Sun, 09 May 2021

Package tidytransit updated to version 1.0.0 with previous version 0.7.3 dated 2021-02-27

Title: Read, Validate, Analyze, and Map Files in the General Transit Feed Specification
Description: Read General Transit Feed Specification (GTFS) zipfiles into a list of R dataframes. Perform validation of the data structure against the specification. Analyze the headways and frequencies at routes and stops. Create maps and perform spatial analysis on the routes and stops. Please see the GTFS documentation here for more detail: <http://gtfs.org/>.
Author: Flavio Poletti [aut], Daniel Herszenhut [aut] (<https://orcid.org/0000-0001-8066-1105>), Mark Padgham [aut], Tom Buckley [aut, cre], Danton Noriega-Goodwin [aut], Angela Li [ctb], Elaine McVey [ctb], Charles Hans Thompson [ctb], Michael Sumner [ctb], Patrick Hausmann [ctb], Bob Rudis [ctb], James Lamb [ctb], Alexandra Kapp [ctb], Kearey Smith [ctb], Dave Vautin [ctb], Kyle Walker [ctb]
Maintainer: Tom Buckley <tom@tbuckl.com>

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Package GLMcat updated to version 0.2.2 with previous version 0.2.1 dated 2021-03-06

Title: Generalized Linear Models for Categorical Responses
Description: In statistical modeling, there is a wide variety of regression models for categorical dependent variables (nominal or ordinal data); yet, there is no software embracing all these models together in a uniform and generalized format. Following the methodology proposed by Peyhardi, Trottier, and Guédon (2015) <doi:10.1093/biomet/asv042>, we introduce 'GLMcat', an R package to estimate generalized linear models implemented under the unified specification (r, F, Z). Where r represents the ratio of probabilities (reference, cumulative, adjacent, or sequential), F the cumulative cdf function for the linkage, and Z, the design matrix.
Author: Lorena León [aut, cre], Jean Peyhardi [aut], Catherine Trottier [aut]
Maintainer: Lorena León <ylorenaleonv@gmail.com>

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Package decompr updated to version 6.0.0 with previous version 4.5.0 dated 2016-08-17

Title: Global Value Chain Decomposition
Description: Three global value chain (GVC) decompositions are implemented. The Leontief decomposition derives the value added origin of exports by country and industry as in Hummels, Ishii and Yi (2001). The Koopman, Wang and Wei (2014) decomposition splits country-level exports into 9 value added components, and the Wang, Wei and Zhu (2013) decomposition splits bilateral exports into 16 value added components. Various GVC indicators based on these decompositions are computed in the complimentary 'gvc' package. --- References: --- Hummels, D., Ishii, J., & Yi, K. M. (2001). The nature and growth of vertical specialization in world trade. Journal of international Economics, 54(1), 75-96. Koopman, R., Wang, Z., & Wei, S. J. (2014). Tracing value-added and double counting in gross exports. American Economic Review, 104(2), 459-94. Wang, Z., Wei, S. J., & Zhu, K. (2013). Quantifying international production sharing at the bilateral and sector levels (No. w19677). National Bureau of Economic Research.
Author: Bastiaan Quast [aut, cre], Fei Wang [aut], Victor Kummritz [aut], Oliver Reiter [ctb], Sebastian Krantz [ctb]
Maintainer: Bastiaan Quast <bquast@gmail.com>

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Package ctrdata updated to version 1.6.0 with previous version 1.5.3 dated 2021-04-19

Title: Retrieve and Analyze Clinical Trials in Public Registers
Description: Provides functions for querying, retrieving and analyzing protocol- and results-related information on clinical trials from two public registers, the 'European Union Clinical Trials Register' ('EUCTR', <https://www.clinicaltrialsregister.eu/>), 'ClinicalTrials.gov' ('CTGOV', <https://clinicaltrials.gov/>) and the 'ISRCTN' (<http://www.isrctn.com/>). Trial information is downloaded, converted and stored in a database ('SQLite' or 'MongoDB', via 'nodbi'). Functions are provided to identify de-duplicated records, to easily find and extract variables (fields) of interest even from complex nesting as used by the registers, and to update previous queries that users retrieved in a database. The package can be used for meta analysis and trend-analysis of the design and conduct as well as results of clinical trials.
Author: Ralf Herold [aut, cre] (<https://orcid.org/0000-0002-8148-6748>)
Maintainer: Ralf Herold <ralf.herold@mailbox.org>

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Package helsinki updated to version 1.0.1 with previous version 0.9.29 dated 2017-02-18

Title: R Tools for Helsinki Open Data
Description: Tools for accessing various open data sources in the Helsinki region in Finland. Current data sources include the Real Estate Department (<http://ptp.hel.fi/avoindata/>), Service Map API (<http://api.hel.fi/servicemap/v2/>), Linked Events API (<http://api.hel.fi/linkedevents/v1/>), Helsinki Region Infoshare statistics API (<https://dev.hel.fi/stats/>).
Author: Juuso Parkkinen [aut, cre], Joona Lehtomaki [aut], Pyry Kantanen [aut], Leo Lahti [aut] (<https://orcid.org/0000-0001-5537-637X>)
Maintainer: Juuso Parkkinen <juuso.parkkinen@iki.fi>

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Package interactionR updated to version 0.1.2 with previous version 0.1.1 dated 2020-06-24

Title: Full Reporting of Interaction Analyses
Description: Produces a publication-ready table that includes all effect estimates necessary for full reporting effect modification and interaction analysis as recommended by Knol and Vanderweele (2012) [<doi:10.1093/ije/dyr218>]. It also estimates confidence interval for the trio of additive interaction measures using the delta method (see Hosmer and Lemeshow (1992), [<doi:10.1097/00001648-199209000-00012>]), variance recovery method (see Zou (2008), [<doi:10.1093/aje/kwn104>]), or percentile bootstrapping (see Assmann et al. (1996), [<doi:10.1097/00001648-199605000-00012>]).
Author: Babatunde Alli
Maintainer: Babatunde Alli <babatunde.alli@mail.mcgill.ca>

Diff between interactionR versions 0.1.1 dated 2020-06-24 and 0.1.2 dated 2021-05-09

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Package slanter updated to version 0.2-0 with previous version 0.1-0 dated 2020-09-14

Title: Slanted Matrices and Ordered Clustering
Description: Slanted matrices and ordered clustering for better visualization of similarity data.
Author: Oren Ben-Kiki [aut, cre], Weizmann Institute of Science [cph]
Maintainer: Oren Ben-Kiki <oren@ben-kiki.org>

Diff between slanter versions 0.1-0 dated 2020-09-14 and 0.2-0 dated 2021-05-09

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Package ptm updated to version 0.2.3 with previous version 0.2.2 dated 2020-12-16

Title: Analyses of Protein Post-Translational Modifications
Description: Contains utilities for the analysis of post-translational modifications (PTMs) in proteins, with particular emphasis on the sulfoxidation of methionine residues. Features include the ability to download, filter and analyze data from the sulfoxidation database 'MetOSite', and integrate data from other main PTMs (other databases). Utilities to search and characterize S-aromatic motifs in proteins are also provided. In addition, functions to analyze sequence environments around modifiable residues in proteins can be found. For instance, 'ptm' allows to search for amino acids either overrepresented or avoided around the modifiable residues from the proteins of interest. Functions tailored to test statistical hypothesis related to these differential sequence environments are also implemented. A number of utilities to assess the effect of the modification/mutation of a given residue on the protein stability, have also been included in this package. Further and detailed information regarding the methods in this package can be found in (Aledo (2020) <https://metositeptm.com>).
Author: Juan Carlos Aledo [au, cre]
Maintainer: Juan Carlos Aledo <caledo@uma.es>

Diff between ptm versions 0.2.2 dated 2020-12-16 and 0.2.3 dated 2021-05-09

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More information about ptm at CRAN
Permanent link

Package match2C updated to version 1.1.1 with previous version 1.1.0 dated 2021-02-17

Title: Match One Sample using Two Criteria
Description: Multivariate matching in observational studies typically has two goals: 1. to construct treated and control groups that have similar distribution of observed covariates and 2. to produce matched pairs or sets that are homogeneous in a few priority variables. This packages implements a network-flow-based method built around a tripartite graph that can simultaneously achieve both goals. A detailed explanation of the workflow and numerous examples are given in the vignette.
Author: Bo Zhang [aut, cre]
Maintainer: Bo Zhang <bozhan@wharton.upenn.edu>

Diff between match2C versions 1.1.0 dated 2021-02-17 and 1.1.1 dated 2021-05-09

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Package duckdb updated to version 0.2.6 with previous version 0.2.5 dated 2021-03-16

Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data management system with support for the Structured Query Language (SQL). This package includes all of DuckDB and a R Database Interface (DBI) connector.
Author: Hannes Mühleisen [aut, cre] (<https://orcid.org/0000-0001-8552-0029>), Mark Raasveldt [aut] (<https://orcid.org/0000-0001-5005-6844>), DuckDB Contributors [aut], Apache Software Foundation [cph], PostgreSQL Global Development Group [cph], The Regents of the University of California [cph], Cameron Desrochers [cph], Victor Zverovich [cph], RAD Game Tools [cph], Valve Software [cph], Rich Geldreich [cph], Tenacious Software LLC [cph], The RE2 Authors [cph], Google Inc. [cph], Facebook Inc. [cph], Steven G. Johnson [cph], Jiahao Chen [cph], Tony Kelman [cph], Jonas Fonseca [cph], Lukas Fittl [cph], Salvatore Sanfilippo [cph], Art.sy, Inc. [cph], Oran Agra [cph], Redis Labs, Inc. [cph], Melissa O'Neill [cph], PCG Project contributors [cph]
Maintainer: Hannes Mühleisen <hannes@cwi.nl>

Diff between duckdb versions 0.2.5 dated 2021-03-16 and 0.2.6 dated 2021-05-09

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 duckdb-0.2.6/duckdb/DESCRIPTION                                                                                   |   29 
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 duckdb-0.2.6/duckdb/src/duckdb/extension/parquet/include/resizable_buffer.hpp                                     |   19 
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 duckdb-0.2.6/duckdb/src/duckdb/extension/parquet/include/struct_column_reader.hpp                                 |only
 duckdb-0.2.6/duckdb/src/duckdb/extension/parquet/include/templated_column_reader.hpp                              |only
 duckdb-0.2.6/duckdb/src/duckdb/extension/parquet/include/thrift_tools.hpp                                         |   15 
 duckdb-0.2.6/duckdb/src/duckdb/extension/parquet/parquet-extension.cpp                                            |   71 
 duckdb-0.2.6/duckdb/src/duckdb/extension/parquet/parquet_reader.cpp                                               |  246 
 duckdb-0.2.6/duckdb/src/duckdb/extension/parquet/parquet_statistics.cpp                                           |   13 
 duckdb-0.2.6/duckdb/src/duckdb/extension/parquet/parquet_timestamp.cpp                                            |    6 
 duckdb-0.2.6/duckdb/src/duckdb/extension/parquet/parquet_writer.cpp                                               |   37 
 duckdb-0.2.6/duckdb/src/duckdb/src/catalog/catalog_entry/index_catalog_entry.cpp                                  |    7 
 duckdb-0.2.6/duckdb/src/duckdb/src/catalog/catalog_set.cpp                                                        |   18 
 duckdb-0.2.6/duckdb/src/duckdb/src/catalog/dependency_manager.cpp                                                 |    1 
 duckdb-0.2.6/duckdb/src/duckdb/src/common/allocator.cpp                                                           |only
 duckdb-0.2.6/duckdb/src/duckdb/src/common/bit_operations.cpp                                                      |only
 duckdb-0.2.6/duckdb/src/duckdb/src/common/cycle_counter.cpp                                                       |only
 duckdb-0.2.6/duckdb/src/duckdb/src/common/enums/expression_type.cpp                                               |    6 
 duckdb-0.2.6/duckdb/src/duckdb/src/common/enums/logical_operator_type.cpp                                         |    2 
 duckdb-0.2.6/duckdb/src/duckdb/src/common/enums/physical_operator_type.cpp                                        |    4 
 duckdb-0.2.6/duckdb/src/duckdb/src/common/enums/statement_type.cpp                                                |    2 
 duckdb-0.2.6/duckdb/src/duckdb/src/common/file_system.cpp                                                         |   23 
 duckdb-0.2.6/duckdb/src/duckdb/src/common/limits.cpp                                                              |    3 
 duckdb-0.2.6/duckdb/src/duckdb/src/common/operator/cast_operators.cpp                                             |  186 
 duckdb-0.2.6/duckdb/src/duckdb/src/common/progress_bar.cpp                                                        |    7 
 duckdb-0.2.6/duckdb/src/duckdb/src/common/tree_renderer.cpp                                                       |   12 
 duckdb-0.2.6/duckdb/src/duckdb/src/common/types.cpp                                                               |   75 
 duckdb-0.2.6/duckdb/src/duckdb/src/common/types/chunk_collection.cpp                                              |   12 
 duckdb-0.2.6/duckdb/src/duckdb/src/common/types/data_chunk.cpp                                                    |  110 
 duckdb-0.2.6/duckdb/src/duckdb/src/common/types/date.cpp                                                          |   36 
 duckdb-0.2.6/duckdb/src/duckdb/src/common/types/hash.cpp                                                          |   31 
 duckdb-0.2.6/duckdb/src/duckdb/src/common/types/hyperloglog.cpp                                                   |   32 
 duckdb-0.2.6/duckdb/src/duckdb/src/common/types/interval.cpp                                                      |   27 
 duckdb-0.2.6/duckdb/src/duckdb/src/common/types/row_data_collection.cpp                                           |only
 duckdb-0.2.6/duckdb/src/duckdb/src/common/types/selection_vector.cpp                                              |    2 
 duckdb-0.2.6/duckdb/src/duckdb/src/common/types/time.cpp                                                          |   18 
 duckdb-0.2.6/duckdb/src/duckdb/src/common/types/timestamp.cpp                                                     |  100 
 duckdb-0.2.6/duckdb/src/duckdb/src/common/types/validity_mask.cpp                                                 |   25 
 duckdb-0.2.6/duckdb/src/duckdb/src/common/types/value.cpp                                                         |  167 
 duckdb-0.2.6/duckdb/src/duckdb/src/common/types/vector.cpp                                                        |  210 
 duckdb-0.2.6/duckdb/src/duckdb/src/common/types/vector_buffer.cpp                                                 |   42 
 duckdb-0.2.6/duckdb/src/duckdb/src/common/vector_operations/vector_cast.cpp                                       |   94 
 duckdb-0.2.6/duckdb/src/duckdb/src/common/vector_operations/vector_copy.cpp                                       |  128 
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/aggregate_hashtable.cpp                                              |    4 
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/expression_executor.cpp                                              |    7 
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/expression_executor/execute_case.cpp                                 |   17 
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/expression_executor/execute_comparison.cpp                           |   42 
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/expression_executor/execute_function.cpp                             |    8 
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/index/art/art.cpp                                                    |   11 
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/index/art/art_key.cpp                                                |  153 
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/join_hashtable.cpp                                                   |   37 
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/operator/aggregate/physical_hash_aggregate.cpp                       |   59 
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/operator/aggregate/physical_perfecthash_aggregate.cpp                |   34 
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/operator/aggregate/physical_simple_aggregate.cpp                     |    2 
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/operator/aggregate/physical_window.cpp                               |  784 
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/operator/helper/physical_load.cpp                                    |only
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/operator/join/physical_blockwise_nl_join.cpp                         |    3 
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/operator/join/physical_cross_product.cpp                             |    2 
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/operator/join/physical_delim_join.cpp                                |    4 
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/operator/join/physical_hash_join.cpp                                 |    3 
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/operator/join/physical_index_join.cpp                                |    9 
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/operator/join/physical_nested_loop_join.cpp                          |    3 
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/operator/join/physical_piecewise_merge_join.cpp                      |    3 
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/operator/order/physical_order.cpp                                    | 1965 
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/operator/order/physical_top_n.cpp                                    |   18 
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/operator/persistent/buffered_csv_reader.cpp                          |   55 
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/operator/persistent/physical_copy_to_file.cpp                        |    3 
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/operator/persistent/physical_delete.cpp                              |    4 
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/operator/persistent/physical_insert.cpp                              |    4 
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/operator/persistent/physical_update.cpp                              |    2 
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/operator/projection/physical_tableinout_function.cpp                 |only
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/operator/projection/physical_unnest.cpp                              |    8 
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/operator/scan/physical_table_scan.cpp                                |   10 
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/operator/schema/physical_create_table_as.cpp                         |    2 
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/partitionable_hashtable.cpp                                          |   31 
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/physical_plan/plan_aggregate.cpp                                     |    2 
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/physical_plan/plan_comparison_join.cpp                               |   22 
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/physical_plan/plan_get.cpp                                           |   13 
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/physical_plan/plan_simple.cpp                                        |    3 
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/physical_plan/plan_window.cpp                                        |   71 
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/physical_plan_generator.cpp                                          |    1 
 duckdb-0.2.6/duckdb/src/duckdb/src/execution/window_segment_tree.cpp                                              |   11 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/aggregate/distributive/count.cpp                                      |    3 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/aggregate/distributive_functions.cpp                                  |    1 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/aggregate/holistic/approximate_quantile.cpp                           |   14 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/aggregate/holistic/mode.cpp                                           |only
 duckdb-0.2.6/duckdb/src/duckdb/src/function/aggregate/holistic/quantile.cpp                                       |  556 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/aggregate/holistic/reservoir_quantile.cpp                             |   12 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/aggregate/holistic_functions.cpp                                      |    1 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/aggregate/nested/histogram.cpp                                        |   35 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/aggregate/nested/list.cpp                                             |   68 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/cast_rules.cpp                                                        |   18 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/pragma/pragma_functions.cpp                                           |   10 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/pragma/pragma_queries.cpp                                             |    6 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/scalar/date/date_part.cpp                                             |   22 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/scalar/date/date_trunc.cpp                                            |   41 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/scalar/date/strftime.cpp                                              |   37 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/scalar/nested/array_slice.cpp                                         |only
 duckdb-0.2.6/duckdb/src/duckdb/src/function/scalar/nested/list_extract.cpp                                        |  102 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/scalar/nested/list_value.cpp                                          |   21 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/scalar/nested/struct_extract.cpp                                      |    8 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/scalar/nested_functions.cpp                                           |    1 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/scalar/operators/add.cpp                                              |    9 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/scalar/operators/arithmetic.cpp                                       |   11 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/scalar/operators/bitwise.cpp                                          |    2 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/scalar/sequence/currval.cpp                                           |only
 duckdb-0.2.6/duckdb/src/duckdb/src/function/scalar/sequence/nextval.cpp                                           |    1 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/scalar/sequence_functions.cpp                                         |    1 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/scalar/string/contains.cpp                                            |    2 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/scalar/string/string_split.cpp                                        |   75 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/table/arrow.cpp                                                       |  251 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/table/checkpoint.cpp                                                  |    6 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/table/copy_csv.cpp                                                    |    3 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/table/glob.cpp                                                        |    6 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/table/information_schema/information_schema_columns.cpp               |   13 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/table/information_schema/information_schema_schemata.cpp              |    4 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/table/information_schema/information_schema_tables.cpp                |   11 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/table/pragma_detailed_profiling_output.cpp                            |only
 duckdb-0.2.6/duckdb/src/duckdb/src/function/table/pragma_last_profiling_output.cpp                                |only
 duckdb-0.2.6/duckdb/src/duckdb/src/function/table/range.cpp                                                       |   11 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/table/read_csv.cpp                                                    |   32 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/table/repeat.cpp                                                      |    3 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/table/sqlite/pragma_collations.cpp                                    |    6 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/table/sqlite/pragma_database_list.cpp                                 |    4 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/table/sqlite/pragma_database_size.cpp                                 |    4 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/table/sqlite/pragma_functions.cpp                                     |   26 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/table/sqlite/pragma_table_info.cpp                                    |    4 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/table/sqlite/sqlite_master.cpp                                        |   12 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/table/sqlite_functions.cpp                                            |    2 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/table/summary.cpp                                                     |only
 duckdb-0.2.6/duckdb/src/duckdb/src/function/table/table_scan.cpp                                                  |   41 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/table/version/pragma_version.cpp                                      |   10 
 duckdb-0.2.6/duckdb/src/duckdb/src/function/udf_function.cpp                                                      |    1 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb.h                                                               |   12 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb.hpp                                                             |    1 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/catalog/catalog.hpp                                             |    4 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry.hpp                                       |    4 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/sequence_catalog_entry.hpp                |    2 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_set.hpp                                         |   15 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/allocator.hpp                                            |only
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/array.hpp                                                |only
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/arrow.hpp                                                |    5 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/atomic.hpp                                               |only
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/bit_operations.hpp                                       |only
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/constants.hpp                                            |    8 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/cycle_counter.hpp                                        |only
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/deque.hpp                                                |only
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/enums/expression_type.hpp                                |    8 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/enums/logical_operator_type.hpp                          |    3 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/enums/physical_operator_type.hpp                         |    4 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/enums/relation_type.hpp                                  |    3 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/enums/statement_type.hpp                                 |    1 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/file_system.hpp                                          |    4 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/helper.hpp                                               |    2 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/mutex.hpp                                                |    1 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/operator/cast_operators.hpp                              |  152 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/operator/comparison_operators.hpp                        |   21 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/profiler.hpp                                             |    1 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/progress_bar.hpp                                         |   20 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/serializer.hpp                                           |    4 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/single_thread_ptr.hpp                                    |   43 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/types.hpp                                                |  230 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/types/cast_helpers.hpp                                   |    6 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/types/chunk_collection.hpp                               |   15 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/types/data_chunk.hpp                                     |   10 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/types/date.hpp                                           |    1 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/types/interval.hpp                                       |    3 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/types/null_value.hpp                                     |    1 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/types/row_data_collection.hpp                            |only
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/types/selection_vector.hpp                               |    2 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/types/string_type.hpp                                    |    8 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/types/time.hpp                                           |    1 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/types/timestamp.hpp                                      |    3 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/types/validity_mask.hpp                                  |    8 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/types/value.hpp                                          |   28 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/types/vector.hpp                                         |   69 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/types/vector_buffer.hpp                                  |   26 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/vector_operations/aggregate_executor.hpp                 |    1 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/vector_operations/binary_executor.hpp                    |    1 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/vector_operations/vector_operations.hpp                  |   20 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/winapi.hpp                                               |   14 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/windows_undefs.hpp                                       |only
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/execution/executor.hpp                                          |    2 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/execution/expression_executor.hpp                               |    2 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/execution/expression_executor_state.hpp                         |    4 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/execution/index/art/art_key.hpp                                 |   31 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/execution/join_hashtable.hpp                                    |    5 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_hash_aggregate.hpp        |    6 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_perfecthash_aggregate.hpp |    2 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_window.hpp                |    7 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_load.hpp                     |only
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_blockwise_nl_join.hpp          |    2 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_delim_join.hpp                 |    2 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_hash_join.hpp                  |    2 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_nested_loop_join.hpp           |    2 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_piecewise_merge_join.hpp       |    2 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/execution/operator/order/physical_order.hpp                     |   42 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/execution/operator/order/physical_top_n.hpp                     |    2 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/buffered_csv_reader.hpp           |    2 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_copy_to_file.hpp         |    2 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/execution/operator/projection/physical_tableinout_function.hpp  |only
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/execution/partitionable_hashtable.hpp                           |    6 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/execution/physical_sink.hpp                                     |    3 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/function/aggregate/distributive_functions.hpp                   |    4 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/function/aggregate/holistic_functions.hpp                       |    4 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/function/function.hpp                                           |   18 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/function/replacement_scan.hpp                                   |only
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/function/scalar/nested_functions.hpp                            |    5 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/function/scalar/sequence_functions.hpp                          |    3 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/function/scalar_function.hpp                                    |    4 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/function/table/list.hpp                                         |    1 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/function/table/sqlite_functions.hpp                             |    8 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/function/table/summary.hpp                                      |only
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/function/table/table_scan.hpp                                   |    4 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/function/table_function.hpp                                     |   19 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/function/udf_function.hpp                                       |  131 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/main/appender.hpp                                               |    6 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/main/client_context.hpp                                         |   14 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/main/config.hpp                                                 |   10 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/main/connection.hpp                                             |    2 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/main/loadable_extension.hpp                                     |only
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/main/query_profiler.hpp                                         |   45 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/main/relation.hpp                                               |    4 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/main/relation/create_view_relation.hpp                          |    3 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/main/relation/query_relation.hpp                                |only
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/main/relation/table_function_relation.hpp                       |    4 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/parallel/concurrentqueue.hpp                                    |    4 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/parallel/pipeline.hpp                                           |   13 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/parallel/task.hpp                                               |    2 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/parallel/task_counter.hpp                                       |only
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/parallel/task_scheduler.hpp                                     |    7 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/parser/expression/cast_expression.hpp                           |    4 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/parser/expression/list.hpp                                      |    1 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/parser/expression/operator_expression.hpp                       |    1 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/parser/expression/positional_reference_expression.hpp           |only
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/load_info.hpp                                |only
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/parser/statement/delete_statement.hpp                           |    1 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/parser/statement/list.hpp                                       |    1 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/parser/statement/load_statement.hpp                             |only
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/parser/tableref/table_function_ref.hpp                          |    4 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/parser/tokens.hpp                                               |    2 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/parser/transformer.hpp                                          |    8 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/planner/bind_context.hpp                                        |    2 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/planner/binder.hpp                                              |    3 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_window_expression.hpp                  |    1 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder.hpp                                   |    1 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/storage/buffer/block_handle.hpp                                 |    9 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/storage/buffer_manager.hpp                                      |   12 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/storage/checkpoint/table_data_writer.hpp                        |   17 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/storage/checkpoint/write_overflow_strings_to_disk.hpp           |only
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/storage/column_data.hpp                                         |   79 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/storage/data_table.hpp                                          |   68 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/storage/index.hpp                                               |    5 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/storage/numeric_segment.hpp                                     |   67 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/storage/object_cache.hpp                                        |    8 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/storage/statistics/base_statistics.hpp                          |    7 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/storage/statistics/numeric_statistics.hpp                       |   42 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/storage/statistics/validity_statistics.hpp                      |only
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/storage/storage_lock.hpp                                        |    8 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/storage/string_segment.hpp                                      |  101 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/storage/table/append_state.hpp                                  |   11 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/storage/table/chunk_info.hpp                                    |   15 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/storage/table/column_segment.hpp                                |   19 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/storage/table/persistent_segment.hpp                            |   20 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/storage/table/persistent_table_data.hpp                         |   17 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/storage/table/scan_state.hpp                                    |   17 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/storage/table/segment_base.hpp                                  |    9 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/storage/table/standard_column_data.hpp                          |only
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/storage/table/transient_segment.hpp                             |   22 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/storage/table/update_segment.hpp                                |only
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/storage/table/validity_column_data.hpp                          |only
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/storage/table/validity_segment.hpp                              |only
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/storage/uncompressed_segment.hpp                                |   58 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/transaction/transaction.hpp                                     |    3 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/transaction/transaction_manager.hpp                             |    4 
 duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/transaction/update_info.hpp                                     |   19 
 duckdb-0.2.6/duckdb/src/duckdb/src/main/appender.cpp                                                              |   15 
 duckdb-0.2.6/duckdb/src/duckdb/src/main/client_context.cpp                                                        |   24 
 duckdb-0.2.6/duckdb/src/duckdb/src/main/connection.cpp                                                            |    5 
 duckdb-0.2.6/duckdb/src/duckdb/src/main/database.cpp                                                              |   28 
 duckdb-0.2.6/duckdb/src/duckdb/src/main/duckdb-c.cpp                                                              |   33 
 duckdb-0.2.6/duckdb/src/duckdb/src/main/query_profiler.cpp                                                        |   14 
 duckdb-0.2.6/duckdb/src/duckdb/src/main/query_result.cpp                                                          |   52 
 duckdb-0.2.6/duckdb/src/duckdb/src/main/relation.cpp                                                              |   29 
 duckdb-0.2.6/duckdb/src/duckdb/src/main/relation/create_view_relation.cpp                                         |    9 
 duckdb-0.2.6/duckdb/src/duckdb/src/main/relation/query_relation.cpp                                               |only
 duckdb-0.2.6/duckdb/src/duckdb/src/main/relation/table_function_relation.cpp                                      |   15 
 duckdb-0.2.6/duckdb/src/duckdb/src/optimizer/deliminator.cpp                                                      |    7 
 duckdb-0.2.6/duckdb/src/duckdb/src/optimizer/filter_combiner.cpp                                                  |    6 
 duckdb-0.2.6/duckdb/src/duckdb/src/optimizer/statistics/expression/propagate_cast.cpp                             |    4 
 duckdb-0.2.6/duckdb/src/duckdb/src/optimizer/statistics/expression/propagate_comparison.cpp                       |    2 
 duckdb-0.2.6/duckdb/src/duckdb/src/optimizer/statistics/expression/propagate_constant.cpp                         |    4 
 duckdb-0.2.6/duckdb/src/duckdb/src/optimizer/statistics/expression/propagate_operator.cpp                         |    4 
 duckdb-0.2.6/duckdb/src/duckdb/src/optimizer/statistics/operator/propagate_filter.cpp                             |    8 
 duckdb-0.2.6/duckdb/src/duckdb/src/optimizer/statistics/operator/propagate_join.cpp                               |    7 
 duckdb-0.2.6/duckdb/src/duckdb/src/parallel/executor.cpp                                                          |    2 
 duckdb-0.2.6/duckdb/src/duckdb/src/parallel/pipeline.cpp                                                          |   62 
 duckdb-0.2.6/duckdb/src/duckdb/src/parallel/task_scheduler.cpp                                                    |   16 
 duckdb-0.2.6/duckdb/src/duckdb/src/parser/expression/cast_expression.cpp                                          |   17 
 duckdb-0.2.6/duckdb/src/duckdb/src/parser/expression/operator_expression.cpp                                      |    4 
 duckdb-0.2.6/duckdb/src/duckdb/src/parser/expression/positional_reference_expression.cpp                          |only
 duckdb-0.2.6/duckdb/src/duckdb/src/parser/parsed_expression.cpp                                                   |    6 
 duckdb-0.2.6/duckdb/src/duckdb/src/parser/parsed_expression_iterator.cpp                                          |    7 
 duckdb-0.2.6/duckdb/src/duckdb/src/parser/query_error_context.cpp                                                 |    8 
 duckdb-0.2.6/duckdb/src/duckdb/src/parser/statement/delete_statement.cpp                                          |    3 
 duckdb-0.2.6/duckdb/src/duckdb/src/parser/statement/load_statement.cpp                                            |only
 duckdb-0.2.6/duckdb/src/duckdb/src/parser/transform/expression/transform_array_access.cpp                         |only
 duckdb-0.2.6/duckdb/src/duckdb/src/parser/transform/expression/transform_cast.cpp                                 |    3 
 duckdb-0.2.6/duckdb/src/duckdb/src/parser/transform/expression/transform_expression.cpp                           |    4 
 duckdb-0.2.6/duckdb/src/duckdb/src/parser/transform/expression/transform_function.cpp                             |   25 
 duckdb-0.2.6/duckdb/src/duckdb/src/parser/transform/expression/transform_positional_reference.cpp                 |only
 duckdb-0.2.6/duckdb/src/duckdb/src/parser/transform/statement/transform_create_table_as.cpp                       |    2 
 duckdb-0.2.6/duckdb/src/duckdb/src/parser/transform/statement/transform_delete.cpp                                |    8 
 duckdb-0.2.6/duckdb/src/duckdb/src/parser/transform/statement/transform_load.cpp                                  |only
 duckdb-0.2.6/duckdb/src/duckdb/src/parser/transformer.cpp                                                         |    2 
 duckdb-0.2.6/duckdb/src/duckdb/src/planner/bind_context.cpp                                                       |   29 
 duckdb-0.2.6/duckdb/src/duckdb/src/planner/binder.cpp                                                             |    2 
 duckdb-0.2.6/duckdb/src/duckdb/src/planner/binder/expression/bind_cast_expression.cpp                             |    3 
 duckdb-0.2.6/duckdb/src/duckdb/src/planner/binder/expression/bind_comparison_expression.cpp                       |    4 
 duckdb-0.2.6/duckdb/src/duckdb/src/planner/binder/expression/bind_operator_expression.cpp                         |   25 
 duckdb-0.2.6/duckdb/src/duckdb/src/planner/binder/expression/bind_positional_reference_expression.cpp             |only
 duckdb-0.2.6/duckdb/src/duckdb/src/planner/binder/statement/bind_delete.cpp                                       |   27 
 duckdb-0.2.6/duckdb/src/duckdb/src/planner/binder/statement/bind_load.cpp                                         |only
 duckdb-0.2.6/duckdb/src/duckdb/src/planner/binder/statement/bind_update.cpp                                       |    8 
 duckdb-0.2.6/duckdb/src/duckdb/src/planner/binder/tableref/bind_basetableref.cpp                                  |   23 
 duckdb-0.2.6/duckdb/src/duckdb/src/planner/binder/tableref/bind_table_function.cpp                                |   48 
 duckdb-0.2.6/duckdb/src/duckdb/src/planner/expression/bound_cast_expression.cpp                                   |   20 
 duckdb-0.2.6/duckdb/src/duckdb/src/planner/expression/bound_window_expression.cpp                                 |    4 
 duckdb-0.2.6/duckdb/src/duckdb/src/planner/expression_binder.cpp                                                  |   12 
 duckdb-0.2.6/duckdb/src/duckdb/src/planner/expression_iterator.cpp                                                |    6 
 duckdb-0.2.6/duckdb/src/duckdb/src/planner/planner.cpp                                                            |    1 
 duckdb-0.2.6/duckdb/src/duckdb/src/storage/buffer_manager.cpp                                                     |   16 
 duckdb-0.2.6/duckdb/src/duckdb/src/storage/checkpoint/table_data_reader.cpp                                       |   34 
 duckdb-0.2.6/duckdb/src/duckdb/src/storage/checkpoint/table_data_writer.cpp                                       |  293 
 duckdb-0.2.6/duckdb/src/duckdb/src/storage/checkpoint/write_overflow_strings_to_disk.cpp                          |only
 duckdb-0.2.6/duckdb/src/duckdb/src/storage/column_data.cpp                                                        |  464 
 duckdb-0.2.6/duckdb/src/duckdb/src/storage/data_table.cpp                                                         |  225 
 duckdb-0.2.6/duckdb/src/duckdb/src/storage/index.cpp                                                              |    2 
 duckdb-0.2.6/duckdb/src/duckdb/src/storage/local_storage.cpp                                                      |   12 
 duckdb-0.2.6/duckdb/src/duckdb/src/storage/meta_block_reader.cpp                                                  |    1 
 duckdb-0.2.6/duckdb/src/duckdb/src/storage/meta_block_writer.cpp                                                  |    2 
 duckdb-0.2.6/duckdb/src/duckdb/src/storage/numeric_segment.cpp                                                    |  884 
 duckdb-0.2.6/duckdb/src/duckdb/src/storage/statistics/base_statistics.cpp                                         |   51 
 duckdb-0.2.6/duckdb/src/duckdb/src/storage/statistics/numeric_statistics.cpp                                      |   80 
 duckdb-0.2.6/duckdb/src/duckdb/src/storage/statistics/string_statistics.cpp                                       |   13 
 duckdb-0.2.6/duckdb/src/duckdb/src/storage/statistics/validity_statistics.cpp                                     |only
 duckdb-0.2.6/duckdb/src/duckdb/src/storage/storage_info.cpp                                                       |    2 
 duckdb-0.2.6/duckdb/src/duckdb/src/storage/string_segment.cpp                                                     |  506 
 duckdb-0.2.6/duckdb/src/duckdb/src/storage/table/morsel_info.cpp                                                  |    7 
 duckdb-0.2.6/duckdb/src/duckdb/src/storage/table/persistent_segment.cpp                                           |   45 
 duckdb-0.2.6/duckdb/src/duckdb/src/storage/table/persistent_table_data.cpp                                        |    6 
 duckdb-0.2.6/duckdb/src/duckdb/src/storage/table/standard_column_data.cpp                                         |only
 duckdb-0.2.6/duckdb/src/duckdb/src/storage/table/transient_segment.cpp                                            |   42 
 duckdb-0.2.6/duckdb/src/duckdb/src/storage/table/update_segment.cpp                                               |only
 duckdb-0.2.6/duckdb/src/duckdb/src/storage/table/validity_column_data.cpp                                         |only
 duckdb-0.2.6/duckdb/src/duckdb/src/storage/table/validity_segment.cpp                                             |only
 duckdb-0.2.6/duckdb/src/duckdb/src/storage/uncompressed_segment.cpp                                               |  215 
 duckdb-0.2.6/duckdb/src/duckdb/src/transaction/cleanup_state.cpp                                                  |   16 
 duckdb-0.2.6/duckdb/src/duckdb/src/transaction/commit_state.cpp                                                   |   25 
 duckdb-0.2.6/duckdb/src/duckdb/src/transaction/rollback_state.cpp                                                 |    1 
 duckdb-0.2.6/duckdb/src/duckdb/src/transaction/transaction.cpp                                                    |    8 
 duckdb-0.2.6/duckdb/src/duckdb/src/transaction/transaction_manager.cpp                                            |    3 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/concurrentqueue/blockingconcurrentqueue.h                              |    6 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/concurrentqueue/concurrentqueue.h                                      |   20 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/concurrentqueue/lightweightsemaphore.h                                 |    4 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/fmt/include/fmt/printf.h                                               |    4 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/hyperloglog/hyperloglog.cpp                                            |   23 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/hyperloglog/hyperloglog.hpp                                            |   12 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/hyperloglog/sds.cpp                                                    |    4 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/hyperloglog/sds.hpp                                                    |    5 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/libpg_query/include/nodes/nodes.hpp                                    |    1 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/libpg_query/include/nodes/parsenodes.hpp                               |   11 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/libpg_query/include/parser/gram.hpp                                    |  240 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/libpg_query/include/parser/kwlist.hpp                                  |    1 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/libpg_query/include/pg_definitions.hpp                                 |    4 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/libpg_query/src_backend_parser_gram.cpp                                |20128 +++++-----
 duckdb-0.2.6/duckdb/src/duckdb/third_party/libpg_query/src_backend_parser_scan.cpp                                |  832 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/miniz/miniz.cpp                                                        |    2 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/miniz/miniz.hpp                                                        |    4 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/parquet/parquet_constants.cpp                                          |    2 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/parquet/parquet_constants.h                                            |    2 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/parquet/parquet_types.cpp                                              | 1322 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/parquet/parquet_types.h                                                |  278 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/pcg/pcg_random.hpp                                                     |    8 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/re2/re2/stringpiece.h                                                  |    4 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/snappy/snappy-stubs-internal.h                                         |    6 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/tdigest                                                                |only
 duckdb-0.2.6/duckdb/src/duckdb/third_party/thrift/thrift/TApplicationException.h                                  |    6 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/thrift/thrift/TBase.h                                                  |    8 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/thrift/thrift/TLogging.h                                               |    8 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/thrift/thrift/TToString.h                                              |    4 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/thrift/thrift/Thrift.h                                                 |   10 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/thrift/thrift/protocol/TCompactProtocol.h                              |    8 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/thrift/thrift/protocol/TCompactProtocol.tcc                            |    4 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/thrift/thrift/protocol/TProtocol.cpp                                   |    8 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/thrift/thrift/protocol/TProtocol.h                                     |   10 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/thrift/thrift/protocol/TProtocolDecorator.h                            |    6 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/thrift/thrift/protocol/TProtocolException.h                            |   14 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/thrift/thrift/protocol/TProtocolTypes.h                                |    4 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/thrift/thrift/protocol/TVirtualProtocol.h                              |   12 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/thrift/thrift/thrift-config.h                                          |    2 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/thrift/thrift/transport/TBufferTransports.cpp                          |    8 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/thrift/thrift/transport/TBufferTransports.h                            |   10 
 duckdb-0.2.6/duckdb/src/duckdb/third_party/thrift/thrift/transport/TTransport.h                                   |   10 
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Package DALEXtra updated to version 2.1.1 with previous version 2.0 dated 2020-09-07

Title: Extension for 'DALEX' Package
Description: Provides wrapper of various machine learning models. In applied machine learning, there is a strong belief that we need to strike a balance between interpretability and accuracy. However, in field of the interpretable machine learning, there are more and more new ideas for explaining black-box models, that are implemented in 'R'. 'DALEXtra' creates 'DALEX' Biecek (2018) <arXiv:1806.08915> explainer for many type of models including those created using 'python' 'scikit-learn' and 'keras' libraries, and 'java' 'h2o' library. Important part of the package is Champion-Challenger analysis and innovative approach to model performance across subsets of test data presented in Funnel Plot. Third branch of 'DALEXtra' package is aspect importance analysis that provides instance-level explanations for the groups of explanatory variables.
Author: Szymon Maksymiuk [aut, cre] (<https://orcid.org/0000-0002-3120-1601>), Przemyslaw Biecek [aut] (<https://orcid.org/0000-0001-8423-1823>), Anna Kozak [ctb], Hubert Baniecki [ctb]
Maintainer: Szymon Maksymiuk <sz.maksymiuk@gmail.com>

Diff between DALEXtra versions 2.0 dated 2020-09-07 and 2.1.1 dated 2021-05-09

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Package softImpute updated to version 1.4-1 with previous version 1.4 dated 2015-04-07

Title: Matrix Completion via Iterative Soft-Thresholded SVD
Description: Iterative methods for matrix completion that use nuclear-norm regularization. There are two main approaches.The one approach uses iterative soft-thresholded svds to impute the missing values. The second approach uses alternating least squares. Both have an 'EM' flavor, in that at each iteration the matrix is completed with the current estimate. For large matrices there is a special sparse-matrix class named "Incomplete" that efficiently handles all computations. The package includes procedures for centering and scaling rows, columns or both, and for computing low-rank SVDs on large sparse centered matrices (i.e. principal components).
Author: Trevor Hastie <hastie@stanford.edu> and Rahul Mazumder <rahul.mazumder@gmail.com>
Maintainer: Trevor Hastie <hastie@stanford.edu>

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Package koRpus updated to version 0.13-6 with previous version 0.13-5 dated 2021-02-02

Title: Text Analysis with Emphasis on POS Tagging, Readability, and Lexical Diversity
Description: A set of tools to analyze texts. Includes, amongst others, functions for automatic language detection, hyphenation, several indices of lexical diversity (e.g., type token ratio, HD-D/vocd-D, MTLD) and readability (e.g., Flesch, SMOG, LIX, Dale-Chall). Basic import functions for language corpora are also provided, to enable frequency analyses (supports Celex and Leipzig Corpora Collection file formats) and measures like tf-idf. Note: For full functionality a local installation of TreeTagger is recommended. It is also recommended to not load this package directly, but by loading one of the available language support packages from the 'l10n' repository <https://undocumeantit.github.io/repos/l10n/>. 'koRpus' also includes a plugin for the R GUI and IDE RKWard, providing graphical dialogs for its basic features. The respective R package 'rkward' cannot be installed directly from a repository, as it is a part of RKWard. To make full use of this feature, please install RKWard from <https://rkward.kde.org> (plugins are detected automatically). Due to some restrictions on CRAN, the full package sources are only available from the project homepage. To ask for help, report bugs, request features, or discuss the development of the package, please subscribe to the koRpus-dev mailing list (<https://korpusml.reaktanz.de>).
Author: Meik Michalke [aut, cre], Earl Brown [ctb], Alberto Mirisola [ctb], Alexandre Brulet [ctb], Laura Hauser [ctb]
Maintainer: Meik Michalke <meik.michalke@hhu.de>

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Package getspres updated to version 0.2.0 with previous version 0.1.1 dated 2020-03-31

Title: SPRE Statistics for Exploring Heterogeneity in Meta-Analysis
Description: An implementation of SPRE (standardised predicted random-effects) statistics in R to explore heterogeneity in genetic association meta- analyses, as described by Magosi et al. (2019) <doi:10.1093/bioinformatics/btz590>. SPRE statistics are precision weighted residuals that indicate the direction and extent with which individual study-effects in a meta-analysis deviate from the average genetic effect. Overly influential positive outliers have the potential to inflate average genetic effects in a meta-analysis whilst negative outliers might lower or change the direction of effect. See the 'getspres' website for documentation and examples <https://magosil86.github.io/getspres/>.
Author: Lerato E Magosi [aut], Jemma C Hopewell [aut], Martin Farrall [aut], Lerato E Magosi [cre]
Maintainer: Lerato E Magosi <magosil86@gmail.com>

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Package getmstatistic updated to version 0.2.2 with previous version 0.2.1 dated 2020-03-30

Title: Quantifying Systematic Heterogeneity in Meta-Analysis
Description: Quantifying systematic heterogeneity in meta-analysis using R. The M statistic aggregates heterogeneity information across multiple variants to, identify systematic heterogeneity patterns and their direction of effect in meta-analysis. It's primary use is to identify outlier studies, which either show "null" effects or consistently show stronger or weaker genetic effects than average across, the panel of variants examined in a GWAS meta-analysis. In contrast to conventional heterogeneity metrics (Q-statistic, I-squared and tau-squared) which measure random heterogeneity at individual variants, M measures systematic (non-random) heterogeneity across multiple independently associated variants. Systematic heterogeneity can arise in a meta-analysis due to differences in the study characteristics of participating studies. Some of the differences may include: ancestry, allele frequencies, phenotype definition, age-of-disease onset, family-history, gender, linkage disequilibrium and quality control thresholds. See <https://magosil86.github.io/getmstatistic/> for statistical statistical theory, documentation and examples.
Author: Lerato E Magosi [aut], Jemma C Hopewell [aut], Martin Farrall [aut], Lerato E Magosi [cre]
Maintainer: Lerato E Magosi <magosil86@gmail.com>

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Package bcaboot updated to version 0.2-3 with previous version 0.2-1 dated 2018-08-31

Title: Bias Corrected Bootstrap Confidence Intervals
Description: Computation of bootstrap confidence intervals in an almost automatic fashion as described in Efron and Narasimhan (2020, <doi:10.1080/10618600.2020.1714633>).
Author: Bradley Efron [aut], Balasubramanian Narasimhan [aut, cre]
Maintainer: Balasubramanian Narasimhan <naras@stat.stanford.edu>

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Package SMLE updated to version 1.1.1 with previous version 0.4.1 dated 2020-06-24

Title: Joint Feature Screening via Sparse MLE
Description: Feature screening is a powerful tool in processing ultrahigh dimensional data. It attempts to screen out most irrelevant features in preparation for a more elaborate analysis. Xu and Chen (2014)<doi:10.1080/01621459.2013.879531> proposed an effective screening method SMLE, which naturally incorporates the joint effects among features in the screening process. This package provides an efficient implementation of SMLE-screening for high-dimensional linear, logistic, and Poisson models. The package also provides a function for conducting accurate post-screening feature selection based on an iterative hard-thresholding procedure and a user-specified selection criterion.
Author: Qianxiang Zang, Chen Xu, Kelly Burkett
Maintainer: Qianxiang Zang <qzang023@uottawa.ca>

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