- man/dOcc.Rd | 272 +- man/nimNmixPois_logFac.Rd |only tests/testthat/test-CJS.R | 1042 ++++---- tests/testthat/test-DHMM.R | 1356 +++++----- tests/testthat/test-DynOcc.R | 3596 ++++++++++++++-------------- tests/testthat/test-HMM.R | 1308 +++++----- tests/testthat/test-Nmixture.R | 1747 +++++++++++-- tests/testthat/test-Occ.R | 456 +-- vignettes/Introduction_to_nimbleEcology.Rmd | 962 +++---- 34 files changed, 13104 insertions(+), 10612 deletions(-)
Title: Meridional and Parallel Lines for Maps
Description: Create graticule lines and labels for maps. Control the creation
of lines by setting their placement (at particular meridians and parallels)
and extent (along parallels and meridians). Labels are created independently of
lines.
Author: Michael D. Sumner [aut, cre]
Maintainer: Michael D. Sumner <mdsumner@gmail.com>
Diff between graticule versions 0.1.2 dated 2016-02-02 and 0.1.6 dated 2021-05-04
graticule-0.1.2/graticule/ChangeLog |only graticule-0.1.2/graticule/NEWS |only graticule-0.1.2/graticule/inst/polymesh.R |only graticule-0.1.6/graticule/DESCRIPTION | 14 graticule-0.1.6/graticule/MD5 | 42 graticule-0.1.6/graticule/NAMESPACE | 56 graticule-0.1.6/graticule/NEWS.md |only graticule-0.1.6/graticule/R/graticule.R | 402 ++-- graticule-0.1.6/graticule/R/graticule2.R |only graticule-0.1.6/graticule/R/pathos.R | 81 graticule-0.1.6/graticule/R/utils.R | 16 graticule-0.1.6/graticule/R/zzz.R |only graticule-0.1.6/graticule/README.md | 121 + graticule-0.1.6/graticule/build/vignette.rds |binary graticule-0.1.6/graticule/inst/doc/graticule.R | 319 ++- graticule-0.1.6/graticule/inst/doc/graticule.Rmd | 536 +++-- graticule-0.1.6/graticule/inst/doc/graticule.html | 900 ++++++---- graticule-0.1.6/graticule/inst/extdata/getice.R | 6 graticule-0.1.6/graticule/man/graticule.Rd | 146 - graticule-0.1.6/graticule/man/graticule_labels.Rd | 71 graticule-0.1.6/graticule/man/pathologicule.Rd | 80 graticule-0.1.6/graticule/tests/testthat.R | 4 graticule-0.1.6/graticule/tests/testthat/test-no-longitude-warnings.R |only graticule-0.1.6/graticule/tests/testthat/test-tiles.R |only graticule-0.1.6/graticule/tests/testthat/testgraticule.R | 26 graticule-0.1.6/graticule/vignettes/graticule.Rmd | 536 +++-- 26 files changed, 1974 insertions(+), 1382 deletions(-)
More information about DockerParallel at CRAN
Permanent link
Title: A GeoJson Processing Toolkit
Description: Includes functions for processing GeoJson objects <https://en.wikipedia.org/wiki/GeoJSON> relying on 'RFC 7946' <https://tools.ietf.org/pdf/rfc7946.pdf>. The geojson encoding is based on 'json11', a tiny JSON library for 'C++11' <https://github.com/dropbox/json11>. Furthermore, the source code is exported in R through the 'Rcpp' and 'RcppArmadillo' packages.
Author: Lampros Mouselimis [aut, cre] (<https://orcid.org/0000-0002-8024-1546>),
Dropbox Inc [cph]
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between geojsonR versions 1.0.9 dated 2021-03-07 and 1.1.0 dated 2021-05-04
DESCRIPTION | 15 ++++++++------- MD5 | 20 ++++++++++++++++---- NEWS.md | 5 +++++ README.md | 1 - inst/CITATION |only inst/doc/the_geojsonR_package.html | 4 ++-- tests |only 7 files changed, 31 insertions(+), 14 deletions(-)
Title: The Extreme Learning Machine Algorithm
Description: Training and predict functions for Single Hidden-layer Feedforward Neural Networks (SLFN) using the Extreme Learning Machine (ELM) algorithm. The ELM algorithm differs from the traditional gradient-based algorithms for very short training times (it doesn't need any iterative tuning, this makes learning time very fast) and there is no need to set any other parameters like learning rate, momentum, epochs, etc. This is a reimplementation of the 'elmNN' package using 'RcppArmadillo' after the 'elmNN' package was archived. For more information, see "Extreme learning machine: Theory and applications" by Guang-Bin Huang, Qin-Yu Zhu, Chee-Kheong Siew (2006), Elsevier B.V, <doi:10.1016/j.neucom.2005.12.126>.
Author: Lampros Mouselimis [aut, cre] (<https://orcid.org/0000-0002-8024-1546>),
Alberto Gosso [aut]
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between elmNNRcpp versions 1.0.2 dated 2020-06-13 and 1.0.3 dated 2021-05-04
DESCRIPTION | 15 ++++++-------- MD5 | 11 +++++----- NEWS.md | 5 ++++ README.md | 1 inst/CITATION |only inst/doc/extreme_learning_machine.html | 34 +++++++++++++++++++++++++++++---- src/utils.cpp | 13 +++++++++--- 7 files changed, 59 insertions(+), 20 deletions(-)
Title: Capture-Recapture Estimation using Bayesian Model Averaging
Description: Performs Bayesian model averaging for capture-recapture. This includes code to stratify records, check the strata for suitable overlap to be used for capture-recapture, and some functions to plot the estimated population size.
Author: James Johndrow [aut],
Kristian Lum [aut],
Patrick Ball [aut],
Olivier Binette [ctb, cre]
Maintainer: Olivier Binette <olivier.binette@gmail.com>
Diff between dga versions 1.2 dated 2015-04-16 and 2.0.0 dated 2021-05-04
dga-1.2/dga/man/makeAdjMatrix.Rd |only dga-1.2/dga/man/tmpfun.Rd |only dga-2.0.0/dga/DESCRIPTION | 27 + dga-2.0.0/dga/MD5 | 66 ++-- dga-2.0.0/dga/NAMESPACE | 13 dga-2.0.0/dga/NEWS.md |only dga-2.0.0/dga/R/BMAfunctions.R | 418 ++++++++++++++++------------ dga-2.0.0/dga/R/RcppExports.R |only dga-2.0.0/dga/R/data.R |only dga-2.0.0/dga/R/dga-package.R |only dga-2.0.0/dga/R/stratify_functions.R | 350 ++++++++++++++++------- dga-2.0.0/dga/R/venn_functions.R | 438 +++++++++++++++++++++--------- dga-2.0.0/dga/README.md | 53 +++ dga-2.0.0/dga/man/CompLogML.Rd | 62 ++-- dga-2.0.0/dga/man/MakeCompMatrix.Rd | 61 +--- dga-2.0.0/dga/man/bma.cr.Rd | 116 +++++-- dga-2.0.0/dga/man/cfunction.Rd | 37 +- dga-2.0.0/dga/man/check.strata.Rd | 61 ++-- dga-2.0.0/dga/man/circle.Rd | 42 +- dga-2.0.0/dga/man/circle.ind.Rd | 42 +- dga-2.0.0/dga/man/dga-package.Rd | 137 +++++---- dga-2.0.0/dga/man/ellipse.Rd | 44 +-- dga-2.0.0/dga/man/ellipse.ind.Rd | 50 +-- dga-2.0.0/dga/man/graphs3.Rd | 17 - dga-2.0.0/dga/man/graphs4.Rd | 15 - dga-2.0.0/dga/man/graphs5.Rd | 16 - dga-2.0.0/dga/man/integer.base.b.Rd | 59 +--- dga-2.0.0/dga/man/make.strata.Rd | 145 ++++++--- dga-2.0.0/dga/man/plotPosteriorN.Rd | 74 ++--- dga-2.0.0/dga/man/remove.close.Rd | 41 +- dga-2.0.0/dga/man/remove.close.ellipse.Rd | 47 +-- dga-2.0.0/dga/man/sfunction.Rd | 33 +- dga-2.0.0/dga/man/venn3.Rd | 60 ++-- dga-2.0.0/dga/man/venn4.Rd | 56 ++- dga-2.0.0/dga/src |only dga-2.0.0/dga/tests |only 36 files changed, 1584 insertions(+), 996 deletions(-)
Title: A Toolbox for Manipulating and Assessing Colors and Palettes
Description: Carries out mapping between assorted color spaces including RGB, HSV, HLS,
CIEXYZ, CIELUV, HCL (polar CIELUV), CIELAB, and polar CIELAB.
Qualitative, sequential, and diverging color palettes based on HCL colors
are provided along with corresponding ggplot2 color scales.
Color palette choice is aided by an interactive app (with either a Tcl/Tk
or a shiny graphical user interface) and shiny apps with an HCL color picker and a
color vision deficiency emulator. Plotting functions for displaying
and assessing palettes include color swatches, visualizations of the
HCL space, and trajectories in HCL and/or RGB spectrum. Color manipulation
functions include: desaturation, lightening/darkening, mixing, and
simulation of color vision deficiencies (deutanomaly, protanomaly, tritanomaly).
Details can be found on the project web page at <https://colorspace.R-Forge.R-project.org/>
and in the accompanying scientific paper: Zeileis et al. (2020, Journal of Statistical
Software, <doi:10.18637/jss.v096.i01>).
Author: Ross Ihaka [aut],
Paul Murrell [aut] (<https://orcid.org/0000-0002-3224-8858>),
Kurt Hornik [aut] (<https://orcid.org/0000-0003-4198-9911>),
Jason C. Fisher [aut] (<https://orcid.org/0000-0001-9032-8912>),
Reto Stauffer [aut] (<https://orcid.org/0000-0002-3798-5507>),
Claus O. Wilke [aut] (<https://orcid.org/0000-0002-7470-9261>),
Claire D. McWhite [aut] (<https://orcid.org/0000-0001-7346-3047>),
Achim Zeileis [aut, cre] (<https://orcid.org/0000-0003-0918-3766>)
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between colorspace versions 2.0-0 dated 2020-11-11 and 2.0-1 dated 2021-05-04
DESCRIPTION | 14 +-- MD5 | 104 ++++++++++++------------ NAMESPACE | 1 NEWS.md | 22 ++++- R/adjust_transparency.R | 141 ++++++++++++++++++++++++++++++--- R/choose_palette.R | 4 R/cvd.R | 2 R/cvd_image.R | 2 R/demoplot.R | 2 R/desaturate.R | 2 R/divergingx_hcl.R | 2 R/hcl_color_picker.R | 2 R/hcl_palettes.R | 8 + R/hclplot.R | 2 R/lighten.R | 2 R/rainbow_hcl.R | 2 R/scale_diverging.R | 6 - R/scale_divergingx.R | 6 - R/scale_qualitative.R | 6 - R/scale_sequential.R | 6 - R/simulate_cvd.R | 2 R/specplot.R | 4 R/swatchplot.R | 2 build/partial.rdb |binary build/vignette.rds |binary demo/viridis.R | 2 inst/cvdemulator/html/appInfo.html | 2 inst/doc/colorspace.R | 4 inst/doc/colorspace.Rmd | 4 inst/doc/colorspace.html | 94 +++++++++------------- inst/doc/hcl-colors.Rnw | 4 inst/doc/hcl-colors.pdf |binary inst/hclwizard/html/R.html | 4 inst/hclwizard/html/RReg.html | 2 inst/hclwizard/html/info.html | 8 - man/adjust_transparency.Rd | 44 ++++++++-- man/choose_palette.Rd | 4 man/cvd.Rd | 2 man/cvd_emulator.Rd | 2 man/demoplot.Rd | 2 man/desaturate.Rd | 2 man/divergingx_hcl.Rd | 2 man/hcl_color_picker.Rd | 2 man/hcl_palettes.Rd | 4 man/hclplot.Rd | 2 man/lighten.Rd | 2 man/rainbow_hcl.Rd | 2 man/simulate_cvd.Rd | 2 man/specplot.Rd | 4 man/swatchplot.Rd | 2 tests/Examples/colorspace-Ex.Rout.save | 44 +++++++--- vignettes/colorspace.Rmd | 4 vignettes/hcl-colors.Rnw | 4 53 files changed, 388 insertions(+), 210 deletions(-)
Title: Gaussian Mixture Models, K-Means, Mini-Batch-Kmeans, K-Medoids
and Affinity Propagation Clustering
Description: Gaussian mixture models, k-means, mini-batch-kmeans, k-medoids and affinity propagation clustering with the option to plot, validate, predict (new data) and estimate the optimal number of clusters. The package takes advantage of 'RcppArmadillo' to speed up the computationally intensive parts of the functions. For more information, see (i) "Clustering in an Object-Oriented Environment" by Anja Struyf, Mia Hubert, Peter Rousseeuw (1997), Journal of Statistical Software, <doi:10.18637/jss.v001.i04>; (ii) "Web-scale k-means clustering" by D. Sculley (2010), ACM Digital Library, <doi:10.1145/1772690.1772862>; (iii) "Armadillo: a template-based C++ library for linear algebra" by Sanderson et al (2016), The Journal of Open Source Software, <doi:10.21105/joss.00026>; (iv) "Clustering by Passing Messages Between Data Points" by Brendan J. Frey and Delbert Dueck, Science 16 Feb 2007: Vol. 315, Issue 5814, pp. 972-976, <doi:10.1126/science.1136800>.
Author: Lampros Mouselimis [aut, cre] (<https://orcid.org/0000-0002-8024-1546>),
Conrad Sanderson [cph] (Author of the C++ Armadillo library),
Ryan Curtin [cph] (Author of the C++ Armadillo library),
Siddharth Agrawal [cph] (Author of the C code of the Mini-Batch-Kmeans
algorithm
(https://github.com/siddharth-agrawal/Mini-Batch-K-Means)),
Brendan Frey [cph] (Author of the matlab code of the Affinity
propagation algorithm (for commercial use please contact the author
of the matlab code)),
Delbert Dueck [cph] (Author of the matlab code of the Affinity
propagation algorithm)
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between ClusterR versions 1.2.3 dated 2021-05-03 and 1.2.4 dated 2021-05-04
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ inst/CITATION | 5 +++-- inst/doc/the_clusterR_package.html | 8 ++++---- 5 files changed, 18 insertions(+), 13 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-12-15 1.5.1
2013-06-27 1.5.0-71
Title: Two-Way Tests in Independent Groups Designs
Description: Performs two-way tests in independent groups designs; Parametric Bootstrap based Generalized Test and Generalized Pivotal Quantity based Generalized Test (Weerahandi and Krishnamoorthy, 2019) <doi:10.1080/03610926.2017.1419264>. The package performs descriptive statistics and graphical approaches. Moreover, it assesses variance homogeneity and normality of data in each group via tests and plots. All 'twowaytests' functions are designed for two-way layout.
Author: Osman Dag [aut, cre], Sam Weerahandi [aut], Malwane Ananda [aut]
Maintainer: Osman Dag <osman.dag@outlook.com>
Diff between twowaytests versions 1.0 dated 2020-11-25 and 1.1 dated 2021-05-04
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/descTwoWay.R | 4 +++- R/gpTwoWay.R | 4 +++- R/gplotTwoWay.R | 4 +++- R/homogtestTwoWay.R | 4 +++- R/nortestTwoWay.R | 4 +++- 7 files changed, 25 insertions(+), 15 deletions(-)
Title: Stochastic Frontier Analysis using R
Description: Maximum likelihood estimation for stochastic frontier analysis (SFA) of production
(profit) and cost functions.
The package includes several distributions for the one-sided error term (i.e. Rayleigh,
Gamma, Weibull, lognormal, uniform, generalized exponential and truncated skewed Laplace)
as well as the latent class stochastic frontier model (LCM) as described in Dakpo et al. (2021)
<doi:10.1111/1477-9552.12422>.
Several possibilities in terms of optimization algorithms are proposed.
Author: K Hervé Dakpo [aut],
Yann Desjeux [aut, cre],
Laure Latruffe [aut]
Maintainer: Yann Desjeux <yann.desjeux@inrae.fr>
Diff between sfaR versions 0.0.91 dated 2021-03-05 and 0.1.0 dated 2021-05-04
DESCRIPTION | 8 MD5 | 18 R/lcmcross-halfnormal-2Classes.R | 996 +++++------ R/lcmcross-halfnormal-3Classes.R | 1563 +++++++++--------- R/lcmcross-halfnormal-4Classes.R | 2330 +++++++++++++-------------- R/lcmcross-halfnormal-5Classes.R | 3337 +++++++++++++++++++-------------------- R/lcmcross.R | 385 +--- inst/CITATION | 4 man/efficiencies.Rd | 20 man/lcmcross.Rd | 6 10 files changed, 4349 insertions(+), 4318 deletions(-)
Title: Spatially Explicit Capture-Recapture for Linear Habitats
Description: Tools for spatially explicit capture-recapture analysis of animal populations in linear habitats, extending package 'secr'.
Author: Murray Efford
Maintainer: Murray Efford <murray.efford@otago.ac.nz>
Diff between secrlinear versions 1.1.1 dated 2017-12-12 and 1.1.4 dated 2021-05-04
secrlinear-1.1.1/secrlinear/inst/doc/secrlinear-manual.pdf |only secrlinear-1.1.4/secrlinear/DESCRIPTION | 16 - secrlinear-1.1.4/secrlinear/MD5 | 33 +-- secrlinear-1.1.4/secrlinear/NEWS | 13 + secrlinear-1.1.4/secrlinear/R/networkdistance.R | 2 secrlinear-1.1.4/secrlinear/R/read.linearmask.R | 2 secrlinear-1.1.4/secrlinear/build/vignette.rds |binary secrlinear-1.1.4/secrlinear/data/arvicola.RData |binary secrlinear-1.1.4/secrlinear/inst/CITATION | 2 secrlinear-1.1.4/secrlinear/inst/doc/secrlinear-vignette.R | 84 +++++----- secrlinear-1.1.4/secrlinear/inst/doc/secrlinear-vignette.Rmd | 40 ++-- secrlinear-1.1.4/secrlinear/inst/doc/secrlinear-vignette.pdf |binary secrlinear-1.1.4/secrlinear/man/Silverstream.Rd | 5 secrlinear-1.1.4/secrlinear/man/clipmask.Rd | 2 secrlinear-1.1.4/secrlinear/man/secrlinear-package.Rd | 6 secrlinear-1.1.4/secrlinear/man/showpath.Rd | 2 secrlinear-1.1.4/secrlinear/man/utility.Rd | 2 secrlinear-1.1.4/secrlinear/vignettes/secrlinear-vignette.Rmd | 40 ++-- 18 files changed, 130 insertions(+), 119 deletions(-)
Title: Dynamic Panel Models with Orthogonal Reparameterization of Fixed
Effects
Description: Implements the orthogonal reparameterization
approach recommended by Lancaster (2002) to estimate dynamic panel
models with fixed effects (and optionally: panel specific
intercepts). The approach uses a likelihood-based estimator and
produces estimates that are asymptotically unbiased as N goes to
infinity, with a T as low as 2.
Author: Davor Cubranic [aut],
Mark Pickup [aut, cre],
Paul Gustafson [aut],
Geoffrey Evans [aut],
Jonoska Stojkova Biljana [ctb]
Maintainer: Mark Pickup <mark.pickup@sfu.ca>
Diff between OrthoPanels versions 1.1-3 dated 2019-05-09 and 1.1-4 dated 2021-05-04
DESCRIPTION | 8 MD5 | 54 - NAMESPACE | 78 +- NEWS.md | 34 - R/OrthoPanels-package.R | 212 +++--- R/opm.R | 1284 +++++++++++++++++++------------------- R/rho.R | 508 +++++++-------- R/sample.R | 372 +++++------ build/vignette.rds |binary inst/doc/intro-opm.Rmd | 264 +++---- inst/doc/intro-opm.html | 86 +- man/BES_panel.Rd | 66 - man/DIC.Rd | 70 +- man/OrthoPanels-package.Rd | 82 +- man/abond_panel.Rd | 74 +- man/caterplot.Rd | 76 +- man/confint.opm.Rd | 72 +- man/hist.opm.Rd | 78 +- man/opm.Rd | 232 +++--- man/p_rho.Rd | 40 - man/plot.opm.Rd | 74 +- man/quantile.opm.Rd | 72 +- tests/testthat.R | 8 tests/testthat/helper-generate.R | 68 +- tests/testthat/test-orthopanels.R | 10 tests/testthat/test-rho.R | 174 ++--- tests/testthat/test-sampling.R | 136 ++-- vignettes/intro-opm.Rmd | 264 +++---- 28 files changed, 2252 insertions(+), 2244 deletions(-)
Title: A Future API for Parallel Processing using 'callr'
Description: Implementation of the Future API on top of the 'callr' package. This allows you to process futures, as defined by the 'future' package, in parallel out of the box, on your local (Linux, macOS, Windows, ...) machine. Contrary to backends relying on the 'parallel' package (e.g. 'future::multisession') and socket connections, the 'callr' backend provided here can run more than 125 parallel R processes.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future.callr versions 0.6.0 dated 2021-01-04 and 0.6.1 dated 2021-05-04
DESCRIPTION | 13 ++++++------ MD5 | 20 ++++++++++-------- NAMESPACE | 1 NEWS | 13 ++++++++++++ R/000.import.R |only R/001.bquote.R |only R/CallrFuture-class.R | 45 +++++++++++++++++++++++++++++------------- build/vignette.rds |binary inst/WORDLIST | 1 inst/doc/future.callr.html | 4 --- inst/doc/future.callr.md.rsp | 3 -- vignettes/future.callr.md.rsp | 3 -- 12 files changed, 65 insertions(+), 38 deletions(-)
Title: Ensemble Tool for Predictions from Species Distribution Models
Description: A tool which allows users to create and evaluate ensembles
of species distribution model (SDM) predictions.
Functionality is offered through R functions or a GUI (R Shiny app).
This tool can assist users in identifying spatial uncertainties and
making informed conservation and management decisions. The package is
further described in Woodman et al (2019) <doi:10.1111/2041-210X.13283>.
Author: Sam Woodman [aut, cre] (<https://orcid.org/0000-0001-6071-8186>)
Maintainer: Sam Woodman <sam.woodman@noaa.gov>
Diff between eSDM versions 0.3.5 dated 2020-09-06 and 0.3.7 dated 2021-05-04
DESCRIPTION | 6 MD5 | 204 - NAMESPACE | 101 NEWS.md | 132 R/data.R | 136 R/eSDM-internal.R | 250 - R/eSDM-package.R | 4 R/ensemble_create.R | 406 +- R/ensemble_rescale.R | 318 - R/model_abundance.R | 118 R/overlay_sdm.R | 507 +- R/pts2poly_centroids.R | 164 R/pts2poly_vertices.R | 122 build/vignette.rds |binary inst/CITATION | 40 inst/doc/example-analysis.R | 872 ++-- inst/doc/example-analysis.Rmd | 1113 ++--- inst/doc/example-analysis.html | 1972 ++++------ inst/eSDM_vignette_helper.R | 414 +- inst/extdata/Predictions_Beckeretal2016_overlaid.rds |only inst/extdata/Predictions_Hazenetal2017_overlaid.rds |only inst/extdata/README.txt | 90 inst/extdata/Shapefiles/Study_Area_CCE.shp.xml | 4 inst/extdata/Table3.csv | 22 inst/shiny/app.R | 533 +- inst/shiny/server_1_loadModels/server_1_loadModels.R | 222 - inst/shiny/server_1_loadModels/server_1_loadModels_create_local.R | 186 inst/shiny/server_1_loadModels/server_1_loadModels_csv.R | 551 +- inst/shiny/server_1_loadModels/server_1_loadModels_funcs.R | 300 - inst/shiny/server_1_loadModels/server_1_loadModels_raster.R | 268 - inst/shiny/server_1_loadModels/server_1_loadModels_renderUI.R | 684 +-- inst/shiny/server_1_loadModels/server_1_loadModels_shpgdb.R | 448 +- inst/shiny/server_1_loadModels/server_1_loadModels_shpgdb_create_local.R | 124 inst/shiny/server_2_overlay/server_2_overlay.R | 170 inst/shiny/server_2_overlay/server_2_overlay_funcs.R | 30 inst/shiny/server_2_overlay/server_2_overlay_loadPoly_csv.R | 215 - inst/shiny/server_2_overlay/server_2_overlay_loadPoly_provided.R | 42 inst/shiny/server_2_overlay/server_2_overlay_loadPoly_shpgdb.R | 284 - inst/shiny/server_2_overlay/server_2_overlay_overlayModels.R | 762 +-- inst/shiny/server_2_overlay/server_2_overlay_overlayModels_base.R | 700 +-- inst/shiny/server_2_overlay/server_2_overlay_renderUI.R | 142 inst/shiny/server_3_createEns/server_3_createEns.R | 302 - inst/shiny/server_3_createEns/server_3_createEns_create.R | 692 +-- inst/shiny/server_3_createEns/server_3_createEns_create_regexc.R | 907 ++-- inst/shiny/server_3_createEns/server_3_createEns_create_weighted.R | 386 - inst/shiny/server_3_createEns/server_3_createEns_renderUI.R | 688 +-- inst/shiny/server_4_evalMetrics/server_4_evalMetrics.R | 460 +- inst/shiny/server_4_evalMetrics/server_4_evalMetrics_funcs.R | 278 - inst/shiny/server_4_evalMetrics/server_4_evalMetrics_loadData.R | 637 +-- inst/shiny/server_4_evalMetrics/server_4_evalMetrics_renderUI.R | 360 - inst/shiny/server_5_prettyPlot/server_5_prettyPlot.R | 412 +- inst/shiny/server_5_prettyPlot/server_5_prettyPlot_addobj.R | 612 +-- inst/shiny/server_5_prettyPlot/server_5_prettyPlot_addobj_renderUI.R | 472 +- inst/shiny/server_5_prettyPlot/server_5_prettyPlot_addobj_update.R | 550 +- inst/shiny/server_5_prettyPlot/server_5_prettyPlot_download.R | 262 - inst/shiny/server_5_prettyPlot/server_5_prettyPlot_funcs.R | 254 - inst/shiny/server_5_prettyPlot/server_5_prettyPlot_plot.R | 550 +- inst/shiny/server_5_prettyPlot/server_5_prettyPlot_prep.R | 762 +-- inst/shiny/server_5_prettyPlot/server_5_prettyPlot_renderUI.R | 886 ++-- inst/shiny/server_5_prettyPlot/server_5_prettyPlot_toplot.R | 482 +- inst/shiny/server_5_prettyPlot/server_5_prettyPlot_update.R | 1054 ++--- inst/shiny/server_5_prettyPlot/server_5_prettyPlot_update_renderUI.R | 1048 ++--- inst/shiny/server_6_export/server_6_export.R | 518 +- inst/shiny/server_6_export/server_6_export_renderUI.R | 238 - inst/shiny/server_other/server_checks.R | 432 +- inst/shiny/server_other/server_funcs.R | 1013 ++--- inst/shiny/server_other/server_funcs_preview360.R | 610 +-- inst/shiny/server_other/server_plots.R | 570 +- inst/shiny/server_other/server_plots_download.R | 470 +- inst/shiny/server_other/server_plots_funcs.R | 1228 +++--- inst/shiny/server_other/server_reactiveValues.R | 308 - inst/shiny/server_other/server_render.R | 1092 ++--- inst/shiny/server_other/server_roadmap_download.R | 144 inst/shiny/server_other/server_tables.R | 172 inst/shiny/server_other/server_workspace.R | 392 - inst/shiny/ui_files/ui_0_roadmap.R | 348 - inst/shiny/ui_files/ui_1_loadModels.R | 532 +- inst/shiny/ui_files/ui_2_overlay.R | 571 +- inst/shiny/ui_files/ui_3_createEns.R | 870 ++-- inst/shiny/ui_files/ui_4_evalMetrics.R | 508 +- inst/shiny/ui_files/ui_5_prettyPlot.R | 1050 ++--- inst/shiny/ui_files/ui_6_export.R | 284 - inst/shiny/ui_files/ui_7_manual.R | 54 inst/shiny/ui_files/ui_common.R | 530 +- inst/shiny/ui_files/ui_funcs.R | 160 man/eSDM-package.Rd | 68 man/eSDM_GUI.Rd | 38 man/ensemble_create.Rd | 144 man/ensemble_rescale.Rd | 124 man/evaluation_metrics.Rd | 90 man/gshhg.l.L16.Rd | 40 man/model_abundance.Rd | 84 man/overlay_sdm.Rd | 122 man/preds.Rd | 106 man/pts2poly_centroids.Rd | 118 man/pts2poly_vertices.Rd | 92 man/validation.data.Rd | 44 tests/testthat.R | 8 tests/testthat/test-ensemble.R | 168 tests/testthat/test-internals.R | 76 tests/testthat/test-model_abundance.R | 54 tests/testthat/test-overlay_sdm.R | 60 tests/testthat/test-pts2poly.R | 80 vignettes/example-analysis.Rmd | 1113 ++--- 104 files changed, 19703 insertions(+), 19730 deletions(-)