Title: Sparse and Dense Multidimensional Array Storage Engine for Data
Science
Description: The data science storage engine 'TileDB' introduces a
powerful on-disk format for multi-dimensional arrays. It supports
dense and sparse arrays, dataframes and key-values stores, cloud
storage ('S3', 'GCS', 'Azure'), chunked arrays, multiple compression,
encryption and checksum filters, uses a fully multi-threaded
implementation, supports parallel I/O, data versioning ('time
travel'), metadata and groups. It is implemented as an embeddable
cross-platform C++ library with APIs from several languages, and
integrations.
Author: TileDB, Inc. [aut, cph],
Dirk Eddelbuettel [cre]
Maintainer: Dirk Eddelbuettel <dirk@tiledb.com>
Diff between tiledb versions 0.9.0 dated 2021-02-21 and 0.9.1 dated 2021-05-12
tiledb-0.9.0/tiledb/inst/NEWS.md |only tiledb-0.9.1/tiledb/DESCRIPTION | 20 tiledb-0.9.1/tiledb/MD5 | 56 +- tiledb-0.9.1/tiledb/NEWS.md |only tiledb-0.9.1/tiledb/R/ArraySchema.R | 11 tiledb-0.9.1/tiledb/R/DataFrame.R | 26 + tiledb-0.9.1/tiledb/R/TileDBArray.R | 210 +++++++--- tiledb-0.9.1/tiledb/R/zzz.R | 10 tiledb-0.9.1/tiledb/README.md | 8 tiledb-0.9.1/tiledb/build/vignette.rds |binary tiledb-0.9.1/tiledb/inst/LICENSE.txt | 2 tiledb-0.9.1/tiledb/inst/doc/documentation.html | 34 + tiledb-0.9.1/tiledb/inst/doc/introduction.html | 4 tiledb-0.9.1/tiledb/inst/doc/tiledb-mariadb-examples.Rmd |only tiledb-0.9.1/tiledb/inst/doc/tiledb-mariadb-examples.html |only tiledb-0.9.1/tiledb/inst/tinytest/test_arrowio.R | 3 tiledb-0.9.1/tiledb/inst/tinytest/test_dataframe.R | 41 + tiledb-0.9.1/tiledb/inst/tinytest/test_datetime.R | 6 tiledb-0.9.1/tiledb/inst/tinytest/test_dim.R | 81 ++- tiledb-0.9.1/tiledb/inst/tinytest/test_dimsubset.R |only tiledb-0.9.1/tiledb/inst/tinytest/test_query.R | 1 tiledb-0.9.1/tiledb/inst/tinytest/test_tiledbarray.R | 61 ++ tiledb-0.9.1/tiledb/man/selected_ranges-set-tiledb_array-method.Rd | 3 tiledb-0.9.1/tiledb/man/selected_ranges-tiledb_array-method.Rd | 3 tiledb-0.9.1/tiledb/man/sub-tiledb_array-ANY-method.Rd | 2 tiledb-0.9.1/tiledb/man/tiledb_array-class.Rd | 2 tiledb-0.9.1/tiledb/man/tiledb_array.Rd | 4 tiledb-0.9.1/tiledb/man/tiledb_array_schema.Rd | 3 tiledb-0.9.1/tiledb/src/libtiledb.cpp | 81 +++ tiledb-0.9.1/tiledb/tools/fetchTileDB.sh | 4 tiledb-0.9.1/tiledb/tools/tiledbVersion.txt | 4 tiledb-0.9.1/tiledb/vignettes/tiledb-mariadb-examples.Rmd |only 32 files changed, 507 insertions(+), 173 deletions(-)
Title: Semiparametric Spatial Filtering with Eigenvectors in
(Generalized) Linear Models
Description: Tools to decompose (transformed) spatial connectivity matrices and perform supervised or unsupervised semiparametric spatial filtering in a regression framework. The package supports unsupervised spatial filtering in standard linear as well as some generalized linear regression models.
Author: Sebastian Juhl [aut, cre] (<https://orcid.org/0000-0002-7123-5398>)
Maintainer: Sebastian Juhl <sebastian.juhl@gess.uni-mannheim.de>
Diff between spfilteR versions 1.0.0 dated 2020-12-07 and 1.1.0 dated 2021-05-12
DESCRIPTION | 6 MD5 | 31 - NAMESPACE | 2 NEWS.md | 25 + R/MI.decomp.R | 2 R/MI.local.R |only R/MI.resid.R | 3 R/MI.vec.R | 5 R/vp.R |only README.md | 1 inst/doc/spfilteR_vignette.Rmd | 2 inst/doc/spfilteR_vignette.html | 858 +++++++++++++++++++++++----------------- man/MI.decomp.Rd | 2 man/MI.resid.Rd | 3 man/MI.vec.Rd | 48 ++ man/vp.Rd |only tests/testthat/testing.R | 106 ++++ vignettes/spfilteR_vignette.Rmd | 2 18 files changed, 702 insertions(+), 394 deletions(-)
Title: R Interface to Google RE2 (C++) Regular Expression Library
Description: Pattern matching, extraction, replacement and other string
processing operations using Google's RE2 <https://github.com/google/re2>
regular-expression engine. Consistent interface (similar to 'stringr').
RE2 uses finite-automata based techniques, and offers a
fast and safe alternative to backtracking regular-expression engines
like those used in 'stringr', 'stringi' and other PCRE implementations.
Author: Girish Palya [aut, cre],
RE2 developers [ctb] (RE2 library),
Google Inc. [ctb, cph] (RE2 library)
Maintainer: Girish Palya <girishji@gmail.com>
Diff between re2 versions 0.1.0 dated 2021-05-03 and 0.1.1 dated 2021-05-12
DESCRIPTION | 6 +++--- MD5 | 24 ++++++++++++------------ inst/doc/re2_intro.Rmd | 6 +++++- inst/doc/re2_intro.html | 7 +++++-- src/Makevars | 2 +- src/re2_do_match.cpp | 1 - src/re2google/re2/dfa.cc | 14 ++++++++------ src/re2google/re2/onepass.cc | 16 +++++++++++++--- src/re2google/re2/walker-inl.h | 11 +++++++---- src/util/GNUmakefile | 2 +- tests/GNUmakefile | 4 ++-- tests/README | 13 ++++++------- vignettes/re2_intro.Rmd | 6 +++++- 13 files changed, 68 insertions(+), 44 deletions(-)
Title: Rare Variant Analysis and Genetic Simulations
Description: Rare variant association tests: burden tests (Bocher et al. 2019 <doi:10.1002/gepi.22210>) and the Sequence Kernel Association Test (Bocher et al. 2021 <doi:10.1038/s41431-020-00792-8>); and genetic simulations.
Author: Ozvan Bocher and Hervé Perdry
Maintainer: Ozvan Bocher <bocherozvan@gmail.com>
Diff between Ravages versions 0.1.4 dated 2021-05-08 and 0.1.5 dated 2021-05-12
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS | 2 +- inst/doc/Ravages_Simulations_vignette.html | 2 +- inst/doc/Ravages_vignette.html | 10 +++++----- man/Jaccard.Rd | 2 ++ 6 files changed, 18 insertions(+), 16 deletions(-)
Title: Generative Mechanism Estimation in Temporal Complex Networks
Description: Statistical methods for estimating preferential attachment and node fitness generative mechanisms in temporal complex networks are provided. Thong Pham et al. (2015) <doi:10.1371/journal.pone.0137796>. Thong Pham et al. (2016) <doi:10.1038/srep32558>. Thong Pham et al. (2020) <doi:10.18637/jss.v092.i03>.
Author: Thong Pham, Paul Sheridan, Hidetoshi Shimodaira
Maintainer: Thong Pham <thongphamthe@gmail.com>
Diff between PAFit versions 1.0.1.8 dated 2020-02-17 and 1.1 dated 2021-05-12
DESCRIPTION | 8 MD5 | 127 ++++++++------ NAMESPACE | 4 R/Jeong.R | 6 R/OnlyA_CV.R | 2 R/OnlyF_CV.R | 21 +- R/PAFit.R | 54 ++++-- R/PAFit_oneshot.R |only R/RcppExports.R | 4 R/binning.R |only R/estimate_multiple_phase_correct_mcPAMLE.R |only R/estimate_new_correct_mcPAMLE.R |only R/estimate_single_phase_correct_mcPAMLE.R |only R/from_igraph.R | 2 R/generate_net.R | 12 - R/joint_estimate.R | 7 R/one_cycle.R | 27 ++- R/performCV_core_new_new.R | 3 R/performCV_old_new.R | 3 R/plot.PAFit_net.R | 22 +- R/regress_alpha.R |only R/to_networkDynamic.R | 16 + build/partial.rdb |only build/vignette.rds |binary inst/NEWS.Rd | 7 man/ComplexNetCoauthor.rd | 6 man/Jeong.rd | 4 man/Newman.rd | 6 man/PAFit-package.Rd | 19 +- man/PAFit_oneshot.rd |only man/as.PAFit_net.rd | 2 man/from_igraph.rd | 2 man/from_networkDynamic.rd | 2 man/generate_BA.rd | 4 man/generate_BB.rd | 4 man/generate_ER.rd | 4 man/generate_fit_only.rd | 4 man/generate_net.Rd | 2 man/get_statistics.Rd | 2 man/graph_from_file.rd | 2 man/graph_to_file.rd | 2 man/joint_estimate.rd | 8 man/only_A_estimate.rd | 6 man/only_F_estimate.rd | 10 - man/plot.Full_PAFit_result.Rd | 2 man/plot.PAFit_net.Rd | 2 man/plot.PAFit_result.rd | 2 man/plot.PA_result.rd | 2 man/print.CV_Result.rd | 2 man/print.CV_data.rd | 2 man/print.Full_PAFit_result.Rd | 2 man/print.PAFit_data.rd | 2 man/print.PAFit_net.rd | 2 man/print.PAFit_result.rd | 2 man/print.PA_result.rd | 2 man/summary.CV_Data.rd | 2 man/summary.CV_Result.rd | 2 man/summary.Full_PAFit_result.Rd | 2 man/summary.PAFit_data.rd | 2 man/summary.PAFit_net.rd | 2 man/summary.PAFit_result.rd | 2 man/summary.PA_result.rd | 2 man/test_linear_PA.rd | 4 man/to_igraph.rd | 2 man/to_networkDynamic.rd | 2 src/Cpp_code.cpp | 238 ++++++++++++++++++++++++++-- src/PAFit_header.h |only src/RcppExports.cpp | 25 ++ src/init.c | 3 69 files changed, 525 insertions(+), 199 deletions(-)
Title: Extract Drug Dosages from Free-Text Prescriptions
Description: Utilities for converting unstructured electronic prescribing instructions into structured medication data. Extracts drug dose, units, daily dosing frequency and intervals from English-language prescriptions. Based on Karystianis et al. (2015) <doi:10.1186/s12911-016-0255-x>.
Author: David Selby [aut, cre] (<https://orcid.org/0000-0001-8026-5663>),
Belay Birlie Yimer [ctb],
Ben Marwick [ctb]
Maintainer: David Selby <david.selby@manchester.ac.uk>
Diff between doseminer versions 0.1.0 dated 2021-05-12 and 0.1.1 dated 2021-05-12
DESCRIPTION | 8 ++-- MD5 | 24 ++++++------ NEWS.md | 5 ++ R/extract.R | 5 +- inst/doc/case_study.Rmd | 6 --- inst/doc/case_study.html | 7 --- man/doseminer-package.Rd | 42 +++++++++++----------- man/drug_units.Rd | 44 +++++++++++------------ man/extract_from_prescription.Rd | 74 +++++++++++++++++++-------------------- man/hourly_to_daily.Rd | 34 ++++++++--------- man/multiply_dose.Rd | 42 +++++++++++----------- man/weekly_to_daily.Rd | 34 ++++++++--------- vignettes/case_study.Rmd | 6 --- 13 files changed, 159 insertions(+), 172 deletions(-)
Title: Distance Covariance and Correlation for Time Series Analysis
Description: Computing and plotting the distance covariance and correlation function of a univariate or a multivariate time series. Both versions of biased and unbiased estimators of distance covariance and correlation are provided. Test statistics for testing pairwise independence are also implemented. Some data sets are also included. References include:
a) Edelmann Dominic, Fokianos Konstantinos and Pitsillou Maria (2019). An Updated Literature Review of Distance Correlation and Its Applications to Time Series. International Statistical Review, 87(2): 237--262. <doi:10.1111/insr.12294>.
b) Fokianos Konstantinos and Pitsillou Maria (2018). Testing independence for multivariate time series via the auto-distance correlation matrix. Biometrika, 105(2): 337--352. <doi:10.1093/biomet/asx082>.
c) Fokianos Konstantinos and Pitsillou Maria (2017). Consistent testing for pairwise dependence in time series. Technometrics, 59(2): 262--270. <doi:10.1080/00401706.2016.1156024>.
d) Pitsillou Maria and Fokianos Konstantinos (2016). dCovTS: Distance Covariance/Correlation for Time Series. R Journal, 8(2):324-340. <doi:10.32614/RJ-2016-049>.
Author: Michail Tsagris [aut, cre],
Maria Pitsillou [aut, cph],
Konstantinos Fokianos [aut]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between dCovTS versions 1.1 dated 2016-09-21 and 1.2 dated 2021-05-12
DESCRIPTION | 36 +++---- MD5 | 76 +++++++-------- NAMESPACE | 21 ++-- R/ADCF.R | 96 ++++++++++++++----- R/ADCFplot.R | 179 ++++++++++++++++++++++++----------- R/ADCV.R | 92 +++++++++++++----- R/ATilde.R | 30 ++++-- R/OrdinaryBoot.R | 219 ++++++++++++++++++++++++++++++++----------- R/OrdinaryBoot1.R | 128 ++++++++++++++++++------- R/OrdinaryBoot2.R | 122 +++++++++++++++++------- R/OrdinaryBootCV.R | 137 ++++++++++++++++++--------- R/RbootCV.R | 149 ++++++++++++++++++++--------- R/SubsCV.R | 167 ++++++++++++++++++++++++--------- R/TstarBoot.R | 216 ++++++++++++++++++++++++++++++++----------- R/TstarBoot1.R | 172 +++++++++++++++++++++++++--------- R/TstarBoot2.R | 185 +++++++++++++++++++++++++++---------- R/UnivTest.R | 232 ++++++++++++++++++++++++++++++++-------------- R/crossDist.R | 48 +++++++-- R/kernelFun.R | 105 +++++++++++++++------ R/mADCF.R | 165 +++++++++++++++++++++++++-------- R/mADCFplot.R | 249 ++++++++++++++++++++++++++++++++++---------------- R/mADCFtest.R | 135 +++++++++++++++++++-------- R/mADCV.R | 154 +++++++++++++++++++++++------- R/mADCVtest.R | 134 +++++++++++++++++++------- R/mOrdinaryBootCV.R | 169 +++++++++++++++++++++++---------- R/mRbootCV.R | 197 ++++++++++++++++++++++++++++----------- man/ADCF.Rd | 97 ++++++++++--------- man/ADCFplot.Rd | 111 ++++++++++++---------- man/ADCV.Rd | 91 ++++++++++-------- man/MortTempPart.Rd | 30 +++--- man/UnivTest.Rd | 131 ++++++++++++-------------- man/dCovTS-package.Rd | 97 +++++++++---------- man/ibmSp500.Rd | 39 ++++--- man/kernelFun.Rd | 44 +++++--- man/mADCF.Rd | 76 ++++++++------- man/mADCFplot.Rd | 88 +++++++++-------- man/mADCFtest.Rd | 119 ++++++++++++----------- man/mADCV.Rd | 77 +++++++++------ man/mADCVtest.Rd | 134 ++++++++++++++------------ 39 files changed, 3190 insertions(+), 1557 deletions(-)
More information about BifactorIndicesCalculator at CRAN
Permanent link
Title: Download and Merge Single-Cell RNA-Seq Data from the PanglaoDB
Database
Description: Download and merge labeled single-cell RNA-seq data from the PanglaoDB <https://panglaodb.se/> into a Seurat object.
Author: Daniel Osorio [aut, cre] (<https://orcid.org/0000-0003-4424-8422>),
Marieke Kuijjer [aut] (<https://orcid.org/0000-0001-6280-3130>),
James J. Cai [aut] (<https://orcid.org/0000-0002-8081-6725>)
Maintainer: Daniel Osorio <daniecos@uio.no>
Diff between rPanglaoDB versions 0.2.0 dated 2021-04-23 and 0.2.1 dated 2021-05-12
rPanglaoDB-0.2.0/rPanglaoDB/inst |only rPanglaoDB-0.2.1/rPanglaoDB/DESCRIPTION | 6 +++--- rPanglaoDB-0.2.1/rPanglaoDB/MD5 | 8 ++------ rPanglaoDB-0.2.1/rPanglaoDB/R/getSamples.R | 5 +++-- 4 files changed, 8 insertions(+), 11 deletions(-)
Title: Fishes of British Columbia
Description: Provides raw and curated data on the codes,
classification and conservation status of freshwater fishes in British
Columbia. Marine fishes will be added in a future release.
Author: Evan Amies-Galonski [aut, cre]
(<https://orcid.org/0000-0003-1096-2089>),
Joe Thorley [aut] (<https://orcid.org/0000-0002-7683-4592>),
Nadine Hussein [aut] (<https://orcid.org/0000-0003-4470-8361>),
Bronwen Lewis [ctb],
Jesse Patterson [ctb],
Gordon Oliphant [ctb],
Seb Dalgarno [ctb],
Simon Norris [ctb],
Allan Irvine [ctb],
Poisson Consulting [cph, fnd],
Province of British Columbia [cph]
Maintainer: Evan Amies-Galonski <evan@poissonconsulting.ca>
Diff between fishbc versions 0.2.0 dated 2021-02-18 and 0.2.1 dated 2021-05-12
DESCRIPTION | 6 +++--- MD5 | 9 +++++---- NEWS.md | 4 ++++ inst |only tests/testthat/test-freshwaterfish.R | 4 ++-- tests/testthat/test-whse_fish_species_cd.R | 4 ++-- 6 files changed, 16 insertions(+), 11 deletions(-)
Title: Methods of Linear Ordering of Data
Description: Provides various methods of linear ordering of data. Supports weights and positive/negative impacts.
Currently included methods:
* Sum of ranks
* Standardized sums
* Hellwig's (Hellwig, 1968, <https://unesdoc.unesco.org/ark:/48223/pf0000158559.locale=en>)
* TOPSIS (Yoon & Hwang, 1981, ISBN:978-3-642-48318-9).
Author: Antoni Baum [aut, cre]
Maintainer: Antoni Baum <antoni.baum@protonmail.com>
Diff between linearOrdering versions 1.0.0 dated 2019-10-11 and 1.0.1 dated 2021-05-12
DESCRIPTION | 7 +++---- MD5 | 8 ++++---- NEWS.md | 5 ++++- R/linear_ordering_methods.R | 8 ++++---- README.md | 6 +++++- 5 files changed, 20 insertions(+), 14 deletions(-)
More information about linearOrdering at CRAN
Permanent link
Title: Extended Joint Models for Longitudinal and Time-to-Event Data
Description: Fit joint models for longitudinal and time-to-event data under the Bayesian approach. Multiple longitudinal outcomes of mixed type (continuous/categorical) and multiple event times (competing risks and multi-state processes) are accommodated. Rizopoulos (2012, ISBN:9781439872864).
Author: Dimitris Rizopoulos [aut, cre]
(<https://orcid.org/0000-0001-9397-0900>),
Grigorios Papageorgiou [aut],
Pedro Miranda Afonso [aut]
Maintainer: Dimitris Rizopoulos <d.rizopoulos@erasmusmc.nl>
Diff between JMbayes2 versions 0.1-5 dated 2021-03-08 and 0.1-6 dated 2021-05-12
DESCRIPTION | 8 - MD5 | 36 ++-- NAMESPACE | 23 ++- NEWS.md | 10 + R/RcppExports.R | 8 + R/accuracy_measures.R |only R/basic_methods.R | 263 ++++++++++++++++++++++++++++++++++- R/help_functions.R | 368 ++++++++++---------------------------------------- R/jm.R | 77 +++++++--- R/jm_fit.R | 21 ++ R/predict_funs.R |only man/JMbayes2.Rd | 4 man/accuracy.Rd |only man/jm.Rd | 6 man/methods.Rd | 3 man/predict.Rd |only src/JMbayes2_Funs.h | 10 + src/JMbayes2_RE.h | 9 - src/RcppExports.cpp | 25 +++ src/init.c | 10 - src/mcmc_fit.cpp | 334 ++++++++++++++++++++++++++++++++++++++++++++- 21 files changed, 848 insertions(+), 367 deletions(-)
Title: Estimating Controlled Direct Effects for Explaining Causal
Findings
Description: A set of functions to estimate the controlled direct effect of treatment fixing a potential mediator to a specific value. Implements the sequential g-estimation estimator described in Vansteelandt (2009) <doi:10.1097/EDE.0b013e3181b6f4c9> and Acharya, Blackwell, and Sen (2016) <doi:10.1017/S0003055416000216>.
Author: Matthew Blackwell [aut, cre],
Avidit Acharya [aut],
Maya Sen [aut],
Shiro Kuriwaki [aut],
Jacob Brown [aut]
Maintainer: Matthew Blackwell <mblackwell@gov.harvard.edu>
Diff between DirectEffects versions 0.2 dated 2019-01-04 and 0.2.1 dated 2021-05-12
DESCRIPTION | 14 - MD5 | 27 +-- R/data.R | 4 build/partial.rdb |only build/vignette.rds |binary data/civilwar.RData |binary data/ploughs.RData |binary inst/doc/DirectEffects.R | 28 +-- inst/doc/DirectEffects.html | 368 +++++++++++++------------------------------- man/cdesens.Rd | 12 + man/civilwar.Rd | 6 man/plot.cdesens.Rd | 17 +- man/ploughs.Rd | 6 man/sequential_g.Rd | 25 ++ vignettes/DirectEffects.bib | 4 15 files changed, 204 insertions(+), 307 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-12-11 1.0.2
2015-12-10 1.0.1
2015-12-08 1.0
Title: Integrated Text Mining Solution
Description: An integrated solution to perform
a series of text mining tasks such as importing and cleaning a corpus, and
analyses like terms and documents counts, lexical summary, terms
co-occurrences and documents similarity measures, graphs of terms,
correspondence analysis and hierarchical clustering. Corpora can be imported
from spreadsheet-like files, directories of raw text files,
as well as from 'Dow Jones Factiva', 'LexisNexis', 'Europresse' and 'Alceste' files.
Author: Milan Bouchet-Valat [aut, cre],
Gilles Bastin [aut],
Antoine Chollet [aut]
Maintainer: Milan Bouchet-Valat <nalimilan@club.fr>
Diff between R.temis versions 0.1.2 dated 2019-06-17 and 0.1.3 dated 2021-05-12
DESCRIPTION | 9 ++++----- MD5 | 22 +++++++++++----------- NEWS | 3 +++ R/dictionary.R | 3 ++- man/build_dtm.Rd | 13 ++++++++++--- man/characteristic_docs.Rd | 3 +-- man/cooc_terms.Rd | 17 ++++++++++++----- man/frequent_terms.Rd | 6 +++--- man/lexical_summary.Rd | 3 +-- man/specific_terms.Rd | 18 ++++++++++++------ man/term_freq.Rd | 6 +++--- man/terms_graph.Rd | 10 ++++++++-- 12 files changed, 70 insertions(+), 43 deletions(-)
Title: Custom 'Bootstrap' 'Sass' Themes for 'shiny' and 'rmarkdown'
Description: Simplifies custom 'CSS' styling of both 'shiny' and 'rmarkdown' via 'Bootstrap' 'Sass'. Supports both 'Bootstrap' 3 and 4 as well as their various 'Bootswatch' themes. An interactive widget is also provided for previewing themes in real time.
Author: Carson Sievert [aut, cre] (<https://orcid.org/0000-0002-4958-2844>),
Joe Cheng [aut],
RStudio [cph],
Bootstrap contributors [ctb] (Bootstrap library),
Twitter, Inc [cph] (Bootstrap library),
Javi Aguilar [ctb, cph] (Bootstrap colorpicker library),
Thomas Park [ctb, cph] (Bootswatch library),
PayPal [ctb, cph] (Bootstrap accessibility plugin)
Maintainer: Carson Sievert <carson@rstudio.com>
Diff between bslib versions 0.2.4 dated 2021-01-25 and 0.2.5 dated 2021-05-12
bslib-0.2.4/bslib/R/fonts.R |only bslib-0.2.4/bslib/R/web-font.R |only bslib-0.2.4/bslib/inst/yarn.lock |only bslib-0.2.4/bslib/tests/testthat/test-assets |only bslib-0.2.4/bslib/tools/patches/006-bootswatch-solar.patch |only bslib-0.2.5/bslib/DESCRIPTION | 22 bslib-0.2.5/bslib/MD5 | 284 +++++----- bslib-0.2.5/bslib/NAMESPACE | 7 bslib-0.2.5/bslib/NEWS.md | 22 bslib-0.2.5/bslib/R/bs-current-theme.R | 7 bslib-0.2.5/bslib/R/bs-dependencies.R | 32 - bslib-0.2.5/bslib/R/bs-global.R | 9 bslib-0.2.5/bslib/R/bs-theme-layers.R | 47 + bslib-0.2.5/bslib/R/bs-theme-preview.R | 151 ++++- bslib-0.2.5/bslib/R/bs-theme-update.R | 94 +-- bslib-0.2.5/bslib/R/bs-theme.R | 71 +- bslib-0.2.5/bslib/R/deprecated.R | 7 bslib-0.2.5/bslib/R/imports.R | 64 ++ bslib-0.2.5/bslib/R/onLoad.R | 6 bslib-0.2.5/bslib/R/sysdata.rda |binary bslib-0.2.5/bslib/R/utils.R | 4 bslib-0.2.5/bslib/R/versions.R | 2 bslib-0.2.5/bslib/README.md | 239 +++----- bslib-0.2.5/bslib/inst/bs3compat/_navbar_compat.scss | 46 + bslib-0.2.5/bslib/inst/bs3compat/_shiny_input.scss | 1 bslib-0.2.5/bslib/inst/css-precompiled/3/bootstrap.min.css | 2 bslib-0.2.5/bslib/inst/css-precompiled/4/bootstrap.min.css | 2 bslib-0.2.5/bslib/inst/fonts/KFOlCnqEu92Fr1MmEU9fBBc-.woff |binary bslib-0.2.5/bslib/inst/fonts/KFOlCnqEu92Fr1MmEU9vAA.woff |binary bslib-0.2.5/bslib/inst/fonts/KFOlCnqEu92Fr1MmSU5fBBc-.woff |binary bslib-0.2.5/bslib/inst/fonts/KFOlCnqEu92Fr1MmSU5vAA.woff |binary bslib-0.2.5/bslib/inst/fonts/KFOlCnqEu92Fr1MmWUlfBBc-.woff |binary bslib-0.2.5/bslib/inst/fonts/KFOlCnqEu92Fr1MmWUlvAA.woff |binary bslib-0.2.5/bslib/inst/fonts/KFOmCnqEu92Fr1Me5g.woff |binary bslib-0.2.5/bslib/inst/fonts/KFOmCnqEu92Fr1Mu4mxM.woff |binary bslib-0.2.5/bslib/inst/lib/bs-a11y-p/plugins/js/bootstrap-accessibility.js | 2 bslib-0.2.5/bslib/inst/lib/bs-a11y-p/plugins/js/bootstrap-accessibility.min.js | 2 bslib-0.2.5/bslib/inst/lib/bs-a11y-p/src/sass/partials/_close.scss | 2 bslib-0.2.5/bslib/inst/lib/bs-a11y-p/src/sass/partials/_links.scss | 2 bslib-0.2.5/bslib/inst/lib/bs-sass/assets/stylesheets/bootstrap/_variables.scss | 4 bslib-0.2.5/bslib/inst/lib/bs/LICENSE | 4 bslib-0.2.5/bslib/inst/lib/bs/README.md | 26 bslib-0.2.5/bslib/inst/lib/bs/dist/js/bootstrap.bundle.min.js | 6 bslib-0.2.5/bslib/inst/lib/bs/dist/js/bootstrap.bundle.min.js.map | 2 bslib-0.2.5/bslib/inst/lib/bs/package.json | 74 +- bslib-0.2.5/bslib/inst/lib/bs/scss/_breadcrumb.scss | 5 bslib-0.2.5/bslib/inst/lib/bs/scss/_carousel.scss | 2 bslib-0.2.5/bslib/inst/lib/bs/scss/_code.scss | 1 bslib-0.2.5/bslib/inst/lib/bs/scss/_custom-forms.scss | 6 bslib-0.2.5/bslib/inst/lib/bs/scss/_dropdown.scss | 2 bslib-0.2.5/bslib/inst/lib/bs/scss/_input-group.scss | 24 bslib-0.2.5/bslib/inst/lib/bs/scss/_nav.scss | 5 bslib-0.2.5/bslib/inst/lib/bs/scss/_navbar.scss | 14 bslib-0.2.5/bslib/inst/lib/bs/scss/_pagination.scss | 4 bslib-0.2.5/bslib/inst/lib/bs/scss/_progress.scss | 2 bslib-0.2.5/bslib/inst/lib/bs/scss/_reboot.scss | 23 bslib-0.2.5/bslib/inst/lib/bs/scss/_root.scss | 1 bslib-0.2.5/bslib/inst/lib/bs/scss/_spinners.scss | 17 bslib-0.2.5/bslib/inst/lib/bs/scss/_type.scss | 2 bslib-0.2.5/bslib/inst/lib/bs/scss/_variables.scss | 91 ++- bslib-0.2.5/bslib/inst/lib/bs/scss/bootstrap-grid.scss | 7 bslib-0.2.5/bslib/inst/lib/bs/scss/bootstrap-reboot.scss | 6 bslib-0.2.5/bslib/inst/lib/bs/scss/bootstrap.scss | 6 bslib-0.2.5/bslib/inst/lib/bs/scss/mixins/_buttons.scss | 1 bslib-0.2.5/bslib/inst/lib/bs/scss/mixins/_forms.scss | 9 bslib-0.2.5/bslib/inst/lib/bs/scss/mixins/_image.scss | 2 bslib-0.2.5/bslib/inst/lib/bsw/README.md | 29 - 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Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-06-13 0.2.1
2019-05-31 0.2.0
2019-03-25 0.1.1
Title: Drug Ontology Parsing Engine
Description: Provides information on drug names (brand,
generic and street) for drugs tracked by the DEA. There are functions that
will search synonyms and return the drug names and types. The vignettes
have extensive information on the work done to create the data for the package.
Author: Raymond Balise [aut, cre] (<https://orcid.org/0000-0002-9856-5901>),
Layla Bouzoubaa [aut] (<https://orcid.org/0000-0002-6616-0950>),
Gabriel Odom [aut] (<https://orcid.org/0000-0003-1341-4555>),
Nathaniel Castor [aut]
Maintainer: Raymond Balise <balise@miami.edu>
Diff between DOPE versions 1.0.4 dated 2021-01-11 and 2.0.1 dated 2021-05-12
DOPE-1.0.4/DOPE/inst/processNoSlang.R |only DOPE-1.0.4/DOPE/inst/studyStructure.R |only DOPE-2.0.1/DOPE/DESCRIPTION | 21 + DOPE-2.0.1/DOPE/MD5 | 117 +++++---- DOPE-2.0.1/DOPE/NAMESPACE | 5 DOPE-2.0.1/DOPE/NEWS.md | 31 ++ DOPE-2.0.1/DOPE/R/compress_lookup.R | 36 -- DOPE-2.0.1/DOPE/R/dea_brands.R | 4 DOPE-2.0.1/DOPE/R/dea_factsheets.R | 4 DOPE-2.0.1/DOPE/R/dea_street_names.R | 2 DOPE-2.0.1/DOPE/R/drug_df.R |only DOPE-2.0.1/DOPE/R/drug_stop_words.R |only DOPE-2.0.1/DOPE/R/iqvia.R |only DOPE-2.0.1/DOPE/R/lookup.R | 71 +++-- DOPE-2.0.1/DOPE/R/lookup_df.R | 6 DOPE-2.0.1/DOPE/R/lookup_syn.R |only DOPE-2.0.1/DOPE/R/parse.R |only DOPE-2.0.1/DOPE/README.md | 22 + DOPE-2.0.1/DOPE/build/vignette.rds |binary DOPE-2.0.1/DOPE/data/dea_brands.rda |binary DOPE-2.0.1/DOPE/data/dea_factsheets.rda |binary DOPE-2.0.1/DOPE/data/dea_street_names.rda |binary DOPE-2.0.1/DOPE/data/drug_df.rda |only DOPE-2.0.1/DOPE/data/drug_stop_words.rda |only DOPE-2.0.1/DOPE/data/iqvia.rda |only DOPE-2.0.1/DOPE/data/lookup_df.rda |binary DOPE-2.0.1/DOPE/data/noslang_raw.rda |binary DOPE-2.0.1/DOPE/inst/doc/Intro.R | 34 +- DOPE-2.0.1/DOPE/inst/doc/Intro.Rmd | 66 ++--- DOPE-2.0.1/DOPE/inst/doc/Intro.html | 69 ++--- DOPE-2.0.1/DOPE/inst/doc/controlled.html | 73 ----- DOPE-2.0.1/DOPE/inst/doc/dea_scrape.R | 10 DOPE-2.0.1/DOPE/inst/doc/dea_scrape.Rmd | 50 ++-- DOPE-2.0.1/DOPE/inst/doc/dea_scrape.html | 115 ++------- DOPE-2.0.1/DOPE/inst/doc/dea_street_names.R | 4 DOPE-2.0.1/DOPE/inst/doc/dea_street_names.Rmd | 18 - DOPE-2.0.1/DOPE/inst/doc/dea_street_names.html | 87 +----- DOPE-2.0.1/DOPE/inst/doc/make_lookup_df.R | 104 ++++++-- DOPE-2.0.1/DOPE/inst/doc/make_lookup_df.Rmd | 129 +++++++--- DOPE-2.0.1/DOPE/inst/doc/make_lookup_df.html | 225 ++++++++++-------- DOPE-2.0.1/DOPE/inst/doc/noslang_street_names.Rmd | 2 DOPE-2.0.1/DOPE/inst/doc/noslang_street_names.html | 75 ------ DOPE-2.0.1/DOPE/inst/doc/parse_lookup.R |only DOPE-2.0.1/DOPE/inst/doc/parse_lookup.Rmd |only DOPE-2.0.1/DOPE/inst/doc/parse_lookup.html |only DOPE-2.0.1/DOPE/inst/extdata/IQVIA |only DOPE-2.0.1/DOPE/inst/extdata/ontology.Rmd | 48 +-- DOPE-2.0.1/DOPE/inst/extdata/test_parse |only DOPE-2.0.1/DOPE/inst/scripts |only DOPE-2.0.1/DOPE/man/compress_lookup.Rd | 21 - DOPE-2.0.1/DOPE/man/dea_brands.Rd | 4 DOPE-2.0.1/DOPE/man/dea_factsheets.Rd | 4 DOPE-2.0.1/DOPE/man/dea_street_names.Rd | 2 DOPE-2.0.1/DOPE/man/drug_df.Rd |only DOPE-2.0.1/DOPE/man/drug_stop_words.Rd |only DOPE-2.0.1/DOPE/man/figures |only DOPE-2.0.1/DOPE/man/iqvia.Rd |only DOPE-2.0.1/DOPE/man/lookup.Rd | 24 + DOPE-2.0.1/DOPE/man/lookup_df.Rd | 6 DOPE-2.0.1/DOPE/man/lookup_syn.Rd |only DOPE-2.0.1/DOPE/man/parse.Rd |only DOPE-2.0.1/DOPE/tests/testthat/test-compress_lookup.R | 44 --- DOPE-2.0.1/DOPE/tests/testthat/test-lookup.R | 46 ++- DOPE-2.0.1/DOPE/tests/testthat/test-lookup_syn.R |only DOPE-2.0.1/DOPE/tests/testthat/test-parse.R |only DOPE-2.0.1/DOPE/vignettes/Intro.Rmd | 66 ++--- DOPE-2.0.1/DOPE/vignettes/dea_scrape.Rmd | 50 ++-- DOPE-2.0.1/DOPE/vignettes/dea_street_names.Rmd | 18 - DOPE-2.0.1/DOPE/vignettes/make_lookup_df.Rmd | 129 +++++++--- DOPE-2.0.1/DOPE/vignettes/noslang_street_names.Rmd | 2 DOPE-2.0.1/DOPE/vignettes/parse_lookup.Rmd |only 71 files changed, 962 insertions(+), 882 deletions(-)
Title: Biodiversity Assessment Tools
Description: Includes algorithms to assess alpha and beta diversity
in all their dimensions (taxonomic, phylogenetic and functional).
It allows performing a number of analyses based on species
identities/abundances, phylogenetic/functional distances, trees,
convex-hulls or kernel density n-dimensional hypervolumes
depicting species relationships.
Cardoso et al. (2015) <doi:10.1111/2041-210X.12310>.
Author: Pedro Cardoso [aut, cre],
Stefano Mammola [aut],
Francois Rigal [aut],
Jose Carvalho [aut]
Maintainer: Pedro Cardoso <pedro.cardoso@helsinki.fi>
Diff between BAT versions 2.5.1 dated 2021-04-27 and 2.6.0 dated 2021-05-12
BAT-2.5.1/BAT/man/hill.alpha.Rd |only BAT-2.5.1/BAT/man/rao.alpha.Rd |only BAT-2.6.0/BAT/DESCRIPTION | 12 BAT-2.6.0/BAT/MD5 | 90 BAT-2.6.0/BAT/NAMESPACE | 12 BAT-2.6.0/BAT/R/BAT.R | 1990 +++++++++++++--------- BAT-2.6.0/BAT/man/alpha.Rd | 5 BAT-2.6.0/BAT/man/alpha.accum.Rd | 2 BAT-2.6.0/BAT/man/alpha.estimate.Rd | 2 BAT-2.6.0/BAT/man/beta.Rd | 2 BAT-2.6.0/BAT/man/beta.accum.Rd | 2 BAT-2.6.0/BAT/man/beta.evenness.Rd | 2 BAT-2.6.0/BAT/man/beta.multi.Rd | 2 BAT-2.6.0/BAT/man/contribution.Rd | 2 BAT-2.6.0/BAT/man/coverage.Rd | 2 BAT-2.6.0/BAT/man/dispersion.Rd | 2 BAT-2.6.0/BAT/man/dummy.Rd | 15 BAT-2.6.0/BAT/man/evenness.Rd | 2 BAT-2.6.0/BAT/man/evenness.contribution.Rd | 2 BAT-2.6.0/BAT/man/fill.Rd |only BAT-2.6.0/BAT/man/gdm.Rd | 2 BAT-2.6.0/BAT/man/gower.Rd |only BAT-2.6.0/BAT/man/hill.Rd |only BAT-2.6.0/BAT/man/hull.alpha.Rd | 44 BAT-2.6.0/BAT/man/hull.beta.Rd | 29 BAT-2.6.0/BAT/man/hull.build.Rd |only BAT-2.6.0/BAT/man/hull.contribution.Rd | 30 BAT-2.6.0/BAT/man/kernel.alpha.Rd | 62 BAT-2.6.0/BAT/man/kernel.beta.Rd | 66 BAT-2.6.0/BAT/man/kernel.beta.evenness.Rd | 35 BAT-2.6.0/BAT/man/kernel.build.Rd |only BAT-2.6.0/BAT/man/kernel.contribution.Rd | 55 BAT-2.6.0/BAT/man/kernel.dispersion.Rd | 51 BAT-2.6.0/BAT/man/kernel.evenness.Rd | 44 BAT-2.6.0/BAT/man/kernel.evenness.contribution.Rd | 50 BAT-2.6.0/BAT/man/kernel.originality.Rd | 56 BAT-2.6.0/BAT/man/kernel.similarity.Rd | 52 BAT-2.6.0/BAT/man/optim.alpha.Rd | 2 BAT-2.6.0/BAT/man/optim.alpha.stats.Rd | 2 BAT-2.6.0/BAT/man/optim.beta.Rd | 2 BAT-2.6.0/BAT/man/optim.beta.stats.Rd | 2 BAT-2.6.0/BAT/man/originality.Rd | 4 BAT-2.6.0/BAT/man/rao.Rd |only BAT-2.6.0/BAT/man/raster.alpha.Rd | 2 BAT-2.6.0/BAT/man/raster.beta.Rd | 2 BAT-2.6.0/BAT/man/raster.dispersion.Rd | 2 BAT-2.6.0/BAT/man/raster.evenness.Rd | 2 BAT-2.6.0/BAT/man/sar.Rd | 2 BAT-2.6.0/BAT/man/standard.Rd |only BAT-2.6.0/BAT/man/tree.build.Rd |only BAT-2.6.0/BAT/man/uniqueness.Rd | 2 51 files changed, 1513 insertions(+), 1233 deletions(-)
Title: Animated Graph Layout Viewer
Description: Provides 'Java' graphical user interfaces
for viewing, manipulating and plotting graphs.
Graphs may be directed or undirected.
Author: Alun Thomas
Maintainer: Alun Thomas <Alun.Thomas@utah.edu>
Diff between rviewgraph versions 1.4.0 dated 2021-03-20 and 1.4.1 dated 2021-05-12
DESCRIPTION | 13 - MD5 | 31 ++- R/rViewGraph.R | 2 R/rviewgraph-package.R | 10 + R/vg.R | 307 +++++++++++++++++++-------------------- build |only inst/doc |only inst/java/rviewgraph.jar |binary java/RViewGraphBuild.java | 1 java/rviewgraph/RGraphFrame.java | 11 + java/rviewgraph/Rvg.java |only man/rViewGraph.Rd | 2 man/rviewgraph-package.Rd | 12 + man/vg.Rd | 143 ++++++++---------- vignettes |only 15 files changed, 286 insertions(+), 246 deletions(-)
Title: FDR Power
Description: This is a package for calculating two differing notions of power, or deriving sample
sizes for specified requisite power in multiple testing experiments under a variety of methods for
control of the distribution of the False Discovery Proportion (FDP). More specifically, one can
choose to control the FDP distribution according to control of its (i) mean, e.g. the usual BH-FDR
procedure, or via the probability that it exceeds a given value, delta, via (ii) the Romano
procedure, or via (iii) my procedure based upon asymptotic approximation. Likewise, we can think of
the power in multiple testing experiments in terms of a summary of the distribution of the
True Positive Proportion (TPP). The package will compute power, sample size or any other missing
parameter required for power based upon (i) the mean of the TPP which is the average power
(ii) the probability that the TPP exceeds a given value, lambda, via my asymptotic approximation
procedure. The theoretical results are described in Izmirlian, G. (2020) Stat. and Prob. letters,
<doi:10.1016/j.spl.2020.108713>, and an applied paper describing the methodology with a
simulation study is in preparation.
Author: Grant Izmirlian Jr <izmirlig@mail.nih.gov>
Maintainer: Grant Izmirlian Jr <izmirlig@mail.nih.gov>
Diff between pwrFDR versions 2.8.7 dated 2021-01-14 and 2.8.9 dated 2021-05-12
DESCRIPTION | 6 ++--- MD5 | 8 ++++--- NAMESPACE | 2 - R/pwrFDR.R | 48 ++++++++++++++++++++++++++++-------------- inst |only man/Ch29-view-presentation.Rd |only 6 files changed, 42 insertions(+), 22 deletions(-)
Title: Multivariate Normal Variance Mixtures
Description: Functions for working with (grouped) multivariate normal variance mixture
distributions (evaluation of distribution functions and densities,
random number generation and parameter estimation), including
Student's t distribution for non-integer degrees-of-freedom as well as the grouped t
distribution and copula with multiple degrees-of-freedom parameters.
Author: Marius Hofert [aut, cre],
Erik Hintz [aut],
Christiane Lemieux [aut]
Maintainer: Marius Hofert <marius.hofert@uwaterloo.ca>
Diff between nvmix versions 0.0-5 dated 2020-09-21 and 0.0-6 dated 2021-05-12
DESCRIPTION | 13 - MD5 | 61 ++-- NAMESPACE | 13 - R/Student.R | 297 ++++++++++++------------ R/auxiliaries.R | 32 ++ R/fitnvmix.R | 416 +++++++++++++++++----------------- R/graphics.R | 282 ++++++++++++++++++++--- R/riskmeasures.R | 56 ++-- build/vignette.rds |binary data/numerical_experiments_data.RData |binary inst/doc/nvmix_functionality.html | 27 +- inst/doc/nvmix_riskmeasures.html | 23 + man/copula.Rd | 6 man/dependencemeasures.Rd | 6 man/dgnvmix.Rd | 6 man/dnvmix.Rd | 4 man/fitnvmix.Rd | 5 man/gammamix.Rd | 4 man/get_set_param.Rd | 6 man/get_set_qqplot_param.Rd |only man/numerical_experiments_data.Rd | 4 man/pgnvmix.Rd | 8 man/pnvmix.Rd | 4 man/qnvmix.rd | 4 man/qqplot_maha.Rd | 143 +++++++++-- man/rgnvmix.Rd | 11 man/riskmeasures.Rd | 4 man/rnvmix.Rd | 13 - src/eval_densmix_integrand.c | 6 src/eval_gdensmix_integrand.c | 6 src/eval_nvmix_integral.c | 12 src/precond.c | 3 32 files changed, 955 insertions(+), 520 deletions(-)
Title: Estimation and Hypothesis Testing for Threshold Regression
Description: Threshold regression models are also called two-phase regression, broken-stick regression, split-point regression, structural change models, and regression kink models, with and without interaction terms. Methods for both continuous and discontinuous threshold models are included, but the support for the former is much greater. This package is described in Fong, Huang, Gilbert and Permar (2017) <DOI:10.1186/s12859-017-1863-x> and the package vignette.
Author: Youyi Fong [cre],
Qianqian Chen [aut],
Shuangcheng Hua [aut],
Hyunju Son [aut],
Adam Elder [aut],
Tao Yang [aut],
Zonglin He [aut],
Simone Giannerini [aut]
Maintainer: Youyi Fong <youyifong@gmail.com>
Diff between chngpt versions 2020.10-12 dated 2020-10-14 and 2021.5-12 dated 2021-05-12
ChangeLog | 39 +++ DESCRIPTION | 13 - MD5 | 41 +-- NAMESPACE | 9 R/chngpt.test.R | 1 R/chngptm.R | 296 ++++++++++++++++---------- R/double.hinge.R | 14 - README.md |only inst/doc/chngpt-vignette.pdf |binary inst/unitTests/runit.chngptm.linear.R | 70 ++++-- inst/unitTests/runit.chngptm.logistic.R | 15 + inst/unitTests/runit.double.hinge.R | 2 man/chngpt.test.Rd | 4 man/chngptm.Rd | 43 +++ man/coef.0.ls.Rd | 174 --------------- man/convert.coef.Rd | 17 - man/double.hinge.Rd | 10 man/hinge.test.Rd | 2 src/Makevars.win | 1 src/fastgrid2.cc | 23 +- src/fastgrid_helper.cc | 362 ++++++++++++++++++++++++-------- src/fastgrid_helper.h | 21 + 22 files changed, 698 insertions(+), 459 deletions(-)
Title: Radiocarbon Dating, Age-Depth Modelling, Relative Sea Level Rate
Estimation, and Non-Parametric Phase Modelling
Description: Enables quick calibration of radiocarbon dates under various
calibration curves (including user generated ones); age-depth modelling
as per the algorithm of Haslett and Parnell (2008) <DOI:10.1111/j.1467-9876.2008.00623.x>; Relative sea level
rate estimation incorporating time uncertainty in polynomial regression
models (Parnell and Gehrels 2015) <DOI:10.1002/9781118452547.ch32>; non-parametric phase modelling via
Gaussian mixtures as a means to determine the activity of a site
(and as an alternative to the Oxcal function SUM; currently
unpublished), and reverse calibration of dates from calibrated into
un-calibrated years (also unpublished).
Author: Andrew Parnell [cre, aut],
Nathan McJames [ctb],
Bruna Wundervald [ctb],
Keefe Murphy [ctb],
Mateus Maia [ctb],
Amin Shoari Nejad [ctb],
Yong Chen Goh [ctb]
Maintainer: Andrew Parnell <Andrew.Parnell@mu.ie>
Diff between Bchron versions 4.7.4 dated 2021-01-28 and 4.7.5 dated 2021-05-12
DESCRIPTION | 32 + MD5 | 75 +-- NAMESPACE | 3 NEWS.md | 12 R/BchronCalibrate.R | 53 +- R/BchronCheck.R |only R/Bchronology.R | 196 ++++++-- R/data.R | 12 R/dateInfluence.BchronologyRun.R | 20 R/hdr.R | 8 R/plot.BchronCalibratedDates.R | 15 R/plot.BchronologyRun.R | 3 R/unCalibrate.R | 13 build/vignette.rds |binary inst/doc/Bchron.R | 4 inst/doc/Bchron.Rmd | 6 inst/doc/Bchron.html | 721 +++++++++++-------------------- man/BchronCalibrate.Rd | 8 man/BchronCheck.Rd |only man/Bchronology.Rd | 33 + man/dateInfluence.Rd | 2 man/intcal13.Rd | 2 man/intcal20.Rd | 2 man/marine13.Rd | 2 man/marine20.Rd | 2 man/plot.BchronCalibratedDates.Rd | 4 man/plot.BchronologyRun.Rd | 2 man/shcal13.Rd | 2 man/shcal20.Rd | 2 src/Bchron.c | 3 tests/testthat.R | 1 tests/testthat/test_BchronCalibrate.R | 48 +- tests/testthat/test_BchronDensity.R | 58 +- tests/testthat/test_Bchronology.R | 60 +- tests/testthat/test_RSL.R | 55 +- tests/testthat/test_all_chrons.R | 459 +++++++++++++++++-- tests/testthat/test_calibration_curves.R |only tests/testthat/test_influence.R | 62 +- tests/testthat/test_misc_functions.R | 14 vignettes/Bchron.Rmd | 6 40 files changed, 1218 insertions(+), 782 deletions(-)
Title: Growth Charts via Smooth Regression Quantiles with Automatic
Smoothness Estimation and Additive Terms
Description: Fits non-crossing regression quantiles as a function of linear covariates and multiple smooth terms via B-splines with L1-norm difference penalties. The smoothing parameters are estimated as part of the model fitting. Monotonicity and concavity constraints on the fitted curves are allowed. See Muggeo, Sciandra, Tomasello and Calvo (2013) <doi:10.1007/s10651-012-0232-1> and <doi:10.13140/RG.2.2.12924.85122> for some code examples.
Smoothing parameter selection with additive terms is discussed in Muggeo and others (2020) <doi:10.1177/1471082X20929802>.
Author: Vito M. R. Muggeo [aut, cre] (<https://orcid.org/0000-0002-3386-4054>)
Maintainer: Vito M. R. Muggeo <vito.muggeo@unipa.it>
Diff between quantregGrowth versions 1.2-0 dated 2021-05-05 and 1.2-1 dated 2021-05-12
DESCRIPTION | 8 MD5 | 30 - NEWS | 13 R/AIC.gcrq.R | 1 R/gcrq.r | 42 +- R/gcrq.rq.cv.R | 4 R/ncross.rq.fitX.R | 18 - R/ncross.rq.fitXB.r | 36 +- R/plot.gcrq.R | 726 +++++++++++++++++++----------------------- R/print.gcrq.R | 3 R/summary.gcrq.R | 31 + R/vcov.gcrq.r | 24 + man/gcrq.Rd | 26 - man/ps.Rd | 2 man/quantregGrowth-package.Rd | 4 man/summary.gcrq.Rd | 2 16 files changed, 496 insertions(+), 474 deletions(-)
More information about quantregGrowth at CRAN
Permanent link
Title: Similarity and Distance Quantification Between Probability
Functions
Description: Computes 46 optimized distance and similarity measures for comparing probability functions (Drost (2018) <doi:10.21105/joss.00765>). These comparisons between probability functions have their foundations in a broad range of scientific disciplines from mathematics to ecology. The aim of this package is to provide a core framework for clustering, classification, statistical inference, goodness-of-fit, non-parametric statistics, information theory, and machine learning tasks that are based on comparing univariate or multivariate probability functions.
Author: Hajk-Georg Drost [aut, cre] (<https://orcid.org/0000-0002-1567-306X>)
Maintainer: Hajk-Georg Drost <hajk-georg.drost@tuebingen.mpg.de>
Diff between philentropy versions 0.4.0 dated 2020-01-09 and 0.5.0 dated 2021-05-12
DESCRIPTION | 18 MD5 | 30 NEWS.md | 15 R/distance.R | 1382 ++++++++++++++++++++++----------------- README.md | 62 + build/vignette.rds |binary inst/CITATION | 2 inst/doc/Distances.Rmd | 2 inst/doc/Distances.html | 163 ++-- inst/doc/Information_Theory.html | 229 +++--- inst/doc/Introduction.Rmd | 4 inst/doc/Introduction.html | 38 - man/distance.Rd | 27 src/distances.h | 24 vignettes/Distances.Rmd | 2 vignettes/Introduction.Rmd | 4 16 files changed, 1179 insertions(+), 823 deletions(-)
Title: Estimate Gaussian Mixture Vector Autoregressive Model
Description: Unconstrained and constrained maximum likelihood estimation of structural and reduced form
Gaussian mixture vector autoregressive (GMVAR) model, quantile residual tests, graphical diagnostics,
simulations, forecasting, and estimation of generalized impulse response function and generalized
forecast error variance decomposition.
Leena Kalliovirta, Mika Meitz, Pentti Saikkonen (2016) <doi:10.1016/j.jeconom.2016.02.012>,
Savi Virolainen (2020) <arXiv:2007.04713>.
Author: Savi Virolainen [aut, cre]
Maintainer: Savi Virolainen <savi.virolainen@helsinki.fi>
Diff between gmvarkit versions 1.4.1 dated 2021-01-27 and 1.4.2 dated 2021-05-12
gmvarkit-1.4.1/gmvarkit/R/GIRF.R |only gmvarkit-1.4.1/gmvarkit/tests/testthat/Rplots.pdf |only gmvarkit-1.4.1/gmvarkit/tests/testthat/test_GIRF.R |only gmvarkit-1.4.2/gmvarkit/DESCRIPTION | 9 gmvarkit-1.4.2/gmvarkit/MD5 | 73 ++++--- gmvarkit-1.4.2/gmvarkit/NAMESPACE | 3 gmvarkit-1.4.2/gmvarkit/NEWS.md | 19 +- gmvarkit-1.4.2/gmvarkit/R/GIRFandGFEVD.R |only gmvarkit-1.4.2/gmvarkit/R/GMVARconstruction.R | 28 ++- gmvarkit-1.4.2/gmvarkit/R/MAINest.R | 86 ++------- gmvarkit-1.4.2/gmvarkit/R/argumentChecks.R | 36 +++ gmvarkit-1.4.2/gmvarkit/R/data.R | 101 ++++++++--- gmvarkit-1.4.2/gmvarkit/R/diagnosticPlot.R | 6 gmvarkit-1.4.2/gmvarkit/R/generateParams.R | 10 - gmvarkit-1.4.2/gmvarkit/R/geneticAlgorithm.R | 15 - gmvarkit-1.4.2/gmvarkit/R/plotMethods.R | 73 +++++++ gmvarkit-1.4.2/gmvarkit/R/predictMethod.R | 2 gmvarkit-1.4.2/gmvarkit/R/printMethods.R | 60 +++++- gmvarkit-1.4.2/gmvarkit/R/quantileResiduals.R | 1 gmvarkit-1.4.2/gmvarkit/R/simulateGMVAR.R | 4 gmvarkit-1.4.2/gmvarkit/README.md | 24 ++ gmvarkit-1.4.2/gmvarkit/data/usamone.rda |only gmvarkit-1.4.2/gmvarkit/data/usamone_prec.rda |only gmvarkit-1.4.2/gmvarkit/inst/doc/intro-to-gmvarkit.Rmd | 25 ++ gmvarkit-1.4.2/gmvarkit/inst/doc/intro-to-gmvarkit.html | 27 ++ gmvarkit-1.4.2/gmvarkit/man/GAfit.Rd | 7 gmvarkit-1.4.2/gmvarkit/man/GFEVD.Rd |only gmvarkit-1.4.2/gmvarkit/man/GIRF.Rd | 28 +-- gmvarkit-1.4.2/gmvarkit/man/eurusd.Rd | 2 gmvarkit-1.4.2/gmvarkit/man/fitGMVAR.Rd | 55 ----- gmvarkit-1.4.2/gmvarkit/man/gmvar_to_sgmvar.Rd | 4 gmvarkit-1.4.2/gmvarkit/man/in_paramspace_int.Rd | 88 ++++++--- gmvarkit-1.4.2/gmvarkit/man/predict.gmvar.Rd | 2 gmvarkit-1.4.2/gmvarkit/man/profile_logliks.Rd | 4 gmvarkit-1.4.2/gmvarkit/man/random_ind.Rd | 7 gmvarkit-1.4.2/gmvarkit/man/simulateGMVAR.Rd | 2 gmvarkit-1.4.2/gmvarkit/man/smart_ind.Rd | 7 gmvarkit-1.4.2/gmvarkit/man/usamone.Rd |only gmvarkit-1.4.2/gmvarkit/man/usamone_prec.Rd |only gmvarkit-1.4.2/gmvarkit/man/warn_eigens.Rd |only gmvarkit-1.4.2/gmvarkit/tests/testthat/test_GIRFandGFEVD.R |only gmvarkit-1.4.2/gmvarkit/tests/testthat/test_argumentChecks.R | 26 ++ gmvarkit-1.4.2/gmvarkit/vignettes/intro-to-gmvarkit.Rmd | 25 ++ 43 files changed, 584 insertions(+), 275 deletions(-)
Title: Managing and Visualizing Brain Surface Data
Description: Provides high-level access to neuroimaging data from standard software packages like 'FreeSurfer' <http://freesurfer.net/> on the level of subjects and groups. Load morphometry data, surfaces and brain parcellations based on atlases. Mask data using labels, load data for specific atlas regions only, and visualize data and statistical results directly in 'R'.
Author: Tim Schäfer [aut, cre] (<https://orcid.org/0000-0002-3683-8070>)
Maintainer: Tim Schäfer <ts+code@rcmd.org>
Diff between fsbrain versions 0.4.2 dated 2021-03-28 and 0.4.3 dated 2021-05-12
fsbrain-0.4.2/fsbrain/tests/testthat.R |only fsbrain-0.4.2/fsbrain/tests/testthat/test-vis_group.R |only fsbrain-0.4.2/fsbrain/tests/testthat/test-vis_meshes.R |only fsbrain-0.4.2/fsbrain/tests/testthat/test-vis_multiview.R |only fsbrain-0.4.2/fsbrain/tests/testthat/test-vis_surface_background.R |only fsbrain-0.4.2/fsbrain/tests/testthat/test-vis_volume.R |only fsbrain-0.4.2/fsbrain/tests/testthat/test-vis_volume_3d.R |only fsbrain-0.4.3/fsbrain/DESCRIPTION | 8 fsbrain-0.4.3/fsbrain/MD5 | 124 + fsbrain-0.4.3/fsbrain/NAMESPACE | 2 fsbrain-0.4.3/fsbrain/R/brainview_magick.R | 122 + fsbrain-0.4.3/fsbrain/R/cbar.R | 8 fsbrain-0.4.3/fsbrain/R/cbar_magick.R | 42 fsbrain-0.4.3/fsbrain/R/fsdir_abstraction_subject.R | 2 fsbrain-0.4.3/fsbrain/R/helpers_magick.R |only fsbrain-0.4.3/fsbrain/R/rglactions.R | 33 fsbrain-0.4.3/fsbrain/R/vis.R | 83 + fsbrain-0.4.3/fsbrain/R/vis_group.R | 10 fsbrain-0.4.3/fsbrain/R/vis_multiview.R | 14 fsbrain-0.4.3/fsbrain/inst/doc/fsbrain.html | 639 +++++----- fsbrain-0.4.3/fsbrain/inst/doc/fsbrain_faq.R | 11 fsbrain-0.4.3/fsbrain/inst/doc/fsbrain_faq.Rmd | 48 fsbrain-0.4.3/fsbrain/inst/doc/fsbrain_faq.html | 319 ++-- fsbrain-0.4.3/fsbrain/inst/doc/fsbrain_vol.html | 157 +- fsbrain-0.4.3/fsbrain/man/arrange.brainview.images.Rd | 7 fsbrain-0.4.3/fsbrain/man/arrange.brainview.images.grid.Rd | 2 fsbrain-0.4.3/fsbrain/man/brainviews.Rd | 5 fsbrain-0.4.3/fsbrain/man/combine.colorbar.with.brainview.animation.Rd | 7 fsbrain-0.4.3/fsbrain/man/combine.colorbar.with.brainview.image.Rd | 8 fsbrain-0.4.3/fsbrain/man/combine.colorbar.with.brainview.image.vertical.Rd | 8 fsbrain-0.4.3/fsbrain/man/highlight.vertices.on.subject.Rd |only fsbrain-0.4.3/fsbrain/man/image.remap.color.Rd |only fsbrain-0.4.3/fsbrain/man/images.dimmax.Rd |only fsbrain-0.4.3/fsbrain/man/images.same.height.Rd |only fsbrain-0.4.3/fsbrain/man/images.same.width.Rd |only fsbrain-0.4.3/fsbrain/man/rglactions.Rd | 4 fsbrain-0.4.3/fsbrain/man/subject.num.verts.Rd | 2 fsbrain-0.4.3/fsbrain/man/vis.color.on.subject.Rd | 4 fsbrain-0.4.3/fsbrain/man/vis.data.on.fsaverage.Rd | 1 fsbrain-0.4.3/fsbrain/man/vis.data.on.subject.Rd | 1 fsbrain-0.4.3/fsbrain/man/vis.export.from.coloredmeshes.Rd | 14 fsbrain-0.4.3/fsbrain/man/vis.group.coloredmeshes.Rd | 5 fsbrain-0.4.3/fsbrain/man/vis.labeldata.on.subject.Rd | 1 fsbrain-0.4.3/fsbrain/man/vis.mask.on.subject.Rd | 1 fsbrain-0.4.3/fsbrain/man/vis.region.values.on.subject.Rd | 1 fsbrain-0.4.3/fsbrain/man/vis.subject.annot.Rd | 1 fsbrain-0.4.3/fsbrain/man/vis.subject.label.Rd | 1 fsbrain-0.4.3/fsbrain/man/vis.subject.morph.native.Rd | 1 fsbrain-0.4.3/fsbrain/man/vis.subject.morph.standard.Rd | 1 fsbrain-0.4.3/fsbrain/man/vis.symmetric.data.on.subject.Rd | 1 fsbrain-0.4.3/fsbrain/man/vislayout.from.coloredmeshes.Rd | 9 fsbrain-0.4.3/fsbrain/man/wrapped.image.append.Rd |only fsbrain-0.4.3/fsbrain/tests/testthat/helper-functions.R | 3 fsbrain-0.4.3/fsbrain/tests/testthat/teardown-cran.R | 3 fsbrain-0.4.3/fsbrain/tests/testthat/test-atlas.R | 6 fsbrain-0.4.3/fsbrain/tests/testthat/test-coloredmesh.R | 5 fsbrain-0.4.3/fsbrain/tests/testthat/test-curvature.R | 1 fsbrain-0.4.3/fsbrain/tests/testthat/test-fsdir_abstraction_group.R | 10 fsbrain-0.4.3/fsbrain/tests/testthat/test-fsdir_abstraction_subject.R | 12 fsbrain-0.4.3/fsbrain/tests/testthat/test-helper_magick.R |only fsbrain-0.4.3/fsbrain/tests/testthat/test-morph_agg.R | 9 fsbrain-0.4.3/fsbrain/tests/testthat/test-morph_atlas_agg.R | 12 fsbrain-0.4.3/fsbrain/tests/testthat/test-morph_concat.R | 4 fsbrain-0.4.3/fsbrain/tests/testthat/test-r_vis_volume.R |only fsbrain-0.4.3/fsbrain/tests/testthat/test-seg_stats.R | 1 fsbrain-0.4.3/fsbrain/tests/testthat/test-u_vis_volume_3d.R |only fsbrain-0.4.3/fsbrain/tests/testthat/test-vis.R | 4 fsbrain-0.4.3/fsbrain/tests/testthat/test-volume.R | 1 fsbrain-0.4.3/fsbrain/tests/testthat/test-w_vis_group.R |only fsbrain-0.4.3/fsbrain/tests/testthat/test-x_vis_meshes.R |only fsbrain-0.4.3/fsbrain/tests/testthat/test-y_vis_multiview.R |only fsbrain-0.4.3/fsbrain/tests/testthat/test-z_vis_surface_background.R |only fsbrain-0.4.3/fsbrain/tests/testthat_au.R |only fsbrain-0.4.3/fsbrain/vignettes/fsbrain_faq.Rmd | 48 74 files changed, 1179 insertions(+), 647 deletions(-)
Title: Downloading Time Series from ALFRED Database for Various
Vintages
Description: Provides direct access to the ALFRED (<https://alfred.stlouisfed.org>) and FRED (<https://fred.stlouisfed.org>) databases.
Its functions return tidy data frames for different releases of the specified time series.
Note that this product uses the FRED© API but is not endorsed or certified by the Federal Reserve Bank of St. Louis.
Author: Onno Kleen [aut, cre] (<https://orcid.org/0000-0003-4731-4640>)
Maintainer: Onno Kleen <r@onnokleen.de>
Diff between alfred versions 0.1.11 dated 2021-01-22 and 0.1.12 dated 2021-05-12
alfred-0.1.11/alfred/build |only alfred-0.1.11/alfred/inst |only alfred-0.1.11/alfred/vignettes |only alfred-0.1.12/alfred/DESCRIPTION | 10 +- alfred-0.1.12/alfred/MD5 | 17 +--- alfred-0.1.12/alfred/NAMESPACE | 3 alfred-0.1.12/alfred/NEWS.md | 2 alfred-0.1.12/alfred/R/get_alfred_series.R | 97 ++++++++++++++++---------- alfred-0.1.12/alfred/man/get_alfred_series.Rd | 20 ++++- alfred-0.1.12/alfred/man/get_fred_series.Rd | 16 +++- 10 files changed, 103 insertions(+), 62 deletions(-)
Title: Create Ternary Plots
Description: Plots ternary diagrams (simplex plots / Gibbs triangles) using the
standard graphics functions.
An alternative to 'ggtern', which uses the 'ggplot2' family of plotting
functions.
Includes a 'Shiny' user interface for point-and-click plotting.
Author: Martin R. Smith [aut, cre, cph]
(<https://orcid.org/0000-0001-5660-1727>),
Lilian Sanselme [ctb]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between Ternary versions 1.2.1 dated 2020-12-09 and 1.2.2 dated 2021-05-12
DESCRIPTION | 6 - MD5 | 41 +++++--- NAMESPACE | 3 NEWS.md | 8 + R/Contours.R | 21 +++- R/Coordinates.R | 35 ++++++- R/shiny.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/TernaryApp/app.R | 1 inst/WORDLIST | 1 inst/doc/Ternary.R | 38 ++++++++ inst/doc/Ternary.Rmd | 51 ++++++++++- inst/doc/Ternary.html | 174 ++++++++++++++++++++------------------ inst/doc/interpolation.R |only inst/doc/interpolation.Rmd |only inst/doc/interpolation.html |only man/ColourTernary.Rd | 7 + man/TernaryApp.Rd | 2 man/TernaryCoords.Rd | 38 ++++++-- tests/testthat/Rplots.pdf |only tests/testthat/test-Coordinates.R | 24 +++-- vignettes/Ternary.Rmd | 51 ++++++++++- vignettes/interpolation.Rmd |only 24 files changed, 367 insertions(+), 136 deletions(-)
Title: Data and Variable Transformation Functions
Description: Collection of miscellaneous utility functions, supporting data
transformation tasks like recoding, dichotomizing or grouping variables,
setting and replacing missing values. The data transformation functions
also support labelled data, and all integrate seamlessly into a
'tidyverse'-workflow.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>),
Iago Giné-Vázquez [ctb],
Alexander Bartel [ctb] (<https://orcid.org/0000-0002-1280-6138>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjmisc versions 2.8.6 dated 2021-01-07 and 2.8.7 dated 2021-05-12
DESCRIPTION | 8 MD5 | 229 ++++---- NAMESPACE | 75 -- NEWS.md | 12 R/S3-methods.R | 16 R/add_cases.R | 3 R/add_columns.R | 6 R/all_na.R | 2 R/big_mark.R | 1 R/count_na.R | 8 R/de_mean.R | 4 R/descr.R | 8 R/dicho.R | 12 R/find_var.R | 8 R/format.R |only R/frq.R | 24 R/group_str.R | 4 R/group_var.R | 9 R/has_na.R | 4 R/helpfunctions.R | 13 R/is_empty.R | 4 R/is_float.R | 10 R/is_num_fac.R | 2 R/merge_df.R | 9 R/merge_imputations.R | 14 R/move_column.R | 1 R/num_to_fac.R | 2 R/prop_table.R | 6 R/re-exports.R | 10 R/rec.R | 50 + R/recode_mids_fun.R | 4 R/recode_to.R | 6 R/ref_lvl.R | 9 R/remove_vars.R | 2 R/replace_na.R | 1 R/reshape_helpers.R | 1 R/reshape_longer.R | 2 R/rotate_df.R | 2 R/round_num.R | 2 R/row_count.R | 7 R/row_sums.R | 10 R/select_helpers.R | 1 R/seq_col.R | 4 R/set_na.R | 2 R/split_var.R | 7 R/spread_coef.R | 28 - R/std.R | 10 R/str_contains.R | 7 R/str_pos.R | 4 R/str_start_end.R | 5 R/tidy_values.R | 3 R/to_dummy.R | 4 R/to_long.R | 3 R/to_value.R | 2 R/typical.R | 7 R/var_labels.R | 4 R/var_type.R | 7 R/word_wrap.R | 2 R/zap_inf.R | 2 README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/design_philosophy.R | 3 inst/doc/design_philosophy.Rmd | 3 inst/doc/design_philosophy.html | 592 ++++++++--------------- inst/doc/exploringdatasets.R | 8 inst/doc/exploringdatasets.Rmd | 8 inst/doc/exploringdatasets.html | 484 ++++++------------ inst/doc/recodingvariables.R | 6 inst/doc/recodingvariables.Rmd | 12 inst/doc/recodingvariables.html | 1022 ++++++++++++++++------------------------ man/add_rows.Rd | 115 ++-- man/add_variables.Rd | 117 ++-- man/all_na.Rd | 56 +- man/big_mark.Rd | 101 +-- man/count_na.Rd | 114 ++-- man/de_mean.Rd | 131 ++--- man/descr.Rd | 1 man/dicho.Rd | 299 +++++------ man/find_var.Rd | 3 man/flat_table.Rd | 159 +++--- man/frq.Rd | 393 +++++++-------- man/group_str.Rd | 153 ++--- man/group_var.Rd | 347 ++++++------- man/has_na.Rd | 159 +++--- man/is_crossed.Rd | 172 +++--- man/is_empty.Rd | 133 ++--- man/move_columns.Rd | 148 ++--- man/numeric_to_factor.Rd | 69 +- man/rec.Rd | 457 +++++++++-------- man/recode_to.Rd | 210 ++++---- man/reexports.Rd | 6 man/ref_lvl.Rd | 159 +++--- man/remove_var.Rd | 65 +- man/replace_na.Rd | 212 ++++---- man/reshape_longer.Rd | 225 ++++---- man/rotate_df.Rd | 115 ++-- man/row_count.Rd | 136 ++--- man/row_sums.Rd | 214 ++++---- man/set_na_if.Rd | 117 ++-- man/split_var.Rd | 309 ++++++------ man/spread_coef.Rd | 215 ++++---- man/std.Rd | 298 +++++------ man/str_contains.Rd | 163 +++--- man/str_find.Rd | 173 +++--- man/str_start.Rd | 129 ++--- man/tidy_values.Rd | 79 +-- man/to_dummy.Rd | 118 ++-- man/to_value.Rd | 115 ++-- man/var_rename.Rd | 109 ++-- man/var_type.Rd | 89 +-- man/word_wrap.Rd | 65 +- man/zap_inf.Rd | 97 +-- vignettes/design_philosophy.Rmd | 3 vignettes/exploringdatasets.Rmd | 8 vignettes/recodingvariables.Rmd | 12 116 files changed, 4349 insertions(+), 5061 deletions(-)
Title: Research Project Directory Generator
Description: Create a project directory structure, along with typical files
for that project. This allows projects to be quickly and easily created,
as well as for them to be standardized. Designed specifically with scientists
in mind (mainly bio-medical researchers, but likely applies to other fields).
Author: Luke Johnston [aut, cre] (<https://orcid.org/0000-0003-4169-2616>)
Maintainer: Luke Johnston <lwjohnst@gmail.com>
Diff between prodigenr versions 0.5.0 dated 2019-07-01 and 0.6.0 dated 2021-05-12
prodigenr-0.5.0/prodigenr/R/includes.R |only prodigenr-0.5.0/prodigenr/R/template_list.R |only prodigenr-0.5.0/prodigenr/inst/rmarkdown/templates/abstract |only prodigenr-0.5.0/prodigenr/inst/rmarkdown/templates/manuscript |only prodigenr-0.5.0/prodigenr/inst/rmarkdown/templates/poster |only prodigenr-0.5.0/prodigenr/inst/templates/fetch_data.R |only prodigenr-0.5.0/prodigenr/inst/templates/setup.R |only prodigenr-0.6.0/prodigenr/DESCRIPTION | 20 prodigenr-0.6.0/prodigenr/MD5 | 76 +- prodigenr-0.6.0/prodigenr/NAMESPACE | 5 prodigenr-0.6.0/prodigenr/NEWS.md | 19 prodigenr-0.6.0/prodigenr/R/create_doc.R | 56 - prodigenr-0.6.0/prodigenr/R/prodigenr-package.R | 7 prodigenr-0.6.0/prodigenr/R/rstudio_setup.R | 4 prodigenr-0.6.0/prodigenr/R/setup_project.R | 115 ++- prodigenr-0.6.0/prodigenr/R/usethis-utils.R |only prodigenr-0.6.0/prodigenr/R/utils.R | 12 prodigenr-0.6.0/prodigenr/README.md | 61 - prodigenr-0.6.0/prodigenr/build/vignette.rds |binary prodigenr-0.6.0/prodigenr/inst/doc/prodigenr.R | 26 prodigenr-0.6.0/prodigenr/inst/doc/prodigenr.Rmd | 117 +-- prodigenr-0.6.0/prodigenr/inst/doc/prodigenr.html | 349 ++-------- prodigenr-0.6.0/prodigenr/inst/rmarkdown/templates/report |only prodigenr-0.6.0/prodigenr/inst/rmarkdown/templates/slides/skeleton/skeleton.Rmd | 36 - prodigenr-0.6.0/prodigenr/inst/rmarkdown/templates/slides/template.yaml | 4 prodigenr-0.6.0/prodigenr/inst/templates/R-README.md | 25 prodigenr-0.6.0/prodigenr/inst/templates/TODO.md | 2 prodigenr-0.6.0/prodigenr/inst/templates/base-README.md | 43 - prodigenr-0.6.0/prodigenr/inst/templates/basic-description |only prodigenr-0.6.0/prodigenr/inst/templates/data-README.md | 17 prodigenr-0.6.0/prodigenr/inst/templates/data-raw-README.md |only prodigenr-0.6.0/prodigenr/inst/templates/doc-README.md | 11 prodigenr-0.6.0/prodigenr/inst/templates/template-rproj |only prodigenr-0.6.0/prodigenr/man/create_doc.Rd | 33 prodigenr-0.6.0/prodigenr/man/figures/rstudio-projects.gif |binary prodigenr-0.6.0/prodigenr/man/prodigenr-package.Rd | 9 prodigenr-0.6.0/prodigenr/man/setup_project.Rd | 2 prodigenr-0.6.0/prodigenr/man/setup_with_git.Rd |only prodigenr-0.6.0/prodigenr/man/template_list.Rd | 6 prodigenr-0.6.0/prodigenr/tests/testthat/helper-setup.R | 2 prodigenr-0.6.0/prodigenr/tests/testthat/test-files.R | 24 prodigenr-0.6.0/prodigenr/tests/testthat/test-projects.R | 40 - prodigenr-0.6.0/prodigenr/vignettes/prodigenr.Rmd | 117 +-- 43 files changed, 534 insertions(+), 704 deletions(-)
Title: Create Pivot Tables
Description: Create regular pivot tables with just a few lines of R.
More complex pivot tables can also be created, e.g. pivot tables
with irregular layouts, multiple calculations and/or derived
calculations based on multiple data frames. Pivot tables are
constructed using R only and can be written to a range of
output formats (plain text, 'HTML', 'Latex' and 'Excel'),
including with styling/formatting.
Author: Christopher Bailiss [aut, cre]
Maintainer: Christopher Bailiss <cbailiss@gmail.com>
Diff between pivottabler versions 1.5.1 dated 2021-03-11 and 1.5.2 dated 2021-05-12
DESCRIPTION | 6 MD5 | 256 NAMESPACE | 58 NEWS.md | 746 - R/PivotBatch.R | 804 - R/PivotBatchCalculator.R | 758 - R/PivotBatchStatistics.R | 280 R/PivotCalculation.R | 664 - R/PivotCalculationGroup.R | 558 - R/PivotCalculationGroups.R | 354 R/PivotCalculator.R | 2288 ++-- R/PivotCell.R | 668 - R/PivotCells.R | 1808 +-- R/PivotData.R | 536 - R/PivotDataGroup.R | 5154 +++++----- R/PivotFilter.R | 604 - R/PivotFilterOverrides.R | 622 - R/PivotFilters.R | 1254 +- R/PivotHtmlRenderer.R | 980 - R/PivotLatexRenderer.R | 1270 +- R/PivotOpenXlsxRenderer.R | 972 - R/PivotOpenXlsxStyle.R | 1264 +- R/PivotOpenXlsxStyles.R | 934 - R/PivotStyle.R | 510 R/PivotStyles.R | 814 - R/PivotTable.R | 9252 +++++++++--------- R/basicTable.R | 184 R/checkArgument.R | 236 R/convertor.R | 540 - R/data.R | 278 R/pivotThemes.R | 922 - R/pivottabler.R | 116 R/quickPivot.R | 594 - R/styleParsing.R | 1614 +-- R/utilities.R | 550 - R/valueRangeExpression.R | 418 build/vignette.rds |binary inst/doc/v00-vignettes.R | 332 inst/doc/v00-vignettes.Rmd | 870 - inst/doc/v00-vignettes.html | 1000 - inst/htmlwidgets/lib/pivottabler-0.1.0/themes.css | 40 inst/htmlwidgets/pivottabler.js | 64 inst/htmlwidgets/pivottabler.yaml | 8 man/PivotBatch.Rd | 502 man/PivotBatchCalculator.Rd | 584 - man/PivotBatchStatistics.Rd | 324 man/PivotCalculation.Rd | 520 - man/PivotCalculationGroup.Rd | 618 - man/PivotCalculationGroups.Rd | 426 man/PivotCalculator.Rd | 1798 +-- man/PivotCell.Rd | 460 man/PivotCells.Rd | 1376 +- man/PivotData.Rd | 504 man/PivotDataGroup.Rd | 2570 ++--- man/PivotFilter.Rd | 470 man/PivotFilterOverrides.Rd | 548 - man/PivotFilters.Rd | 926 - man/PivotHtmlRenderer.Rd | 286 man/PivotLatexRenderer.Rd | 330 man/PivotOpenXlsxRenderer.Rd | 406 man/PivotOpenXlsxStyle.Rd | 832 - man/PivotOpenXlsxStyles.Rd | 468 man/PivotStyle.Rd | 482 man/PivotStyles.Rd | 646 - man/PivotTable.Rd | 6716 ++++++------- man/bhmtraindisruption.Rd | 78 man/bhmtrains.Rd | 88 man/checkArgument.Rd | 150 man/cleanOutlineArg.Rd | 62 man/convertPvtTblToBasicTbl.Rd | 62 man/exportValueAs.Rd | 58 man/getBlankTheme.Rd | 38 man/getCompactTheme.Rd | 38 man/getDefaultTheme.Rd | 38 man/getLargePlainTheme.Rd | 38 man/getPvtStyleDeclarations.Rd | 36 man/getSimpleColoredTheme.Rd | 116 man/getStandardTableTheme.Rd | 42 man/getTheme.Rd | 38 man/isNumericValue.Rd | 36 man/isTextValue.Rd | 36 man/oneToNULL.Rd | 40 man/pivottabler.Rd | 102 man/pvtperfresults.Rd | 60 man/pvtperfsummary.Rd | 74 man/qhpvt.Rd | 142 man/qlpvt.Rd | 76 man/qpvt.Rd | 134 man/renderBasicTable.Rd | 76 man/trainstations.Rd | 60 man/vreConvertSimpleNumericRange.Rd | 38 man/vreGetSingleValue.Rd | 40 man/vreHexToClr.Rd | 36 man/vreIsEqual.Rd | 40 man/vreIsMatch.Rd | 46 man/vreIsSimpleNumericRange.Rd | 40 man/vreIsSingleValue.Rd | 38 man/vreScale2Colours.Rd | 52 man/vreScaleNumber.Rd | 56 tests/testthat-1.R | 8 tests/testthat-2.R | 8 tests/testthat-3.R | 8 tests/testthat/test-A-01-basicTests.R | 176 tests/testthat/test-A-02-smokeTests.R | 758 - tests/testthat/test-A-03-illegalNameTests.R | 192 tests/testthat/test-A-04-quickPivotTests.R | 562 - tests/testthat/test-A-05-basicLayoutTests.R | 1252 +- tests/testthat/test-A-06-dataGroupTests.R | 1582 +-- tests/testthat/test-A-07-calculationTests.R | 1684 +-- tests/testthat/test-A-08-visualTotalTests.R | 188 tests/testthat/test-A-09-dataTypeTests.R | 1906 +-- tests/testthat/test-B-10-themingTests.R | 912 - tests/testthat/test-B-11-emptyGroupTests.R | 490 tests/testthat/test-B-12-exportTests.R | 852 - tests/testthat/test-B-13-latexTests.R | 1352 +- tests/testthat/test-B-14-exportOptionsTests.R | 430 tests/testthat/test-B-15-findGrouptests.R | 1092 +- tests/testthat/test-B-16-getCellsTests.R | 850 - tests/testthat/test-B-17-findCellstests.R | 682 - tests/testthat/test-B-18-irregularLayoutTests.R | 842 - tests/testthat/test-B-19-calculationFormatting.R | 492 tests/testthat/test-C-20-dataGroupFormatting.R | 590 - tests/testthat/test-C-21-alternativeLayouts.R | 392 tests/testthat/test-C-22-basicRowGroupHeaderLayouts.R | 540 - tests/testthat/test-C-23-outlineLayouts.R | 1710 +-- tests/testthat/test-C-24-exportTests2.R | 606 - tests/testthat/test-C-25-pivotRowColumns.R | 932 - tests/testthat/test-C-26-mapStyling.R | 1146 +- vignettes/v00-vignettes.Rmd | 870 - 129 files changed, 44095 insertions(+), 44085 deletions(-)
Title: Nonlinear Time Series Analysis
Description: Functions for nonlinear time series analysis. This package permits
the computation of the most-used nonlinear statistics/algorithms
including generalized correlation dimension, information dimension,
largest Lyapunov exponent, sample entropy and Recurrence
Quantification Analysis (RQA), among others. Basic routines
for surrogate data testing are also included. Part of this work
was based on the book "Nonlinear time series analysis" by
Holger Kantz and Thomas Schreiber (ISBN: 9780521529020).
Author: Constantino A. Garcia [aut, cre],
Gunther Sawitzki [ctb]
Maintainer: Constantino A. Garcia <constantino.garciama@ceu.es>
Diff between nonlinearTseries versions 0.2.10 dated 2020-06-13 and 0.2.11 dated 2021-05-12
DESCRIPTION | 15 - MD5 | 38 +-- NAMESPACE | 4 R/nonLinearSystems.R | 97 +++++--- R/nonlinearStatistics.R | 2 R/poincareMap.R | 7 build/vignette.rds |binary inst/doc/nonlinearTseries_quickstart.Rmd | 2 inst/doc/nonlinearTseries_quickstart.html | 358 +++++++----------------------- man/cliffordMap.Rd | 7 man/gaussMap.Rd | 7 man/henon.Rd | 7 man/ikedaMap.Rd | 7 man/logisticMap.Rd | 7 man/lorenz.Rd | 7 man/poincareMap.Rd | 7 man/rossler.Rd | 7 man/sinaiMap.Rd | 7 man/timeAsymmetry.Rd | 4 vignettes/nonlinearTseries_quickstart.Rmd | 2 20 files changed, 243 insertions(+), 349 deletions(-)
More information about nonlinearTseries at CRAN
Permanent link
Title: Utilities for Streamlined Data Import, Imputation and Modelling
Description: Provides functions streamlining the data analysis workflow:
Outsourcing data import, renaming and type casting to a *.csv.
Manipulating imputed datasets and fitting models on them. Summarizing models.
Author: J. Peter Marquardt [aut] (<https://orcid.org/0000-0002-5596-1357>),
Till D. Best [aut, cre] (<https://orcid.org/0000-0001-7323-827X>)
Maintainer: Till D. Best <till-best@gmx.de>
Diff between basecamb versions 1.0.1 dated 2021-04-20 and 1.0.4 dated 2021-05-12
DESCRIPTION | 8 ++--- MD5 | 16 ++++++---- NAMESPACE | 7 ++++ R/Tidy_names_types_factors.R | 27 ++++++++++++------ R/apply_function_to_imputed_data.R | 5 ++- R/scale_continuous_predictors.R |only man/apply_function_to_imputed_data.Rd | 4 ++ man/dot-scale_variable.Rd |only man/scale_continuous_predictors.Rd |only tests/testthat/test_assign_data_types_factors_dates.R | 25 ++++++++++++++-- tests/testthat/test_scale_continuous_predictors.R |only 11 files changed, 66 insertions(+), 26 deletions(-)
Title: Easily Extract Data from 'StatsWales'
Description: Download data from 'StatsWales' into R. Removes the need for the user to
write their own loops when parsing data from the 'StatsWales' API. Provides functions
for datasets (<http://open.statswales.gov.wales/en-gb/dataset>) and metadata
(<http://open.statswales.gov.wales/en-gb/discover/metadata>) endpoints.
Author: Jamie Ralph [aut, cre]
Maintainer: Jamie Ralph <jamesryanralph@outlook.com>
Diff between statswalesr versions 0.1.2 dated 2021-01-23 and 0.1.3 dated 2021-05-12
DESCRIPTION | 7 +++---- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/statswales_get_dataset.R | 40 +++++++++++++++++++++++++++++++++------- R/statswales_get_metadata.R | 20 ++++++++++++++++---- R/statswales_search.R | 21 ++++++++++++++++++--- 6 files changed, 79 insertions(+), 23 deletions(-)
More information about gamblers.ruin.gameplay at CRAN
Permanent link
Title: Dependent Mixture Models - Hidden Markov Models of GLMs and
Other Distributions in S4
Description: Fits latent (hidden) Markov models on mixed categorical and continuous (time series) data, otherwise known as dependent mixture models, see Visser & Speekenbrink (2010, <DOI:10.18637/jss.v036.i07>).
Author: Ingmar Visser <i.visser@uva.nl>, Maarten Speekenbrink <m.speekenbrink@ucl.ac.uk>
Maintainer: Ingmar Visser <i.visser@uva.nl>
Diff between depmixS4 versions 1.4-2 dated 2020-01-20 and 1.5-0 dated 2021-05-12
DESCRIPTION | 12 +- MD5 | 54 ++++++------ NEWS | 25 +++++ R/EM.R | 3 R/depmixfit-class.R | 11 -- R/posterior.R |only build/vignette.rds |binary inst/CITATION | 4 inst/doc/depmixS4.R | 46 +++++----- inst/doc/depmixS4.Rnw | 11 ++ inst/doc/depmixS4.pdf |binary man/depmix-class.Rd | 2 man/depmix-internal.Rd | 6 - man/depmix-methods.Rd | 2 man/depmix.Rd | 2 man/depmix.fit.Rd | 15 ++- man/depmix.sim-class.Rd | 2 man/em.control.Rd | 2 man/formatperc.Rd | 2 man/forwardbackward.Rd | 2 man/makeDepmix.Rd | 2 man/mix-class.Rd | 2 man/mix.Rd | 2 man/mix.sim-class.Rd | 2 man/posterior.Rd | 139 +++++++++++++++++++++++++++++---- man/simulate.Rd | 202 ++++++++++++++++++++++++------------------------ man/stationary.Rd | 4 man/viterbi.Rd |only vignettes/depmixS4.Rnw | 11 ++ 29 files changed, 362 insertions(+), 203 deletions(-)
Title: Select an Optimal Block-Length to Bootstrap Dependent Data
(Block Bootstrap)
Description: A set of functions to select the optimal block-length for a
dependent bootstrap (block-bootstrap). Includes the Hall, Horowitz, and Jing
(1995) <doi:10.1093/biomet/82.3.561> cross-validation method and the
Politis and White (2004) <doi:10.1081/ETC-120028836> Spectral Density
Plug-in method, including the Patton, Politis, and White (2009)
<doi:10.1080/07474930802459016> correction with a corresponding set of S3
plot methods.
Author: Alec Stashevsky [aut, cre],
Sergio Armella [ctb]
Maintainer: Alec Stashevsky <alec@alecstashevsky.com>
Diff between blocklength versions 0.1.3 dated 2021-02-25 and 0.1.4 dated 2021-05-12
DESCRIPTION | 23 ++++--- MD5 | 37 +++++++----- NEWS.md | 35 +++++++++++ R/hhj.R | 42 +++++++++++--- R/plot.hhj.R | 2 R/plot.pwsd.R | 32 +++++++++- R/pwsd.R | 124 ++++++++++++++++++++++++++---------------- README.md | 63 ++++++++++++--------- build/partial.rdb |binary build/vignette.rds |only inst |only man/figures/README-pwsd-1.svg | 118 +++++++++++++++++++-------------------- man/figures/logo.svg |only man/hhj.Rd | 8 +- man/plot.hhj.Rd | 2 man/plot.pwsd.Rd | 12 +++- man/pwsd.Rd | 14 +++- tests/testthat/test-hhj.R | 83 +++++++++++++++++++++++++++- tests/testthat/test-plots.R |only tests/testthat/test-pwsd.R |only vignettes |only 21 files changed, 413 insertions(+), 182 deletions(-)
Title: Construct Rich Tables for Output to 'HTML'/'Excel'
Description: Easily create tables from data
frames/matrices. Create/manipulate tables
row-by-row, column-by-column or cell-by-cell.
Use common formatting/styling to output
rich tables as 'HTML', 'HTML widgets' or to
'Excel'.
Author: Christopher Bailiss [aut, cre]
Maintainer: Christopher Bailiss <cbailiss@gmail.com>
Diff between basictabler versions 1.0.0 dated 2021-03-09 and 1.0.1 dated 2021-05-12
basictabler-1.0.0/basictabler/R/tableThemes.R |only basictabler-1.0.1/basictabler/DESCRIPTION | 6 basictabler-1.0.1/basictabler/MD5 | 184 basictabler-1.0.1/basictabler/NAMESPACE | 36 basictabler-1.0.1/basictabler/NEWS.md | 274 basictabler-1.0.1/basictabler/R/BasicTable.R | 4213 +++++----- basictabler-1.0.1/basictabler/R/TableCell.R | 584 - basictabler-1.0.1/basictabler/R/TableCellRanges.R | 666 - basictabler-1.0.1/basictabler/R/TableCells.R | 2010 ++-- basictabler-1.0.1/basictabler/R/TableHtmlRenderer.R | 282 basictabler-1.0.1/basictabler/R/TableOpenXlsxRenderer.R | 573 - basictabler-1.0.1/basictabler/R/TableOpenXlsxStyle.R | 1238 +- basictabler-1.0.1/basictabler/R/TableOpenXlsxStyles.R | 938 +- basictabler-1.0.1/basictabler/R/TableStyle.R | 500 - basictabler-1.0.1/basictabler/R/TableStyles.R | 678 - basictabler-1.0.1/basictabler/R/TableThemes.R |only basictabler-1.0.1/basictabler/R/basictabler.R | 96 basictabler-1.0.1/basictabler/R/checkArgument.R | 238 basictabler-1.0.1/basictabler/R/data.R | 98 basictabler-1.0.1/basictabler/R/quickTable.R | 350 basictabler-1.0.1/basictabler/R/sample.R | 78 basictabler-1.0.1/basictabler/R/styleParsing.R | 1614 +-- basictabler-1.0.1/basictabler/R/utilities.R | 150 basictabler-1.0.1/basictabler/R/valueRangeExpression.R | 418 basictabler-1.0.1/basictabler/README.md | 466 - basictabler-1.0.1/basictabler/build/vignette.rds |binary basictabler-1.0.1/basictabler/inst/doc/v01-introduction.R | 334 basictabler-1.0.1/basictabler/inst/doc/v01-introduction.Rmd | 612 - basictabler-1.0.1/basictabler/inst/doc/v01-introduction.html | 752 - basictabler-1.0.1/basictabler/inst/doc/v02-workingwithcells.R | 410 basictabler-1.0.1/basictabler/inst/doc/v02-workingwithcells.Rmd | 676 - basictabler-1.0.1/basictabler/inst/doc/v02-workingwithcells.html | 1004 +- basictabler-1.0.1/basictabler/inst/doc/v03-outputs.R | 218 basictabler-1.0.1/basictabler/inst/doc/v03-outputs.Rmd | 400 basictabler-1.0.1/basictabler/inst/doc/v03-outputs.html | 792 - basictabler-1.0.1/basictabler/inst/doc/v04-styling.R | 1228 +- basictabler-1.0.1/basictabler/inst/doc/v04-styling.Rmd | 1806 ++-- basictabler-1.0.1/basictabler/inst/doc/v04-styling.html | 2074 ++-- basictabler-1.0.1/basictabler/inst/doc/v05-findingandformatting.R | 830 - basictabler-1.0.1/basictabler/inst/doc/v05-findingandformatting.Rmd | 1202 +- basictabler-1.0.1/basictabler/inst/doc/v05-findingandformatting.html | 1506 +-- basictabler-1.0.1/basictabler/inst/doc/v06-shiny.R | 110 basictabler-1.0.1/basictabler/inst/doc/v06-shiny.Rmd | 208 basictabler-1.0.1/basictabler/inst/doc/v06-shiny.html | 522 - 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94 files changed, 26042 insertions(+), 26006 deletions(-)
Title: Statistical Inference of Vine Copulas
Description: Provides tools for the statistical analysis of vine copula models.
The package includes tools for parameter estimation, model selection,
simulation, goodness-of-fit tests, and visualization. Tools for estimation,
selection and exploratory data analysis of bivariate copula models are also
provided.
Author: Thomas Nagler [aut, cre],
Ulf Schepsmeier [aut],
Jakob Stoeber [aut],
Eike Christian Brechmann [aut],
Benedikt Graeler [aut],
Tobias Erhardt [aut],
Carlos Almeida [ctb],
Aleksey Min [ctb, ths],
Claudia Czado [ctb, ths],
Mathias Hofmann [ctb],
Matthias Killiches [ctb],
Harry Joe [ctb],
Thibault Vatter [ctb]
Maintainer: Thomas Nagler <mail@tnagler.com>
Diff between VineCopula versions 2.4.1 dated 2020-10-25 and 2.4.2 dated 2021-05-12
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NAMESPACE | 2 +- NEWS.md | 11 ++++++++++- R/BiCopCheck.R | 44 ++++++++++++++++++++++---------------------- R/BiCopEst.R | 16 ++++++++-------- R/RVineCopSelect.R | 1 - R/RVineSeqEst.R | 6 +++--- R/RVineStructureSelect.R | 1 - build/partial.rdb |binary 10 files changed, 56 insertions(+), 49 deletions(-)
Title: Estimate Univariate Gaussian or Student's t Mixture
Autoregressive Model
Description: Maximum likelihood estimation of univariate Gaussian Mixture Autoregressive (GMAR),
Student's t Mixture Autoregressive (StMAR), and Gaussian and Student's t Mixture Autoregressive (G-StMAR) models,
quantile residual tests, graphical diagnostics, forecast and simulate from GMAR, StMAR and G-StMAR processes.
Leena Kalliovirta, Mika Meitz, Pentti Saikkonen (2015) <doi:10.1111/jtsa.12108>,
Mika Meitz, Daniel Preve, Pentti Saikkonen (forthcoming) <doi:10.1080/03610926.2021.1916531>,
Savi Virolainen (2020) <arXiv:2003.05221>.
Author: Savi Virolainen [aut, cre]
Maintainer: Savi Virolainen <savi.virolainen@helsinki.fi>
Diff between uGMAR versions 3.3.0 dated 2021-02-12 and 3.3.1 dated 2021-05-12
uGMAR-3.3.0/uGMAR/inst/doc/intro-to-uGMAR.Rmd |only uGMAR-3.3.0/uGMAR/inst/doc/intro-to-uGMAR.html |only uGMAR-3.3.0/uGMAR/vignettes/intro-to-uGMAR.Rmd |only uGMAR-3.3.1/uGMAR/DESCRIPTION | 8 uGMAR-3.3.1/uGMAR/MD5 | 192 ++++++++--------- uGMAR-3.3.1/uGMAR/NEWS.md | 20 + uGMAR-3.3.1/uGMAR/R/GSMARconstructor.R | 29 +- uGMAR-3.3.1/uGMAR/R/MAINest.R | 106 +++------ uGMAR-3.3.1/uGMAR/R/argumentChecks.R | 72 ++---- uGMAR-3.3.1/uGMAR/R/diagnosticPlot.R | 12 - uGMAR-3.3.1/uGMAR/R/geneticAlgorithm.R | 77 +++--- uGMAR-3.3.1/uGMAR/R/loglikelihood.R | 76 +++--- uGMAR-3.3.1/uGMAR/R/parameterReforms.R | 2 uGMAR-3.3.1/uGMAR/R/pickAndChangeParams.R | 2 uGMAR-3.3.1/uGMAR/R/plotMethods.R | 4 uGMAR-3.3.1/uGMAR/R/printMethods.R | 16 - uGMAR-3.3.1/uGMAR/R/quantileResiduals.R | 7 uGMAR-3.3.1/uGMAR/R/standardErrors.R | 2 uGMAR-3.3.1/uGMAR/R/uGMAR.R | 8 uGMAR-3.3.1/uGMAR/R/uncondMoments.R | 12 - uGMAR-3.3.1/uGMAR/README.md | 13 - uGMAR-3.3.1/uGMAR/build/vignette.rds |binary uGMAR-3.3.1/uGMAR/inst/doc/uGMARpaper.R |only uGMAR-3.3.1/uGMAR/inst/doc/uGMARpaper.Rnw |only uGMAR-3.3.1/uGMAR/inst/doc/uGMARpaper.pdf |only uGMAR-3.3.1/uGMAR/man/GAfit.Rd | 89 +++---- uGMAR-3.3.1/uGMAR/man/GSMAR.Rd | 87 +++---- uGMAR-3.3.1/uGMAR/man/LR_test.Rd | 6 uGMAR-3.3.1/uGMAR/man/Wald_test.Rd | 6 uGMAR-3.3.1/uGMAR/man/add_data.Rd | 6 uGMAR-3.3.1/uGMAR/man/all_pos_ints.Rd | 2 uGMAR-3.3.1/uGMAR/man/alt_gsmar.Rd | 10 uGMAR-3.3.1/uGMAR/man/change_parametrization.Rd | 79 +++--- uGMAR-3.3.1/uGMAR/man/change_regime.Rd | 77 +++--- uGMAR-3.3.1/uGMAR/man/check_constraint_mat.Rd | 6 uGMAR-3.3.1/uGMAR/man/check_params_length.Rd | 73 +++--- uGMAR-3.3.1/uGMAR/man/condMoments.Rd | 81 +++---- uGMAR-3.3.1/uGMAR/man/cond_moment_plot.Rd | 6 uGMAR-3.3.1/uGMAR/man/cond_moments.Rd | 81 +++---- uGMAR-3.3.1/uGMAR/man/condmomentPlot.Rd | 6 uGMAR-3.3.1/uGMAR/man/diagnosticPlot.Rd | 6 uGMAR-3.3.1/uGMAR/man/diagnostic_plot.Rd | 6 uGMAR-3.3.1/uGMAR/man/extract_regime.Rd | 77 +++--- uGMAR-3.3.1/uGMAR/man/fitGSMAR.Rd | 67 +---- uGMAR-3.3.1/uGMAR/man/get_alpha_mt.Rd | 11 uGMAR-3.3.1/uGMAR/man/get_ar_roots.Rd | 6 uGMAR-3.3.1/uGMAR/man/get_minval.Rd | 2 uGMAR-3.3.1/uGMAR/man/get_regime_autocovs.Rd | 10 uGMAR-3.3.1/uGMAR/man/get_regime_means.Rd | 6 uGMAR-3.3.1/uGMAR/man/get_regime_vars.Rd | 10 uGMAR-3.3.1/uGMAR/man/get_test_Omega.Rd | 81 +++---- uGMAR-3.3.1/uGMAR/man/get_varying_h.Rd | 67 ++--- uGMAR-3.3.1/uGMAR/man/isStationary.Rd | 79 +++--- uGMAR-3.3.1/uGMAR/man/is_stationary.Rd | 79 +++--- uGMAR-3.3.1/uGMAR/man/is_stationary_int.Rd | 76 +++--- uGMAR-3.3.1/uGMAR/man/iterate_more.Rd | 6 uGMAR-3.3.1/uGMAR/man/loglikelihood.Rd | 81 +++---- uGMAR-3.3.1/uGMAR/man/loglikelihood_int.Rd | 93 ++++---- uGMAR-3.3.1/uGMAR/man/mixingWeights.Rd | 81 +++---- uGMAR-3.3.1/uGMAR/man/mixing_weights.Rd | 81 +++---- uGMAR-3.3.1/uGMAR/man/mixing_weights_int.Rd | 81 +++---- uGMAR-3.3.1/uGMAR/man/n_params.Rd | 6 uGMAR-3.3.1/uGMAR/man/parameter_checks.Rd | 47 +++- uGMAR-3.3.1/uGMAR/man/pick_alphas.Rd | 73 +++--- uGMAR-3.3.1/uGMAR/man/pick_dfs.Rd | 67 ++--- uGMAR-3.3.1/uGMAR/man/pick_pars.Rd | 73 +++--- uGMAR-3.3.1/uGMAR/man/pick_phi0.Rd | 73 +++--- uGMAR-3.3.1/uGMAR/man/predict.gsmar.Rd | 6 uGMAR-3.3.1/uGMAR/man/profile_logliks.Rd | 14 - uGMAR-3.3.1/uGMAR/man/quantileResidualPlot.Rd | 6 uGMAR-3.3.1/uGMAR/man/quantileResidualTests.Rd | 6 uGMAR-3.3.1/uGMAR/man/quantileResiduals.Rd | 82 +++---- uGMAR-3.3.1/uGMAR/man/quantile_residual_plot.Rd | 6 uGMAR-3.3.1/uGMAR/man/quantile_residual_tests.Rd | 8 uGMAR-3.3.1/uGMAR/man/quantile_residuals.Rd | 82 +++---- uGMAR-3.3.1/uGMAR/man/quantile_residuals_int.Rd | 82 +++---- uGMAR-3.3.1/uGMAR/man/randomIndividual.Rd | 73 +++--- uGMAR-3.3.1/uGMAR/man/random_ind.Rd | 73 +++--- uGMAR-3.3.1/uGMAR/man/random_ind_int.Rd | 73 +++--- uGMAR-3.3.1/uGMAR/man/random_regime.Rd | 6 uGMAR-3.3.1/uGMAR/man/reform_constrained_pars.Rd | 73 +++--- uGMAR-3.3.1/uGMAR/man/reform_parameters.Rd | 60 ++--- uGMAR-3.3.1/uGMAR/man/reform_restricted_pars.Rd | 69 ++---- uGMAR-3.3.1/uGMAR/man/remove_all_constraints.Rd | 73 +++--- uGMAR-3.3.1/uGMAR/man/simulateGSMAR.Rd | 6 uGMAR-3.3.1/uGMAR/man/sort_components.Rd | 67 ++--- uGMAR-3.3.1/uGMAR/man/standard_errors.Rd | 77 +++--- uGMAR-3.3.1/uGMAR/man/stmar_to_gstmar.Rd | 6 uGMAR-3.3.1/uGMAR/man/stmarpars_to_gstmar.Rd | 75 +++--- uGMAR-3.3.1/uGMAR/man/swap_parametrization.Rd | 6 uGMAR-3.3.1/uGMAR/man/uGMAR.Rd | 8 uGMAR-3.3.1/uGMAR/man/uncond_moments.Rd | 10 uGMAR-3.3.1/uGMAR/man/uncond_moments_int.Rd | 85 +++---- uGMAR-3.3.1/uGMAR/man/warn_ar_roots.Rd |only uGMAR-3.3.1/uGMAR/man/warn_dfs.Rd | 67 ++--- uGMAR-3.3.1/uGMAR/tests/testthat/test_argumentChecks.R | 7 uGMAR-3.3.1/uGMAR/tests/testthat/test_loglikelihood.R | 5 uGMAR-3.3.1/uGMAR/vignettes/figures |only uGMAR-3.3.1/uGMAR/vignettes/refs.bib |only uGMAR-3.3.1/uGMAR/vignettes/uGMARpaper.Rnw |only 100 files changed, 1857 insertions(+), 1972 deletions(-)
Title: Synthetic Likelihood Methods for Intractable Likelihoods
Description: Framework to perform synthetic likelihood inference
for models where the likelihood function is unavailable or
intractable.
Author: Matteo Fasiolo and Simon Wood
Maintainer: Matteo Fasiolo <matteo.fasiolo@gmail.com>
Diff between synlik versions 0.1.2 dated 2018-05-23 and 0.1.3 dated 2021-05-12
DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- build/vignette.rds |binary inst/doc/synlik.R | 48 ++++++++++++++++++++++++------------------------ inst/doc/synlik.html | 38 +++++++++++++++++++------------------- man/synlik-package.Rd | 1 - 6 files changed, 54 insertions(+), 55 deletions(-)
More information about RedisBaseContainer at CRAN
Permanent link
Title: A GUI for Planar Location Problems
Description: A GUI for the orloca package is provided as a Rcmdr plug-in. The package deals with continuos planar location problems.
Author: Manuel Munoz-Marquez <manuel.munoz@uca.es>
Maintainer: Manuel Munoz-Marquez <manuel.munoz@uca.es>
Diff between RcmdrPlugin.orloca versions 4.7 dated 2018-11-05 and 4.8.2 dated 2021-05-12
RcmdrPlugin.orloca-4.7/RcmdrPlugin.orloca/inst/po |only RcmdrPlugin.orloca-4.8.2/RcmdrPlugin.orloca/ChangeLog | 7 RcmdrPlugin.orloca-4.8.2/RcmdrPlugin.orloca/DESCRIPTION | 19 RcmdrPlugin.orloca-4.8.2/RcmdrPlugin.orloca/MD5 | 31 RcmdrPlugin.orloca-4.8.2/RcmdrPlugin.orloca/build/vignette.rds |binary RcmdrPlugin.orloca-4.8.2/RcmdrPlugin.orloca/inst/doc/localizacionplanaRcmdr.R | 22 RcmdrPlugin.orloca-4.8.2/RcmdrPlugin.orloca/inst/doc/localizacionplanaRcmdr.Rmd | 9 RcmdrPlugin.orloca-4.8.2/RcmdrPlugin.orloca/inst/doc/localizacionplanaRcmdr.html | 454 ++++++++-- RcmdrPlugin.orloca-4.8.2/RcmdrPlugin.orloca/inst/doc/planarlocationRcmdr.R | 22 RcmdrPlugin.orloca-4.8.2/RcmdrPlugin.orloca/inst/doc/planarlocationRcmdr.Rmd | 7 RcmdrPlugin.orloca-4.8.2/RcmdrPlugin.orloca/inst/doc/planarlocationRcmdr.html | 446 ++++++++- RcmdrPlugin.orloca-4.8.2/RcmdrPlugin.orloca/man/RcmdrPlugin.orloca-package.Rd | 12 RcmdrPlugin.orloca-4.8.2/RcmdrPlugin.orloca/man/RcmdrPlugin.orloca.es-package.Rd | 14 RcmdrPlugin.orloca-4.8.2/RcmdrPlugin.orloca/po/R-RcmdrPlugin.orloca-es.mo |binary RcmdrPlugin.orloca-4.8.2/RcmdrPlugin.orloca/po/R-RcmdrPlugin.orloca-es.po | 24 RcmdrPlugin.orloca-4.8.2/RcmdrPlugin.orloca/vignettes/localizacionplanaRcmdr.Rmd | 9 RcmdrPlugin.orloca-4.8.2/RcmdrPlugin.orloca/vignettes/planarlocationRcmdr.Rmd | 7 17 files changed, 826 insertions(+), 257 deletions(-)
More information about RcmdrPlugin.orloca at CRAN
Permanent link
Title: Enhancements for 'broom' and 'easystats' Package Families
Description: Provides helper functions that assist in data
analysis workflows involving regression analyses. The goal is to
combine the functionality offered by different set of packages
('broom', 'broom.mixed', 'parameters', and 'performance') through a
common syntax to return tidy dataframes containing model parameters
and performance measure summaries. The 'grouped_' variants of the
generics provides a convenient way to execute functions across a
combination of grouping variable(s) in a dataframe.
Author: Indrajeet Patil [aut, cre, cph]
(<https://orcid.org/0000-0003-1995-6531>, @patilindrajeets)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between broomExtra versions 4.2.1 dated 2021-02-21 and 4.2.3 dated 2021-05-12
broomExtra-4.2.1/broomExtra/build |only broomExtra-4.2.1/broomExtra/man/figures/lifecycle-archived.svg |only broomExtra-4.2.1/broomExtra/man/figures/lifecycle-defunct.svg |only broomExtra-4.2.1/broomExtra/man/figures/lifecycle-deprecated.svg |only broomExtra-4.2.1/broomExtra/man/figures/lifecycle-experimental.svg |only broomExtra-4.2.1/broomExtra/man/figures/lifecycle-maturing.svg |only broomExtra-4.2.1/broomExtra/man/figures/lifecycle-questioning.svg |only broomExtra-4.2.1/broomExtra/man/figures/lifecycle-stable.svg |only broomExtra-4.2.1/broomExtra/man/figures/lifecycle-superseded.svg |only broomExtra-4.2.3/broomExtra/DESCRIPTION | 11 broomExtra-4.2.3/broomExtra/LICENSE | 1348 ++++---- broomExtra-4.2.3/broomExtra/MD5 | 61 broomExtra-4.2.3/broomExtra/NAMESPACE | 88 broomExtra-4.2.3/broomExtra/NEWS.md | 239 - broomExtra-4.2.3/broomExtra/R/generics.R | 224 - broomExtra-4.2.3/broomExtra/R/global_vars.R | 14 broomExtra-4.2.3/broomExtra/R/grouped_generics.R | 307 - broomExtra-4.2.3/broomExtra/R/hybrid_easystats.R | 255 - broomExtra-4.2.3/broomExtra/R/reexports.R | 59 broomExtra-4.2.3/broomExtra/README.md | 1662 ++++------ broomExtra-4.2.3/broomExtra/inst/WORDLIST | 61 broomExtra-4.2.3/broomExtra/man/augment.Rd | 9 broomExtra-4.2.3/broomExtra/man/glance.Rd | 9 broomExtra-4.2.3/broomExtra/man/glance_performance.Rd | 64 broomExtra-4.2.3/broomExtra/man/grouped_augment.Rd | 7 broomExtra-4.2.3/broomExtra/man/grouped_glance.Rd | 7 broomExtra-4.2.3/broomExtra/man/grouped_tidy.Rd | 7 broomExtra-4.2.3/broomExtra/man/reexports.Rd | 52 broomExtra-4.2.3/broomExtra/man/tidy.Rd | 9 broomExtra-4.2.3/broomExtra/man/tidy_parameters.Rd | 76 broomExtra-4.2.3/broomExtra/tests/spelling.R | 12 broomExtra-4.2.3/broomExtra/tests/testthat.R | 8 broomExtra-4.2.3/broomExtra/tests/testthat/_snaps |only broomExtra-4.2.3/broomExtra/tests/testthat/test-generics.R | 140 broomExtra-4.2.3/broomExtra/tests/testthat/test-grouped_generics.R | 204 - broomExtra-4.2.3/broomExtra/tests/testthat/test-hybrid_generics.R | 164 36 files changed, 2513 insertions(+), 2584 deletions(-)
Title: Multivariate Generalized Kernel Smoothing and Related
Statistical Methods
Description: Probability mass functions (PMFs), probability density functions (PDFs), cumulative distribution functions (CDFs) and quantile functions, mainly via (optionally bounded/truncated) kernel smoothing. In the continuous case, there's support for univariate, multivariate and conditional distributions, including distributions that are both multivariate and conditional. Refer to the book "Kernel Smoothing" by Wand and Jones (1995), whose methods are generalized by the methods here. Also, supports categorical distributions, mixed conditional distributions (with mixed input types) and smooth empirical-like distributions, some of which, can be used for statistical classification. There are extensions for computing distance matrices (between distributions), multivariate probabilities, multivariate random numbers, moment-based statistics and mode estimates.
Author: Abby Spurdle
Maintainer: Abby Spurdle <spurdle.a@gmail.com>
Diff between probhat versions 0.4.0 dated 2021-04-02 and 0.4.1 dated 2021-05-12
probhat-0.4.0/probhat/man/80_mockup_function_objects.Rd |only probhat-0.4.1/probhat/DESCRIPTION | 10 probhat-0.4.1/probhat/MD5 | 86 +-- probhat-0.4.1/probhat/NAMESPACE | 3 probhat-0.4.1/probhat/R/init.r | 2 probhat-0.4.1/probhat/R/intd.r | 2 probhat-0.4.1/probhat/R/kernel.r | 4 probhat-0.4.1/probhat/R/ph.r | 31 - probhat-0.4.1/probhat/R/ph2.r | 2 probhat-0.4.1/probhat/R/ph_categorical.r | 2 probhat-0.4.1/probhat/R/ph_cks_constructors.r | 36 - probhat-0.4.1/probhat/R/ph_cks_eval1.r | 111 +--- probhat-0.4.1/probhat/R/ph_cks_eval2.r | 56 +- probhat-0.4.1/probhat/R/ph_cks_init.r | 255 +++++------ probhat-0.4.1/probhat/R/ph_dks_eval.r | 2 probhat-0.4.1/probhat/R/ph_dks_init.r | 2 probhat-0.4.1/probhat/R/ph_empirical.r | 2 probhat-0.4.1/probhat/R/ph_mix.r | 14 probhat-0.4.1/probhat/R/pk_distribution_set.r | 28 - probhat-0.4.1/probhat/R/plots_cpd.r | 9 probhat-0.4.1/probhat/R/plots_dpd.r | 2 probhat-0.4.1/probhat/R/plots_mv.r | 2 probhat-0.4.1/probhat/R/plots_other.r | 31 - probhat-0.4.1/probhat/R/x_kubik_ext.r | 4 probhat-0.4.1/probhat/R/x_math1.r | 2 probhat-0.4.1/probhat/R/x_math2.r | 2 probhat-0.4.1/probhat/R/x_probmv.r | 68 ++ probhat-0.4.1/probhat/R/x_stats.r | 4 probhat-0.4.1/probhat/R/y_dataprep.r | 4 probhat-0.4.1/probhat/inst/doc/probhat.R | 216 +++++---- probhat-0.4.1/probhat/inst/doc/probhat.Rnw | 134 ++++- probhat-0.4.1/probhat/inst/doc/probhat.pdf |binary probhat-0.4.1/probhat/inst/doc/probhatx_kernels.pdf |binary probhat-0.4.1/probhat/man/11_names_methods.Rd | 4 probhat-0.4.1/probhat/man/20_discrete_kernel_smoothing.Rd | 4 probhat-0.4.1/probhat/man/21_continuous_kernel_smoothing.Rd | 32 - probhat-0.4.1/probhat/man/22_categorical_distributions.Rd | 2 probhat-0.4.1/probhat/man/23_mixed_conditional.Rd | 30 - probhat-0.4.1/probhat/man/24_empirical-like_distributions.Rd | 2 probhat-0.4.1/probhat/man/31_distribution_sets.Rd | 54 +- probhat-0.4.1/probhat/man/44_other_plot_methods.Rd | 4 probhat-0.4.1/probhat/man/60_distance_matrices.Rd | 47 +- probhat-0.4.1/probhat/man/80_runtime_function_objects.Rd |only probhat-0.4.1/probhat/man/91_other_functions.Rd | 10 probhat-0.4.1/probhat/vignettes/probhat.Rnw | 134 ++++- 45 files changed, 848 insertions(+), 601 deletions(-)
Title: Multi-Trait Dissimilarity with more Uniform Contributions
Description: R function gawdis() produces multi-trait dissimilarity with more uniform contributions of different traits. de Bello et al. (2021) <doi:10.1111/2041-210X.13537> presented the approach based on minimizing the differences in the correlation between the dissimilarity of each trait, or groups of traits, and the multi-trait dissimilarity. This is done using either an analytic or a numerical solution, both available in the function.
Author: Francesco de Bello [aut],
Zoltan Botta-Dukat [aut],
Jan Leps [aut],
Pavel Fibich [aut, cre]
Maintainer: Pavel Fibich <pavel.fibich@prf.jcu.cz>
Diff between gawdis versions 0.1.2 dated 2020-12-17 and 0.1.3 dated 2021-05-12
DESCRIPTION | 6 MD5 | 12 - R/gawdis.R | 4 README.md | 2 build/vignette.rds |binary inst/CITATION | 2 inst/doc/gawdis.html | 565 ++++++++++++++++----------------------------------- 7 files changed, 199 insertions(+), 392 deletions(-)
Title: Running Commands Remotely on 'Gridengine' Clusters
Description: Run lapply() calls in parallel by submitting them to
'gridengine' clusters using the 'qsub' command.
Author: Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>,
rcannood),
Wouter Saelens [aut] (<https://orcid.org/0000-0002-7114-6248>, zouter)
Maintainer: Robrecht Cannoodt <rcannood@gmail.com>
Diff between qsub versions 1.1.1 dated 2021-01-29 and 1.1.2 dated 2021-05-12
DESCRIPTION | 7 +++---- MD5 | 10 +++++----- NAMESPACE | 1 - NEWS.md | 8 ++++++++ R/qsub_config.R | 19 +++++++++++++++++-- tests/testthat/test-config_file_location.R | 7 ++++++- 6 files changed, 39 insertions(+), 13 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-01-12 1.3
2009-12-16 1.2
2009-12-09 1.1
2009-11-26 1.0
Title: Syntactically Awesome Style Sheets ('Sass')
Description: An 'SCSS' compiler, powered by the 'LibSass' library. With this,
R developers can use variables, inheritance, and functions to generate
dynamic style sheets. The package uses the 'Sass CSS' extension language,
which is stable, powerful, and CSS compatible.
Author: Joe Cheng [aut],
Timothy Mastny [aut],
Richard Iannone [aut] (<https://orcid.org/0000-0003-3925-190X>),
Barret Schloerke [aut] (<https://orcid.org/0000-0001-9986-114X>),
Carson Sievert [aut, cre] (<https://orcid.org/0000-0002-4958-2844>),
Christophe Dervieux [ctb] (<https://orcid.org/0000-0003-4474-2498>),
RStudio [cph, fnd],
Sass Open Source Foundation [ctb, cph] (LibSass library),
Greter Marcel [ctb, cph] (LibSass library),
Mifsud Michael [ctb, cph] (LibSass library),
Hampton Catlin [ctb, cph] (LibSass library),
Natalie Weizenbaum [ctb, cph] (LibSass library),
Chris Eppstein [ctb, cph] (LibSass library),
Adams Joseph [ctb, cph] (json.cpp),
Trifunovic Nemanja [ctb, cph] (utf8.h)
Maintainer: Carson Sievert <carson@rstudio.com>
Diff between sass versions 0.3.1 dated 2021-01-24 and 0.4.0 dated 2021-05-12
DESCRIPTION | 15 MD5 | 88 +- NAMESPACE | 14 NEWS.md | 22 R/as_sass.R | 87 +- R/fonts.R |only R/format.R | 13 R/layers.R | 116 ++- R/options.R | 128 ++- R/sass.R | 46 - R/sass_cache.R | 74 - R/utils.R | 20 inst/doc/sass.R | 49 - inst/doc/sass.Rmd | 133 ++- inst/doc/sass.html | 915 ++++++++++-------------- man/as_sass.Rd | 24 man/font_face.Rd |only man/output_template.Rd | 13 man/sass.Rd | 17 man/sass_cache_context_dir.Rd | 17 man/sass_cache_get.Rd | 46 - man/sass_import.Rd | 5 man/sass_layer.Rd | 56 - man/sass_options.Rd | 46 - man/sass_partial.Rd | 5 tests/testthat/_snaps |only tests/testthat/test-assets/test-layer-file.scss |only tests/testthat/test-cache.R | 30 tests/testthat/test-compile.R | 2 tests/testthat/test-extend.R | 2 tests/testthat/test-font-objects.R |only tests/testthat/test-html-dependencies.R | 20 tests/testthat/test-import.R | 2 tests/testthat/test-include-paths.R | 2 tests/testthat/test-layers-list.R | 9 tests/testthat/test-layers.R | 47 - tests/testthat/test-mixins.R | 2 tests/testthat/test-nesting.R | 2 tests/testthat/test-option-errors.R | 47 + tests/testthat/test-options.R | 2 tests/testthat/test-output.R | 2 tests/testthat/test-unicode.R | 2 tests/testthat/test-utils.R | 33 tests/testthat/test-variables.R | 2 vignettes/hello-pacifico.png |only vignettes/sass.Rmd | 133 ++- 46 files changed, 1326 insertions(+), 962 deletions(-)
Title: General Package for Meta-Analysis
Description: User-friendly general package providing standard methods for meta-analysis and supporting Schwarzer, Carpenter, and Rücker <DOI:10.1007/978-3-319-21416-0>, "Meta-Analysis with R" (2015):
- fixed effect and random effects meta-analysis;
- several plots (forest, funnel, Galbraith / radial, L'Abbe, Baujat, bubble);
- statistical tests and trim-and-fill method to evaluate bias in meta-analysis;
- import data from 'RevMan 5';
- prediction interval, Hartung-Knapp method for random effects model;
- cumulative meta-analysis and leave-one-out meta-analysis;
- meta-regression;
- generalised linear mixed models;
- produce forest plot summarising several (subgroup) meta-analyses.
Author: Guido Schwarzer [cre, aut] (<https://orcid.org/0000-0001-6214-9087>)
Maintainer: Guido Schwarzer <sc@imbi.uni-freiburg.de>
Diff between meta versions 4.18-0 dated 2021-03-05 and 4.18-1 dated 2021-05-12
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NEWS.md | 34 ++++++++++++++++++++++++++++++++++ R/calcH.R | 4 ++-- R/forest.R | 20 ++++++++++++++++---- R/linregcore.R | 28 +++++++++++++++++++--------- R/metabias.R | 18 ++++++++++-------- R/metabind.R | 3 ++- R/metagen.R | 2 +- man/forest.meta.Rd | 8 ++++++++ man/metabias.Rd | 3 ++- 11 files changed, 108 insertions(+), 40 deletions(-)
Title: Easily Create Presentation-Ready Display Tables
Description: Build display tables from tabular data with an easy-to-use set of
functions. With its progressive approach, we can construct display tables
with a cohesive set of table parts. Table values can be formatted using any
of the included formatting functions. Footnotes and cell styles can be
precisely added through a location targeting system. The way in which 'gt'
handles things for you means that you don't often have to worry about the
fine details.
Author: Richard Iannone [aut, cre] (<https://orcid.org/0000-0003-3925-190X>),
Joe Cheng [aut],
Barret Schloerke [aut] (<https://orcid.org/0000-0001-9986-114X>),
RStudio [cph, fnd]
Maintainer: Richard Iannone <rich@rstudio.com>
Diff between gt versions 0.2.2 dated 2020-08-05 and 0.3.0 dated 2021-05-12
gt-0.2.2/gt/R/dt_stub_others.R |only gt-0.2.2/gt/README.md |only gt-0.2.2/gt/man/cells_data.Rd |only gt-0.2.2/gt/man/figures/rstudio-cloud-example.png |only gt-0.2.2/gt/tests/testthat/test-resolver_core.R |only gt-0.3.0/gt/DESCRIPTION | 26 gt-0.3.0/gt/LICENSE | 2 gt-0.3.0/gt/MD5 | 520 +-- gt-0.3.0/gt/NAMESPACE | 12 gt-0.3.0/gt/NEWS.md | 69 gt-0.3.0/gt/R/build_data.R | 51 gt-0.3.0/gt/R/data_color.R | 12 gt-0.3.0/gt/R/datasets.R | 9 gt-0.3.0/gt/R/dt_body.R | 2 gt-0.3.0/gt/R/dt_boxhead.R | 55 gt-0.3.0/gt/R/dt_cols_merge.R | 2 gt-0.3.0/gt/R/dt_groups_rows.R | 49 gt-0.3.0/gt/R/dt_heading.R | 5 gt-0.3.0/gt/R/dt_options.R | 6 gt-0.3.0/gt/R/dt_row_groups.R | 4 gt-0.3.0/gt/R/dt_spanners.R | 41 gt-0.3.0/gt/R/dt_stub_df.R | 56 gt-0.3.0/gt/R/dt_stubhead.R | 2 gt-0.3.0/gt/R/dt_summary.R | 77 gt-0.3.0/gt/R/dt_transforms.R | 13 gt-0.3.0/gt/R/export.R | 114 gt-0.3.0/gt/R/format_data.R | 654 ++-- gt-0.3.0/gt/R/gt-package.R | 1 gt-0.3.0/gt/R/gt.R | 68 gt-0.3.0/gt/R/gt_preview.R | 11 gt-0.3.0/gt/R/helpers.R | 1258 ++++++--- gt-0.3.0/gt/R/image.R | 6 gt-0.3.0/gt/R/info_tables.R | 142 - gt-0.3.0/gt/R/knitr-utils.R |only gt-0.3.0/gt/R/location_methods.R | 98 gt-0.3.0/gt/R/modify_columns.R | 574 +++- gt-0.3.0/gt/R/modify_rows.R | 73 gt-0.3.0/gt/R/opts.R | 46 gt-0.3.0/gt/R/print.R | 33 gt-0.3.0/gt/R/reexports.R | 4 gt-0.3.0/gt/R/render_as_html.R | 29 gt-0.3.0/gt/R/resolver.R | 396 +- gt-0.3.0/gt/R/summary_rows.R | 31 gt-0.3.0/gt/R/sysdata.rda |binary gt-0.3.0/gt/R/tab_create_modify.R | 529 ++- gt-0.3.0/gt/R/text_transform.R | 38 gt-0.3.0/gt/R/utils.R | 326 ++ gt-0.3.0/gt/R/utils_formatters.R | 134 gt-0.3.0/gt/R/utils_render_common.R | 228 + gt-0.3.0/gt/R/utils_render_footnotes.R | 229 - gt-0.3.0/gt/R/utils_render_html.R | 489 ++- gt-0.3.0/gt/R/utils_render_latex.R | 89 gt-0.3.0/gt/R/utils_render_rtf.R | 1789 ++++++++++--- gt-0.3.0/gt/R/zzz.R | 11 gt-0.3.0/gt/inst/css/gt_styles_default.scss | 1 gt-0.3.0/gt/man/adjust_luminance.Rd | 12 gt-0.3.0/gt/man/as_rtf.Rd | 8 gt-0.3.0/gt/man/cell_borders.Rd | 10 gt-0.3.0/gt/man/cell_fill.Rd | 12 gt-0.3.0/gt/man/cell_text.Rd | 12 gt-0.3.0/gt/man/cells_body.Rd | 63 gt-0.3.0/gt/man/cells_column_labels.Rd | 65 gt-0.3.0/gt/man/cells_column_spanners.Rd | 67 gt-0.3.0/gt/man/cells_footnotes.Rd |only gt-0.3.0/gt/man/cells_grand_summary.Rd | 67 gt-0.3.0/gt/man/cells_group.Rd | 1 gt-0.3.0/gt/man/cells_row_groups.Rd | 65 gt-0.3.0/gt/man/cells_source_notes.Rd |only gt-0.3.0/gt/man/cells_stub.Rd | 71 gt-0.3.0/gt/man/cells_stub_grand_summary.Rd |only gt-0.3.0/gt/man/cells_stub_summary.Rd |only gt-0.3.0/gt/man/cells_stubhead.Rd | 59 gt-0.3.0/gt/man/cells_summary.Rd | 79 gt-0.3.0/gt/man/cells_title.Rd | 62 gt-0.3.0/gt/man/cols_align.Rd | 12 gt-0.3.0/gt/man/cols_hide.Rd | 25 gt-0.3.0/gt/man/cols_label.Rd | 2 gt-0.3.0/gt/man/cols_merge.Rd | 23 gt-0.3.0/gt/man/cols_merge_n_pct.Rd |only gt-0.3.0/gt/man/cols_merge_range.Rd | 17 gt-0.3.0/gt/man/cols_merge_uncert.Rd | 18 gt-0.3.0/gt/man/cols_move.Rd | 6 gt-0.3.0/gt/man/cols_move_to_end.Rd | 6 gt-0.3.0/gt/man/cols_move_to_start.Rd | 6 gt-0.3.0/gt/man/cols_unhide.Rd |only gt-0.3.0/gt/man/cols_width.Rd | 8 gt-0.3.0/gt/man/currency.Rd | 8 gt-0.3.0/gt/man/data_color.Rd | 5 gt-0.3.0/gt/man/default_fonts.Rd | 8 gt-0.3.0/gt/man/escape_latex.Rd | 6 gt-0.3.0/gt/man/extract_summary.Rd | 8 gt-0.3.0/gt/man/figures/man_adjust_luminance_1.png |binary gt-0.3.0/gt/man/figures/man_cell_borders_1.png |binary gt-0.3.0/gt/man/figures/man_cell_text_1.png |binary gt-0.3.0/gt/man/figures/man_cells_body_1.png |binary gt-0.3.0/gt/man/figures/man_cells_column_spanners_1.png |binary gt-0.3.0/gt/man/figures/man_cells_footnotes_1.png |only gt-0.3.0/gt/man/figures/man_cells_grand_summary_1.png |binary gt-0.3.0/gt/man/figures/man_cells_row_groups_1.png |binary gt-0.3.0/gt/man/figures/man_cells_source_notes_1.png |only gt-0.3.0/gt/man/figures/man_cells_stub_grand_summary_1.png |only gt-0.3.0/gt/man/figures/man_cells_stub_summary_1.png |only 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gt-0.3.0/gt/man/grand_summary_rows.Rd | 4 gt-0.3.0/gt/man/gt-options.Rd | 1 gt-0.3.0/gt/man/gt-package.Rd | 2 gt-0.3.0/gt/man/gt.Rd | 6 gt-0.3.0/gt/man/gt_latex_dependencies.Rd | 6 gt-0.3.0/gt/man/gtsave.Rd | 5 gt-0.3.0/gt/man/html.Rd | 4 gt-0.3.0/gt/man/local_image.Rd | 2 gt-0.3.0/gt/man/md.Rd | 4 gt-0.3.0/gt/man/opt_align_table_header.Rd | 4 gt-0.3.0/gt/man/opt_all_caps.Rd | 7 gt-0.3.0/gt/man/opt_css.Rd | 4 gt-0.3.0/gt/man/opt_footnote_marks.Rd | 1 gt-0.3.0/gt/man/opt_row_striping.Rd | 4 gt-0.3.0/gt/man/opt_table_font.Rd | 3 gt-0.3.0/gt/man/opt_table_lines.Rd | 4 gt-0.3.0/gt/man/opt_table_outline.Rd | 4 gt-0.3.0/gt/man/pct.Rd | 6 gt-0.3.0/gt/man/print.rtf_text.Rd |only gt-0.3.0/gt/man/px.Rd | 6 gt-0.3.0/gt/man/random_id.Rd | 6 gt-0.3.0/gt/man/reexports.Rd | 3 gt-0.3.0/gt/man/row_group_order.Rd | 24 gt-0.3.0/gt/man/summary_rows.Rd | 4 gt-0.3.0/gt/man/tab_footnote.Rd | 35 gt-0.3.0/gt/man/tab_options.Rd | 27 gt-0.3.0/gt/man/tab_row_group.Rd | 43 gt-0.3.0/gt/man/tab_spanner.Rd | 17 gt-0.3.0/gt/man/tab_spanner_delim.Rd | 20 gt-0.3.0/gt/man/tab_style.Rd | 24 gt-0.3.0/gt/man/text_transform.Rd | 8 gt-0.3.0/gt/man/web_image.Rd | 2 gt-0.3.0/gt/tests/testthat/_snaps |only gt-0.3.0/gt/tests/testthat/helper-gt_attr_expectations.R | 13 gt-0.3.0/gt/tests/testthat/test-cols_align.R | 10 gt-0.3.0/gt/tests/testthat/test-cols_merge.R | 140 - gt-0.3.0/gt/tests/testthat/test-cols_move.R | 18 gt-0.3.0/gt/tests/testthat/test-cols_width.R | 604 +++- gt-0.3.0/gt/tests/testthat/test-cols_width_rtf.R |only gt-0.3.0/gt/tests/testthat/test-conditional_fmt.R | 37 gt-0.3.0/gt/tests/testthat/test-data_color.R | 66 gt-0.3.0/gt/tests/testthat/test-fmt_bytes.R |only gt-0.3.0/gt/tests/testthat/test-fmt_markdown.R | 2 gt-0.3.0/gt/tests/testthat/test-fmt_missing.R | 8 gt-0.3.0/gt/tests/testthat/test-fmt_number.R | 442 +-- gt-0.3.0/gt/tests/testthat/test-fmt_percent.R | 224 + gt-0.3.0/gt/tests/testthat/test-gt_object.R | 179 + gt-0.3.0/gt/tests/testthat/test-gtsave.R | 334 ++ gt-0.3.0/gt/tests/testthat/test-h_md_html.R | 12 gt-0.3.0/gt/tests/testthat/test-image.R | 2 gt-0.3.0/gt/tests/testthat/test-info_tables.R | 2 gt-0.3.0/gt/tests/testthat/test-input_data_validation.R | 58 gt-0.3.0/gt/tests/testthat/test-l_cols_align.R | 6 gt-0.3.0/gt/tests/testthat/test-l_cols_merge.R | 48 gt-0.3.0/gt/tests/testthat/test-l_cols_move.R | 8 gt-0.3.0/gt/tests/testthat/test-l_conditional_fmt.R | 36 gt-0.3.0/gt/tests/testthat/test-l_fmt_markdown.R | 2 gt-0.3.0/gt/tests/testthat/test-l_fmt_missing.R | 8 gt-0.3.0/gt/tests/testthat/test-l_fmt_number.R | 206 - gt-0.3.0/gt/tests/testthat/test-l_fmt_percent.R | 166 - gt-0.3.0/gt/tests/testthat/test-l_row_group_order.R | 16 gt-0.3.0/gt/tests/testthat/test-l_tab_spanner_delim.R | 31 gt-0.3.0/gt/tests/testthat/test-l_table_parts.R | 180 + gt-0.3.0/gt/tests/testthat/test-location_cells.R | 275 + gt-0.3.0/gt/tests/testthat/test-r_table_parts.R |only gt-0.3.0/gt/tests/testthat/test-resolver.R |only gt-0.3.0/gt/tests/testthat/test-row_group_order.R | 23 gt-0.3.0/gt/tests/testthat/test-rtf_column_widths.R |only gt-0.3.0/gt/tests/testthat/test-rtf_page_numbering.R |only gt-0.3.0/gt/tests/testthat/test-summary_rows.R | 187 + gt-0.3.0/gt/tests/testthat/test-summary_rows_rtf.R |only gt-0.3.0/gt/tests/testthat/test-tab_footnote.R | 67 gt-0.3.0/gt/tests/testthat/test-tab_options.R | 4 gt-0.3.0/gt/tests/testthat/test-tab_spanner_delim.R | 377 ++ gt-0.3.0/gt/tests/testthat/test-tab_style.R | 64 gt-0.3.0/gt/tests/testthat/test-table_parts.R | 502 +++ gt-0.3.0/gt/tests/testthat/test-text_transform.R | 162 + gt-0.3.0/gt/tests/testthat/test-util_functions.R | 32 gt-0.3.0/gt/tests/testthat/test-utils.R |only gt-0.3.0/gt/tests/testthat/test-utils_render_html.R |only 277 files changed, 10370 insertions(+), 4164 deletions(-)
Title: Make 'ggplot2' Graphics Interactive
Description: Create interactive 'ggplot2' graphics using 'htmlwidgets'.
Author: David Gohel [aut, cre],
Panagiotis Skintzos [aut],
Mike Bostock [cph] (d3.js),
Speros Kokenes [cph] (d3-lasso),
Eric Shull [cph] (saveSvgAsPng js library),
Eric Book [ctb] (hline and vline geoms)
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between ggiraph versions 0.7.8 dated 2020-07-01 and 0.7.9 dated 2021-05-12
ggiraph-0.7.8/ggiraph/inst/htmlwidgets/lib/d3-5.7.0 |only ggiraph-0.7.8/ggiraph/inst/htmlwidgets/lib/d3-lasso-0.0.5/lasso.js |only ggiraph-0.7.8/ggiraph/inst/htmlwidgets/lib/ggiraphjs-0.3.0 |only ggiraph-0.7.9/ggiraph/DESCRIPTION | 47 +- ggiraph-0.7.9/ggiraph/MD5 | 97 ++-- ggiraph-0.7.9/ggiraph/NAMESPACE | 16 ggiraph-0.7.9/ggiraph/NEWS | 23 + ggiraph-0.7.9/ggiraph/R/dsvg.R | 36 + ggiraph-0.7.9/ggiraph/R/element_interactive.R | 19 ggiraph-0.7.9/ggiraph/R/fonts.R | 84 +++ ggiraph-0.7.9/ggiraph/R/geom_dotplot_interactive.R |only ggiraph-0.7.9/ggiraph/R/geom_label_interactive.R | 3 ggiraph-0.7.9/ggiraph/R/girafe.R | 2 ggiraph-0.7.9/ggiraph/R/girafe_options.R | 45 + ggiraph-0.7.9/ggiraph/R/interactive_circle_grob.R |only ggiraph-0.7.9/ggiraph/R/interactive_rect_grob.R | 7 ggiraph-0.7.9/ggiraph/R/interactive_roundrect_grob.R | 5 ggiraph-0.7.9/ggiraph/R/ipar.R | 23 - ggiraph-0.7.9/ggiraph/R/labeller_interactive.R |only ggiraph-0.7.9/ggiraph/R/svg.R | 2 ggiraph-0.7.9/ggiraph/R/utils.R | 25 - ggiraph-0.7.9/ggiraph/README.md | 55 +- ggiraph-0.7.9/ggiraph/build/vignette.rds |binary ggiraph-0.7.9/ggiraph/cleanup |only ggiraph-0.7.9/ggiraph/configure |only ggiraph-0.7.9/ggiraph/configure.win |only ggiraph-0.7.9/ggiraph/inst/doc/overview.Rmd | 4 ggiraph-0.7.9/ggiraph/inst/doc/overview.html | 227 ---------- ggiraph-0.7.9/ggiraph/inst/examples/rmd/xaringan |only ggiraph-0.7.9/ggiraph/inst/examples/shiny/maps/server.R | 2 ggiraph-0.7.9/ggiraph/inst/htmlwidgets/girafe.js | 113 ---- ggiraph-0.7.9/ggiraph/inst/htmlwidgets/girafe.yaml | 19 ggiraph-0.7.9/ggiraph/inst/htmlwidgets/lib/d3-bundle-5.16.0 |only ggiraph-0.7.9/ggiraph/inst/htmlwidgets/lib/ggiraphjs-0.4.1 |only ggiraph-0.7.9/ggiraph/inst/htmlwidgets/lib/save-svg-as-png-1.4.17 |only ggiraph-0.7.9/ggiraph/man/dsvg.Rd | 26 - ggiraph-0.7.9/ggiraph/man/font_family_exists.Rd |only ggiraph-0.7.9/ggiraph/man/geom_dotplot_interactive.Rd |only ggiraph-0.7.9/ggiraph/man/ggiraph-ggproto.Rd | 20 ggiraph-0.7.9/ggiraph/man/girafe.Rd | 2 ggiraph-0.7.9/ggiraph/man/id_label.Rd |only ggiraph-0.7.9/ggiraph/man/interactive_circle_grob.Rd |only ggiraph-0.7.9/ggiraph/man/ipar.Rd | 20 ggiraph-0.7.9/ggiraph/man/label_interactive.Rd | 22 ggiraph-0.7.9/ggiraph/man/labeller_interactive.Rd |only ggiraph-0.7.9/ggiraph/man/match_family.Rd |only ggiraph-0.7.9/ggiraph/man/opts_hover.Rd | 8 ggiraph-0.7.9/ggiraph/man/opts_selection.Rd | 8 ggiraph-0.7.9/ggiraph/man/opts_sizing.Rd | 4 ggiraph-0.7.9/ggiraph/man/opts_tooltip.Rd | 15 ggiraph-0.7.9/ggiraph/man/validated_fonts.Rd |only ggiraph-0.7.9/ggiraph/src/Makevars.in |only ggiraph-0.7.9/ggiraph/src/Makevars.win |only ggiraph-0.7.9/ggiraph/src/dsvg.cpp | 79 +-- ggiraph-0.7.9/ggiraph/src/fonts.cpp | 56 -- ggiraph-0.7.9/ggiraph/src/fonts.h | 9 ggiraph-0.7.9/ggiraph/src/raster.cpp |only ggiraph-0.7.9/ggiraph/src/raster.h |only ggiraph-0.7.9/ggiraph/tests/testthat/test-svg-text.R | 3 ggiraph-0.7.9/ggiraph/tools |only ggiraph-0.7.9/ggiraph/vignettes/overview.Rmd | 4 61 files changed, 549 insertions(+), 581 deletions(-)
Title: Run 'roxygen2' on (Chunks of) Single Code Files
Description: Have you ever been tempted to create 'roxygen2'-style documentation
comments for one of your functions that was not part of one of your
packages (yet)?
This is exactly what this package is about: running 'roxygen2' on
(chunks of) a single code file.
Author: Andreas Dominik Cullmann [aut, cre]
Maintainer: Andreas Dominik Cullmann <fvafrcu@mailbox.org>
Diff between document versions 3.3.1 dated 2021-03-31 and 3.3.2 dated 2021-05-12
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 5 ++++- build/vignette.rds |binary inst/files/minimal.html | 10 ++++++---- inst/runit_tests/expected_files.r | 3 ++- tests/testthat/test_basic.R | 15 +++++++++------ 7 files changed, 30 insertions(+), 21 deletions(-)
Title: Dive Analysis and Calibration
Description: Utilities to represent, visualize, filter, analyse, and summarize
time-depth recorder (TDR) data. Miscellaneous functions for
handling location data are also provided.
Author: Sebastian P. Luque <spluque@gmail.com>
Maintainer: Sebastian P. Luque <spluque@gmail.com>
Diff between diveMove versions 1.5.4 dated 2021-04-20 and 1.6.0 dated 2021-05-12
diveMove-1.5.4/diveMove/man/bout-methods.Rd |only diveMove-1.5.4/diveMove/man/bout-misc.Rd |only diveMove-1.5.4/diveMove/man/bouts2MLE.Rd |only diveMove-1.5.4/diveMove/man/bouts2NLS.Rd |only diveMove-1.5.4/diveMove/man/bouts3NLS.Rd |only diveMove-1.5.4/diveMove/man/extractDive-methods.Rd |only diveMove-1.5.4/diveMove/man/plotDiveModel-methods.Rd |only diveMove-1.5.4/diveMove/man/plotTDR-methods.Rd |only diveMove-1.5.4/diveMove/man/plotZOC-methods.Rd |only diveMove-1.5.4/diveMove/man/readTDR.Rd |only diveMove-1.5.4/diveMove/man/runquantile-internal.Rd |only diveMove-1.5.4/diveMove/man/timeBudget-methods.Rd |only diveMove-1.6.0/diveMove/DESCRIPTION | 17 diveMove-1.6.0/diveMove/MD5 | 104 + diveMove-1.6.0/diveMove/NAMESPACE | 41 diveMove-1.6.0/diveMove/NEWS | 13 diveMove-1.6.0/diveMove/R/AllClass.R | 211 +++ diveMove-1.6.0/diveMove/R/AllGenerics.R | 45 diveMove-1.6.0/diveMove/R/AllMethod.R | 1063 ++++++++++++++++++- diveMove-1.6.0/diveMove/R/austFilter.R | 194 ++- diveMove-1.6.0/diveMove/R/bouts.R | 701 +----------- diveMove-1.6.0/diveMove/R/bouts_helpers.R |only diveMove-1.6.0/diveMove/R/calibrate.R | 409 ++++++- diveMove-1.6.0/diveMove/R/detDive.R | 48 diveMove-1.6.0/diveMove/R/detPhase.R | 61 - diveMove-1.6.0/diveMove/R/distSpeed.R | 50 diveMove-1.6.0/diveMove/R/diveMove-defunct.R |only diveMove-1.6.0/diveMove/R/diveMove-deprecated.R |only diveMove-1.6.0/diveMove/R/diveStats.R | 114 +- diveMove-1.6.0/diveMove/R/oneDiveStats.R | 4 diveMove-1.6.0/diveMove/R/readLocs.R | 64 - diveMove-1.6.0/diveMove/R/readTDR.R | 1 diveMove-1.6.0/diveMove/R/runquantile.R | 182 +++ diveMove-1.6.0/diveMove/R/stampDive.R | 7 diveMove-1.6.0/diveMove/build/vignette.rds |binary diveMove-1.6.0/diveMove/inst/doc/diveMove.html | 4 diveMove-1.6.0/diveMove/man/Bouts-class.Rd |only diveMove-1.6.0/diveMove/man/TDR-class.Rd | 112 -- diveMove-1.6.0/diveMove/man/TDRcalibrate-class.Rd | 197 +-- diveMove-1.6.0/diveMove/man/austFilter.Rd | 234 ++-- diveMove-1.6.0/diveMove/man/boutfreqs.Rd |only diveMove-1.6.0/diveMove/man/boutinit.Rd |only diveMove-1.6.0/diveMove/man/bouts-internal.Rd |only diveMove-1.6.0/diveMove/man/boutsBEC.Rd |only diveMove-1.6.0/diveMove/man/boutsCDF.Rd |only diveMove-1.6.0/diveMove/man/boutsMLEll.Rd |only diveMove-1.6.0/diveMove/man/boutsNLSll.Rd |only diveMove-1.6.0/diveMove/man/calibrateDepth.Rd | 597 +++++----- diveMove-1.6.0/diveMove/man/calibrateSpeed.Rd | 124 +- diveMove-1.6.0/diveMove/man/createTDR.Rd |only diveMove-1.6.0/diveMove/man/detDive-internal.Rd | 73 - diveMove-1.6.0/diveMove/man/detPhase-internal.Rd | 100 - diveMove-1.6.0/diveMove/man/distSpeed.Rd | 70 - diveMove-1.6.0/diveMove/man/diveModel-class.Rd | 130 -- diveMove-1.6.0/diveMove/man/diveMove-defunct.Rd |only diveMove-1.6.0/diveMove/man/diveMove-deprecated.Rd |only diveMove-1.6.0/diveMove/man/diveMove-package.Rd | 12 diveMove-1.6.0/diveMove/man/diveStats.Rd | 190 +-- diveMove-1.6.0/diveMove/man/dot-runquantile.Rd |only diveMove-1.6.0/diveMove/man/extractDive.Rd |only diveMove-1.6.0/diveMove/man/fitMLEbouts.Rd |only diveMove-1.6.0/diveMove/man/fitNLSbouts.Rd |only diveMove-1.6.0/diveMove/man/labelBouts.Rd |only diveMove-1.6.0/diveMove/man/plotBouts.Rd |only diveMove-1.6.0/diveMove/man/plotBoutsCDF.Rd |only diveMove-1.6.0/diveMove/man/plotDiveModel.Rd |only diveMove-1.6.0/diveMove/man/plotTDR.Rd |only diveMove-1.6.0/diveMove/man/plotZOC.Rd |only diveMove-1.6.0/diveMove/man/readLocs.Rd | 123 +- diveMove-1.6.0/diveMove/man/rmixexp.Rd |only diveMove-1.6.0/diveMove/man/rqPlot.Rd | 103 - diveMove-1.6.0/diveMove/man/timeBudget.Rd |only 72 files changed, 3411 insertions(+), 1987 deletions(-)
Title: An R Port of the 'ImageJ' Plugin 'Auto Threshold'
Description: Algorithms for automatically finding appropriate
thresholds for numerical data, with special functions for thresholding
images. Provides the 'ImageJ' 'Auto Threshold' plugin functionality to
R users. See <https://imagej.net/Auto_Threshold> and Landini et al.
(2017) <DOI:10.1111/jmi.12474>.
Author: Rory Nolan [aut, cre, trl] (<https://orcid.org/0000-0002-5239-4043>),
Luis Alvarez [ctb] (<https://orcid.org/0000-0003-1316-1906>),
Sergi Padilla-Parra [ctb, ths]
(<https://orcid.org/0000-0002-8010-9481>),
Gabriel Landini [ctb, cph] (<https://orcid.org/0000-0002-9689-0989>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between autothresholdr versions 1.3.10 dated 2021-04-19 and 1.3.11 dated 2021-05-12
autothresholdr-1.3.10/autothresholdr/man/arr_mask.Rd |only autothresholdr-1.3.11/autothresholdr/DESCRIPTION | 6 - autothresholdr-1.3.11/autothresholdr/MD5 | 27 ++--- autothresholdr-1.3.11/autothresholdr/NAMESPACE | 2 autothresholdr-1.3.11/autothresholdr/NEWS.md | 6 + autothresholdr-1.3.11/autothresholdr/R/class_constructors.R | 24 +++- autothresholdr-1.3.11/autothresholdr/R/thresh.R | 21 +--- autothresholdr-1.3.11/autothresholdr/R/utils.R | 10 - autothresholdr-1.3.11/autothresholdr/inst/doc/finding-thresholds.html | 52 +++++----- autothresholdr-1.3.11/autothresholdr/inst/doc/thresholding-image-stacks.html | 4 autothresholdr-1.3.11/autothresholdr/inst/doc/thresholding-images.html | 10 - autothresholdr-1.3.11/autothresholdr/man/auto_thresh.Rd | 2 autothresholdr-1.3.11/autothresholdr/man/masked_arr.Rd |only autothresholdr-1.3.11/autothresholdr/tests/testthat/test-class-constructors.R |only autothresholdr-1.3.11/autothresholdr/tests/testthat/test_thresh.R | 8 - autothresholdr-1.3.11/autothresholdr/tests/testthat/test_utils.R | 7 + 16 files changed, 99 insertions(+), 80 deletions(-)
More information about autothresholdr at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-28 0.3.5
2020-12-16 0.3.2
2020-11-05 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-05-11 0.2.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-30 1.0.0
Title: Mass Spectrometry Metabolomics Feature Clustering and
Interpretation
Description: A feature clustering algorithm for non-targeted mass spectrometric metabolomics data. This method is compatible with gas and liquid chromatography coupled mass spectrometry, including indiscriminant tandem mass spectrometry <DOI: 10.1021/ac501530d> data.
Author: Corey D. Broeckling, Fayyaz Afsar, Steffan Neumann, Asa Ben-Hur, Jessica Prenni.
Maintainer: "Broeckling,Corey" <Corey.Broeckling@ColoState.EDU>
Diff between RAMClustR versions 1.2.0 dated 2021-04-22 and 1.2.1 dated 2021-05-12
ChangeLog | 3 +++ DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/annotation.summary.R | 32 +++++++++++++++++++++++++++++++- R/rc.calibrate.ri.R | 8 ++++---- R/rc.cmpd.get.pubchem.R | 43 ++++++++++++++++++++++++++++++++++--------- inst/doc/RAMClustR.html | 4 ++-- man/rc.cmpd.get.pubchem.Rd | 2 +- 8 files changed, 86 insertions(+), 28 deletions(-)
Title: Fitting Finite Mixture of Scale Mixture of Skew-Normal
Distributions
Description: Functions to fit finite mixture of scale mixture of skew-normal (FM-SMSN) distributions, details in Prates, Lachos and Cabral (2013) <doi: 10.18637/jss.v054.i12>, Cabral, Lachos and Prates (2012) <doi:10.1016/j.csda.2011.06.026> and Basso, Lachos, Cabral and Ghosh (2010) <doi:10.1016/j.csda.2009.09.031>.
Author: Marcos Prates [aut, cre, trl],
Victor Lachos [aut],
Celso Cabral [aut]
Maintainer: Marcos Prates <marcosop@est.ufmg.br>
Diff between mixsmsn versions 1.1-8 dated 2020-10-08 and 1.1-9 dated 2021-05-12
ChangeLog | 4 +++ DESCRIPTION | 8 +++--- MD5 | 6 ++-- R/mixsmsn.R | 73 +++++++++++++++++++++++++++++++++++++++++------------------- 4 files changed, 61 insertions(+), 30 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-27 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-28 1.4.87
Title: Regression-Based Causal Mediation Analysis with an Interaction
Term
Description: 'R' implementation of the regression-based causal mediation analysis with a treatment-mediator interaction term, as originally implemented in the 'SAS' macro by Valeri and VanderWeele (2013) <doi:10.1037/a0031034> and Valeri and VanderWeele (2015) <doi:10.1097/EDE.0000000000000253>. Linear and logistic models are supported for the mediator model. Linear, logistic, loglinear, Poisson, negative binomial, Cox, and accelerated failure time (exponential and Weibull) models are supported for the outcome model.
Author: Kazuki Yoshida [cre, aut] (<https://orcid.org/0000-0002-2030-3549>),
Yi Li [ctb, aut] (<https://orcid.org/0000-0002-9359-210X>),
Maya Mathur [ctb] (<https://orcid.org/0000-0001-6698-2607>)
Maintainer: Kazuki Yoshida <kazukiyoshida@mail.harvard.edu>
Diff between regmedint versions 0.2.0 dated 2020-11-16 and 0.2.1 dated 2021-05-12
DESCRIPTION | 10 - MD5 | 38 ++--- NEWS.md | 5 build/vignette.rds |binary inst/doc/vig_01_introduction.R | 2 inst/doc/vig_01_introduction.Rmd | 2 inst/doc/vig_01_introduction.html | 250 +--------------------------------- inst/doc/vig_02_formulas.R | 2 inst/doc/vig_02_formulas.Rmd | 2 inst/doc/vig_02_formulas.html | 266 +++--------------------------------- inst/doc/vig_03_bootstrap.R | 2 inst/doc/vig_03_bootstrap.Rmd | 2 inst/doc/vig_03_bootstrap.html | 250 +--------------------------------- inst/doc/vig_04_mi.R | 2 inst/doc/vig_04_mi.Rmd | 2 inst/doc/vig_04_mi.html | 274 +++----------------------------------- vignettes/vig_01_introduction.Rmd | 2 vignettes/vig_02_formulas.Rmd | 2 vignettes/vig_03_bootstrap.Rmd | 2 vignettes/vig_04_mi.Rmd | 2 20 files changed, 117 insertions(+), 1000 deletions(-)
Title: Data Science for Psychologists
Description: All datasets and functions required for the examples and exercises of the book "Data Science for Psychologists" (by Hansjoerg Neth, Konstanz University, 2021), available at <https://bookdown.org/hneth/ds4psy/>. The book and course introduce principles and methods of data science to students of psychology and other biological or social sciences. The 'ds4psy' package primarily provides datasets, but also functions for data generation and manipulation (e.g., of text and time data) and graphics that are used in the book and its exercises. All functions included in 'ds4psy' are designed to be explicit and instructive, rather than efficient or elegant.
Author: Hansjoerg Neth [aut, cre] (<https://orcid.org/0000-0001-5427-3141>)
Maintainer: Hansjoerg Neth <h.neth@uni.kn>
Diff between ds4psy versions 0.6.0 dated 2021-04-08 and 0.7.0 dated 2021-05-12
ds4psy-0.6.0/ds4psy/man/is_vector.Rd |only ds4psy-0.7.0/ds4psy/DESCRIPTION | 10 ds4psy-0.7.0/ds4psy/MD5 | 99 ds4psy-0.7.0/ds4psy/NAMESPACE | 8 ds4psy-0.7.0/ds4psy/NEWS.md | 78 ds4psy-0.7.0/ds4psy/R/color_fun.R | 4 ds4psy-0.7.0/ds4psy/R/data.R | 2 ds4psy-0.7.0/ds4psy/R/data_fun.R | 34 ds4psy-0.7.0/ds4psy/R/plot_fun.R | 899 +++++++- ds4psy-0.7.0/ds4psy/R/text_fun.R | 2824 +++++++++++++++++++++------ ds4psy-0.7.0/ds4psy/R/theme_fun.R | 44 ds4psy-0.7.0/ds4psy/R/time_fun.R | 34 ds4psy-0.7.0/ds4psy/R/util_fun.R | 99 ds4psy-0.7.0/ds4psy/README.md | 10 ds4psy-0.7.0/ds4psy/build/partial.rdb |binary ds4psy-0.7.0/ds4psy/data/Trumpisms.rda |binary ds4psy-0.7.0/ds4psy/inst/CITATION | 4 ds4psy-0.7.0/ds4psy/inst/WORDLIST | 85 ds4psy-0.7.0/ds4psy/inst/doc/ds4psy.R | 2 ds4psy-0.7.0/ds4psy/inst/doc/ds4psy.Rmd | 6 ds4psy-0.7.0/ds4psy/inst/doc/ds4psy.html | 8 ds4psy-0.7.0/ds4psy/man/Umlaut.Rd | 5 ds4psy-0.7.0/ds4psy/man/capitalize.Rd | 5 ds4psy-0.7.0/ds4psy/man/caseflip.Rd | 5 ds4psy-0.7.0/ds4psy/man/cclass.Rd | 11 ds4psy-0.7.0/ds4psy/man/count_chars.Rd | 27 ds4psy-0.7.0/ds4psy/man/count_chars_words.Rd |only ds4psy-0.7.0/ds4psy/man/count_words.Rd | 21 ds4psy-0.7.0/ds4psy/man/is_equal.Rd | 2 ds4psy-0.7.0/ds4psy/man/is_vect.Rd |only ds4psy-0.7.0/ds4psy/man/is_wholenumber.Rd | 2 ds4psy-0.7.0/ds4psy/man/l33t_rul35.Rd | 5 ds4psy-0.7.0/ds4psy/man/map_text_chars.Rd |only ds4psy-0.7.0/ds4psy/man/map_text_coord.Rd |only ds4psy-0.7.0/ds4psy/man/map_text_regex.Rd |only ds4psy-0.7.0/ds4psy/man/metachar.Rd | 11 ds4psy-0.7.0/ds4psy/man/num_as_char.Rd | 2 ds4psy-0.7.0/ds4psy/man/num_as_ordinal.Rd | 2 ds4psy-0.7.0/ds4psy/man/num_equal.Rd | 2 ds4psy-0.7.0/ds4psy/man/plot_charmap.Rd |only ds4psy-0.7.0/ds4psy/man/plot_chars.Rd |only ds4psy-0.7.0/ds4psy/man/plot_fn.Rd | 2 ds4psy-0.7.0/ds4psy/man/plot_fun.Rd | 2 ds4psy-0.7.0/ds4psy/man/plot_n.Rd | 2 ds4psy-0.7.0/ds4psy/man/plot_text.Rd | 97 ds4psy-0.7.0/ds4psy/man/plot_tiles.Rd | 2 ds4psy-0.7.0/ds4psy/man/read_ascii.Rd | 42 ds4psy-0.7.0/ds4psy/man/text_to_chars.Rd |only ds4psy-0.7.0/ds4psy/man/text_to_sentences.Rd | 50 ds4psy-0.7.0/ds4psy/man/text_to_words.Rd | 17 ds4psy-0.7.0/ds4psy/man/theme_clean.Rd | 2 ds4psy-0.7.0/ds4psy/man/theme_ds4psy.Rd | 2 ds4psy-0.7.0/ds4psy/man/theme_empty.Rd | 16 ds4psy-0.7.0/ds4psy/man/transl33t.Rd | 5 ds4psy-0.7.0/ds4psy/vignettes/ds4psy.Rmd | 6 55 files changed, 3585 insertions(+), 1010 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-27 1.0.1
2020-11-14 1.0.0