Title: Competing Proximal Gradients Library
Description: Functions to generate ensembles of generalized linear models using
competing proximal gradients. The optimal sparsity and diversity
tuning parameters are selected via an alternating grid search.
Author: Anthony Christidis <anthony.christidis@stat.ubc.ca>,
Stefan Van Aelst <stefan.vanaelst@kuleuven.be>,
Ruben Zamar <ruben@stat.ubc.ca>
Maintainer: Anthony Christidis <anthony.christidis@stat.ubc.ca>
Diff between CPGLIB versions 1.0.0 dated 2021-05-10 and 1.0.1 dated 2021-05-10
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 3 +++ src/CPGLIB.cpp | 1 - src/CV_CPGLIB.cpp | 10 +++++++--- 5 files changed, 18 insertions(+), 12 deletions(-)
Title: Turn Your Git Commit Messages into a HTML Book
Description: Read all commit messages of your local git repository and
sort them according to tags or specific text pattern into chapters of
a HTML book using 'bookdown'. The git history book presentation helps
organisms required to testify for every changes in their source code,
in relation to features requests.
Author: Sébastien Rochette [aut, cre] (<https://orcid.org/0000-0002-1565-9313>),
Cervan Girard [aut] (<https://orcid.org/0000-0002-4816-4624>),
ThinkR [cph],
Institut de Recherches Internationales Servier [spn]
Maintainer: Sébastien Rochette <sebastien@thinkr.fr>
Diff between gitdown versions 0.1.1 dated 2021-05-10 and 0.1.2 dated 2021-05-10
DESCRIPTION | 6 - MD5 | 20 +-- NEWS.md | 4 R/get_info_files.R | 10 + R/git_down.R | 12 +- README.md | 54 +++++----- inst/doc/ab-create-git_down.html | 32 +++--- man/create_vignette_last_modif.Rd | 10 + man/git_down.Rd | 12 +- tests/testthat/test-get_info_files.R | 47 ++++----- tests/testthat/test-git_down.R | 182 +++++++++++++++++------------------ 11 files changed, 210 insertions(+), 179 deletions(-)
Title: A Faster 'ARFF' File Reader and Writer
Description: Reads and writes 'ARFF' files. 'ARFF' (Attribute-Relation
File Format) files are like 'CSV' files, with a little bit of added
meta information in a header and standardized NA values. They are
quite often used for machine learning data sets and were introduced
for the 'WEKA' machine learning 'Java' toolbox. See
<https://waikato.github.io/weka-wiki/formats_and_processing/arff_stable/>
for further info on 'ARFF' and for
<http://www.cs.waikato.ac.nz/ml/weka/> for more info on 'WEKA'.
'farff' gets rid of the 'Java' dependency that 'RWeka' enforces, and
it is at least a faster reader (for bigger files). It uses 'readr' as
parser back-end for the data section of the 'ARFF' file. Consistency
with 'RWeka' is tested on 'Github' and 'Travis CI' with hundreds of
'ARFF' files from 'OpenML'.
Author: Marc Becker [cre, aut] (<https://orcid.org/0000-0002-8115-0400>),
Bernd Bischl [aut] (<https://orcid.org/0000-0001-6002-6980>),
Jakob Bossek [aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between farff versions 1.1 dated 2019-05-03 and 1.1.1 dated 2021-05-10
farff-1.1.1/farff/DESCRIPTION | 53 +++++++++++++++++++++++++++---------- farff-1.1.1/farff/MD5 | 14 ++------- farff-1.1.1/farff/NEWS.md | 3 ++ farff-1.1.1/farff/man/readARFF.Rd | 10 +++++- farff-1.1.1/farff/man/writeARFF.Rd | 9 ++++-- farff-1.1/farff/tests |only 6 files changed, 61 insertions(+), 28 deletions(-)
Title: Adaptive Gauss Hermite Quadrature for Bayesian Inference
Description: Adaptive Gauss Hermite Quadrature for Bayesian inference.
The AGHQ method for normalizing posterior distributions
and making Bayesian inferences based on them. Functions are provided for doing
quadrature and marginal Laplace approximations, and summary methods are provided
for making inferences based on the results.
See Stringer (2021). "Implementing Adaptive Quadrature for Bayesian Inference:
the aghq Package" <arXiv:2101.04468>.
Author: Alex Stringer
Maintainer: Alex Stringer <alex.stringer@mail.utoronto.ca>
Diff between aghq versions 0.1.0 dated 2021-01-18 and 0.2.0 dated 2021-05-10
aghq-0.1.0/aghq/R/utils-pipe.R |only aghq-0.1.0/aghq/man/pipe.Rd |only aghq-0.2.0/aghq/DESCRIPTION | 11 aghq-0.2.0/aghq/MD5 | 75 +- aghq-0.2.0/aghq/NAMESPACE | 18 aghq-0.2.0/aghq/NEWS.md |only aghq-0.2.0/aghq/R/00-misc-support-functions.R | 180 ++++++ aghq-0.2.0/aghq/R/01-optimization.R | 2 aghq-0.2.0/aghq/R/02-normalization.R | 20 aghq-0.2.0/aghq/R/03-summary-statistics.R | 323 +++++++++--- aghq-0.2.0/aghq/R/04-aghq.R | 287 +++++++++- aghq-0.2.0/aghq/README.md | 6 aghq-0.2.0/aghq/inst/doc/aghq.R | 28 - aghq-0.2.0/aghq/inst/doc/aghq.Rmd | 28 - aghq-0.2.0/aghq/inst/doc/aghq.html | 43 - aghq-0.2.0/aghq/man/aghq.Rd | 1 aghq-0.2.0/aghq/man/compute_moment.Rd | 13 aghq-0.2.0/aghq/man/compute_pdf_and_cdf.Rd | 17 aghq-0.2.0/aghq/man/compute_quantiles.Rd | 24 aghq-0.2.0/aghq/man/default_control.Rd |only aghq-0.2.0/aghq/man/default_control_marglaplace.Rd |only aghq-0.2.0/aghq/man/default_control_tmb.Rd |only aghq-0.2.0/aghq/man/laplace_approximation.Rd | 1 aghq-0.2.0/aghq/man/marginal_laplace.Rd | 38 + aghq-0.2.0/aghq/man/marginal_laplace_tmb.Rd |only aghq-0.2.0/aghq/man/marginal_posterior.Rd | 12 aghq-0.2.0/aghq/man/normalize_logpost.Rd | 14 aghq-0.2.0/aghq/man/optimize_theta.Rd | 1 aghq-0.2.0/aghq/man/plot.aghq.Rd | 2 aghq-0.2.0/aghq/man/print.aghq.Rd | 1 aghq-0.2.0/aghq/man/print.aghqsummary.Rd | 2 aghq-0.2.0/aghq/man/print.laplace.Rd | 1 aghq-0.2.0/aghq/man/print.laplacesummary.Rd | 2 aghq-0.2.0/aghq/man/sample_marginal.Rd | 108 +++- aghq-0.2.0/aghq/man/summary.aghq.Rd | 1 aghq-0.2.0/aghq/man/summary.laplace.Rd | 2 aghq-0.2.0/aghq/tests/testthat/setup-01-optimization.R | 169 ++++++ aghq-0.2.0/aghq/tests/testthat/test-01-optimization.R | 43 + aghq-0.2.0/aghq/tests/testthat/test-02-normalization.R | 121 ++++ aghq-0.2.0/aghq/tests/testthat/test-03-summary-statistics.R | 97 +++ aghq-0.2.0/aghq/tests/testthat/test-04-aghq.R | 53 + aghq-0.2.0/aghq/vignettes/aghq.Rmd | 28 - 42 files changed, 1518 insertions(+), 254 deletions(-)
Title: Use Interdependent Filters on Table Columns in Shiny Apps
Description: Allows to connect 'selectizeInputs' widgets as filters to a 'reactable' table.
As known from spreadsheet applications, column filters are interdependent, so each
filter only shows the values that are really available at the moment based on
the current selection in other filters. Filter values currently not available
(and also those being available) can be shown via popovers or tooltips.
Author: Joachim Zuckarelli [aut, cre] (<https://orcid.org/0000-0002-9280-3016>)
Maintainer: Joachim Zuckarelli <joachim@zuckarelli.de>
Diff between shinyfilter versions 0.1.0 dated 2020-12-02 and 0.1.1 dated 2021-05-10
DESCRIPTION | 6 - MD5 | 12 +-- NEWS.md | 9 ++ R/shinyfilter.r | 49 ++++++++++--- README.md | 71 +++++++++---------- man/update_filters.Rd | 6 - man/update_tooltips.Rd | 181 +++++++++++++++++++++++++------------------------ 7 files changed, 189 insertions(+), 145 deletions(-)
Title: Network Analysis of Dependencies of CRAN Packages
Description: The dependencies of CRAN packages can be analysed in a network fashion. For each package we can obtain the packages that it depends, imports, suggests, etc. By iterating this procedure over a number of packages, we can build, visualise, and analyse the dependency network, enabling us to have a bird's-eye view of the CRAN ecosystem. One aspect of interest is the number of reverse dependencies of the packages, or equivalently the in-degree distribution of the dependency network. This can be fitted by the power law and/or an extreme value mixture distribution <arXiv:2008.03073>, of which functions are provided.
Author: Clement Lee [aut, cre] (<https://orcid.org/0000-0003-1785-8671>)
Maintainer: Clement Lee <clement.lee.tm@outlook.com>
Diff between crandep versions 0.1.1 dated 2020-09-12 and 0.2.0 dated 2021-05-10
DESCRIPTION | 6 MD5 | 62 ++++---- NAMESPACE | 1 NEWS.md | 10 + R/RcppExports.R | 46 +++--- R/data.R | 2 R/get_dep.R | 3 R/graph.R | 14 + README.md | 144 ++++++++++---------- build/vignette.rds |binary inst/doc/cran.R | 53 +++---- inst/doc/cran.Rmd | 58 ++++---- inst/doc/cran.html | 302 +++++++++++++++++++----------------------- inst/doc/degree.R | 12 + inst/doc/degree.Rmd | 26 +++ inst/doc/degree.html | 73 ++++++---- inst/doc/introduction.html | 58 ++++---- man/Smix.Rd | 12 - man/Supp.Rd | 4 man/chi_citations.Rd | 3 man/cran_dependencies.Rd | 3 man/dmix.Rd | 16 +- man/dupp.Rd | 4 man/get_dep.Rd | 3 man/get_dep_all_packages.Rd | 3 man/get_dep_df.Rd | 3 man/get_graph_all_packages.Rd | 7 man/mcmc_mix.Rd | 6 src/RcppExports.cpp | 50 +++--- src/algo.cpp | 97 ++++++++----- vignettes/cran.Rmd | 58 ++++---- vignettes/degree.Rmd | 26 +++ 32 files changed, 652 insertions(+), 513 deletions(-)
Title: Simulate from ODE-Based Models
Description: Fast simulation from ordinary differential equation
(ODE) based models typically employed in quantitative pharmacology and
systems biology.
Author: Kyle T Baron [aut, cre] (<https://orcid.org/0000-0001-7252-5656>),
Bill Gillespie [ctb],
Charles Margossian [ctb],
Devin Pastoor [ctb],
Bill Denney [ctb] (<https://orcid.org/0000-0002-5759-428X>),
Dilawar Singh [ctb],
Felicien Le Louedec [ctb] (<https://orcid.org/0000-0003-3699-2729>),
Timothy Waterhouse [ctb] (<https://orcid.org/0000-0002-0954-9660>),
Metrum Research Group [cph]
Maintainer: Kyle T Baron <kyleb@metrumrg.com>
Diff between mrgsolve versions 0.11.0 dated 2021-03-28 and 0.11.1 dated 2021-05-10
mrgsolve-0.11.0/mrgsolve/man/drop_re.Rd |only mrgsolve-0.11.1/mrgsolve/DESCRIPTION | 6 mrgsolve-0.11.1/mrgsolve/MD5 | 28 +-- mrgsolve-0.11.1/mrgsolve/NAMESPACE | 5 mrgsolve-0.11.1/mrgsolve/R/class_mrgmod.R | 2 mrgsolve-0.11.1/mrgsolve/R/matlist.R | 129 ++++++++---------- mrgsolve-0.11.1/mrgsolve/R/mrgsolve.R | 26 +++ mrgsolve-0.11.1/mrgsolve/R/utils.R | 2 mrgsolve-0.11.1/mrgsolve/inst/include/odeproblem.h | 1 mrgsolve-0.11.1/mrgsolve/man/matlist.Rd | 20 -- mrgsolve-0.11.1/mrgsolve/man/mrgsim.Rd | 6 mrgsolve-0.11.1/mrgsolve/man/zero_re.Rd |only mrgsolve-0.11.1/mrgsolve/src/devtran.cpp | 22 ++- mrgsolve-0.11.1/mrgsolve/src/odeproblem.cpp | 5 mrgsolve-0.11.1/mrgsolve/tests/testthat/test-mrgsim.R | 14 + mrgsolve-0.11.1/mrgsolve/tests/testthat/test-rename.R | 3 16 files changed, 152 insertions(+), 117 deletions(-)
Title: Rule- And Instance-Based Regression Modeling
Description: Regression modeling using rules with added instance-based corrections.
Author: Max Kuhn [aut, cre],
Steve Weston [ctb],
Chris Keefer [ctb],
Nathan Coulter [ctb],
Ross Quinlan [aut] (Author of imported C code),
Rulequest Research Pty Ltd. [cph] (Copyright holder of imported C code)
Maintainer: Max Kuhn <mxkuhn@gmail.com>
Diff between Cubist versions 0.2.3 dated 2020-01-10 and 0.2.40 dated 2021-05-10
DESCRIPTION | 16 MD5 | 32 - R/cubist.R | 12 R/makeDataFile.R | 3 R/makeNamesFile.R | 17 R/predict.cubist.R | 63 +- build/vignette.rds |binary inst/NEWS.Rd | 11 inst/doc/cubist.R | 101 +-- inst/doc/cubist.Rmd | 162 +---- inst/doc/cubist.html | 1475 +++++++++++++++++++++--------------------------- man/cubist.default.Rd | 2 man/dotplot.cubist.Rd | 6 man/predict.cubist.Rd | 10 man/summary.cubist.Rd | 38 - vignettes/cubist.Rmd | 162 +---- vignettes/extras |only vignettes/neighbors.gif |only 18 files changed, 947 insertions(+), 1163 deletions(-)
Title: Generate 'CodeMeta' Metadata for R Packages
Description: The 'Codemeta' Project defines a 'JSON-LD' format
for describing software metadata, as detailed at
<https://codemeta.github.io>. This package provides utilities to
generate, parse, and modify 'codemeta.json' files automatically for R
packages, as well as tools and examples for working with
'codemeta.json' 'JSON-LD' more generally.
Author: Carl Boettiger [aut, cre, cph]
(<https://orcid.org/0000-0002-1642-628X>),
Anna Krystalli [rev, ctb] (<https://orcid.org/0000-0002-2378-4915>),
Toph Allen [rev] (<https://orcid.org/0000-0003-4580-091X>),
Maëlle Salmon [ctb, aut] (<https://orcid.org/0000-0002-2815-0399>),
rOpenSci [fnd] (https://ropensci.org/),
Katrin Leinweber [ctb] (<https://orcid.org/0000-0001-5135-5758>),
Noam Ross [ctb] (<https://orcid.org/0000-0002-2136-0000>),
Arfon Smith [ctb],
Jeroen Ooms [ctb] (<https://orcid.org/0000-0002-4035-0289>),
Sebastian Meyer [ctb] (<https://orcid.org/0000-0002-1791-9449>),
Michael Rustler [ctb] (<https://orcid.org/0000-0003-0647-7726>),
Hauke Sonnenberg [ctb] (<https://orcid.org/0000-0001-9134-2871>),
Sebastian Kreutzer [ctb] (<https://orcid.org/0000-0002-0734-2199>),
Thierry Onkelinx [ctb] (<https://orcid.org/0000-0001-8804-4216>)
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between codemetar versions 0.1.9 dated 2020-07-18 and 0.3.0 dated 2021-05-10
DESCRIPTION | 27 MD5 | 74 - NEWS.md | 15 R/codemeta_description.R | 10 R/codemeta_readme.R | 5 R/extract_badges.R | 4 R/guess_github_metadata.R | 5 R/guess_other_metadata.R | 33 R/utils.R | 30 R/write_codemeta.R | 14 README.md | 669 ++------------ build/vignette.rds |binary inst/deprecated/test-crosswalk.R | 8 inst/doc/codemetar.R | 26 inst/doc/codemetar.Rmd | 6 inst/doc/codemetar.html | 1317 +++++++++++------------------ inst/examples/README_codemetar_good.md | 2 man/codemetar-package.Rd | 12 man/rmdhunks/example.Rmd | 33 man/rmdhunks/goals.Rmd | 2 man/rmdhunks/improvecodemetadata.Rmd | 10 man/rmdhunks/minimeta.Rmd | 2 man/write_codemeta.Rd | 32 tests/testthat/_snaps |only tests/testthat/test-codemeta_description.R | 6 tests/testthat/test-create_codemeta.R |only tests/testthat/test-extract_badges.R | 2 tests/testthat/test-frame.R | 4 tests/testthat/test-get_message.R | 2 tests/testthat/test-get_url.R | 2 tests/testthat/test-give_opinions.R | 8 tests/testthat/test-guess_metadata.R | 14 tests/testthat/test-parse_citation.R | 10 tests/testthat/test-parse_depends.R | 2 tests/testthat/test-parse_people.R | 2 tests/testthat/test-spdx_license.R | 2 tests/testthat/test-utils.R | 8 tests/testthat/test-write_codemeta.R | 58 - vignettes/codemetar.Rmd | 6 39 files changed, 869 insertions(+), 1593 deletions(-)
Title: Open Source OCR Engine
Description: Bindings to 'Tesseract' <https://opensource.google/projects/tesseract>:
a powerful optical character recognition (OCR) engine that supports over 100 languages.
The engine is highly configurable in order to tune the detection algorithms and
obtain the best possible results.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between tesseract versions 4.1 dated 2019-07-25 and 4.1.1 dated 2021-05-10
tesseract-4.1.1/tesseract/DESCRIPTION | 13 tesseract-4.1.1/tesseract/MD5 | 37 tesseract-4.1.1/tesseract/NEWS | 3 tesseract-4.1.1/tesseract/R/ocr.R | 1 tesseract-4.1.1/tesseract/R/onload.R | 4 tesseract-4.1.1/tesseract/R/tessdata.R | 10 tesseract-4.1.1/tesseract/build/vignette.rds |binary tesseract-4.1.1/tesseract/cleanup | 2 tesseract-4.1.1/tesseract/configure | 28 tesseract-4.1.1/tesseract/inst/doc/intro.R | 8 tesseract-4.1.1/tesseract/inst/doc/intro.Rmd | 2 tesseract-4.1.1/tesseract/inst/doc/intro.html | 1421 +------------------------- tesseract-4.1.1/tesseract/man/ocr.Rd | 6 tesseract-4.1.1/tesseract/man/tessdata.Rd | 14 tesseract-4.1.1/tesseract/man/tesseract.Rd | 14 tesseract-4.1.1/tesseract/src/Makevars.ucrt |only tesseract-4.1.1/tesseract/src/Makevars.win | 6 tesseract-4.1.1/tesseract/src/tesseract.cpp | 50 tesseract-4.1.1/tesseract/tools/test.cpp |only tesseract-4.1.1/tesseract/vignettes/intro.Rmd | 2 tesseract-4.1/tesseract/src/test.h |only 21 files changed, 185 insertions(+), 1436 deletions(-)
Title: Siena - Simulation Investigation for Empirical Network Analysis
Description: The main purpose of this package is to perform simulation-based
estimation of stochastic actor-oriented models for longitudinal network
data collected as panel data. Dependent variables can be single or
multivariate networks, which can be directed, non-directed, or two-mode;
and associated actor variables.
There are also functions for testing parameters and checking goodness of fit.
An overview of these models is given in Tom A.B. Snijders (2017), Stochastic
Actor-Oriented Models for Network Dynamics, Annual Review of Statistics and
Its Application, 4, 343-363 <doi: 10.1146/annurev-statistics-060116-054035>.
An extensive manual, scripts, and much further information is at the Siena
website <http://www.stats.ox.ac.uk/~snijders/siena/>.
Author: Tom A.B. Snijders [cre, aut] (<https://orcid.org/0000-0003-3157-4157>),
Ruth Ripley [aut],
Christian Steglich [aut, ctb] (<https://orcid.org/0000-0002-9097-0873>),
Johan Koskinen [aut, ctb] (<https://orcid.org/0000-0002-6860-325X>),
Nynke Niezink [aut, ctb],
Viviana Amati [aut, ctb] (<https://orcid.org/0000-0003-1190-1237>),
Christoph Stadtfeld [ctb] (<https://orcid.org/0000-0002-2704-2134>),
James Hollway [ctb] (IHEID, <https://orcid.org/0000-0002-8361-9647>),
Per Block [ctb],
Robert Krause [ctb],
Charlotte Greenan [ctb],
Josh Lospinoso [ctb],
Michael Schweinberger [ctb] (<https://orcid.org/0000-0003-3649-5386>),
Mark Huisman [ctb],
Krists Boitmanis [ctr],
Felix Schoenenberger [ctb],
Mark Ortmann [ctb],
Marion Hoffman [ctb],
Robert Hellpap [ctb],
Alvaro Uzaheta [ctb]
Maintainer: Tom A.B. Snijders <tom.snijders@nuffield.ox.ac.uk>
Diff between RSiena versions 1.2-23 dated 2020-01-12 and 1.3.0 dated 2021-05-10
RSiena-1.2-23/RSiena/ChangeLog |only RSiena-1.2-23/RSiena/inst/doc |only RSiena-1.2-23/RSiena/src/model/effects/generic/MixedInStarFunction.cpp |only RSiena-1.2-23/RSiena/src/model/effects/generic/MixedInStarFunction.h |only RSiena-1.2-23/RSiena/src/model/effects/generic/MixedOutStarFunction.cpp |only RSiena-1.2-23/RSiena/src/model/effects/generic/MixedOutStarFunction.h |only RSiena-1.2-23/RSiena/src/model/effects/generic/MixedTwoPathFunction.cpp |only RSiena-1.2-23/RSiena/src/model/effects/generic/MixedTwoPathFunction.h |only RSiena-1.3.0/RSiena/.Rinstignore | 23 RSiena-1.3.0/RSiena/DESCRIPTION | 81 RSiena-1.3.0/RSiena/LICENSE |only RSiena-1.3.0/RSiena/MD5 | 373 RSiena-1.3.0/RSiena/NAMESPACE | 154 RSiena-1.3.0/RSiena/NEWS.md |only RSiena-1.3.0/RSiena/R/RSienaRDocumentation.r | 584 - RSiena-1.3.0/RSiena/R/Sienatest.r | 912 - RSiena-1.3.0/RSiena/R/checkImpossibleChanges.r | 138 RSiena-1.3.0/RSiena/R/effects.r | 4318 ++++---- RSiena-1.3.0/RSiena/R/effectsDocumentation.r | 360 RSiena-1.3.0/RSiena/R/effectsMethods.r | 617 - RSiena-1.3.0/RSiena/R/getTargets.r | 278 RSiena-1.3.0/RSiena/R/globals.r | 421 RSiena-1.3.0/RSiena/R/initializeFRAN.r | 4832 ++++----- RSiena-1.3.0/RSiena/R/iwlsm.R | 894 - RSiena-1.3.0/RSiena/R/maxlike.r | 1688 +-- RSiena-1.3.0/RSiena/R/maxlikec.r | 486 RSiena-1.3.0/RSiena/R/maxlikecalc.r | 302 RSiena-1.3.0/RSiena/R/observationErrors.r | 406 RSiena-1.3.0/RSiena/R/phase1.r | 1207 +- RSiena-1.3.0/RSiena/R/phase2.r | 965 + RSiena-1.3.0/RSiena/R/phase3.r | 1844 +-- RSiena-1.3.0/RSiena/R/print01Report.r | 2738 ++--- RSiena-1.3.0/RSiena/R/print07Report.r | 556 - RSiena-1.3.0/RSiena/R/printDataReport.r | 673 - RSiena-1.3.0/RSiena/R/printInitialDescription.r | 1192 +- RSiena-1.3.0/RSiena/R/robmon.r | 830 - RSiena-1.3.0/RSiena/R/siena07.r | 1022 +- RSiena-1.3.0/RSiena/R/siena07gui.r | 207 RSiena-1.3.0/RSiena/R/siena08.r | 1842 ++- RSiena-1.3.0/RSiena/R/sienaDataCreate.r | 4991 +++++----- RSiena-1.3.0/RSiena/R/sienaGOF.r | 2861 ++--- RSiena-1.3.0/RSiena/R/sienaModelCreate.r | 407 RSiena-1.3.0/RSiena/R/sienaRI.r | 1468 +- RSiena-1.3.0/RSiena/R/sienaRIDynamics.r | 1050 +- RSiena-1.3.0/RSiena/R/sienaTimeTest.r | 2550 ++--- RSiena-1.3.0/RSiena/R/sienaeffects.r | 694 - RSiena-1.3.0/RSiena/R/sienaprint.r | 3463 +++--- RSiena-1.3.0/RSiena/R/sienatable.r | 1373 +- RSiena-1.3.0/RSiena/R/sienautils.r | 1138 +- RSiena-1.3.0/RSiena/R/simstatsc.r | 356 RSiena-1.3.0/RSiena/R/terminateFRAN.r | 80 RSiena-1.3.0/RSiena/R/zzz.R | 112 RSiena-1.3.0/RSiena/cleanup | 11 RSiena-1.3.0/RSiena/cleanup.win | 23 RSiena-1.3.0/RSiena/configure | 2144 ---- RSiena-1.3.0/RSiena/configure.ac | 366 RSiena-1.3.0/RSiena/configure.win | 56 RSiena-1.3.0/RSiena/data/allEffects.R | 6 RSiena-1.3.0/RSiena/data/allEffects.csv | 1089 +- RSiena-1.3.0/RSiena/inst/CITATION | 38 RSiena-1.3.0/RSiena/inst/examples/Sampson_t2.txt | 210 RSiena-1.3.0/RSiena/inst/examples/Sampson_t3.txt | 266 RSiena-1.3.0/RSiena/inst/examples/Sampson_t4.txt | 202 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| 26 RSiena-1.3.0/RSiena/src/model/Model.h | 10 RSiena-1.3.0/RSiena/src/model/StatisticCalculator.cpp | 122 RSiena-1.3.0/RSiena/src/model/StatisticCalculator.h | 3 RSiena-1.3.0/RSiena/src/model/effects/AgreementTransitivityGMMEffect.h |only RSiena-1.3.0/RSiena/src/model/effects/AllEffects.h | 6 RSiena-1.3.0/RSiena/src/model/effects/AltersCovariateTotSimEffect.cpp | 3 RSiena-1.3.0/RSiena/src/model/effects/AverageAlterEffect.cpp | 16 RSiena-1.3.0/RSiena/src/model/effects/AverageAlterEffect.h | 2 RSiena-1.3.0/RSiena/src/model/effects/AverageInAlterEffect.cpp | 8 RSiena-1.3.0/RSiena/src/model/effects/BehaviorEffect.cpp | 16 RSiena-1.3.0/RSiena/src/model/effects/BehaviorEffect.h | 3 RSiena-1.3.0/RSiena/src/model/effects/ConstantEffect.cpp |only RSiena-1.3.0/RSiena/src/model/effects/ConstantEffect.h |only RSiena-1.3.0/RSiena/src/model/effects/CovariateDependentNetworkEffect.cpp | 94 RSiena-1.3.0/RSiena/src/model/effects/CovariateDependentNetworkEffect.h | 12 RSiena-1.3.0/RSiena/src/model/effects/CovariateSimilarityEffect.cpp | 4 RSiena-1.3.0/RSiena/src/model/effects/CovariateTransitiveTripletsEffect.cpp |only RSiena-1.3.0/RSiena/src/model/effects/CovariateTransitiveTripletsEffect.h |only RSiena-1.3.0/RSiena/src/model/effects/DoubleRecDegreeBehaviorEffect.cpp | 4 RSiena-1.3.0/RSiena/src/model/effects/EffectFactory.cpp | 402 RSiena-1.3.0/RSiena/src/model/effects/EffectFactory.h | 4 RSiena-1.3.0/RSiena/src/model/effects/HomCovariateTransitiveTripletsEffect.cpp | 52 RSiena-1.3.0/RSiena/src/model/effects/InteractionCovariateEffect.cpp | 4 RSiena-1.3.0/RSiena/src/model/effects/MaxAlterEffect.cpp | 14 RSiena-1.3.0/RSiena/src/model/effects/MaxAlterEffect.h | 1 RSiena-1.3.0/RSiena/src/model/effects/NetworkDependentBehaviorEffect.cpp | 145 RSiena-1.3.0/RSiena/src/model/effects/NetworkDependentBehaviorEffect.h | 14 RSiena-1.3.0/RSiena/src/model/effects/OutdegreeContinuousEffect.cpp | 6 RSiena-1.3.0/RSiena/src/model/effects/RealTransitivityGMMEffect.h |only RSiena-1.3.0/RSiena/src/model/effects/ReciprocityGMMEffect.h |only RSiena-1.3.0/RSiena/src/model/effects/SimilarityEffect.cpp | 245 RSiena-1.3.0/RSiena/src/model/effects/SimilarityEffect.h | 13 RSiena-1.3.0/RSiena/src/model/effects/SimilarityIndegreeEffect.cpp |only RSiena-1.3.0/RSiena/src/model/effects/SimilarityIndegreeEffect.h |only RSiena-1.3.0/RSiena/src/model/effects/SimilarityTransitiveTripletsEffect.cpp | 6 RSiena-1.3.0/RSiena/src/model/effects/SimilarityWEffect.cpp | 4 RSiena-1.3.0/RSiena/src/model/effects/generic/CovariateDistance2EgoAltSimNetworkFunction.h | 2 RSiena-1.3.0/RSiena/src/model/effects/generic/CovariateMixedNetworkAlterFunction.cpp | 2 RSiena-1.3.0/RSiena/src/model/effects/generic/CovariateMixedNetworkAlterFunction.h | 2 RSiena-1.3.0/RSiena/src/model/effects/generic/CovariateNetworkAlterFunction.cpp | 2 RSiena-1.3.0/RSiena/src/model/effects/generic/CovariateNetworkAlterFunction.h | 2 RSiena-1.3.0/RSiena/src/model/effects/generic/DyadicCovariateMixedNetworkAlterFunction.cpp |only RSiena-1.3.0/RSiena/src/model/effects/generic/DyadicCovariateMixedNetworkAlterFunction.h |only RSiena-1.3.0/RSiena/src/model/effects/generic/InStarFunction.cpp | 24 RSiena-1.3.0/RSiena/src/model/effects/generic/InStarFunction.h | 14 RSiena-1.3.0/RSiena/src/model/effects/generic/InStarsTimesDegreesFunction.cpp | 13 RSiena-1.3.0/RSiena/src/model/effects/generic/InStarsTimesDegreesFunction.h | 3 RSiena-1.3.0/RSiena/src/model/effects/generic/MixedTwoStepFunction.cpp |only RSiena-1.3.0/RSiena/src/model/effects/generic/MixedTwoStepFunction.h |only RSiena-1.3.0/RSiena/src/model/effects/generic/ReciprocatedTwoPathFunction.cpp | 27 RSiena-1.3.0/RSiena/src/model/effects/generic/ReciprocatedTwoPathFunction.h | 14 RSiena-1.3.0/RSiena/src/model/effects/generic/TwoStepFunction.cpp |only RSiena-1.3.0/RSiena/src/model/effects/generic/TwoStepFunction.h |only RSiena-1.3.0/RSiena/src/model/effects/generic/WeightedMixedTwoPathFunction.cpp |only RSiena-1.3.0/RSiena/src/model/effects/generic/WeightedMixedTwoPathFunction.h |only RSiena-1.3.0/RSiena/src/model/filters/DisjointFilter.cpp | 37 RSiena-1.3.0/RSiena/src/model/filters/DisjointFilter.h | 3 RSiena-1.3.0/RSiena/src/model/filters/HigherFilter.cpp | 36 RSiena-1.3.0/RSiena/src/model/filters/HigherFilter.h | 3 RSiena-1.3.0/RSiena/src/model/ml/Chain.cpp | 4 RSiena-1.3.0/RSiena/src/model/ml/MLSimulation.cpp | 4 RSiena-1.3.0/RSiena/src/model/ml/MLSimulation.h | 8 RSiena-1.3.0/RSiena/src/model/tables/MixedTwoPathTable.cpp | 21 RSiena-1.3.0/RSiena/src/model/tables/MixedTwoPathTable.h | 1 RSiena-1.3.0/RSiena/src/model/tables/TwoNetworkCache.cpp | 34 RSiena-1.3.0/RSiena/src/model/tables/TwoNetworkCache.h | 69 RSiena-1.3.0/RSiena/src/model/variables/BehaviorVariable.cpp | 14 RSiena-1.3.0/RSiena/src/model/variables/ContinuousVariable.cpp | 60 RSiena-1.3.0/RSiena/src/network/NetworkUtils.h | 4 RSiena-1.3.0/RSiena/src/network/OneModeNetwork.cpp | 9 RSiena-1.3.0/RSiena/src/network/OneModeNetwork.h | 2 RSiena-1.3.0/RSiena/src/network/UnionNeighborIterator.cpp |only RSiena-1.3.0/RSiena/src/network/UnionNeighborIterator.h |only RSiena-1.3.0/RSiena/src/siena07internals.cpp | 16 RSiena-1.3.0/RSiena/src/siena07models.cpp | 2 RSiena-1.3.0/RSiena/src/siena07setup.cpp | 1 RSiena-1.3.0/RSiena/src/sources.list | 2 RSiena-1.3.0/RSiena/tests/parallel.R | 308 RSiena-1.3.0/RSiena/tests/parallel.Rout.save | 1257 +- 205 files changed, 36123 insertions(+), 35749 deletions(-)
Title: Testing Neighbor Effects in Marker-Based Regressions
Description: To incorporate neighbor genotypic identity into genome-wide association studies, the package provides a set of functions for variation partitioning and association mapping. The theoretical background of the method is described in Sato et al. (2021) <doi:10.1038/s41437-020-00401-w>.
Author: Yasuhiro Sato [aut, cre] (<https://orcid.org/0000-0002-6466-723X>),
Eiji Yamamoto [aut],
Kentaro K. Shimizu [aut] (<https://orcid.org/0000-0002-6483-1781>),
Atsushi J. Nagano [aut] (<https://orcid.org/0000-0001-7891-5049>)
Maintainer: Yasuhiro Sato <sato.yasuhiro.36c@kyoto-u.jp>
Diff between rNeighborGWAS versions 1.2.3 dated 2021-04-07 and 1.2.4 dated 2021-05-10
DESCRIPTION | 6 +- MD5 | 4 - tests/testthat/test-neiGWAS.R | 114 +++++++++++++++++++++--------------------- 3 files changed, 62 insertions(+), 62 deletions(-)
Title: Create Colour Palettes Based on Famous Artworks from the
Rijksmuseum
Description: Create colour palettes based on famous paintings. Using the
function rijksPalette(), you can search for any painting in the collection
of the Dutch Rijksmuseum and generate a colour palette from it. This package
was developed using the fantastic Rijksmuseum API
<https://www.rijksmuseum.nl/api>.
Author: Erik-Jan van Kesteren [aut, cre]
Maintainer: Erik-Jan van Kesteren <e.vankesteren1@uu.nl>
Diff between rijkspalette versions 1.0.1 dated 2019-02-07 and 1.0.2 dated 2021-05-10
DESCRIPTION | 11 +++++------ MD5 | 6 +++--- R/helpers.R | 30 +++++++++++++++++++++++------- man/rijksQuery.Rd | 2 +- 4 files changed, 32 insertions(+), 17 deletions(-)
Title: Inbreeding-Purging Estimation in Pedigreed Populations
Description: Inbreeding-purging analysis of pedigreed populations, including the computation of the inbreeding coefficient, partial, ancestral and purged inbreeding coefficients, and measures of the opportunity of purging related to the individual reduction of inbreeding load.
In addition, functions to calculate the effective population size and other parameters relevant to population genetics are included.
Caballero A. and Toro M.A. (2000) <doi:10.1017/s0016672399004449>.
García-Dorado A., Wang J. and López-Cortegano E. (2016) <doi:10.1534/g3.116.032425>.
Gulisija D. and Crow J.F. (2007) <doi:10.1111/j.1558-5646.2007.00088.x>.
Gutiérrez J.P., Cervantes I., Goyache F. (2009) <doi:10.1111/j.1439-0388.2009.00810.x>.
López-Cortegano E., Bersabé D., Wang J., García-Dorado A. (2018) <doi:10.1038/s41437-017-0045-y>.
Author: Eugenio López-Cortegano [aut, cre]
Maintainer: Eugenio López-Cortegano <elcortegano@gmail.com>
Diff between purgeR versions 1.0 dated 2021-04-30 and 1.1 dated 2021-05-10
DESCRIPTION | 10 MD5 | 61 ++--- NEWS.md |only R/Nancestors.R | 3 R/RcppExports.R | 5 R/clean.R | 4 R/fitness.R | 6 R/generations.R | 3 R/inbreeding.R | 9 R/maternal.R | 3 R/partial.R | 2 R/rename.R | 11 inst/doc/ip.R | 86 +------ inst/doc/ip.Rmd | 84 +------ inst/doc/ip.html | 326 +++++++++++----------------- inst/doc/purgeR-tutorial.html | 12 - man/ancestors.Rd | 4 man/ip_F.Rd | 3 man/ip_Fa.Rd | 3 man/ip_Fij.Rd | 2 man/ip_g.Rd | 3 man/ped_clean.Rd | 4 man/ped_maternal.Rd | 3 man/ped_rename.Rd | 3 man/pop_t.Rd | 3 man/w_grandoffspring.Rd | 3 man/w_offspring.Rd | 3 src/RcppExports.cpp | 9 src/populationSize.cpp | 87 +++---- src/preProcessing.cpp | 1 tests/testthat/test_population_parameters.R | 9 vignettes/ip.Rmd | 84 +------ 32 files changed, 337 insertions(+), 512 deletions(-)
Title: Wrap Vectors in Markdown Formatting
Description: Ease the transition between R vectors and markdown
text. With 'gluedown' and 'rmarkdown', users can create traditional
vectors in R, glue those strings together with the markdown syntax,
and print those formatted vectors directly to the document. This
package primarily uses GitHub Flavored Markdown (GFM), an offshoot of
the unambiguous CommonMark specification by John MacFarlane (2019)
<https://spec.commonmark.org/>.
Author: Kiernan Nicholls [aut, cre]
Maintainer: Kiernan Nicholls <kiernann@protonmail.com>
Diff between gluedown versions 1.0.3 dated 2021-02-06 and 1.0.4 dated 2021-05-10
DESCRIPTION | 7 - MD5 | 22 +-- NEWS.md | 5 build/vignette.rds |binary inst/doc/github-spec.R | 43 ++++--- inst/doc/github-spec.Rmd | 35 +++--- inst/doc/github-spec.html | 211 +++++++++++++++++++------------------- inst/doc/literal-programming.R | 47 ++++++-- inst/doc/literal-programming.Rmd | 35 +++++- inst/doc/literal-programming.html | 16 ++ vignettes/github-spec.Rmd | 35 +++--- vignettes/literal-programming.Rmd | 35 +++++- 12 files changed, 304 insertions(+), 187 deletions(-)
Title: Some EM-Type Estimation Methods for the Heckman Selection Model
Description: Some EM-type algorithms to estimate parameters for the well-known Heckman selection model are provided in the package. Such algorithms are as follow: ECM(Expectation/Conditional Maximization), ECM(NR)(the Newton-Raphson method is adapted to the ECM) and ECME(Expectation/Conditional Maximization Either). Since the algorithms are based on the EM algorithm, they also have EM’s main advantages, namely, stability and ease of implementation. Further details and explanations of the algorithms can be found in Zhao et al. (2020) <doi: 10.1016/j.csda.2020.106930>.
Author: Kexuan Yang <717260446@qq.com>, Sang Kyu Lee <leesa111@msu.edu>, Jun Zhao <zhaojun2021@hotmail.com>, and Hyoung-Moon Kim <hmk966a@gmail.com >
Maintainer: Sang Kyu Lee <leesa111@msu.edu>
Diff between EMSS versions 1.0.2 dated 2020-08-28 and 1.1.0 dated 2021-05-10
DESCRIPTION | 13 MD5 | 11 NEWS.md |only R/EMSS.R | 953 ++++++++++++++++++++++++++++------------------------ man/EMSS.Rd | 2 man/summary.EMSS.Rd | 9 tests |only 7 files changed, 553 insertions(+), 435 deletions(-)
Title: Capture-Recapture Estimation using Bayesian Model Averaging
Description: Performs Bayesian model averaging for capture-recapture. This includes code to stratify records, check the strata for suitable overlap to be used for capture-recapture, and some functions to plot the estimated population size.
Author: James Johndrow [aut],
Kristian Lum [aut],
Patrick Ball [aut],
Olivier Binette [ctb, cre]
Maintainer: Olivier Binette <olivier.binette@gmail.com>
Diff between dga versions 2.0.0 dated 2021-05-04 and 2.0.1 dated 2021-05-10
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 4 ++++ src/utils.cpp | 2 +- 4 files changed, 12 insertions(+), 8 deletions(-)
Title: Comprehensive Science Mapping Analysis
Description: Tool for quantitative research in scientometrics and bibliometrics.
It provides various routines for importing bibliographic data from 'SCOPUS' (<https://scopus.com>),
'Clarivate Analytics Web of Science' (<https://www.webofknowledge.com/>), 'Digital Science Dimensions'
(<https://www.dimensions.ai/>), 'Cochrane Library' (<https://www.cochranelibrary.com/>), 'Lens' (<https://lens.org>),
and 'PubMed' (<https://pubmed.ncbi.nlm.nih.gov/>) databases, performing bibliometric analysis
and building networks for co-citation, coupling, scientific collaboration and co-word analysis.
Author: Massimo Aria [cre, aut],
Corrado Cuccurullo [aut]
Maintainer: Massimo Aria <aria@unina.it>
Diff between bibliometrix versions 3.0.4 dated 2021-01-19 and 3.1.1 dated 2021-05-10
bibliometrix-3.0.4/bibliometrix/inst/logo |only bibliometrix-3.1.1/bibliometrix/DESCRIPTION | 21 bibliometrix-3.1.1/bibliometrix/MD5 | 91 bibliometrix-3.1.1/bibliometrix/NAMESPACE | 38 bibliometrix-3.1.1/bibliometrix/NEWS | 21 bibliometrix-3.1.1/bibliometrix/R/Hindex.R | 108 - bibliometrix-3.1.1/bibliometrix/R/authorProdOverTime.R | 39 bibliometrix-3.1.1/bibliometrix/R/biblioAnalysis.R | 6 bibliometrix-3.1.1/bibliometrix/R/biblioshiny.R | 55 bibliometrix-3.1.1/bibliometrix/R/bradford.R | 9 bibliometrix-3.1.1/bibliometrix/R/conceptualStructure.R | 80 bibliometrix-3.1.1/bibliometrix/R/convert2df.R | 16 bibliometrix-3.1.1/bibliometrix/R/countries.R | 30 bibliometrix-3.1.1/bibliometrix/R/couplingMap.R | 79 bibliometrix-3.1.1/bibliometrix/R/csvLens2df.R |only bibliometrix-3.1.1/bibliometrix/R/csvScopus2df.R | 14 bibliometrix-3.1.1/bibliometrix/R/dimensions2df.R | 12 bibliometrix-3.1.1/bibliometrix/R/fieldByYear.R | 131 - bibliometrix-3.1.1/bibliometrix/R/histPlot.R | 102 - bibliometrix-3.1.1/bibliometrix/R/logo.R |only bibliometrix-3.1.1/bibliometrix/R/mergeDbSources.R | 1 bibliometrix-3.1.1/bibliometrix/R/networkPlot.R | 62 bibliometrix-3.1.1/bibliometrix/R/plotThematicEvolution.R | 94 bibliometrix-3.1.1/bibliometrix/R/rpys.R | 9 bibliometrix-3.1.1/bibliometrix/R/splitCommunities.R |only bibliometrix-3.1.1/bibliometrix/R/tableTag.R | 9 bibliometrix-3.1.1/bibliometrix/R/termExtraction.R | 159 - bibliometrix-3.1.1/bibliometrix/R/thematicEvolution.R | 178 - bibliometrix-3.1.1/bibliometrix/R/thematicMap.R | 24 bibliometrix-3.1.1/bibliometrix/R/threeFieldsPlot.R | 90 bibliometrix-3.1.1/bibliometrix/R/zzz.R | 55 bibliometrix-3.1.1/bibliometrix/build/partial.rdb |binary bibliometrix-3.1.1/bibliometrix/data/logo.rda |only bibliometrix-3.1.1/bibliometrix/inst/biblioshiny/rsconnect/shinyapps.io/massimoaria/biblioshiny.dcf | 6 bibliometrix-3.1.1/bibliometrix/inst/biblioshiny/server.R | 931 ++++++--- bibliometrix-3.1.1/bibliometrix/inst/biblioshiny/ui.R | 954 ++++++---- bibliometrix-3.1.1/bibliometrix/man/Hindex.Rd | 8 bibliometrix-3.1.1/bibliometrix/man/biblioshiny.Rd | 9 bibliometrix-3.1.1/bibliometrix/man/conceptualStructure.Rd | 4 bibliometrix-3.1.1/bibliometrix/man/convert2df.Rd | 7 bibliometrix-3.1.1/bibliometrix/man/couplingMap.Rd | 8 bibliometrix-3.1.1/bibliometrix/man/fieldByYear.Rd | 11 bibliometrix-3.1.1/bibliometrix/man/logo.Rd |only bibliometrix-3.1.1/bibliometrix/man/networkPlot.Rd | 3 bibliometrix-3.1.1/bibliometrix/man/splitCommunities.Rd |only bibliometrix-3.1.1/bibliometrix/man/tableTag.Rd | 4 bibliometrix-3.1.1/bibliometrix/man/termExtraction.Rd | 16 bibliometrix-3.1.1/bibliometrix/man/thematicEvolution.Rd | 4 bibliometrix-3.1.1/bibliometrix/man/thematicMap.Rd | 4 bibliometrix-3.1.1/bibliometrix/man/threeFieldsPlot.Rd | 12 50 files changed, 2296 insertions(+), 1218 deletions(-)
Title: Access the 'City of Vancouver' Open Data API
Description: Wrapper around the 'City of Vancouver' Open Data API <https://opendata.vancouver.ca/api/v2/console> to simplify and standardize access to 'City of Vancouver' open data.
Functionality to list the data catalogue and access data and geographic records.
Author: Jens von Bergmann
Maintainer: Jens von Bergmann <jens@mountainmath.ca>
Diff between VancouvR versions 0.1.2 dated 2021-01-13 and 0.1.3 dated 2021-05-10
DESCRIPTION | 9 +++---- MD5 | 18 +++++++-------- NEWS.md | 5 ++++ README.md | 3 -- build/vignette.rds |binary inst/doc/Demo.R | 2 - inst/doc/Demo.Rmd | 2 - inst/doc/Demo.html | 56 +++++++++++++++++++++++++------------------------ inst/doc/Isolines.html | 12 +++++++--- vignettes/Demo.Rmd | 2 - 10 files changed, 60 insertions(+), 49 deletions(-)
Title: Open Population Capture-Recapture
Description: Functions for non-spatial and spatial open-population capture-recapture analysis.
Author: Murray Efford [aut, cre] (<https://orcid.org/0000-0001-5231-5184>)
Maintainer: Murray Efford <murray.efford@otago.ac.nz>
Diff between openCR versions 1.5.0 dated 2020-12-13 and 2.0.1 dated 2021-05-10
openCR-1.5.0/openCR/R/plotKernel.R |only openCR-1.5.0/openCR/man/plotKernel.Rd |only openCR-1.5.0/openCR/tests/testthat/test-initial.R.$$$ |only openCR-2.0.1/openCR/DESCRIPTION | 13 openCR-2.0.1/openCR/MD5 | 118 - openCR-2.0.1/openCR/NAMESPACE | 52 openCR-2.0.1/openCR/NEWS | 44 openCR-2.0.1/openCR/R/JS.counts.R | 64 openCR-2.0.1/openCR/R/LLsurface.openCR.R | 10 openCR-2.0.1/openCR/R/PCH1.R | 6 openCR-2.0.1/openCR/R/RcppExports.R | 12 openCR-2.0.1/openCR/R/derived.r | 557 +++--- openCR-2.0.1/openCR/R/getfn.R | 46 openCR-2.0.1/openCR/R/geth.R | 4 openCR-2.0.1/openCR/R/kappaloglik.R | 44 openCR-2.0.1/openCR/R/kernel.R | 571 +++++- openCR-2.0.1/openCR/R/loglik.R | 364 ++-- openCR-2.0.1/openCR/R/logliksecr.R | 551 +++--- openCR-2.0.1/openCR/R/m.array.R | 72 openCR-2.0.1/openCR/R/make.table.R | 35 openCR-2.0.1/openCR/R/methods.R | 94 - openCR-2.0.1/openCR/R/moving.fit.R | 3 openCR-2.0.1/openCR/R/onLoad.R | 18 openCR-2.0.1/openCR/R/openCR.design.R | 446 +++-- openCR-2.0.1/openCR/R/openCR.esa.r | 79 openCR-2.0.1/openCR/R/openCR.fit.R | 1513 +++++++++--------- openCR-2.0.1/openCR/R/openCR.make.newdata.R | 219 +- openCR-2.0.1/openCR/R/openCR.pdot.r | 37 openCR-2.0.1/openCR/R/plot.openCR.R | 34 openCR-2.0.1/openCR/R/posterior2.R | 18 openCR-2.0.1/openCR/R/predict.openCR.R | 314 ++- openCR-2.0.1/openCR/R/prwisecr.R | 13 openCR-2.0.1/openCR/R/stratify.R |only openCR-2.0.1/openCR/R/summary.openCR.R | 2 openCR-2.0.1/openCR/R/utility.R | 407 +++- openCR-2.0.1/openCR/build/partial.rdb |only openCR-2.0.1/openCR/build/vignette.rds |binary openCR-2.0.1/openCR/inst/doc/openCR-vignette.R | 196 ++ openCR-2.0.1/openCR/inst/doc/openCR-vignette.Rmd | 243 ++ openCR-2.0.1/openCR/inst/doc/openCR-vignette.pdf |binary openCR-2.0.1/openCR/man/derived.Rd | 5 openCR-2.0.1/openCR/man/fieldvoleCH.Rd | 2 openCR-2.0.1/openCR/man/kernel.Rd | 41 openCR-2.0.1/openCR/man/make.table.Rd | 7 openCR-2.0.1/openCR/man/matchscale.Rd |only openCR-2.0.1/openCR/man/openCR-internal.Rd | 8 openCR-2.0.1/openCR/man/openCR-package.Rd | 4 openCR-2.0.1/openCR/man/openCR.design.Rd | 6 openCR-2.0.1/openCR/man/openCR.fit.Rd | 58 openCR-2.0.1/openCR/man/openCR.make.newdata.Rd | 14 openCR-2.0.1/openCR/man/pkernel.Rd |only openCR-2.0.1/openCR/man/plot.openCR.Rd | 3 openCR-2.0.1/openCR/man/predict.openCR.Rd | 11 openCR-2.0.1/openCR/man/strata.Rd |only openCR-2.0.1/openCR/man/stratify.Rd |only openCR-2.0.1/openCR/man/utility.Rd | 8 openCR-2.0.1/openCR/src/PCH1.cpp | 15 openCR-2.0.1/openCR/src/RcppExports.cpp | 34 openCR-2.0.1/openCR/src/kernel.cpp |only openCR-2.0.1/openCR/src/makegk.cpp | 61 openCR-2.0.1/openCR/src/prwisecrparallel.cpp | 21 openCR-2.0.1/openCR/src/utils.cpp | 418 +--- openCR-2.0.1/openCR/src/utils.h | 10 openCR-2.0.1/openCR/tests/testthat/test-initial.R | 48 openCR-2.0.1/openCR/vignettes/openCR-vignette.Rmd | 243 ++ 65 files changed, 4431 insertions(+), 2785 deletions(-)
Title: Fast Extraction from Raster Datasets using Polygons
Description: Provides a replacement for the 'extract' function from the 'raster' package
that is suitable for extracting raster values using 'sf' polygons.
Author: Daniel Baston [aut, cre],
ISciences, LLC [cph]
Maintainer: Daniel Baston <dbaston@isciences.com>
Diff between exactextractr versions 0.6.0 dated 2021-04-17 and 0.6.1 dated 2021-05-10
DESCRIPTION | 8 MD5 | 33 +-- NEWS.md | 8 R/exact_extract.R | 12 + configure | 20 - configure.ac | 2 man/exact_extract.Rd | 24 ++ src/Makevars.ucrt |only src/coverage_fraction.cpp | 60 +++-- src/exact_extract.cpp | 282 ++++++++++++++------------ src/exactextract/src/exactextract.cpp | 1 src/exactextract/src/gdal_dataset_wrapper.cpp | 1 src/exactextract/src/geos_utils.cpp | 2 src/exactextract/src/raster.h | 42 ++- src/exactextract/src/weighted_quantiles.cpp | 2 src/exactextract/test/test_raster.cpp | 27 ++ src/resample.cpp | 78 ++++--- tests/testthat/test_exact_extract.R | 16 + 18 files changed, 384 insertions(+), 234 deletions(-)
Title: Interfaces for Loading Datasets
Description: Visual interface for loading datasets in RStudio from all installed (including unloaded) packages, also includes command line interfaces.
Author: Bastiaan quast [aut, cre]
Maintainer: Bastiaan quast <bquast@gmail.com>
Diff between datasets.load versions 1.4.0 dated 2020-04-27 and 1.6.0 dated 2021-05-10
DESCRIPTION | 11 ++++++----- MD5 | 12 +++++++----- NEWS.md | 13 ++++--------- R/datasets.R | 2 +- README.md | 5 +++-- man/datasets.Rd | 4 ++-- tests |only 7 files changed, 23 insertions(+), 24 deletions(-)
Title: Generation of Code Names for Organizations, People, Projects,
and Whatever Else
Description: This creates code names that a user can consider for their organizations, their projects, themselves, people
in their organizations or projects, or whatever else. The user can also supply a numeric seed (and even a character seed)
for maximum reproducibility. Use is simple and the code names produced come in various types too, contingent on what the
user may be desiring as a code name or nickname.
Author: Steve Miller [aut, cre] (<https://orcid.org/0000-0003-4072-6263>)
Maintainer: Steve Miller <steven.v.miller@gmail.com>
Diff between codename versions 0.1.0 dated 2021-04-14 and 0.2.0 dated 2021-05-10
DESCRIPTION | 6 +-- MD5 | 34 ++++++++++++---------- NAMESPACE | 2 + NEWS.md | 11 +++++++ R/codename.R | 15 ++++++++- R/codename_message.R |only R/data.R | 14 ++++----- R/variety_pack.R |only README.md | 73 ++++++++++++++++++++++++++++-------------------- data/animals.rda |binary data/gods.rda |binary man/adjectives.Rd | 2 - man/animals.Rd | 2 - man/codename_message.Rd |only man/gods.Rd | 2 - man/nouns.Rd | 2 - man/variety_pack.Rd |only man/wu_adjs.Rd | 2 - man/wu_nouns.Rd | 2 - man/xkcd_colors.Rd | 2 - 20 files changed, 105 insertions(+), 64 deletions(-)
Title: Breaks for Additive Season and Trend
Description: Decomposition of time series into
trend, seasonal, and remainder components with methods for detecting and
characterizing abrupt changes within the trend and seasonal components. 'BFAST'
can be used to analyze different types of satellite image time series and can
be applied to other disciplines dealing with seasonal or non-seasonal time
series, such as hydrology, climatology, and econometrics. The algorithm can be
extended to label detected changes with information on the parameters of the
fitted piecewise linear models. 'BFAST' monitoring functionality is described
in Verbesselt et al. (2010) <doi:10.1016/j.rse.2009.08.014>. 'BFAST monitor'
provides functionality to detect disturbance in near real-time based on 'BFAST'-
type models, and is described in Verbesselt et al. (2012) <doi:10.1016/j.rse.2012.02.022>.
'BFAST Lite' approach is a flexible approach that handles missing data
without interpolation, and will be described in an upcoming paper.
Furthermore, different models can now be used to fit the
time series data and detect structural changes (breaks).
Author: Jan Verbesselt [aut],
Dainius Masiliunas [aut, cre] (<https://orcid.org/0000-0001-5654-1277>),
Achim Zeileis [aut],
Rob Hyndman [ctb],
Marius Appel [aut],
Martin Jung [ctb],
Andrei Mirt [ctb] (<https://orcid.org/0000-0003-3654-2090>),
Paulo Negri Bernardino [ctb],
Dongdong Kong [ctb] (<https://orcid.org/0000-0003-1836-8172>)
Maintainer: Dainius Masiliunas <pastas4@gmail.com>
Diff between bfast versions 1.6.0 dated 2021-05-03 and 1.6.1 dated 2021-05-10
DESCRIPTION | 19 +++++++++++-------- MD5 | 8 ++++---- NEWS | 4 ++++ build/partial.rdb |binary src/bfastts.cpp | 8 ++++++-- 5 files changed, 25 insertions(+), 14 deletions(-)
Title: Integration to 'Apache' 'Arrow'
Description: 'Apache' 'Arrow' <https://arrow.apache.org/> is a cross-language
development platform for in-memory data. It specifies a standardized
language-independent columnar memory format for flat and hierarchical data,
organized for efficient analytic operations on modern hardware. This
package provides an interface to the 'Arrow C++' library.
Author: Neal Richardson [aut, cre],
Ian Cook [aut],
Jonathan Keane [aut],
Romain François [aut] (<https://orcid.org/0000-0002-2444-4226>),
Jeroen Ooms [aut],
Javier Luraschi [ctb],
Jeffrey Wong [ctb],
Apache Arrow [aut, cph]
Maintainer: Neal Richardson <neal@ursalabs.org>
Diff between arrow versions 4.0.0 dated 2021-04-27 and 4.0.0.1 dated 2021-05-10
DESCRIPTION | 6 ++-- MD5 | 33 +++++++++++++------------ NEWS.md | 7 ++++- configure | 5 +++ configure.win | 2 - inst/build_arrow_static.sh | 7 +++-- inst/doc/arrow.Rmd | 2 - inst/doc/arrow.html | 2 - inst/doc/developing.Rmd | 25 ++++++++++--------- inst/doc/developing.html | 25 ++++++++++--------- src/Makevars.ucrt |only tests/testthat/helper-skip.R | 19 ++++++++++++++ tests/testthat/test-Array.R | 1 tests/testthat/test-arrow.R | 4 +++ tests/testthat/test-compute-aggregate.R | 12 +++++++-- tools/nixlibs.R | 41 +++++++++++++++++++------------- vignettes/arrow.Rmd | 2 - vignettes/developing.Rmd | 25 ++++++++++--------- 18 files changed, 137 insertions(+), 81 deletions(-)
Title: Raven Hydrological Modelling Framework R Support and Analysis
Description: Utilities for processing input and output files associated with the Raven Hydrological Modelling Framework. Includes various plotting functions, model diagnostics, reading output files into xts format, and support for writing Raven input files (rvt, rvh, rvc, etc.).
Author: Robert Chlumsky [cre, aut],
James Craig [ctb],
Genevieve Brown [ctb],
Leland Scantlebury [ctb],
Sarah Grass [ctb],
Simon Lin [ctb]
Maintainer: Robert Chlumsky <rchlumsk@uwaterloo.ca>
Diff between RavenR versions 2.0.1 dated 2020-11-19 and 2.0.9 dated 2021-05-10
RavenR-2.0.1/RavenR/man/rvn_col_transparent.Rd |only RavenR-2.0.1/RavenR/man/rvn_iscolour.Rd |only RavenR-2.0.9/RavenR/DESCRIPTION | 16 - RavenR-2.0.9/RavenR/MD5 | 122 ++++---- RavenR-2.0.9/RavenR/NAMESPACE | 24 + RavenR-2.0.9/RavenR/R/rvn_annual_quantiles.R | 7 RavenR-2.0.9/RavenR/R/rvn_annual_quantiles_plot.R | 4 RavenR-2.0.9/RavenR/R/rvn_custom_read.R | 30 +- RavenR-2.0.9/RavenR/R/rvn_forcings_read.R | 5 RavenR-2.0.9/RavenR/R/rvn_gen_gridweights.R | 262 ++++++++++++------ RavenR-2.0.9/RavenR/R/rvn_gridweights_write.R |only RavenR-2.0.9/RavenR/R/rvn_hyd_dygraph.R | 26 + RavenR-2.0.9/RavenR/R/rvn_hyd_extract.R | 88 ++---- RavenR-2.0.9/RavenR/R/rvn_hyd_plot.R | 56 +-- RavenR-2.0.9/RavenR/R/rvn_hyd_read.R | 12 RavenR-2.0.9/RavenR/R/rvn_netcdf_to_gridshp.R | 36 +- RavenR-2.0.9/RavenR/R/rvn_res_plot.R | 53 +-- RavenR-2.0.9/RavenR/R/rvn_res_read.R | 5 RavenR-2.0.9/RavenR/R/rvn_rvc_from_custom_output.R |only RavenR-2.0.9/RavenR/R/rvn_rvc_res.R | 2 RavenR-2.0.9/RavenR/R/rvn_rvc_write.R |only RavenR-2.0.9/RavenR/R/rvn_rvh_blankHRUdf.R | 2 RavenR-2.0.9/RavenR/R/rvn_rvh_blankSBdf.R | 2 RavenR-2.0.9/RavenR/R/rvn_rvh_cleanHRUs.R | 178 +++++++++--- RavenR-2.0.9/RavenR/R/rvn_rvh_read.R | 31 +- RavenR-2.0.9/RavenR/R/rvn_rvt_ECmet.R | 22 - RavenR-2.0.9/RavenR/R/rvn_rvt_obsfile_irregular.R |only RavenR-2.0.9/RavenR/R/rvn_rvt_obsweights.R | 4 RavenR-2.0.9/RavenR/R/rvn_rvt_read.R | 10 RavenR-2.0.9/RavenR/R/rvn_rvt_write.R | 6 RavenR-2.0.9/RavenR/R/rvn_rvt_wsc.R | 6 RavenR-2.0.9/RavenR/R/rvn_tidyhydat_sample.R | 2 RavenR-2.0.9/RavenR/R/rvn_utilities.R | 130 +++----- RavenR-2.0.9/RavenR/R/rvn_watershed_read.R | 5 RavenR-2.0.9/RavenR/R/rvn_watershedmeb_read.R | 5 RavenR-2.0.9/RavenR/R/rvn_weathercan_sample.R |only RavenR-2.0.9/RavenR/R/rvn_xts_plot.R |only RavenR-2.0.9/RavenR/README.md | 12 RavenR-2.0.9/RavenR/data/rvn_weathercan_sample.rda |only RavenR-2.0.9/RavenR/inst/extdata/GridWeights.rvt |only RavenR-2.0.9/RavenR/man/figures |only RavenR-2.0.9/RavenR/man/grapes-notin-grapes.Rd |only RavenR-2.0.9/RavenR/man/rvn_annual_quantiles.Rd | 7 RavenR-2.0.9/RavenR/man/rvn_annual_quantiles_plot.Rd | 4 RavenR-2.0.9/RavenR/man/rvn_custom_read.Rd | 5 RavenR-2.0.9/RavenR/man/rvn_forcings_read.Rd | 5 RavenR-2.0.9/RavenR/man/rvn_fortify_xts.Rd |only RavenR-2.0.9/RavenR/man/rvn_gen_gridweights.Rd | 40 +- RavenR-2.0.9/RavenR/man/rvn_gridweights_write.Rd |only RavenR-2.0.9/RavenR/man/rvn_hyd_dygraph.Rd | 12 RavenR-2.0.9/RavenR/man/rvn_hyd_extract.Rd | 8 RavenR-2.0.9/RavenR/man/rvn_hyd_plot.Rd | 4 RavenR-2.0.9/RavenR/man/rvn_hyd_read.Rd | 8 RavenR-2.0.9/RavenR/man/rvn_res_plot.Rd | 12 RavenR-2.0.9/RavenR/man/rvn_res_read.Rd | 5 RavenR-2.0.9/RavenR/man/rvn_rvc_from_custom_output.Rd |only RavenR-2.0.9/RavenR/man/rvn_rvc_write.Rd |only RavenR-2.0.9/RavenR/man/rvn_rvh_blankSBdf.Rd | 2 RavenR-2.0.9/RavenR/man/rvn_rvh_cleanhrus.Rd | 14 RavenR-2.0.9/RavenR/man/rvn_rvt_ECmet.Rd | 19 - RavenR-2.0.9/RavenR/man/rvn_rvt_obsfile_irregular.Rd |only RavenR-2.0.9/RavenR/man/rvn_rvt_read.Rd | 9 RavenR-2.0.9/RavenR/man/rvn_rvt_wsc.Rd | 6 RavenR-2.0.9/RavenR/man/rvn_tidyhydat_sample.Rd | 69 ++-- RavenR-2.0.9/RavenR/man/rvn_watershed_read.Rd | 5 RavenR-2.0.9/RavenR/man/rvn_watershedmeb_read.Rd | 5 RavenR-2.0.9/RavenR/man/rvn_weathercan_sample.Rd |only RavenR-2.0.9/RavenR/man/rvn_xts_plot.Rd |only 68 files changed, 863 insertions(+), 539 deletions(-)
Title: Bottom-Up Proteomics and LiP-MS Quality Control and Data
Analysis Tools
Description: Useful functions and workflows for proteomics quality control and data analysis of both limited proteolysis-coupled mass spectrometry (LiP-MS) (Feng et. al. (2014) <doi:10.1038/nbt.2999>) and regular bottom-up proteomics experiments. Data generated with search tools such as 'Spectronaut', 'MaxQuant' and 'Proteome Discover' can be easily used due to flexibility of functions.
Author: Jan-Philipp Quast [aut, cre],
Dina Schuster [aut],
ETH Zurich [cph, fnd]
Maintainer: Jan-Philipp Quast <quast@imsb.biol.ethz.ch>
Diff between protti versions 0.1.0 dated 2021-04-23 and 0.1.1 dated 2021-05-10
DESCRIPTION | 10 MD5 | 62 ++--- NAMESPACE | 3 NEWS.md | 7 R/diff_abundance.R | 32 ++ R/fetch_chebi.R | 2 R/fetch_kegg.R | 14 + R/fetch_uniprot.R | 40 +++ R/fetch_uniprot_proteome.R | 22 +- R/try_query.R | 78 ++++--- README.md | 124 ++++++----- inst/doc/data_analysis_dose_response_workflow.R | 19 - inst/doc/data_analysis_dose_response_workflow.Rmd | 64 +---- inst/doc/data_analysis_dose_response_workflow.html | 46 +--- inst/doc/data_analysis_single_dose_treatment_workflow.Rmd | 66 +++--- inst/doc/data_analysis_single_dose_treatment_workflow.html | 68 +++--- inst/doc/input_preparation_workflow.Rmd | 42 +-- inst/doc/input_preparation_workflow.html | 30 +- inst/doc/quality_control_workflow.Rmd | 46 ++-- inst/doc/quality_control_workflow.html | 34 +-- man/diff_abundance.Rd | 4 man/fetch_chebi.Rd | 2 man/fetch_kegg.Rd | 4 man/fetch_uniprot_proteome.Rd | 10 man/try_query.Rd | 21 - tests/testthat/test-auxiliary_functions.R | 140 ++++++------- tests/testthat/test-qc_functions.R | 30 +- tests/testthat/test-workflow.R | 2 vignettes/data_analysis_dose_response_workflow.Rmd | 64 +---- vignettes/data_analysis_single_dose_treatment_workflow.Rmd | 66 +++--- vignettes/input_preparation_workflow.Rmd | 42 +-- vignettes/quality_control_workflow.Rmd | 46 ++-- 32 files changed, 624 insertions(+), 616 deletions(-)
Title: Subset- And Name-Aware Array Utility Functions
Description: Stacking arrays according to dimension names, subset-aware
splitting and mapping of functions, intersecting along arbitrary
dimensions, converting to and from data.frames, and many other helper
functions.
Author: Michael Schubert <mschu.dev@gmail.com>
Maintainer: Michael Schubert <mschu.dev@gmail.com>
Diff between narray versions 0.4.1 dated 2018-08-18 and 0.4.1.1 dated 2021-05-10
DESCRIPTION | 9 - MD5 | 12 - build/vignette.rds |binary inst/doc/narray.R | 16 +- inst/doc/narray.Rmd | 2 inst/doc/narray.html | 328 +++++++++++++++------------------------------------ vignettes/narray.Rmd | 2 7 files changed, 117 insertions(+), 252 deletions(-)
Title: Miscellaneous Useful Functions Including LaTeX Tables, Kalman
Filtering and Development Tools
Description: Implementing various things including functions for LaTeX tables,
the Kalman filter, web scraping, development tools, relative risk and odds
ratio.
Author: Benjamin M. Taylor
Maintainer: Benjamin M. Taylor <benjamin.taylor.software@gmail.com>
Diff between miscFuncs versions 1.5 dated 2021-05-06 and 1.5-1 dated 2021-05-10
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/roxtext.R | 14 +++++++------- inst/doc/miscFuncs.pdf |binary 4 files changed, 13 insertions(+), 13 deletions(-)
Title: Good Regression
Description: Fit Good regression models to count data (Tur et al., 2021) <arXiv:2105.01557>. The package provides functions for model estimation and model prediction. Density, distribution function, quantile function and random generation for the Good distribution are also provided.
Author: Jordi Tur [aut, cre],
David Moriña [ctb],
Pere Puig [ctb],
Argimiro Arratia [ctb],
Alejandra Cabaña [ctb],
Amanda Fernández-Fontelo [aut]
Maintainer: Jordi Tur <jjtur@crm.cat>
Diff between good versions 1.0.0 dated 2021-05-06 and 1.0.1 dated 2021-05-10
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/glm.good.R | 6 +++--- man/glm.good.Rd | 6 +++--- 4 files changed, 12 insertions(+), 12 deletions(-)
Title: Evidential Clustering
Description: Various clustering algorithms that produce a credal partition,
i.e., a set of Dempster-Shafer mass functions representing the membership of objects
to clusters. The mass functions quantify the cluster-membership uncertainty of the
objects. The algorithms are: Evidential c-Means, Relational Evidential c-Means,
Constrained Evidential c-Means, Evidential Clustering, Constrained Evidential
Clustering, Evidential K-nearest-neighbor-based Clustering, Bootstrap Model-Based
Evidential Clustering, Belief Peak Evidential Clustering, Neural-Network-based
Evidential Clustering.
Author: Thierry Denoeux
Maintainer: Thierry Denoeux <tdenoeux@utc.fr>
Diff between evclust versions 2.0.0 dated 2021-03-05 and 2.0.1 dated 2021-05-10
DESCRIPTION | 13 ++++++------- MD5 | 24 ++++++++++++------------ NEWS | 6 ++++-- R/bootclus.R | 6 +++--- R/delta_Bel.R | 3 ++- R/kcevclus.R | 8 +++----- build/vignette.rds |binary inst/doc/evclust_vignette.R | 2 +- inst/doc/evclust_vignette.Rnw | 3 ++- inst/doc/evclust_vignette.pdf |binary man/bootclus.Rd | 4 ++-- man/delta_Bel.Rd | 1 + vignettes/evclust_vignette.Rnw | 3 ++- 13 files changed, 38 insertions(+), 35 deletions(-)
Title: Estimation, Simulation and Reliability of Drifting Markov Models
Description: Performs the drifting Markov models (DMM) which are
non-homogeneous Markov models designed for modeling the heterogeneities of
sequences in a more flexible way than homogeneous Markov chains or even
hidden Markov models. In this context, we developed an R package dedicated to
the estimation, simulation and the exact computation of associated reliability
of drifting Markov models. The implemented methods are described in
Vergne, N. (2008), <doi:10.2202/1544-6115.1326> and
Barbu, V.S., Vergne, N. (2019) <doi:10.1007/s11009-018-9682-8> .
Author: Vlad Stefan Barbu [aut],
Geoffray Brelurut [ctb],
Annthomy Gilles [ctb],
Arnaud Lefebvre [ctb],
Corentin Lothode [aut],
Victor Mataigne [ctb],
Alexandre Seiller [aut],
Nicolas Vergne [aut, cre]
Maintainer: Nicolas Vergne <nicolas.vergne@univ-rouen.fr>
Diff between drimmR versions 1.0.0 dated 2021-03-22 and 1.0.1 dated 2021-05-10
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- NEWS.md | 4 ++++ build/partial.rdb |binary 4 files changed, 12 insertions(+), 8 deletions(-)
Title: Accessing Statistics Canada Data Table and Vectors
Description: Searches for, accesses, and retrieves new-format and old-format Statistics Canada data
tables, as well as individual vectors, as tidy data frames. This package deals with encoding issues, allows for
bilingual English or French language data retrieval, and bundles convenience functions
to make it easier to work with retrieved table data. Optional caching features are provided.
Author: Jens von Bergmann [cre],
Dmitry Shkolnik [aut]
Maintainer: Jens von Bergmann <jens@mountainmath.ca>
Diff between cansim versions 0.3.6 dated 2021-05-08 and 0.3.7 dated 2021-05-10
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NEWS.md | 5 +++++ R/cansim_sql.R | 4 ++-- README.md | 6 +++--- inst/doc/cansim.html | 4 ++-- inst/doc/working_with_large_tables.html | 10 +++++----- man/csv2sqlite.Rd | 4 ++-- 8 files changed, 31 insertions(+), 26 deletions(-)
Title: Search and Download Data from the Swiss Federal Statistical
Office (BFS)
Description: Search and download data from the Swiss Federal Statistical Office <https://www.bfs.admin.ch/>.
Author: Felix Luginbuhl [aut, cre]
Maintainer: Felix Luginbuhl <felix.luginbuhl@protonmail.ch>
Diff between BFS versions 0.3.0 dated 2021-03-23 and 0.3.1 dated 2021-05-10
DESCRIPTION | 13 - MD5 | 11 NEWS.md | 9 R/bfs_get_catalog.R | 40 ++- R/main.R | 592 +++++++++++++++++++++------------------------------- R/utils.R |only README.md | 125 +++++----- 7 files changed, 352 insertions(+), 438 deletions(-)
Title: Access the 'Windsor.ai' API
Description: Collect multichannel marketing data from sources such as Google analytics, Facebook Ads, and many others using the 'Windsor.ai' API <https://www.windsor.ai/api-fields/>.
Author: Novica Nakov [aut, cre],
Windsor.ai [cph]
Maintainer: Novica Nakov <nnovica@gmail.com>
Diff between windsoraiR versions 0.1.1 dated 2021-04-28 and 0.1.2 dated 2021-05-10
DESCRIPTION | 7 ++-- MD5 | 15 +++++---- NEWS.md | 4 ++ R/data.R |only data |only inst/doc/basics.R | 13 +------- inst/doc/basics.Rmd | 15 ++------- inst/doc/basics.html | 78 +++++++++++++++++++++++++-------------------------- man/my_data.Rd |only vignettes/basics.Rmd | 15 ++------- 10 files changed, 67 insertions(+), 80 deletions(-)
Title: Statistical Modeling
Description: A collection of algorithms and functions to aid statistical modeling. Includes limiting dilution analysis (aka ELDA), growth curve comparisons, mixed linear models, heteroscedastic regression, inverse-Gaussian probability calculations, Gauss quadrature and a secure convergence algorithm for nonlinear models. Also includes advanced generalized linear model functions including Tweedie and Digamma distributional families and a secure convergence algorithm.
Author: Gordon Smyth [cre, aut], Yifang Hu [ctb], Peter Dunn [ctb], Belinda Phipson [ctb], Yunshun Chen [ctb]
Maintainer: Gordon Smyth <smyth@wehi.edu.au>
Diff between statmod versions 1.4.35 dated 2020-10-19 and 1.4.36 dated 2021-05-10
DESCRIPTION | 8 ++++---- MD5 | 23 ++++++++++++----------- build |only man/elda.Rd | 2 +- man/gauss.quad.Rd | 4 +++- man/gauss.quad.prob.Rd | 5 ++++- man/glmgam.Rd | 2 +- man/glmnbfit.Rd | 2 +- man/glmscoretest.Rd | 2 +- man/qresiduals.Rd | 2 +- man/tweedie.Rd | 2 +- tests/statmod-Tests.R | 2 +- tests/statmod-Tests.Rout.save | 8 ++++---- 13 files changed, 34 insertions(+), 28 deletions(-)
Title: Simulation of Cohort Platform Trials for Combination Treatments
Description: A collection of functions dedicated to simulating staggered entry platform
trials whereby the treatment under investigation is a combination of two
active compounds. In order to obtain approval for this combination therapy,
superiority of the combination over the two active compounds and superiority
of the two active compounds over placebo need to be demonstrated.
A more detailed description of the design can be found in
Meyer et al. <arXiv:2103.09547>.
Author: Elias Laurin Meyer [aut, cre]
Maintainer: Elias Laurin Meyer <elias.meyer@meduniwien.ac.at>
Diff between CohortPlat versions 1.0.0 dated 2021-01-25 and 1.0.1 dated 2021-05-10
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CohortPlat-1.0.1/CohortPlat/vignettes/my-vignette_cache/html/unnamed-chunk-9_010d2232ecfa40c844f8592fe413348e.rdx |only 132 files changed, 132 insertions(+), 1505 deletions(-)
Title: Kalman Filter and Smoother for Exponential Family State Space
Models
Description: State space modelling is an efficient and flexible framework for
statistical inference of a broad class of time series and other data. KFAS
includes computationally efficient functions for Kalman filtering, smoothing,
forecasting, and simulation of multivariate exponential family state space models,
with observations from Gaussian, Poisson, binomial, negative binomial, and gamma
distributions. See the paper by Helske (2017) <doi:10.18637/jss.v078.i10> for details.
Author: Jouni Helske [aut, cre] (<https://orcid.org/0000-0001-7130-793X>)
Maintainer: Jouni Helske <jouni.helske@iki.fi>
Diff between KFAS versions 1.4.4 dated 2021-01-21 and 1.4.5 dated 2021-05-10
ChangeLog | 9 DESCRIPTION | 8 MD5 | 31 +-- NAMESPACE | 1 R/KFAS-package.R | 6 R/KFS.R | 3 R/SSMcycle.R | 4 R/SSModel.R | 2 R/logLik.SSModel.R | 5 R/zzz.R |only build/vignette.rds |binary inst/doc/KFAS.R | 526 ++++++++++++++++++++++++++--------------------------- inst/doc/KFAS.pdf |binary man/KFAS.Rd | 2 man/SSModel.Rd | 4 man/alcohol.Rd | 2 man/sexratio.Rd | 2 17 files changed, 314 insertions(+), 291 deletions(-)
Title: Taxonomic Standardization of Plant Species Names
Description: Automated standardization of taxonomic names and removal of orthographic errors in plant species names using 'The Plant List' website (www.theplantlist.org).
Author: Luis Cayuela, Ildefonso Macarro, Anke Stein, Jari Oksanen
Maintainer: Luis Cayuela <luis.cayuela@urjc.es>
Diff between Taxonstand versions 2.3 dated 2021-03-22 and 2.4 dated 2021-05-10
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/TPLck.R | 4 ++-- inst/NEWS.Rd | 4 ++-- 4 files changed, 11 insertions(+), 11 deletions(-)
Title: Character String Processing Facilities
Description: A multitude of character string/text/natural language
processing tools: pattern searching (e.g., with 'Java'-like regular
expressions or the 'Unicode' collation algorithm), random string generation,
case mapping, string transliteration, concatenation, sorting, padding,
wrapping, Unicode normalisation, date-time formatting and parsing,
and many more. They are fast, consistent, convenient, and -
thanks to 'ICU' (International Components for Unicode) -
portable across all locales and platforms.
Author: Marek Gagolewski [aut, cre, cph] (<https://orcid.org/0000-0003-0637-6028>),
Bartek Tartanus [ctb],
and others (stringi source code);
IBM, Unicode, Inc. and others (ICU4C source code, Unicode Character Database)
Maintainer: Marek Gagolewski <marek@gagolewski.com>
Diff between stringi versions 1.5.3 dated 2020-09-09 and 1.6.1 dated 2021-05-10
stringi-1.5.3/stringi/src/icu61 |only stringi-1.5.3/stringi/src/icu61_common_c.txt |only stringi-1.5.3/stringi/src/icu61_common_cpp.txt |only stringi-1.5.3/stringi/src/icu61_i18n_c.txt |only stringi-1.5.3/stringi/src/icu61_i18n_cpp.txt |only stringi-1.5.3/stringi/src/icu61_stubdata_c.txt |only stringi-1.5.3/stringi/src/icu61_stubdata_cpp.txt |only stringi-1.6.1/stringi/DESCRIPTION | 22 stringi-1.6.1/stringi/INSTALL | 175 stringi-1.6.1/stringi/LICENSE | 7 stringi-1.6.1/stringi/MD5 | 2199 +++++----- stringi-1.6.1/stringi/NAMESPACE | 2 stringi-1.6.1/stringi/NEWS | 195 stringi-1.6.1/stringi/R/ICU_settings.R | 2 stringi-1.6.1/stringi/R/compare.R | 8 stringi-1.6.1/stringi/R/encoding.R | 4 stringi-1.6.1/stringi/R/encoding_conversion.R | 2 stringi-1.6.1/stringi/R/encoding_detection.R | 2 stringi-1.6.1/stringi/R/encoding_management.R | 2 stringi-1.6.1/stringi/R/escape.R | 5 stringi-1.6.1/stringi/R/files.R | 2 stringi-1.6.1/stringi/R/install.R | 126 stringi-1.6.1/stringi/R/internal_prepare_arg.R | 2 stringi-1.6.1/stringi/R/internal_test.R | 2 stringi-1.6.1/stringi/R/join.R | 2 stringi-1.6.1/stringi/R/length.R | 13 stringi-1.6.1/stringi/R/locale.R | 2 stringi-1.6.1/stringi/R/locale_management.R | 2 stringi-1.6.1/stringi/R/opts.R | 6 stringi-1.6.1/stringi/R/pad.R | 2 stringi-1.6.1/stringi/R/random.R | 2 stringi-1.6.1/stringi/R/reverse.R | 2 stringi-1.6.1/stringi/R/search.R | 2 stringi-1.6.1/stringi/R/search_count_4.R | 2 stringi-1.6.1/stringi/R/search_count_bound.R | 2 stringi-1.6.1/stringi/R/search_detect_4.R | 2 stringi-1.6.1/stringi/R/search_extract_4.R | 12 stringi-1.6.1/stringi/R/search_extract_bound.R | 2 stringi-1.6.1/stringi/R/search_locate_4.R | 9 stringi-1.6.1/stringi/R/search_locate_bound.R | 2 stringi-1.6.1/stringi/R/search_match_4.R | 2 stringi-1.6.1/stringi/R/search_replace_4.R | 10 stringi-1.6.1/stringi/R/search_split_4.R | 7 stringi-1.6.1/stringi/R/search_split_bound.R | 7 stringi-1.6.1/stringi/R/search_startsendswith_4.R | 2 stringi-1.6.1/stringi/R/search_subset_4.R | 2 stringi-1.6.1/stringi/R/sort.R | 89 stringi-1.6.1/stringi/R/stats.R | 2 stringi-1.6.1/stringi/R/stringi-package.R | 15 stringi-1.6.1/stringi/R/sub.R | 2 stringi-1.6.1/stringi/R/time_calendar.R | 2 stringi-1.6.1/stringi/R/time_format.R | 2 stringi-1.6.1/stringi/R/time_symbols.R | 2 stringi-1.6.1/stringi/R/time_zone.R | 2 stringi-1.6.1/stringi/R/todo_charclass.R | 2 stringi-1.6.1/stringi/R/todo_justify.R | 2 stringi-1.6.1/stringi/R/todo_rbnf.R | 2 stringi-1.6.1/stringi/R/todo_search_in.R | 2 stringi-1.6.1/stringi/R/todo_split.R | 2 stringi-1.6.1/stringi/R/trans_casemap.R | 20 stringi-1.6.1/stringi/R/trans_normalization.R | 2 stringi-1.6.1/stringi/R/trans_other.R | 2 stringi-1.6.1/stringi/R/trans_transliterate.R | 2 stringi-1.6.1/stringi/R/trim.R | 2 stringi-1.6.1/stringi/R/utils.R | 33 stringi-1.6.1/stringi/R/wrap.R | 3 stringi-1.6.1/stringi/cleanup | 2 stringi-1.6.1/stringi/configure | 1255 ++--- stringi-1.6.1/stringi/configure.ac | 1419 +++--- stringi-1.6.1/stringi/configure.win | 18 stringi-1.6.1/stringi/inst/AUTHORS | 85 stringi-1.6.1/stringi/inst/CITATION | 18 stringi-1.6.1/stringi/man/about_encoding.Rd | 2 stringi-1.6.1/stringi/man/about_locale.Rd | 1 stringi-1.6.1/stringi/man/about_search_boundaries.Rd | 1 stringi-1.6.1/stringi/man/about_search_coll.Rd | 1 stringi-1.6.1/stringi/man/about_stringi.Rd | 12 stringi-1.6.1/stringi/man/operator_compare.Rd | 1 stringi-1.6.1/stringi/man/operator_dollar.Rd | 13 stringi-1.6.1/stringi/man/stri_compare.Rd | 7 stringi-1.6.1/stringi/man/stri_count_boundaries.Rd | 1 stringi-1.6.1/stringi/man/stri_duplicated.Rd | 1 stringi-1.6.1/stringi/man/stri_enc_detect2.Rd | 1 stringi-1.6.1/stringi/man/stri_extract.Rd | 10 stringi-1.6.1/stringi/man/stri_extract_boundaries.Rd | 1 stringi-1.6.1/stringi/man/stri_locate.Rd | 7 stringi-1.6.1/stringi/man/stri_locate_boundaries.Rd | 1 stringi-1.6.1/stringi/man/stri_opts_brkiter.Rd | 4 stringi-1.6.1/stringi/man/stri_opts_collator.Rd | 1 stringi-1.6.1/stringi/man/stri_order.Rd | 9 stringi-1.6.1/stringi/man/stri_rank.Rd |only stringi-1.6.1/stringi/man/stri_replace.Rd | 8 stringi-1.6.1/stringi/man/stri_sort.Rd | 5 stringi-1.6.1/stringi/man/stri_sort_key.Rd | 16 stringi-1.6.1/stringi/man/stri_split.Rd | 5 stringi-1.6.1/stringi/man/stri_split_boundaries.Rd | 6 stringi-1.6.1/stringi/man/stri_trans_casemap.Rd | 13 stringi-1.6.1/stringi/man/stri_unescape_unicode.Rd | 3 stringi-1.6.1/stringi/man/stri_unique.Rd | 1 stringi-1.6.1/stringi/man/stri_width.Rd | 11 stringi-1.6.1/stringi/man/stri_wrap.Rd | 1 stringi-1.6.1/stringi/src/Makevars.in | 4 stringi-1.6.1/stringi/src/Makevars.win | 34 stringi-1.6.1/stringi/src/icu69 |only stringi-1.6.1/stringi/src/icu69_common_c.txt |only stringi-1.6.1/stringi/src/icu69_common_cpp.txt |only stringi-1.6.1/stringi/src/icu69_i18n_c.txt |only stringi-1.6.1/stringi/src/icu69_i18n_cpp.txt |only stringi-1.6.1/stringi/src/icu69_stubdata_c.txt |only stringi-1.6.1/stringi/src/icu69_stubdata_cpp.txt |only stringi-1.6.1/stringi/src/install.libs.R.in | 4 stringi-1.6.1/stringi/src/stri_ICU_settings.cpp | 2 stringi-1.6.1/stringi/src/stri_TODO_justify.cpp | 2 stringi-1.6.1/stringi/src/stri_TODO_splitpos.cpp | 2 stringi-1.6.1/stringi/src/stri_TODO_uchar.cpp | 2 stringi-1.6.1/stringi/src/stri_brkiter.cpp | 2 stringi-1.6.1/stringi/src/stri_brkiter.h | 2 stringi-1.6.1/stringi/src/stri_bytesearch_matcher.h | 2 stringi-1.6.1/stringi/src/stri_collator.cpp | 9 stringi-1.6.1/stringi/src/stri_common.cpp | 2 stringi-1.6.1/stringi/src/stri_compare.cpp | 2 stringi-1.6.1/stringi/src/stri_container_base.cpp | 2 stringi-1.6.1/stringi/src/stri_container_base.h | 2 stringi-1.6.1/stringi/src/stri_container_bytesearch.cpp | 2 stringi-1.6.1/stringi/src/stri_container_bytesearch.h | 2 stringi-1.6.1/stringi/src/stri_container_charclass.h | 2 stringi-1.6.1/stringi/src/stri_container_double.h | 2 stringi-1.6.1/stringi/src/stri_container_integer.h | 2 stringi-1.6.1/stringi/src/stri_container_listint.cpp | 2 stringi-1.6.1/stringi/src/stri_container_listint.h | 2 stringi-1.6.1/stringi/src/stri_container_listraw.cpp | 2 stringi-1.6.1/stringi/src/stri_container_listraw.h | 2 stringi-1.6.1/stringi/src/stri_container_listutf8.cpp | 2 stringi-1.6.1/stringi/src/stri_container_listutf8.h | 2 stringi-1.6.1/stringi/src/stri_container_logical.h | 2 stringi-1.6.1/stringi/src/stri_container_regex.cpp | 2 stringi-1.6.1/stringi/src/stri_container_regex.h | 2 stringi-1.6.1/stringi/src/stri_container_usearch.cpp | 8 stringi-1.6.1/stringi/src/stri_container_usearch.h | 2 stringi-1.6.1/stringi/src/stri_container_utf16.cpp | 2 stringi-1.6.1/stringi/src/stri_container_utf16.h | 2 stringi-1.6.1/stringi/src/stri_container_utf8.cpp | 2 stringi-1.6.1/stringi/src/stri_container_utf8.h | 2 stringi-1.6.1/stringi/src/stri_container_utf8_indexable.cpp | 2 stringi-1.6.1/stringi/src/stri_container_utf8_indexable.h | 2 stringi-1.6.1/stringi/src/stri_encoding_conversion.cpp | 2 stringi-1.6.1/stringi/src/stri_encoding_detection.cpp | 2 stringi-1.6.1/stringi/src/stri_encoding_management.cpp | 2 stringi-1.6.1/stringi/src/stri_escape.cpp | 2 stringi-1.6.1/stringi/src/stri_exception.cpp | 2 stringi-1.6.1/stringi/src/stri_exception.h | 2 stringi-1.6.1/stringi/src/stri_exports.h | 4 stringi-1.6.1/stringi/src/stri_external.h | 2 stringi-1.6.1/stringi/src/stri_interval.h | 2 stringi-1.6.1/stringi/src/stri_intvec.h | 2 stringi-1.6.1/stringi/src/stri_join.cpp | 2 stringi-1.6.1/stringi/src/stri_length.cpp | 87 stringi-1.6.1/stringi/src/stri_macros.h | 12 stringi-1.6.1/stringi/src/stri_messages.h | 2 stringi-1.6.1/stringi/src/stri_pad.cpp | 2 stringi-1.6.1/stringi/src/stri_prepare_arg.cpp | 10 stringi-1.6.1/stringi/src/stri_random.cpp | 2 stringi-1.6.1/stringi/src/stri_reverse.cpp | 2 stringi-1.6.1/stringi/src/stri_search_boundaries_count.cpp | 2 stringi-1.6.1/stringi/src/stri_search_boundaries_extract.cpp | 2 stringi-1.6.1/stringi/src/stri_search_boundaries_locate.cpp | 2 stringi-1.6.1/stringi/src/stri_search_boundaries_split.cpp | 2 stringi-1.6.1/stringi/src/stri_search_class_count.cpp | 2 stringi-1.6.1/stringi/src/stri_search_class_detect.cpp | 2 stringi-1.6.1/stringi/src/stri_search_class_extract.cpp | 2 stringi-1.6.1/stringi/src/stri_search_class_locate.cpp | 2 stringi-1.6.1/stringi/src/stri_search_class_replace.cpp | 2 stringi-1.6.1/stringi/src/stri_search_class_split.cpp | 2 stringi-1.6.1/stringi/src/stri_search_class_startsendswith.cpp | 2 stringi-1.6.1/stringi/src/stri_search_class_subset.cpp | 2 stringi-1.6.1/stringi/src/stri_search_class_trim.cpp | 2 stringi-1.6.1/stringi/src/stri_search_coll_count.cpp | 2 stringi-1.6.1/stringi/src/stri_search_coll_detect.cpp | 11 stringi-1.6.1/stringi/src/stri_search_coll_extract.cpp | 2 stringi-1.6.1/stringi/src/stri_search_coll_locate.cpp | 2 stringi-1.6.1/stringi/src/stri_search_coll_replace.cpp | 2 stringi-1.6.1/stringi/src/stri_search_coll_split.cpp | 2 stringi-1.6.1/stringi/src/stri_search_coll_startsendswith.cpp | 2 stringi-1.6.1/stringi/src/stri_search_coll_subset.cpp | 2 stringi-1.6.1/stringi/src/stri_search_common.cpp | 2 stringi-1.6.1/stringi/src/stri_search_fixed_count.cpp | 2 stringi-1.6.1/stringi/src/stri_search_fixed_detect.cpp | 2 stringi-1.6.1/stringi/src/stri_search_fixed_extract.cpp | 2 stringi-1.6.1/stringi/src/stri_search_fixed_locate.cpp | 2 stringi-1.6.1/stringi/src/stri_search_fixed_replace.cpp | 2 stringi-1.6.1/stringi/src/stri_search_fixed_split.cpp | 2 stringi-1.6.1/stringi/src/stri_search_fixed_startsendswith.cpp | 2 stringi-1.6.1/stringi/src/stri_search_fixed_subset.cpp | 2 stringi-1.6.1/stringi/src/stri_search_in.cpp | 2 stringi-1.6.1/stringi/src/stri_search_other_split.cpp | 2 stringi-1.6.1/stringi/src/stri_search_regex_count.cpp | 2 stringi-1.6.1/stringi/src/stri_search_regex_detect.cpp | 2 stringi-1.6.1/stringi/src/stri_search_regex_extract.cpp | 2 stringi-1.6.1/stringi/src/stri_search_regex_locate.cpp | 2 stringi-1.6.1/stringi/src/stri_search_regex_match.cpp | 2 stringi-1.6.1/stringi/src/stri_search_regex_replace.cpp | 2 stringi-1.6.1/stringi/src/stri_search_regex_split.cpp | 2 stringi-1.6.1/stringi/src/stri_search_regex_subset.cpp | 2 stringi-1.6.1/stringi/src/stri_sort.cpp | 142 stringi-1.6.1/stringi/src/stri_stats.cpp | 2 stringi-1.6.1/stringi/src/stri_string8.h | 2 stringi-1.6.1/stringi/src/stri_string8buf.h | 2 stringi-1.6.1/stringi/src/stri_stringi.cpp | 4 stringi-1.6.1/stringi/src/stri_stringi.h | 2 stringi-1.6.1/stringi/src/stri_sub.cpp | 2 stringi-1.6.1/stringi/src/stri_test.cpp | 2 stringi-1.6.1/stringi/src/stri_time_calendar.cpp | 2 stringi-1.6.1/stringi/src/stri_time_format.cpp | 2 stringi-1.6.1/stringi/src/stri_time_symbols.cpp | 2 stringi-1.6.1/stringi/src/stri_time_zone.cpp | 2 stringi-1.6.1/stringi/src/stri_trans_casemap.cpp | 84 stringi-1.6.1/stringi/src/stri_trans_normalization.cpp | 2 stringi-1.6.1/stringi/src/stri_trans_other.cpp | 2 stringi-1.6.1/stringi/src/stri_trans_transliterate.cpp | 2 stringi-1.6.1/stringi/src/stri_ucnv.cpp | 2 stringi-1.6.1/stringi/src/stri_ucnv.h | 2 stringi-1.6.1/stringi/src/stri_uloc.cpp | 2 stringi-1.6.1/stringi/src/stri_utils.cpp | 2 stringi-1.6.1/stringi/src/stri_wrap.cpp | 2 stringi-1.6.1/stringi/src/uconfig_local.h.in | 4 225 files changed, 3598 insertions(+), 3006 deletions(-)
Title: Find, Download and Process Sentinel-2 Data
Description: Functions to download Sentinel-2 optical images
and perform preliminary processing operations.
'sen2r' provides the instruments required to easily perform
(and eventually automate) the steps necessary to build a complete
Sentinel-2 processing chain.
A Graphical User Interface to facilitate data processing is also provided.
For additional documentation refer to the following article:
Ranghetti et al. (2020) <doi:10.1016/j.cageo.2020.104473>.
Author: Luigi Ranghetti [aut, cre] (<https://orcid.org/0000-0001-6207-5188>),
Lorenzo Busetto [aut] (<https://orcid.org/0000-0001-9634-6038>)
Maintainer: Luigi Ranghetti <luigi@ranghetti.info>
Diff between sen2r versions 1.4.3 dated 2021-05-04 and 1.4.4 dated 2021-05-10
DESCRIPTION | 6 +- MD5 | 74 ++++++++++++++-------------- NAMESPACE | 1 NEWS.md | 17 ++++++ R/s2_download.R | 32 +++++++++--- R/s2_list.R | 34 ++++++++----- R/s2_order.R | 16 ++++-- R/s2_tiles.R | 2 R/safe_is_online.R | 4 + R/safelist-class.R | 11 +++- R/scihub_login.R | 17 +++++- R/sen2r.R | 78 +++++++++++++++--------------- R/tiles_intersects.R | 2 build/partial.rdb |binary inst/WORDLIST | 1 man/s2_download.Rd | 5 + man/s2_list.Rd | 34 ++++++++----- man/s2_order.Rd | 4 + man/s2_tiles.Rd | 2 man/safe_is_online.Rd | 4 + man/safelist-class.Rd | 11 +++- man/scihub_login.Rd | 12 +++- man/sen2r.Rd | 78 +++++++++++++++--------------- man/tiles_intersects.Rd | 2 tests/testthat/setup-dependencies.R | 15 +++-- tests/testthat/test-s2_download.R | 1 tests/testthat/test-s2_list.R | 2 tests/testthat/test-s2_order.R | 1 tests/testthat/test-safelist-class.R | 1 tests/testthat/test-scihub_login.R | 1 tests/testthat/test-sen2cor.R | 4 - tests/testthat/test-sen2r-00_connection.R | 1 tests/testthat/test-sen2r-01_merge.R | 1 tests/testthat/test-sen2r-02_warp.R | 1 tests/testthat/test-sen2r-03_mask.R | 1 tests/testthat/test-sen2r-04_indices.R | 1 tests/testthat/test-sen2r-05_rgb.R | 1 tests/testthat/test-sen2r-06_ignorelist.R | 1 38 files changed, 305 insertions(+), 174 deletions(-)
Title: Geographic Information of Uruguay
Description: The toolbox have functions to load and process geographic information for Uruguay.
And extra-function to get address coordinates and orthophotos through the uruguayan 'IDE' API <https://www.gub.uy/infraestructura-datos-espaciales/tramites-y-servicios/servicios/servicio-direcciones-geograficas>.
Author: Richard Detomasi [aut, cre] (<https://orcid.org/0000-0002-6725-0261>),
Ministerio de Desarrollo Social, Uruguay (MIDES) [dtc],
Infraestrutura de Datos Espaciales, Uruguay (IDE) [dtc],
Servicio Geográfico Militar, Uruguay (SGM) [dtc],
Ministerio de Transporte y Obras Públicas, Uruguay (MTOP) [dtc],
Instituto Nacional de Estadística, Uruguay (INE) [dtc],
Instituto Geográfico Militar, Uruguay (IGM) [dtc],
Ministerio de Vivienda, Ordenamiento Territorial y Medio Ambiente,
Uruguay (MVOTMA) [dtc]
Maintainer: Richard Detomasi <richard.detomasi@gmail.com>
Diff between geouy versions 0.2.3 dated 2020-09-17 and 0.2.4 dated 2021-05-10
DESCRIPTION | 14 +-- MD5 | 40 +++++----- NAMESPACE | 25 ++++++ NEWS.md | 11 ++ R/data.R | 14 +++ R/geocode_ide_uy.R | 1 R/geouy.R | 2 R/load_geouy.R | 10 ++ R/plot_geouy.R | 6 - R/tiles_geouy.R |only R/utils.R | 2 README.md | 15 ++- data/metadata.rda |binary data/metadata_tables.rda |only inst/doc/geouy.Rmd | 2 inst/doc/geouy.html | 182 ++++++++++++++++++++++++++++------------------- man/is.uy5382.Rd | 2 man/loc_agr_ine.Rd | 67 ++++++++--------- man/metadata.Rd | 69 +++++++++-------- man/metadata_tables.Rd |only man/metadata_wms.Rd | 57 +++++++------- man/tiles_geouy.Rd |only vignettes/geouy.Rmd | 2 23 files changed, 314 insertions(+), 207 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-26 0.10.2
Title: Visible Vowels: Visualization of Vowel Variation
Description: Visualizes vowel variation in f0, F1, F2, F3 and duration.
Author: Wilbert Heeringa, Hans Van de Velde
Maintainer: Wilbert Heeringa <wjheeringa@gmail.com>
Diff between visvow versions 1.3.0 dated 2021-05-06 and 1.3.1 dated 2021-05-10
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/visvow.R | 16 ++++++++-------- build/partial.rdb |binary 4 files changed, 14 insertions(+), 14 deletions(-)
Title: Super Learner Prediction
Description: Implements the super learner prediction method and contains a
library of prediction algorithms to be used in the super learner.
Author: Eric Polley [aut, cre],
Erin LeDell [aut],
Chris Kennedy [aut],
Sam Lendle [ctb],
Mark van der Laan [aut, ths]
Maintainer: Eric Polley <epolley@uchicago.edu>
Diff between SuperLearner versions 2.0-26 dated 2019-12-10 and 2.0-28 dated 2021-05-10
DESCRIPTION | 25 - MD5 | 104 ++--- NAMESPACE | 1 R/SL.gam.R | 4 R/SL.gbm.R | 8 R/SL.xgboost.R | 10 R/method.R | 21 - build/vignette.rds |binary inst/NEWS | 6 inst/doc/Guide-to-SuperLearner.R | 158 ++++---- inst/doc/Guide-to-SuperLearner.Rmd | 46 +- inst/doc/Guide-to-SuperLearner.html | 500 +++++++++++--------------- man/CV.SuperLearner.Rd | 4 man/CVFolds.Rd | 2 man/SL.biglasso.Rd | 10 man/SL.glmnet.Rd | 2 man/SL.ksvm.Rd | 5 man/SampleSplitSuperLearner.Rd | 4 man/SuperLearner.Rd | 6 man/listWrappers.Rd | 2 man/plot.CV.SuperLearner.Rd | 2 man/predict.superlearner.Rd | 2 man/recombineCVSL.Rd | 2 man/recombineSL.Rd | 2 man/summary.CV.SuperLearner.Rd | 2 man/write.SL.template.Rd | 2 man/write.method.template.Rd | 2 man/write.screen.template.Rd | 2 tests/testthat/test-SampleSplitSuperLearner.R | 23 - tests/testthat/test-SuperLearner.R | 7 tests/testthat/test-XGBoost.R | 18 tests/testthat/test-bartMachine.R | 24 - tests/testthat/test-biglasso.R | 12 tests/testthat/test-cforest.R | 30 - tests/testthat/test-createLearner.R | 10 tests/testthat/test-extraTrees.R | 80 ++-- tests/testthat/test-glm.R | 20 - tests/testthat/test-glmnet.R | 8 tests/testthat/test-kernelKnn.R | 7 tests/testthat/test-knn.R | 8 tests/testthat/test-ksvm.R | 12 tests/testthat/test-lda.R | 9 tests/testthat/test-lm.R | 20 - tests/testthat/test-methodCCLS.R | 22 - tests/testthat/test-methodCCnloglik.R | 15 tests/testthat/test-methods.R | 98 ++--- tests/testthat/test-qda.R | 10 tests/testthat/test-randomForest.R | 94 ++-- tests/testthat/test-ranger.R | 14 tests/testthat/test-speedglm.R | 12 tests/testthat/test-speedlm.R | 11 tests/testthat/test-summaryCVSuperLearner.R | 17 vignettes/Guide-to-SuperLearner.Rmd | 46 +- 53 files changed, 799 insertions(+), 762 deletions(-)
Title: The Exterior Calculus
Description: Provides functionality for working with tensors, alternating
tensors, wedge products, Stokes's theorem, and related concepts
from the exterior calculus. Functionality for Grassman algebra
is provided. The canonical reference would be:
M. Spivak (1965, ISBN:0-8053-9021-9) "Calculus on Manifolds".
Author: Robin K. S. Hankin [aut, cre] (<https://orcid.org/0000-0001-5982-0415>)
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between stokes versions 1.0-7 dated 2021-04-27 and 1.0-8 dated 2021-05-10
stokes-1.0-7/stokes/inst/Alt.Rmd |only stokes-1.0-8/stokes/DESCRIPTION | 8 +-- stokes-1.0-8/stokes/MD5 | 29 +++++++----- stokes-1.0-8/stokes/R/mult.R | 18 +++---- stokes-1.0-8/stokes/build/partial.rdb |binary stokes-1.0-8/stokes/build/stokes.pdf |binary stokes-1.0-8/stokes/build/vignette.rds |binary stokes-1.0-8/stokes/inst/doc/Alt.R |only stokes-1.0-8/stokes/inst/doc/Alt.Rmd |only stokes-1.0-8/stokes/inst/doc/Alt.html |only stokes-1.0-8/stokes/inst/doc/inner.R |only stokes-1.0-8/stokes/inst/doc/inner.Rmd |only stokes-1.0-8/stokes/inst/doc/inner.html |only stokes-1.0-8/stokes/inst/doc/stokes.html | 60 +++++++------------------- stokes-1.0-8/stokes/man/Alt.Rd | 4 + stokes-1.0-8/stokes/man/consolidate.Rd | 20 ++------ stokes-1.0-8/stokes/man/inner.Rd | 21 ++++----- stokes-1.0-8/stokes/tests/testthat/test_alt.R | 19 ++++++-- stokes-1.0-8/stokes/vignettes/Alt.Rmd |only stokes-1.0-8/stokes/vignettes/inner.Rmd |only 20 files changed, 85 insertions(+), 94 deletions(-)
Title: Compute the Rectangular Statistical Cartogram
Description: Provides an interface and a C++ implementation of the RecMap MP2
construction heuristic (Panse C. (2018) <doi:10.18637/jss.v086.c01>).
This algorithm draws maps according to a given statistical value
(e.g., election results, population or epidemiological data).
The basic idea of the RecMap algorithm is that each map region
(e.g., different countries) is represented by a rectangle.
The area of each rectangle represents the statistical value given
as input (maintain zero cartographic error). Documentation about the usage
of the recmap algorithm is provided by a vignette included in this package.
Author: Christian Panse [aut, cre] (<https://orcid.org/0000-0003-1975-3064>)
Maintainer: Christian Panse <Christian.Panse@gmail.com>
Diff between recmap versions 1.0.7 dated 2020-02-20 and 1.0.9 dated 2021-05-10
DESCRIPTION | 19 ++--- MD5 | 30 ++++---- R/zzz.R | 1 README.md | 17 +++- build/partial.rdb |binary build/vignette.rds |binary data/jss2711.RData |binary inst/NEWS.Rd | 11 ++- inst/doc/recmap.html | 104 +++++++++++++++++++++--------- inst/include/recmap.h | 18 ++--- man/as.SpatialPolygonsDataFrame.recmap.Rd | 2 man/as.recmap.SpatialPolygonsDataFrame.Rd | 2 man/jss2711.Rd | 6 - man/recmap.Rd | 10 +- man/recmapGA.Rd | 2 src/Rrecmap.cpp | 1 16 files changed, 140 insertions(+), 83 deletions(-)
Title: Parse and Manipulate Research Patient Data Registry ('RPDR')
Text Queries
Description: Functions to load Research Patient Data Registry ('RPDR') text queries from Partners Healthcare institutions into R.
The package also provides helper functions to manipulate data and execute common procedures
such as finding the closest radiological exams considering a given timepoint. 'parseRPDR' currently supports
txt sources: "mrn", "con", "dem", "enc", "rdt", "lab", "med", "dia", "rfv", "car",
"dis", "end", "hnp", "opn", "pat", "prg", "pul", "rad" and "vis".
All functionalities are parallelized for fast and efficient analyses.
Author: Marton Kolossvary [aut, cre]
Maintainer: Marton Kolossvary <mkolossvary@mgh.harvard.edu>
Diff between parseRPDR versions 0.0.2 dated 2021-04-16 and 0.1.0 dated 2021-05-10
parseRPDR-0.0.2/parseRPDR/R/convert_rad.R |only parseRPDR-0.0.2/parseRPDR/R/load_rad.R |only parseRPDR-0.0.2/parseRPDR/man/convert_rad.Rd |only parseRPDR-0.0.2/parseRPDR/man/load_rad.Rd |only parseRPDR-0.1.0/parseRPDR/DESCRIPTION | 16 - parseRPDR-0.1.0/parseRPDR/MD5 | 68 +++-- parseRPDR-0.1.0/parseRPDR/NAMESPACE | 6 parseRPDR-0.1.0/parseRPDR/NEWS.md | 32 ++ parseRPDR-0.1.0/parseRPDR/R/convert_notes.R |only parseRPDR-0.1.0/parseRPDR/R/convert_rfv.R |only parseRPDR-0.1.0/parseRPDR/R/load_all.R | 69 ++++-- parseRPDR-0.1.0/parseRPDR/R/load_base.R | 4 parseRPDR-0.1.0/parseRPDR/R/load_con.R | 2 parseRPDR-0.1.0/parseRPDR/R/load_dem.R | 2 parseRPDR-0.1.0/parseRPDR/R/load_dia.R | 6 parseRPDR-0.1.0/parseRPDR/R/load_enc.R | 2 parseRPDR-0.1.0/parseRPDR/R/load_lab.R | 2 parseRPDR-0.1.0/parseRPDR/R/load_med.R | 4 parseRPDR-0.1.0/parseRPDR/R/load_mrn.R | 2 parseRPDR-0.1.0/parseRPDR/R/load_notes.R |only parseRPDR-0.1.0/parseRPDR/R/load_rdt.R | 4 parseRPDR-0.1.0/parseRPDR/R/load_rfv.R |only parseRPDR-0.1.0/parseRPDR/README.md | 17 - parseRPDR-0.1.0/parseRPDR/inst/doc/Using_parseRPDR.R | 17 + parseRPDR-0.1.0/parseRPDR/inst/doc/Using_parseRPDR.Rmd | 52 +++- parseRPDR-0.1.0/parseRPDR/inst/doc/Using_parseRPDR.html | 183 ++++++++-------- parseRPDR-0.1.0/parseRPDR/man/convert_notes.Rd |only parseRPDR-0.1.0/parseRPDR/man/convert_rfv.Rd |only parseRPDR-0.1.0/parseRPDR/man/load_all.Rd | 9 parseRPDR-0.1.0/parseRPDR/man/load_base.Rd | 2 parseRPDR-0.1.0/parseRPDR/man/load_con.Rd | 2 parseRPDR-0.1.0/parseRPDR/man/load_dem.Rd | 2 parseRPDR-0.1.0/parseRPDR/man/load_dia.Rd | 2 parseRPDR-0.1.0/parseRPDR/man/load_enc.Rd | 2 parseRPDR-0.1.0/parseRPDR/man/load_lab.Rd | 2 parseRPDR-0.1.0/parseRPDR/man/load_med.Rd | 2 parseRPDR-0.1.0/parseRPDR/man/load_mrn.Rd | 2 parseRPDR-0.1.0/parseRPDR/man/load_notes.Rd |only parseRPDR-0.1.0/parseRPDR/man/load_rdt.Rd | 2 parseRPDR-0.1.0/parseRPDR/man/load_rfv.Rd |only parseRPDR-0.1.0/parseRPDR/vignettes/Using_parseRPDR.Rmd | 52 +++- 41 files changed, 361 insertions(+), 206 deletions(-)
Title: Multimodal and Multilevel Network Analysis
Description: A set of tools that extend common social network analysis packages
for analysing multimodal and multilevel networks.
It includes functions for one- and two-mode (and sometimes three-mode)
centrality, centralization, clustering, and constraint,
as well as for one- and two-mode network regression and block-modelling.
All functions operate with matrices, edge lists,
and 'igraph', 'network'/'sna', and 'tidygraph' objects.
The package is released as a complement to
'Multimodal Political Networks' (2021, ISBN:9781108985000),
and includes various datasets used in the book.
Author: James Hollway [cph, cre, aut, ctb] (IHEID,
<https://orcid.org/0000-0002-8361-9647>)
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between migraph versions 0.6.3 dated 2021-04-26 and 0.6.5 dated 2021-05-10
migraph-0.6.3/migraph/R/data_elite_mex.R |only migraph-0.6.3/migraph/R/data_elite_usa_advice.R |only migraph-0.6.3/migraph/R/data_elite_usa_money.R |only migraph-0.6.5/migraph/DESCRIPTION | 14 - migraph-0.6.5/migraph/MD5 | 29 +- migraph-0.6.5/migraph/NAMESPACE | 12 migraph-0.6.5/migraph/NEWS.md | 31 ++ migraph-0.6.5/migraph/R/coercion.R | 4 migraph-0.6.5/migraph/R/data_elite.R |only migraph-0.6.5/migraph/R/plot.R | 170 +++++++++++++- migraph-0.6.5/migraph/R/project.R | 2 migraph-0.6.5/migraph/R/to.R |only migraph-0.6.5/migraph/man/mpn_elite_mex.Rd | 2 migraph-0.6.5/migraph/man/mpn_elite_usa_advice.Rd | 2 migraph-0.6.5/migraph/man/mpn_elite_usa_money.Rd | 2 migraph-0.6.5/migraph/man/plot_releases.Rd |only migraph-0.6.5/migraph/man/to.Rd |only migraph-0.6.5/migraph/tests/testthat/test-netlm.R | 2 migraph-0.6.5/migraph/tests/testthat/test-plot_releases.R |only migraph-0.6.5/migraph/tests/testthat/test-to.R |only 20 files changed, 239 insertions(+), 31 deletions(-)
Title: Interactive Statistical Data Visualization
Description: An extendable toolkit for interactive data visualization and exploration.
Author: Adrian Waddell [aut],
R. Wayne Oldford [aut, cre, ths],
Zehao Xu [ctb],
Martin Gauch [ctb]
Maintainer: R. Wayne Oldford <rwoldford@uwaterloo.ca>
Diff between loon versions 1.3.5 dated 2021-05-06 and 1.3.6 dated 2021-05-10
DESCRIPTION | 8 MD5 | 33 - R/l_bind.R | 8 R/l_isLoonWidget.R | 23 - R/loonGrob_l_facet_grid.R | 2 R/loonGrob_l_facet_wrap.R | 2 build/vignette.rds |binary inst/doc/introduction.html | 627 +++++++++++-------------------- inst/doc/logicalQueries.html | 339 ++++------------ inst/doc/savingLoonPlots.html | 382 +++++------------- inst/doc/teaching-example-smoothing.html | 558 +++++++++------------------ man/l_bind_context.Rd | 2 man/l_bind_glyph.Rd | 2 man/l_bind_layer.Rd | 2 man/l_bind_navigator.Rd | 2 man/l_isLoonWidget.Rd | 2 tests/testthat/test_facets.R | 10 tests/testthat/test_isLoonWidget.R |only 18 files changed, 683 insertions(+), 1319 deletions(-)
Title: API Client for Fantasy Football League Platforms
Description: Helps access various Fantasy Football APIs by handling
authentication and rate-limiting, forming appropriate calls, and
returning tidy dataframes which can be easily connected to other data
sources.
Author: Tan Ho [aut, cre],
Tony ElHabr [ctb],
Joe Sydlowski [ctb]
Maintainer: Tan Ho <tan@tanho.ca>
Diff between ffscrapr versions 1.4.1 dated 2021-04-18 and 1.4.2 dated 2021-05-10
DESCRIPTION | 6 MD5 | 250 ++++++++++++++++---------------- NEWS.md | 15 + R/0_generics.R | 34 ++-- R/0_helpers.R | 9 - R/0_utils.R | 2 R/1_import_dp.R | 6 R/1_import_nflfastr.R | 6 R/espn__helpers.R | 10 - R/espn_api.R | 10 - R/espn_connect.R | 2 R/espn_draft.R | 2 R/espn_draftpicks.R | 2 R/espn_franchises.R | 2 R/espn_league.R | 2 R/espn_players.R | 2 R/espn_playerscores.R | 2 R/espn_potentialpoints.R | 2 R/espn_rosters.R | 10 - R/espn_schedule.R | 2 R/espn_scoring.R | 2 R/espn_scoringhistory.R | 6 R/espn_standings.R | 2 R/espn_starterpositions.R | 2 R/espn_starters.R | 2 R/espn_transactions.R | 2 R/espn_userleagues.R | 2 R/flea_api.R | 4 R/flea_connect.R | 2 R/flea_draft.R | 2 R/flea_draftpicks.R | 2 R/flea_franchises.R | 2 R/flea_league.R | 2 R/flea_players.R | 2 R/flea_playerscores.R | 2 R/flea_rosters.R | 2 R/flea_schedule.R | 2 R/flea_scoring.R | 2 R/flea_scoringhistory.R | 18 +- R/flea_standings.R | 2 R/flea_starterpositions.R | 2 R/flea_starters.R | 2 R/flea_transactions.R | 2 R/flea_userleagues.R | 6 R/mfl_api.R | 6 R/mfl_connect.R | 4 R/mfl_draft.R | 2 R/mfl_draftpicks.R | 2 R/mfl_franchises.R | 2 R/mfl_league.R | 2 R/mfl_players.R | 21 +- R/mfl_playerscores.R | 2 R/mfl_rosters.R | 2 R/mfl_schedule.R | 2 R/mfl_scoring.R | 4 R/mfl_scoringhistory.R | 16 +- R/mfl_standings.R | 2 R/mfl_starterpositions.R | 2 R/mfl_starters.R | 2 R/mfl_transactions.R | 2 R/mfl_userleagues.R | 2 R/sleeper_api.R | 4 R/sleeper_connect.R | 2 R/sleeper_draft.R | 2 R/sleeper_draftpicks.R | 2 R/sleeper_franchises.R | 2 R/sleeper_league.R | 2 R/sleeper_players.R | 4 R/sleeper_playerscores.R | 2 R/sleeper_rosters.R | 2 R/sleeper_schedule.R | 2 R/sleeper_scoring.R | 2 R/sleeper_scoringhistory.R | 6 R/sleeper_standings.R | 2 R/sleeper_starterpositions.R | 2 R/sleeper_starters.R | 2 R/sleeper_transactions.R | 4 R/sleeper_userleagues.R | 6 README.md | 24 +-- inst/doc/espn_basics.R | 6 inst/doc/espn_basics.Rmd | 6 inst/doc/espn_basics.html | 6 inst/doc/espn_getendpoint.R | 6 inst/doc/espn_getendpoint.Rmd | 6 inst/doc/ffscrapr_scoringhistory.R | 4 inst/doc/ffscrapr_scoringhistory.Rmd | 4 inst/doc/fleaflicker_basics.R | 6 inst/doc/fleaflicker_basics.Rmd | 6 inst/doc/fleaflicker_getendpoint.R | 6 inst/doc/fleaflicker_getendpoint.Rmd | 6 inst/doc/mfl_basics.R | 6 inst/doc/mfl_basics.Rmd | 6 inst/doc/mfl_basics.html | 42 ++--- inst/doc/mfl_getendpoint.R | 6 inst/doc/mfl_getendpoint.Rmd | 6 inst/doc/sleeper_basics.R | 6 inst/doc/sleeper_basics.Rmd | 6 inst/doc/sleeper_basics.html | 34 ++-- inst/doc/sleeper_getendpoint.R | 6 inst/doc/sleeper_getendpoint.Rmd | 6 inst/doc/sleeper_getendpoint.html | 8 - man/dot-add_allplay.Rd | 4 man/ff_connect.Rd | 4 man/ff_draft.Rd | 2 man/ff_playerscores.Rd | 2 man/ff_rosters.Rd | 6 man/ff_transactions.Rd | 2 man/ff_userleagues.Rd | 4 man/fleaflicker_userleagues.Rd | 2 man/mfl_connect.Rd | 2 man/nflfastr_stat_mapping.Rd | 6 man/pipe.Rd | 2 man/release_bullets.Rd | 24 +-- man/sleeper_userleagues.Rd | 2 tests/testthat/setup.R | 6 tests/testthat/test-ff_rosters.R | 5 tests/testthat/test-ff_scoringhistory.R | 4 vignettes/espn_basics.Rmd | 6 vignettes/espn_getendpoint.Rmd | 6 vignettes/ffscrapr_scoringhistory.Rmd | 4 vignettes/fleaflicker_basics.Rmd | 6 vignettes/fleaflicker_getendpoint.Rmd | 6 vignettes/mfl_basics.Rmd | 6 vignettes/mfl_getendpoint.Rmd | 6 vignettes/sleeper_basics.Rmd | 6 vignettes/sleeper_getendpoint.Rmd | 6 126 files changed, 485 insertions(+), 435 deletions(-)
Title: Access the Bioconductor Project Package Repository
Description: A convenient tool to install and update Bioconductor packages.
Author: Martin Morgan [aut] (<https://orcid.org/0000-0002-5874-8148>),
Marcel Ramos [ctb, cre] (<https://orcid.org/0000-0002-3242-0582>)
Maintainer: Marcel Ramos <marcel.ramos@roswellpark.org>
Diff between BiocManager versions 1.30.13 dated 2021-05-07 and 1.30.14 dated 2021-05-10
DESCRIPTION | 6 MD5 | 18 NEWS | 11 R/inet.R | 20 R/install.R | 12 R/version.R | 30 - R/zzz.R | 16 build/vignette.rds |binary inst/doc/BiocManager.html | 944 +++++++++++++++++++----------------------- tests/testthat/test_version.R | 8 10 files changed, 506 insertions(+), 559 deletions(-)
Title: Clustering and Model Selection with the Integrated
Classification Likelihood
Description: An ensemble of algorithms that enable the clustering of networks and data matrix such as counts matrix with different type of generative models. Model selection and clustering is performed in combination by optimizing the Integrated Classification Likelihood (which is equivalent to minimizing the description length). Several models are available such as: Stochastic Block Model, degree corrected Stochastic Block Model, Mixtures of Multinomial, Latent Block Model. The optimization is performed thanks to a combination of greedy local search and a genetic algorithm (see <arXiv:2002:11577> for more details).
Author: Etienne Côme [aut, cre],
Nicolas Jouvin [aut]
Maintainer: Etienne Côme <etienne.come@univ-eiffel.fr>
Diff between greed versions 0.5.0 dated 2021-04-21 and 0.5.1 dated 2021-05-10
DESCRIPTION | 22 +-- MD5 | 152 ++++++++++++++---------- NAMESPACE | 5 NEWS.md |only R/RcppExports.R | 16 -- R/alg_classes.R | 33 ++++- R/cleanpath.R | 10 - R/coclust_dcsbm.R | 65 ++++++++-- R/data.R | 33 +++++ R/dcsbm.R | 82 +++++++++++-- R/diaggmm.R |only R/fit_classes.R | 3 R/gmm.R | 90 ++++++++++++-- R/misc.R | 8 + R/misssbm.R | 106 +++++++++++++++- R/mm.R | 53 ++++++++ R/multsbm.R | 55 ++++++++ R/mvmreg.R | 95 +++++++++++++-- R/plot.R | 90 ++++++++++++++ R/sbm.R | 56 ++++++++ README.md | 49 ++++--- build/vignette.rds |binary data/fashion.rda |only inst/doc/GMM.R |only inst/doc/GMM.Rmd |only inst/doc/GMM.html |only inst/doc/graph-clustering-with-sbm.html | 25 ++- man/co_dcsbm-class.Rd | 5 man/coef-co_dcsbm_fit-method.Rd |only man/coef-dcsbm_fit-method.Rd |only man/coef-diaggmm_fit-method.Rd |only man/coef-gmm_fit-method.Rd |only man/coef-misssbm_fit-method.Rd |only man/coef-mm_fit-method.Rd |only man/coef-multsbm_fit-method.Rd |only man/coef-mvmreg_fit-method.Rd |only man/coef-sbm_fit-method.Rd |only man/dcsbm-class.Rd | 6 man/dcsbm_fit-class.Rd | 6 man/diaggmm-class.Rd |only man/diaggmm_fit-class.Rd |only man/diaggmm_path-class.Rd |only man/fashion.Rd |only man/figures/cut-1.png |binary man/figures/future-1.png |binary man/figures/plot-1.png |binary man/figures/tree-1.png |binary man/gmm-class.Rd | 18 +- man/gmm_fit-class.Rd | 2 man/gmmpairs.Rd |only man/greed.Rd | 2 man/greed_cond.Rd | 2 man/icl_fit-class.Rd | 2 man/misssbm_fit-class.Rd | 2 man/misssbm_path-class.Rd | 18 ++ man/mvmreg-class.Rd | 17 ++ man/plot-diaggmm_path-missing-method.Rd |only man/plot-misssbm_fit-missing-method.Rd | 6 man/plot-misssbm_path-missing-method.Rd | 6 src/CoDcSbm.cpp | 19 ++- src/CoDcSbm.h | 3 src/DcSbm.cpp | 20 ++- src/DcSbm.h | 3 src/Fit.cpp | 52 +++++--- src/Gmm.cpp | 49 ++++--- src/Gmm.h | 2 src/IclModel.cpp | 13 -- src/IclModel.h | 6 src/MarSbm.cpp | 2 src/MarSbm.h | 2 src/MarSbmUndirected.cpp | 2 src/MarSbmUndirected.h | 2 src/MissSbm.cpp | 14 +- src/MissSbm.h | 2 src/Mm.cpp | 13 +- src/Mm.h | 2 src/MultSbm.cpp | 12 - src/MultSbm.h | 2 src/Mvmregcomp.cpp | 33 +++-- src/Mvmregcomp.h | 2 src/RcppExports.cpp | 67 ---------- src/Sbm.cpp | 9 - src/Sbm.h | 2 src/SphericalGmm.cpp |only src/SphericalGmm.h |only src/gicl_tools.cpp | 201 +++++++++++--------------------- src/gicl_tools.h | 27 ---- tests/testthat/test_diaggmm.R |only tests/testthat/test_mvmreg.R |only vignettes/GMM.Rmd |only 90 files changed, 1175 insertions(+), 526 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-02-03 0.2.1
2021-01-21 0.2.0
2020-11-24 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-22 2.0.2
2020-11-14 2.0.1
2020-03-14 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-11-10 1.0.0
2017-05-02 0.1
Title: An Interactive Editor for Viewing, Entering, Filtering & Editing
Data
Description: An interactive editor built on 'rhandsontable' to allow the
interactive viewing, entering, filtering and editing of data in R
<https://dillonhammill.github.io/DataEditR/>.
Author: Dillon Hammill [aut, cre] (<https://orcid.org/0000-0002-1407-7223>)
Maintainer: Dillon Hammill <Dillon.Hammill@anu.edu.au>
Diff between DataEditR versions 0.0.9 dated 2020-12-12 and 0.1.1 dated 2021-05-10
DESCRIPTION | 13 ++++++------- MD5 | 24 ++++++++++++------------ NEWS.md | 11 +++++++++++ R/dataEdit.R | 2 ++ R/dataFilter.R | 9 +++++---- R/dataInput.R | 8 ++++++-- R/dataSelect.R | 8 ++------ R/data_edit.R | 22 +++++++++++++--------- README.md | 19 +++++++++---------- man/dataEdit.Rd | 3 +++ man/dataFilter.Rd | 8 +++++--- man/dataInput.Rd | 6 +++++- man/dataSelect.Rd | 8 ++------ 13 files changed, 81 insertions(+), 60 deletions(-)
Title: Global Value Chains Tools
Description: Several tools for Global Value Chain ('GVC') analysis are
implemented.
Author: Bastiaan Quast [aut, cre],
Victor Kummritz [aut]
Maintainer: Bastiaan Quast <bquast@gmail.com>
Diff between gvc versions 5.2.0 dated 2020-04-23 and 6.0.0 dated 2021-05-10
gvc-5.2.0/gvc/NEWS |only gvc-6.0.0/gvc/DESCRIPTION | 10 gvc-6.0.0/gvc/MD5 | 54 ++-- gvc-6.0.0/gvc/NEWS.md |only gvc-6.0.0/gvc/R/dfddva.R | 1 gvc-6.0.0/gvc/R/dfdfva.R | 1 gvc-6.0.0/gvc/R/downstream.R | 1 gvc-6.0.0/gvc/R/e2r.R | 1 gvc-6.0.0/gvc/R/ffddva.R | 1 gvc-6.0.0/gvc/R/i2e.R | 1 gvc-6.0.0/gvc/R/nrca.R | 1 gvc-6.0.0/gvc/R/upstream.R | 1 gvc-6.0.0/gvc/README.md | 46 +-- gvc-6.0.0/gvc/build/vignette.rds |binary gvc-6.0.0/gvc/inst/doc/gvc.R | 1 gvc-6.0.0/gvc/inst/doc/gvc.Rmd | 1 gvc-6.0.0/gvc/inst/doc/gvc.html | 364 ++++++++++++------------------- gvc-6.0.0/gvc/man/dfddva.Rd | 1 gvc-6.0.0/gvc/man/dfdfva.Rd | 1 gvc-6.0.0/gvc/man/downstream.Rd | 1 gvc-6.0.0/gvc/man/e2r.Rd | 1 gvc-6.0.0/gvc/man/ffddva.Rd | 1 gvc-6.0.0/gvc/man/i2e.Rd | 1 gvc-6.0.0/gvc/man/nrca.Rd | 1 gvc-6.0.0/gvc/man/upstream.Rd | 1 gvc-6.0.0/gvc/tests/testthat/test_e2r.R | 1 gvc-6.0.0/gvc/tests/testthat/test_i2e.R | 1 gvc-6.0.0/gvc/tests/testthat/test_nrca.R | 1 gvc-6.0.0/gvc/vignettes/gvc.Rmd | 1 29 files changed, 222 insertions(+), 274 deletions(-)
Title: Conditioned Latin Hypercube Sampling
Description: Conditioned Latin hypercube sampling, as published by Minasny and McBratney (2006) <DOI:10.1016/j.cageo.2005.12.009>. This method proposes to stratify sampling in presence of ancillary data. An extension of this method, which propose to associate a cost to each individual and take it into account during the optimisation process, is also proposed (Roudier et al., 2012, <DOI:10.1201/b12728>).
Author: Pierre Roudier [aut, cre],
Colby Brugnard [ctb],
Dylan Beaudette [ctb],
Benjamin Louis [ctb],
Kiri Daust [ctb],
David Clifford [ctb]
Maintainer: Pierre Roudier <roudierp@landcareresearch.co.nz>
Diff between clhs versions 0.7-3 dated 2020-04-15 and 0.8.1 dated 2021-05-10
clhs-0.7-3/clhs/NEWS |only clhs-0.8.1/clhs/DESCRIPTION | 27 - clhs-0.8.1/clhs/MD5 | 51 +- clhs-0.8.1/clhs/NAMESPACE | 5 clhs-0.8.1/clhs/NEWS.md |only clhs-0.8.1/clhs/R/clhs-data.frame.R | 20 - clhs-0.8.1/clhs/R/clhs-internal.R | 79 +++- clhs-0.8.1/clhs/R/clhs-package.R | 16 clhs-0.8.1/clhs/R/clhs-raster.R | 3 clhs-0.8.1/clhs/R/clhs-sf.R |only clhs-0.8.1/clhs/R/clhs-sp.R | 18 clhs-0.8.1/clhs/R/clhs.R | 25 - clhs-0.8.1/clhs/R/plot.R | 2 clhs-0.8.1/clhs/R/similarity.R | 14 clhs-0.8.1/clhs/README.md | 2 clhs-0.8.1/clhs/build/vignette.rds |binary clhs-0.8.1/clhs/inst/doc/intro-clhs.html | 329 ++++-------------- clhs-0.8.1/clhs/man/cLHS_result.Rd | 2 clhs-0.8.1/clhs/man/clhs-package.Rd | 15 clhs-0.8.1/clhs/man/clhs.Rd | 59 +-- clhs-0.8.1/clhs/man/plot.cLHS_result.Rd | 2 clhs-0.8.1/clhs/man/similarity_buffer.Rd | 17 clhs-0.8.1/clhs/tests/testthat/Rplots.pdf |only clhs-0.8.1/clhs/tests/testthat/test-clhs-data.frame.R | 3 clhs-0.8.1/clhs/tests/testthat/test-clhs-tibble.R | 8 clhs-0.8.1/clhs/tests/testthat/test-cost-constraint.R | 6 clhs-0.8.1/clhs/tests/testthat/test-method_DLHS.R | 2 clhs-0.8.1/clhs/tests/testthat/test-raster.R |only clhs-0.8.1/clhs/tests/testthat/test-sf.R |only clhs-0.8.1/clhs/tests/testthat/test-spdf.R |only 30 files changed, 323 insertions(+), 382 deletions(-)
Title: Base de Datos de Facil Acceso del Censo 2017 de Chile (2017
Chilean Census Easy Access Database)
Description: Provee un acceso conveniente a mas de 17 millones de registros
de la base de datos del Censo 2017. Los datos fueron importados desde
el DVD oficial del INE usando el Convertidor REDATAM creado por Pablo De
Grande. Esta paquete esta documentado intencionalmente en castellano
asciificado para que funcione sin problema en diferentes plataformas.
(Provides convenient access to more than 17 million records from the
Chilean Census 2017 database. The datasets were imported from the official
DVD provided by the Chilean National Bureau of Statistics by using the
REDATAM converter created by Pablo De Grande and in addition it includes the
maps accompanying these datasets.)
Author: Mauricio Vargas [aut, cre] (<https://orcid.org/0000-0003-1017-7574>),
Juan Correa [ctb],
Maria Paula Caldas [rev] (rOpenSci),
Frans van Dunee [rev] (rOpenSci),
Melina Vidoni [rev] (rOpenSci),
Constanza Manriquez [rev] (revision independiente de las vinietas),
Instituto Nacional de Estadisticas (INE) [dtc]
Maintainer: Mauricio Vargas <mvargas@dcc.uchile.cl>
Diff between censo2017 versions 0.4 dated 2021-02-06 and 0.5 dated 2021-05-10
DESCRIPTION | 32 ++ MD5 | 48 ++-- NEWS.md | 38 +-- R/censo2017-package.R |only R/connect.R | 331 +++++++++++++-------------- R/connection-pane.R | 172 +++++++------- R/download.R | 283 +++++++++++------------ R/remove.R | 33 +- R/schema.R | 431 ++++++++++++++++-------------------- R/utils.R | 75 +++--- R/zzz.R | 25 +- data/nivel_educacional_biobio.rda |binary inst/WORDLIST | 92 +++---- man/censo2017-package.Rd |only man/censo_bbdd.Rd | 60 ++--- man/censo_borrar_base.Rd | 32 +- man/censo_descargar_base.Rd | 48 +--- man/censo_desconectar_base.Rd | 28 +- man/censo_estado.Rd | 44 +-- man/censo_panel.Rd | 30 +- man/censo_tabla.Rd | 46 +-- man/nivel_educacional_biobio.Rd | 58 ++-- tests/testthat.R | 6 tests/testthat/test-01-download.R | 28 +- tests/testthat/test-02-tables.R | 64 ++--- tests/testthat/test-03-connection.R | 37 +-- 26 files changed, 1000 insertions(+), 1041 deletions(-)