Title: Analysis and Simulation of Environmental DNA Experiments
Description: Provides a modeling framework for the design and analysis of experiments collecting environmental DNA.
Author: Matt Espe [aut, cre],
Myfanwy Johnston [aut]
Maintainer: Matt Espe <mespe@ucdavis.edu>
Diff between artemis versions 1.0.5 dated 2021-05-10 and 1.0.7 dated 2021-06-14
artemis-1.0.5/artemis/inst/doc/artemis-installation-guide.R |only artemis-1.0.5/artemis/inst/doc/artemis-installation-guide.Rmd |only artemis-1.0.5/artemis/inst/doc/artemis-installation-guide.html |only artemis-1.0.5/artemis/inst/doc/modeling_advice.Rmd |only artemis-1.0.5/artemis/inst/doc/modeling_advice.html |only artemis-1.0.5/artemis/vignettes/artemis-installation-guide.Rmd |only artemis-1.0.5/artemis/vignettes/modeling_advice.Rmd |only artemis-1.0.7/artemis/DESCRIPTION | 6 artemis-1.0.7/artemis/MD5 | 31 artemis-1.0.7/artemis/NAMESPACE | 1 artemis-1.0.7/artemis/R/artemis-package.R | 2 artemis-1.0.7/artemis/README.md | 37 artemis-1.0.7/artemis/build/vignette.rds |binary artemis-1.0.7/artemis/inst/doc/artemis-overview.html | 559 +++++--- artemis-1.0.7/artemis/inst/doc/modeling.Rmd | 19 artemis-1.0.7/artemis/inst/doc/modeling.html | 518 +++++--- artemis-1.0.7/artemis/inst/doc/simulation.Rmd | 2 artemis-1.0.7/artemis/inst/doc/simulation.html | 643 +++++----- artemis-1.0.7/artemis/vignettes/modeling.Rmd | 19 artemis-1.0.7/artemis/vignettes/simulation.Rmd | 2 20 files changed, 1145 insertions(+), 694 deletions(-)
Title: Read and Write 'Matlab' Files
Description: Read and write 'Matlab' MAT files from R. The 'rmatio'
package supports reading MAT version 4, MAT version 5 and MAT
compressed version 5. The 'rmatio' package can write version 5 MAT
files and version 5 files with variable compression.
Author: Stefan Widgren [aut, cre] (Author of the R interface to the C-library
matio),
Christopher Hulbert [aut] (Author of the C-library matio,
http://sourceforge.net/projects/matio/)
Maintainer: Stefan Widgren <stefan.widgren@gmail.com>
Diff between rmatio versions 0.14.0 dated 2019-03-18 and 0.15.0 dated 2021-06-14
rmatio-0.14.0/rmatio/NEWS |only rmatio-0.14.0/rmatio/configure.win |only rmatio-0.14.0/rmatio/src/matio/config.h.win |only rmatio-0.15.0/rmatio/DESCRIPTION | 11 - rmatio-0.15.0/rmatio/MD5 | 14 - rmatio-0.15.0/rmatio/NEWS.md |only rmatio-0.15.0/rmatio/man/rmatio.Rd | 1 rmatio-0.15.0/rmatio/man/write.mat-methods.Rd | 6 rmatio-0.15.0/rmatio/src/Makevars.win | 21 -- rmatio-0.15.0/rmatio/src/matio/config.h | 201 +++++--------------------- 10 files changed, 60 insertions(+), 194 deletions(-)
Title: Plotting for Bayesian Models
Description: Plotting functions for posterior analysis, MCMC diagnostics,
prior and posterior predictive checks, and other visualizations
to support the applied Bayesian workflow advocated in
Gabry, Simpson, Vehtari, Betancourt, and Gelman (2019) <doi:10.1111/rssa.12378>.
The package is designed not only to provide convenient functionality
for users, but also a common set of functions that can be easily used by
developers working on a variety of R packages for Bayesian modeling,
particularly (but not exclusively) packages interfacing with 'Stan'.
Author: Jonah Gabry [aut, cre],
Tristan Mahr [aut],
Paul-Christian Bürkner [ctb],
Martin Modrák [ctb],
Malcolm Barrett [ctb],
Frank Weber [ctb],
Eduardo Coronado Sroka [ctb],
Aki Vehtari [ctb]
Maintainer: Jonah Gabry <jsg2201@columbia.edu>
Diff between bayesplot versions 1.8.0 dated 2021-01-10 and 1.8.1 dated 2021-06-14
DESCRIPTION | 9 MD5 | 34 +- NEWS.md | 9 R/ppc-intervals.R | 33 +- build/vignette.rds |binary inst/doc/graphical-ppcs.html | 235 ++++++++--------- inst/doc/plotting-mcmc-draws.R | 22 - inst/doc/plotting-mcmc-draws.Rmd | 50 +-- inst/doc/plotting-mcmc-draws.html | 212 ++++++++-------- inst/doc/visual-mcmc-diagnostics.R | 16 - inst/doc/visual-mcmc-diagnostics.Rmd | 36 +- inst/doc/visual-mcmc-diagnostics.html | 421 +++++++++++++++----------------- man/PPC-intervals.Rd | 9 tests/testthat/data-for-mcmc-tests.R | 2 tests/testthat/test-ppc-distributions.R | 2 tests/testthat/test-ppc-intervals.R | 36 ++ vignettes/plotting-mcmc-draws.Rmd | 50 +-- vignettes/visual-mcmc-diagnostics.Rmd | 36 +- 18 files changed, 633 insertions(+), 579 deletions(-)
Title: Circular Mixed Effect Mixture Models of Animal Activity Patterns
Description: Bayesian parametric generalized circular mixed effect mixture models (GCMMs) for estimating animal activity patterns from camera trap data and other nested data structures using 'JAGS', including automatic Bayesian k-cluster selection and random circular intercepts for nested data. The GCMM function automatically selects the number of components for the mixture model (supporting up to 4 mixture components) based on a Bayesian linear finite normal mixture model and fits a Bayesian parametric circular mixed effect mixture model with one or two random effects as random circular intercepts with a a von Mises or wrapped Cauchy distribution. Provides graphs of the combined mixture model or separate mixture components. Functionality is provided to allow quantitative comparisons between model parameters. See Campbell et al. (in press) It's time to expand our analyses of animal activity; Campbell et al. (in press) Temporal and microspatial niche partitioning; Campbell et al. (in press) A novel approach to comparing animal activity patterns. News, updates, and tutorials will be available on www.atlasgoldenwolf.org/stats and www.github.com/LizADCampbell .
Author: Liz AD Campbell [aut, cre] (<https://orcid.org/0000-0002-8302-7430>)
Maintainer: Liz AD Campbell <liz.campbell@zoo.ox.ac.uk>
Diff between activityGCMM versions 1.0.0 dated 2021-03-15 and 1.1.1 dated 2021-06-14
activityGCMM-1.0.0/activityGCMM/R/globals.R |only activityGCMM-1.0.0/activityGCMM/R/variables.R |only activityGCMM-1.0.0/activityGCMM/man/Variables.Rd |only activityGCMM-1.1.1/activityGCMM/DESCRIPTION | 9 activityGCMM-1.1.1/activityGCMM/MD5 | 67 ++ activityGCMM-1.1.1/activityGCMM/NAMESPACE | 39 + activityGCMM-1.1.1/activityGCMM/R/APDfunctions.R |only activityGCMM-1.1.1/activityGCMM/R/ActivityProbabilityFunctions.R |only activityGCMM-1.1.1/activityGCMM/R/GCMM.R | 268 +++++----- activityGCMM-1.1.1/activityGCMM/R/GCMMplots.R |only activityGCMM-1.1.1/activityGCMM/R/ModelFitFunctions.R |only activityGCMM-1.1.1/activityGCMM/R/REfunctions.R |only activityGCMM-1.1.1/activityGCMM/R/compareGCMM.R |only activityGCMM-1.1.1/activityGCMM/R/data.R | 6 activityGCMM-1.1.1/activityGCMM/R/supportfunctions.R |only activityGCMM-1.1.1/activityGCMM/R/uncertaintyfunctions.R |only activityGCMM-1.1.1/activityGCMM/man/APDatPeak.Rd |only activityGCMM-1.1.1/activityGCMM/man/APDpointplot.Rd |only activityGCMM-1.1.1/activityGCMM/man/GCMM.Rd | 34 - activityGCMM-1.1.1/activityGCMM/man/GCMMpdens.Rd |only activityGCMM-1.1.1/activityGCMM/man/GCMMpeaksplot.Rd |only activityGCMM-1.1.1/activityGCMM/man/GCMMppc.Rd |only activityGCMM-1.1.1/activityGCMM/man/GCMMprob.Rd |only activityGCMM-1.1.1/activityGCMM/man/GCMMsims.Rd |only activityGCMM-1.1.1/activityGCMM/man/GCMMsimsparams.Rd |only activityGCMM-1.1.1/activityGCMM/man/HDI.Rd |only activityGCMM-1.1.1/activityGCMM/man/HPDoverlap.Rd |only activityGCMM-1.1.1/activityGCMM/man/PDS.Rd |only activityGCMM-1.1.1/activityGCMM/man/activityHPD.Rd |only activityGCMM-1.1.1/activityGCMM/man/activityHPDmean.Rd |only activityGCMM-1.1.1/activityGCMM/man/calcAPD.Rd |only activityGCMM-1.1.1/activityGCMM/man/calcprop.Rd |only activityGCMM-1.1.1/activityGCMM/man/circaxis.Rd |only activityGCMM-1.1.1/activityGCMM/man/circplotHPD.Rd |only activityGCMM-1.1.1/activityGCMM/man/circplotREs.Rd |only activityGCMM-1.1.1/activityGCMM/man/circplotmeans.Rd |only activityGCMM-1.1.1/activityGCMM/man/combineMCMC.Rd |only activityGCMM-1.1.1/activityGCMM/man/comboplot.Rd |only activityGCMM-1.1.1/activityGCMM/man/compareGCMM.Rd |only activityGCMM-1.1.1/activityGCMM/man/compareGCMMfit.Rd |only activityGCMM-1.1.1/activityGCMM/man/componentsplot.Rd | 28 - activityGCMM-1.1.1/activityGCMM/man/convertRad.Rd |only activityGCMM-1.1.1/activityGCMM/man/extractparam.Rd |only activityGCMM-1.1.1/activityGCMM/man/humanssample.Rd | 2 activityGCMM-1.1.1/activityGCMM/man/mixtureplot.Rd |only activityGCMM-1.1.1/activityGCMM/man/mode.Rd |only activityGCMM-1.1.1/activityGCMM/man/multiplot.Rd |only activityGCMM-1.1.1/activityGCMM/man/peaksPDplot.Rd |only activityGCMM-1.1.1/activityGCMM/man/plotGCMMsamples.Rd |only activityGCMM-1.1.1/activityGCMM/man/plotREs.Rd |only activityGCMM-1.1.1/activityGCMM/man/plotactivityHPD.Rd |only activityGCMM-1.1.1/activityGCMM/man/posteriorhistplot.Rd |only activityGCMM-1.1.1/activityGCMM/man/progress.Rd |only activityGCMM-1.1.1/activityGCMM/man/redfoxsample.Rd | 2 activityGCMM-1.1.1/activityGCMM/man/samplerows.Rd |only activityGCMM-1.1.1/activityGCMM/man/sumCircResids.Rd |only activityGCMM-1.1.1/activityGCMM/man/updateGCMM.Rd | 32 + activityGCMM-1.1.1/activityGCMM/man/xaxis.Rd |only activityGCMM-1.1.1/activityGCMM/man/yMax.Rd |only 59 files changed, 327 insertions(+), 160 deletions(-)
Title: Steve's Miscellaneous Functions
Description: These are miscellaneous functions that I find useful for my research and teaching.
The contents include themes for plots, functions for simulating
quantities of interest from regression models, functions for simulating various
forms of fake data for instructional/research purposes, and many more. All told, the functions
provided here are broadly useful for data organization, data presentation, data recoding,
and data simulation.
Author: Steve Miller [aut, cre],
Ben Bolker [ctb],
Dave Armstrong [ctb],
John Fox [ctb],
Winston Chang [ctb],
Brian Ripley [ctb],
Bill Venables [ctb],
Pascal van Kooten [ctb],
Gerko Vink [ctb],
Paul Williamson [ctb]
Maintainer: Steve Miller <steven.v.miller@gmail.com>
Diff between stevemisc versions 1.0.0 dated 2021-04-19 and 1.1.0 dated 2021-06-14
DESCRIPTION | 11 +++++------ MD5 | 24 +++++++++++++----------- NAMESPACE | 6 ++++++ NEWS.md | 7 +++++++ R/corvectors.R | 6 ++++-- R/normal_dist.R | 2 +- R/ps_btscs.R |only R/rbnorm.R | 8 +++++--- R/sbtscs.R | 2 +- README.md | 48 ++++++++++++++++++++++++++++++++++-------------- man/corvectors.Rd | 6 ++++-- man/normal_dist.Rd | 2 +- man/ps_btscs.Rd |only man/rbnorm.Rd | 8 +++++--- 14 files changed, 86 insertions(+), 44 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-05-18 1.0
Title: Tabulate Descriptive Statistics in Multiple Formats
Description: Creates a table of descriptive statistics
for factor and numeric columns in a data frame. Displays
these by groups, if any. Highly customizable, with support
for 'html' and 'pdf' provided by 'kableExtra'. Respects
original column order, column labels, and factor level order.
See ?tablet.data.frame and vignettes.
Author: Tim Bergsma
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between tablet versions 0.2.9 dated 2021-05-23 and 0.3.1 dated 2021-06-14
DESCRIPTION | 9 MD5 | 19 - NAMESPACE | 4 R/mesa.R | 8 R/tablet.R | 2 inst/doc/tablet-introduction-html.html | 4 inst/doc/tablet-introduction-pdf.pdf |binary inst/shiny-examples/mesa/app.R | 383 +++++++++++++++++++++++++----- inst/shiny-examples/mesa/data/mtcars.conf | 5 inst/shiny-examples/mesa/www/T-00-00.pdf |only man/mesa.Rd | 6 11 files changed, 368 insertions(+), 72 deletions(-)
Title: Colour Schemes for Scientific Data Visualization
Description: Colour schemes ready for each type of data (qualitative,
diverging or sequential), with colours that are distinct for all
people, including colour-blind readers. This package provides an
implementation of Paul Tol (2018) and Fabio Crameri (2018) <doi:
10.5194/gmd-11-2541-2018> colour schemes for use with 'graphics' or
'ggplot2'. It provides tools to simulate colour-blindness and to test
how well the colours of any palette are identifiable. Several
scientific thematic schemes (geologic timescale, land cover, FAO
soils, etc.) are also implemented.
Author: Nicolas Frerebeau [aut, cre] (<https://orcid.org/0000-0001-5759-4944>),
Brice Lebrun [ctb] (<https://orcid.org/0000-0001-7503-8685>),
Vincent Arel-Bundock [ctb] (<https://orcid.org/0000-0003-2042-7063>)
Maintainer: Nicolas Frerebeau <nicolas.frerebeau@u-bordeaux-montaigne.fr>
Diff between khroma versions 1.5.0 dated 2021-04-23 and 1.6.0 dated 2021-06-14
DESCRIPTION | 17 ++++---- MD5 | 38 ++++++++++-------- NAMESPACE | 10 ---- NEWS.md |only R/colour.R | 30 ++++++++++++++ R/compare.R | 1 R/ggplot2.R | 16 +++++-- R/khroma-package.R | 22 +++++++--- README.md | 81 ++++++++++++++++++++++++++++++++++++++-- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 6 +- inst/doc/crameri.html | 5 +- inst/doc/tol.html | 7 +-- inst/examples/ex-info.R |only man/colour.Rd | 4 + man/info.Rd |only man/khroma-package.Rd | 7 +-- tests/testthat/_snaps/colour.md |only tests/testthat/test-colour.R | 10 +++- tests/testthat/test-compare.R | 2 vignettes/bibliography.bib | 3 - 22 files changed, 195 insertions(+), 64 deletions(-)
Title: Colocalisation Tests of Two Genetic Traits
Description: Performs the colocalisation tests described in
Giambartolomei et al (2013) <doi:10.1371/journal.pgen.1004383>,
Wallace (2020) <doi:10.1371/journal.pgen.1008720>,
Wallace (2021) <doi:10.1101/2021.02.23.432421>.
Author: Chris Wallace [aut, cre],
Claudia Giambartolomei [aut],
Vincent Plagnol [ctb]
Maintainer: Chris Wallace <cew54@cam.ac.uk>
Diff between coloc versions 3.2-1 dated 2019-05-17 and 5.1.0 dated 2021-06-14
coloc-3.2-1/coloc/R/AllClasses.R |only coloc-3.2-1/coloc/R/AllGenerics.R |only coloc-3.2-1/coloc/R/AllMethods.R |only coloc-3.2-1/coloc/R/bma.R |only coloc-3.2-1/coloc/R/coloc.combine.R |only coloc-3.2-1/coloc/R/coloc.test.R |only coloc-3.2-1/coloc/R/pcs.R |only coloc-3.2-1/coloc/inst/doc/vignette.R |only coloc-3.2-1/coloc/inst/doc/vignette.Rmd |only coloc-3.2-1/coloc/inst/doc/vignette.html |only coloc-3.2-1/coloc/man/bf-methods.Rd |only coloc-3.2-1/coloc/man/coloc-class.Rd |only coloc-3.2-1/coloc/man/coloc.abf.datasets.Rd |only coloc-3.2-1/coloc/man/coloc.abf.snpStats.Rd |only coloc-3.2-1/coloc/man/coloc.bma.Rd |only coloc-3.2-1/coloc/man/coloc.test.Rd |only coloc-3.2-1/coloc/man/coloc.test.summary.Rd |only coloc-3.2-1/coloc/man/colocABF-class.Rd |only coloc-3.2-1/coloc/man/colocPCs-class.Rd |only coloc-3.2-1/coloc/man/eta.Rd |only coloc-3.2-1/coloc/man/fillin.Rd |only coloc-3.2-1/coloc/man/pcs.model.Rd |only coloc-3.2-1/coloc/man/pcs.prepare.Rd |only coloc-3.2-1/coloc/vignettes/vignette.Rmd |only coloc-5.1.0/coloc/DESCRIPTION | 25 +- coloc-5.1.0/coloc/MD5 | 110 ++++++---- coloc-5.1.0/coloc/NAMESPACE | 58 +++-- coloc-5.1.0/coloc/NEWS.md | 34 +++ coloc-5.1.0/coloc/R/check.R |only coloc-5.1.0/coloc/R/claudia.R | 195 +++--------------- coloc-5.1.0/coloc/R/coloc-package.R | 65 ------ coloc-5.1.0/coloc/R/plot.R | 242 +++++++++++------------ coloc-5.1.0/coloc/R/sensitivity.R |only coloc-5.1.0/coloc/R/split.R |only coloc-5.1.0/coloc/R/susie.R |only coloc-5.1.0/coloc/R/testdata.R |only coloc-5.1.0/coloc/R/zzz.R |only coloc-5.1.0/coloc/README.md | 77 ++++++- coloc-5.1.0/coloc/build/vignette.rds |binary coloc-5.1.0/coloc/data |only coloc-5.1.0/coloc/inst/CITATION | 49 +--- coloc-5.1.0/coloc/inst/doc/a01_intro.Rmd |only coloc-5.1.0/coloc/inst/doc/a01_intro.html |only coloc-5.1.0/coloc/inst/doc/a02_data.R |only coloc-5.1.0/coloc/inst/doc/a02_data.Rmd |only coloc-5.1.0/coloc/inst/doc/a02_data.html |only coloc-5.1.0/coloc/inst/doc/a03_enumeration.R |only coloc-5.1.0/coloc/inst/doc/a03_enumeration.Rmd |only coloc-5.1.0/coloc/inst/doc/a03_enumeration.html |only coloc-5.1.0/coloc/inst/doc/a04_sensitivity.R |only coloc-5.1.0/coloc/inst/doc/a04_sensitivity.Rmd |only coloc-5.1.0/coloc/inst/doc/a04_sensitivity.html |only coloc-5.1.0/coloc/inst/doc/a05_conditioning.R |only coloc-5.1.0/coloc/inst/doc/a05_conditioning.Rmd |only coloc-5.1.0/coloc/inst/doc/a05_conditioning.html |only coloc-5.1.0/coloc/inst/doc/a06_SuSiE.R |only coloc-5.1.0/coloc/inst/doc/a06_SuSiE.Rmd |only coloc-5.1.0/coloc/inst/doc/a06_SuSiE.html |only coloc-5.1.0/coloc/man/alpha_to_logbf.Rd |only coloc-5.1.0/coloc/man/bin2lin.Rd |only coloc-5.1.0/coloc/man/check_alignment.Rd |only coloc-5.1.0/coloc/man/check_dataset.Rd |only coloc-5.1.0/coloc/man/coloc-package.Rd | 24 -- coloc-5.1.0/coloc/man/coloc.abf.Rd | 40 --- coloc-5.1.0/coloc/man/coloc.bf_bf.Rd |only coloc-5.1.0/coloc/man/coloc.detail.Rd |only coloc-5.1.0/coloc/man/coloc.process.Rd |only coloc-5.1.0/coloc/man/coloc.signals.Rd |only coloc-5.1.0/coloc/man/coloc.susie.Rd |only coloc-5.1.0/coloc/man/coloc.susie_bf.Rd |only coloc-5.1.0/coloc/man/coloc_test_data.Rd |only coloc-5.1.0/coloc/man/est_cond.Rd |only coloc-5.1.0/coloc/man/estgeno1.Rd |only coloc-5.1.0/coloc/man/figures |only coloc-5.1.0/coloc/man/find.best.signal.Rd |only coloc-5.1.0/coloc/man/finemap.abf.Rd | 35 --- coloc-5.1.0/coloc/man/finemap.signals.Rd |only coloc-5.1.0/coloc/man/logbf_to_pp.Rd |only coloc-5.1.0/coloc/man/map_cond.Rd |only coloc-5.1.0/coloc/man/map_mask.Rd |only coloc-5.1.0/coloc/man/plot-methods.Rd | 60 ----- coloc-5.1.0/coloc/man/plot_dataset.Rd |only coloc-5.1.0/coloc/man/print-methods.Rd |only coloc-5.1.0/coloc/man/runsusie.Rd |only coloc-5.1.0/coloc/man/sdY.est.Rd | 2 coloc-5.1.0/coloc/man/sensitivity.Rd |only coloc-5.1.0/coloc/tests/testthat/test-abf.R | 16 - coloc-5.1.0/coloc/tests/testthat/test-susie.R |only coloc-5.1.0/coloc/vignettes/a01_intro.Rmd |only coloc-5.1.0/coloc/vignettes/a02_data.Rmd |only coloc-5.1.0/coloc/vignettes/a03_enumeration.Rmd |only coloc-5.1.0/coloc/vignettes/a04_sensitivity.Rmd |only coloc-5.1.0/coloc/vignettes/a05_conditioning.Rmd |only coloc-5.1.0/coloc/vignettes/a06_SuSiE.Rmd |only 94 files changed, 429 insertions(+), 603 deletions(-)
Title: Read and Write Rectangular Text Data Quickly
Description: The goal of 'vroom' is to read and write data (like
'csv', 'tsv' and 'fwf') quickly. When reading it uses a quick initial
indexing step, then reads the values lazily , so only the data you
actually use needs to be read. The writer formats the data in
parallel and writes to disk asynchronously from formatting.
Author: Jim Hester [aut, cre] (<https://orcid.org/0000-0002-2739-7082>),
Hadley Wickham [aut] (<https://orcid.org/0000-0003-4757-117X>),
https://github.com/mandreyel/ [cph] (mio library),
Jukka Jylänki [cph] (grisu3 implementation),
Mikkel Jørgensen [cph] (grisu3 implementation),
RStudio [cph, fnd]
Maintainer: Jim Hester <jim.hester@rstudio.com>
Diff between vroom versions 1.4.0 dated 2021-02-01 and 1.5.0 dated 2021-06-14
vroom-1.4.0/vroom/src/localtime.c |only vroom-1.4.0/vroom/src/localtime.h |only vroom-1.5.0/vroom/DESCRIPTION | 32 vroom-1.5.0/vroom/LICENSE |only vroom-1.5.0/vroom/MD5 | 184 +-- vroom-1.5.0/vroom/NAMESPACE | 13 vroom-1.5.0/vroom/NEWS.md | 74 + vroom-1.5.0/vroom/R/col_types.R | 134 +- vroom-1.5.0/vroom/R/cpp11.R | 42 vroom-1.5.0/vroom/R/locale.R | 20 vroom-1.5.0/vroom/R/path.R | 44 vroom-1.5.0/vroom/R/problems.R | 17 vroom-1.5.0/vroom/R/utils.R | 29 vroom-1.5.0/vroom/R/vroom.R | 56 - vroom-1.5.0/vroom/R/vroom_fwf.R | 17 vroom-1.5.0/vroom/R/vroom_lines.R | 13 vroom-1.5.0/vroom/R/vroom_write.R | 36 vroom-1.5.0/vroom/R/zzz.R | 5 vroom-1.5.0/vroom/README.md | 130 +- vroom-1.5.0/vroom/build/vignette.rds |binary vroom-1.5.0/vroom/build/vroom.pdf |binary vroom-1.5.0/vroom/inst/COPYRIGHTS | 45 vroom-1.5.0/vroom/inst/WORDLIST | 10 vroom-1.5.0/vroom/inst/bench/all_character-long.tsv | 192 +-- vroom-1.5.0/vroom/inst/bench/all_character-wide.tsv | 192 +-- vroom-1.5.0/vroom/inst/bench/all_numeric-long.tsv | 224 ++-- vroom-1.5.0/vroom/inst/bench/all_numeric-wide.tsv | 224 ++-- vroom-1.5.0/vroom/inst/bench/fwf.tsv | 160 +-- vroom-1.5.0/vroom/inst/bench/session_info.tsv | 10 vroom-1.5.0/vroom/inst/bench/taxi.tsv | 192 +-- vroom-1.5.0/vroom/inst/bench/taxi_multiple.tsv | 160 +-- vroom-1.5.0/vroom/inst/bench/taxi_writing.tsv | 120 +- vroom-1.5.0/vroom/inst/doc/benchmarks.R | 8 vroom-1.5.0/vroom/inst/doc/benchmarks.Rmd | 8 vroom-1.5.0/vroom/inst/doc/benchmarks.html | 956 +++++++----------- vroom-1.5.0/vroom/inst/doc/vroom.html | 821 ++++++--------- vroom-1.5.0/vroom/man/gen_tbl.Rd | 7 vroom-1.5.0/vroom/man/problems.Rd | 6 vroom-1.5.0/vroom/man/vroom-package.Rd | 1 vroom-1.5.0/vroom/man/vroom.Rd | 55 - vroom-1.5.0/vroom/man/vroom_fwf.Rd | 73 - vroom-1.5.0/vroom/man/vroom_lines.Rd | 21 vroom-1.5.0/vroom/man/vroom_write.Rd | 10 vroom-1.5.0/vroom/man/vroom_write_lines.Rd | 15 vroom-1.5.0/vroom/src/DateTime.h | 122 -- vroom-1.5.0/vroom/src/DateTimeParser.h | 50 vroom-1.5.0/vroom/src/Iconv.cpp | 12 vroom-1.5.0/vroom/src/LocaleInfo.cpp | 16 vroom-1.5.0/vroom/src/LocaleInfo.h | 4 vroom-1.5.0/vroom/src/Makevars | 2 vroom-1.5.0/vroom/src/altrep.cc | 2 vroom-1.5.0/vroom/src/collectors.h | 23 vroom-1.5.0/vroom/src/cpp11.cpp | 71 - vroom-1.5.0/vroom/src/delimited_index.cc | 129 +- vroom-1.5.0/vroom/src/delimited_index.h | 292 ++++- vroom-1.5.0/vroom/src/delimited_index_connection.cc | 41 vroom-1.5.0/vroom/src/delimited_index_connection.h | 1 vroom-1.5.0/vroom/src/fixed_width_index.h | 78 - vroom-1.5.0/vroom/src/fixed_width_index_connection.cc | 23 vroom-1.5.0/vroom/src/fixed_width_index_connection.h | 1 vroom-1.5.0/vroom/src/guess_type.cc | 46 vroom-1.5.0/vroom/src/iconv_file.cc |only vroom-1.5.0/vroom/src/index.h | 24 vroom-1.5.0/vroom/src/index_collection.cc | 50 vroom-1.5.0/vroom/src/index_collection.h | 47 vroom-1.5.0/vroom/src/r_utils.h | 14 vroom-1.5.0/vroom/src/utils.h | 146 ++ vroom-1.5.0/vroom/src/vroom.cc | 24 vroom-1.5.0/vroom/src/vroom_chr.h | 5 vroom-1.5.0/vroom/src/vroom_dbl.cc | 25 vroom-1.5.0/vroom/src/vroom_dbl.h | 6 vroom-1.5.0/vroom/src/vroom_dttm.cc | 36 vroom-1.5.0/vroom/src/vroom_errors.h | 62 - vroom-1.5.0/vroom/src/vroom_fct.cc | 10 vroom-1.5.0/vroom/src/vroom_fct.h | 2 vroom-1.5.0/vroom/src/vroom_fwf.cc | 40 vroom-1.5.0/vroom/src/vroom_lgl.h | 4 vroom-1.5.0/vroom/src/vroom_num.cc | 24 vroom-1.5.0/vroom/src/vroom_vec.h | 4 vroom-1.5.0/vroom/src/vroom_write.cc | 30 vroom-1.5.0/vroom/tests/testthat/helper.R | 24 vroom-1.5.0/vroom/tests/testthat/test-big-int.R | 18 vroom-1.5.0/vroom/tests/testthat/test-chr.R | 2 vroom-1.5.0/vroom/tests/testthat/test-connection.R | 24 vroom-1.5.0/vroom/tests/testthat/test-datetime.R | 108 +- vroom-1.5.0/vroom/tests/testthat/test-dbl.R | 13 vroom-1.5.0/vroom/tests/testthat/test-factor.R | 43 vroom-1.5.0/vroom/tests/testthat/test-int.R | 18 vroom-1.5.0/vroom/tests/testthat/test-num.R | 4 vroom-1.5.0/vroom/tests/testthat/test-problems.R | 54 - vroom-1.5.0/vroom/tests/testthat/test-vroom.R | 217 +++- vroom-1.5.0/vroom/tests/testthat/test-vroom_fwf.R | 106 + vroom-1.5.0/vroom/tests/testthat/test-vroom_lines.R | 11 vroom-1.5.0/vroom/tests/testthat/test-vroom_write.R | 34 vroom-1.5.0/vroom/vignettes/benchmarks.Rmd | 8 95 files changed, 3586 insertions(+), 2920 deletions(-)
Title: Processing of the 'Planet NICFI' Satellite Imagery
Description: It includes functions to download and process the 'Planet NICFI' (Norway's International Climate and Forest Initiative) Satellite Imagery utilizing the Planet Mosaics API <https://developers.planet.com/docs/basemaps/reference/#tag/Basemaps-and-Mosaics>. 'GDAL' (library for raster and vector geospatial data formats) and 'aria2c' (paralleled download utility) must be installed and configured in the user's Operating System.
Author: Lampros Mouselimis [aut, cre] (<https://orcid.org/0000-0002-8024-1546>),
Planet Labs Inc [cph]
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between PlanetNICFI versions 1.0.0 dated 2021-06-10 and 1.0.1 dated 2021-06-14
DESCRIPTION | 13 ++-- MD5 | 24 ++++----- NAMESPACE | 4 + NEWS.md | 8 +++ R/nicfi_utils.R | 61 +++++++++++++++++++++-- README.md | 82 ++++++++++++++++++++++++++++++- inst/data_files/virt_rast.vrt |only inst/doc/planet_nicfi_functionality.R | 6 -- inst/doc/planet_nicfi_functionality.Rmd | 10 +-- inst/doc/planet_nicfi_functionality.html | 52 +++++++++---------- man/nicfi_crop_images.Rd | 6 -- man/proj_info_extract.Rd |only tests/testthat/test-planet_nicfi.R | 11 +++- vignettes/planet_nicfi_functionality.Rmd | 10 +-- 14 files changed, 210 insertions(+), 77 deletions(-)
Title: Programming with Big Data -- Scalable Linear Algebra Packages
Description: Utilizing scalable linear algebra packages mainly
including 'BLACS', 'PBLAS', and 'ScaLAPACK' in double precision via
'pbdMPI' based on 'ScaLAPACK' version 2.0.2.
Author: Wei-Chen Chen [aut, cre],
Drew Schmidt [aut],
George Ostrouchov [aut],
Pragneshkumar Patel [aut],
Brian Ripley [ctb] (Solaris & Mac)
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between pbdSLAP versions 0.3-0 dated 2020-02-28 and 0.3-1 dated 2021-06-14
ChangeLog | 6 ++++++ DESCRIPTION | 11 +++++------ MD5 | 22 +++++++++++----------- README.md | 2 +- inst/doc/pbdSLAP-guide.Rnw | 2 +- inst/doc/pbdSLAP-guide.pdf |binary man/00_pbdSLAP-package.Rd | 2 +- man/slap_gridinfo.Rd | 2 +- src/Makevars.in | 2 +- src/ScaLAPACK/pdlaiect.c | 18 ++++++++++++++---- vignettes/pbdSLAP-guide.Rnw | 2 +- vignettes/pbdSLAP-include/01-introduction.tex | 2 +- 12 files changed, 43 insertions(+), 28 deletions(-)
Title: Nonparametric Kernel Smoothing Methods for Mixed Data Types
Description: Nonparametric (and semiparametric) kernel methods that seamlessly handle a mix of continuous, unordered, and ordered factor data types. We would like to gratefully acknowledge support from the Natural Sciences and Engineering Research Council of Canada (NSERC, <https://www.nserc-crsng.gc.ca/>), the Social Sciences and Humanities Research Council of Canada (SSHRC, <https://www.sshrc-crsh.gc.ca/>), and the Shared Hierarchical Academic Research Computing Network (SHARCNET, <https://sharcnet.ca/>).
Author: Jeffrey S. Racine [aut, cre],
Tristen Hayfield [aut]
Maintainer: Jeffrey S. Racine <racinej@mcmaster.ca>
Diff between np versions 0.60-10 dated 2020-02-06 and 0.60-11 dated 2021-06-14
CHANGELOG | 12 ++++++++++++ DESCRIPTION | 10 +++++----- MD5 | 34 +++++++++++++++++----------------- R/npuniden.boundary.R | 4 ++-- R/zzz.R | 2 +- README.md | 6 +++--- build/vignette.rds |binary data/cps71.rda |binary inst/CITATION | 4 ++-- inst/doc/entropy_np.R | 1 - inst/doc/entropy_np.pdf |binary inst/doc/np.R | 1 - inst/doc/np.pdf |binary inst/doc/np_faq.Rnw | 18 +++++++++++++++++- inst/doc/np_faq.pdf |binary man/npuniden.boundary.Rd | 11 ++++++----- src/statmods.c | 11 +++++++++-- vignettes/np_faq.Rnw | 18 +++++++++++++++++- 18 files changed, 91 insertions(+), 41 deletions(-)
Title: Miscellaneous Functions in C++
Description: Provides utility functions that are simply, frequently used,
but may require higher performance that what can be obtained from base R.
Incidentally provides support for 'reverse geocoding', such as matching a point
with its nearest neighbour in another array. Used as a complement to package
'hutils' by sacrificing compilation or installation time for higher running
speeds. The name is a portmanteau of the author and 'Rcpp'.
Author: Hugh Parsonage [aut, cre],
Simon Urbanek [ctb] (fastmatch components)
Maintainer: Hugh Parsonage <hugh.parsonage@gmail.com>
Diff between hutilscpp versions 0.7.1 dated 2021-05-31 and 0.7.2 dated 2021-06-14
hutilscpp-0.7.1/hutilscpp/src/common.h |only hutilscpp-0.7.2/hutilscpp/DESCRIPTION | 7 hutilscpp-0.7.2/hutilscpp/MD5 | 21 hutilscpp-0.7.2/hutilscpp/NEWS.md | 5 hutilscpp-0.7.2/hutilscpp/R/fmatchp.R | 30 hutilscpp-0.7.2/hutilscpp/R/utils.R | 292 - hutilscpp-0.7.2/hutilscpp/src/Cwhich_even.c | 27 hutilscpp-0.7.2/hutilscpp/src/fastmatch_fastmatch.c | 286 - hutilscpp-0.7.2/hutilscpp/tests/testthat/test-are_even.R | 144 hutilscpp-0.7.2/hutilscpp/tests/testthat/test-bench_system_time.R | 23 hutilscpp-0.7.2/hutilscpp/tests/testthat/test-fmatch.R | 129 hutilscpp-0.7.2/hutilscpp/tests/testthat/test-which_first.R | 2577 +++++----- 12 files changed, 1799 insertions(+), 1742 deletions(-)
Title: Fit, Simulate and Diagnose Exponential-Family Models for
Networks
Description: An integrated set of tools to analyze and simulate networks based on exponential-family random graph models (ERGMs). 'ergm' is a part of the Statnet suite of packages for network analysis. See Hunter, Handcock, Butts, Goodreau, and Morris (2008) <doi:10.18637/jss.v024.i03> and Krivitsky, Hunter, Morris, and Klumb (2021) <arXiv:2106.04997>.
Author: Mark S. Handcock [aut],
David R. Hunter [aut],
Carter T. Butts [aut],
Steven M. Goodreau [aut],
Pavel N. Krivitsky [aut, cre] (<https://orcid.org/0000-0002-9101-3362>),
Martina Morris [aut],
Li Wang [ctb],
Kirk Li [ctb],
Skye Bender-deMoll [ctb],
Chad Klumb [ctb],
Michał Bojanowski [ctb],
Ben Bolker [ctb],
Christian Schmid [ctb]
Maintainer: Pavel N. Krivitsky <pavel@statnet.org>
Diff between ergm versions 3.11.0 dated 2020-10-14 and 4.0.0 dated 2021-06-14
ergm-3.11.0/ergm/R/InitErgmProposal.blockdiag.R |only ergm-3.11.0/ergm/R/ergm.MCMCse.lognormal.R |only ergm-3.11.0/ergm/R/ergm.curved.statsmatrix.R |only ergm-3.11.0/ergm/R/ergm.reviseinit.R |only ergm-3.11.0/ergm/R/ergm.sufftoprob.R |only ergm-3.11.0/ergm/R/is.durational.R |only ergm-3.11.0/ergm/R/locator.R |only ergm-3.11.0/ergm/R/pending_update_network.R |only ergm-3.11.0/ergm/data/faux.magnolia.high.withnumericattributes.RData |only ergm-3.11.0/ergm/data/faux.mesa.high.withnumericattributes.RData |only ergm-3.11.0/ergm/inst/doc/ergm.Rnw |only ergm-3.11.0/ergm/inst/include/MCMC.h |only ergm-3.11.0/ergm/inst/include/wtMCMC.h |only ergm-3.11.0/ergm/man/Getting.Started.Rd |only ergm-3.11.0/ergm/man/control.logLik.ergm.Rd |only ergm-3.11.0/ergm/man/enformulate.curved.Rd |only ergm-3.11.0/ergm/man/ergm.bounddeg.Rd |only ergm-3.11.0/ergm/man/ergm_Clist.Rd |only ergm-3.11.0/ergm/man/is.durational.Rd |only ergm-3.11.0/ergm/man/lasttoggle.Rd |only ergm-3.11.0/ergm/man/pending_update_network.Rd |only ergm-3.11.0/ergm/src/MHproposals_bipartite.h |only ergm-3.11.0/ergm/src/MHproposals_block.c |only ergm-3.11.0/ergm/src/MHproposals_block.h |only ergm-3.11.0/ergm/src/MHproposals_degree.h |only ergm-3.11.0/ergm/src/changestats_coincidence.h |only ergm-3.11.0/ergm/src/changestats_concurrentties.h |only ergm-3.11.0/ergm/src/changestats_homoproportion.h |only ergm-3.11.0/ergm/src/changestats_indices.h |only ergm-3.11.0/ergm/src/changestats_internal.h |only ergm-3.11.0/ergm/src/changestats_transitiveties.c |only ergm-3.11.0/ergm/src/changestats_transitiveties.h |only ergm-3.11.0/ergm/src/edgelist.c |only ergm-3.11.0/ergm/src/netstats.h |only ergm-3.11.0/ergm/src/wtMHproposals.h |only ergm-3.11.0/ergm/src/wtnetstats.h |only ergm-3.11.0/ergm/tests/constrain_dind.R |only ergm-3.11.0/ergm/tests/constraint_conflict.R |only ergm-3.11.0/ergm/tests/constraint_generalized.R |only ergm-3.11.0/ergm/tests/ergmMPLEtest.R |only ergm-3.11.0/ergm/tests/fix.curved.R |only ergm-3.11.0/ergm/tests/mle_offset.R |only ergm-3.11.0/ergm/tests/nodemix.R |only ergm-3.11.0/ergm/tests/scoping.R |only ergm-3.11.0/ergm/tests/stocapprox.R |only ergm-3.11.0/ergm/tests/target_offset.R |only ergm-3.11.0/ergm/tests/utils_tests.R |only ergm-3.11.0/ergm/vignettes/Network-Callback-API.html |only ergm-3.11.0/ergm/vignettes/Proposal-Lookup-API.html |only ergm-3.11.0/ergm/vignettes/Terms-API.html |only ergm-3.11.0/ergm/vignettes/ergm.Rnw |only ergm-4.0.0/ergm/BUGS | 8 ergm-4.0.0/ergm/DESCRIPTION | 99 ergm-4.0.0/ergm/LICENSE | 8 ergm-4.0.0/ergm/MD5 | 752 - ergm-4.0.0/ergm/NAMESPACE | 121 ergm-4.0.0/ergm/R/InitErgmConstraint.R | 509 - ergm-4.0.0/ergm/R/InitErgmConstraint.blockdiag.R |only ergm-4.0.0/ergm/R/InitErgmConstraint.hints.R |only ergm-4.0.0/ergm/R/InitErgmProposal.R | 223 ergm-4.0.0/ergm/R/InitErgmProposal.dyadnoise.R |only ergm-4.0.0/ergm/R/InitErgmReference.R | 35 ergm-4.0.0/ergm/R/InitErgmTerm.R | 578 - ergm-4.0.0/ergm/R/InitErgmTerm.auxnet.R |only ergm-4.0.0/ergm/R/InitErgmTerm.bipartite.R | 10 ergm-4.0.0/ergm/R/InitErgmTerm.bipartite.degree.R | 10 ergm-4.0.0/ergm/R/InitErgmTerm.blockop.R |only ergm-4.0.0/ergm/R/InitErgmTerm.coincidence.R | 10 ergm-4.0.0/ergm/R/InitErgmTerm.dgw_sp.R | 149 ergm-4.0.0/ergm/R/InitErgmTerm.extra.R | 10 ergm-4.0.0/ergm/R/InitErgmTerm.indices.R | 10 ergm-4.0.0/ergm/R/InitErgmTerm.interaction.R |only ergm-4.0.0/ergm/R/InitErgmTerm.operator.R |only ergm-4.0.0/ergm/R/InitErgmTerm.spcache.R |only ergm-4.0.0/ergm/R/InitErgmTerm.test.R | 79 ergm-4.0.0/ergm/R/InitErgmTerm.transitiveties.R | 18 ergm-4.0.0/ergm/R/InitWtErgmProposal.R | 32 ergm-4.0.0/ergm/R/InitWtErgmTerm.R | 178 ergm-4.0.0/ergm/R/InitWtErgmTerm.operator.R |only ergm-4.0.0/ergm/R/InitWtErgmTerm.test.R |only ergm-4.0.0/ergm/R/anova.ergm.R | 16 ergm-4.0.0/ergm/R/anova.ergmlist.R | 73 ergm-4.0.0/ergm/R/approx.hotelling.diff.test.R | 14 ergm-4.0.0/ergm/R/as.network.numeric.R | 10 ergm-4.0.0/ergm/R/build_term_index.R | 24 ergm-4.0.0/ergm/R/check.ErgmTerm.R | 148 ergm-4.0.0/ergm/R/control.ergm.R | 395 ergm-4.0.0/ergm/R/control.ergm.bridge.R | 77 ergm-4.0.0/ergm/R/control.gof.R | 40 ergm-4.0.0/ergm/R/control.logLik.ergm.R | 76 ergm-4.0.0/ergm/R/control.san.R | 26 ergm-4.0.0/ergm/R/control.simulate.R | 93 ergm-4.0.0/ergm/R/data.R | 86 ergm-4.0.0/ergm/R/ergm-defunct.R | 13 ergm-4.0.0/ergm/R/ergm-deprecated.R | 39 ergm-4.0.0/ergm/R/ergm-disambiguation.R | 10 ergm-4.0.0/ergm/R/ergm-internal.R |only ergm-4.0.0/ergm/R/ergm-options.R |only ergm-4.0.0/ergm/R/ergm-package.R |only ergm-4.0.0/ergm/R/ergm.CD.fixed.R | 191 ergm-4.0.0/ergm/R/ergm.Cprepare.R | 264 ergm-4.0.0/ergm/R/ergm.MCMCse.R | 123 ergm-4.0.0/ergm/R/ergm.MCMLE.R | 453 ergm-4.0.0/ergm/R/ergm.R | 411 ergm-4.0.0/ergm/R/ergm.allstats.R | 45 ergm-4.0.0/ergm/R/ergm.auxstorage.R |only ergm-4.0.0/ergm/R/ergm.bounddeg.R | 34 ergm-4.0.0/ergm/R/ergm.bridge.R | 418 ergm-4.0.0/ergm/R/ergm.design.R | 33 ergm-4.0.0/ergm/R/ergm.errors.R | 27 ergm-4.0.0/ergm/R/ergm.estimate.R | 395 ergm-4.0.0/ergm/R/ergm.eta.R | 49 ergm-4.0.0/ergm/R/ergm.etagrad.R | 23 ergm-4.0.0/ergm/R/ergm.etagradmult.R | 32 ergm-4.0.0/ergm/R/ergm.etamap.R | 133 ergm-4.0.0/ergm/R/ergm.geodistn.R | 140 ergm-4.0.0/ergm/R/ergm.getCDsample.R | 119 ergm-4.0.0/ergm/R/ergm.getMCMCsample.R | 485 ergm-4.0.0/ergm/R/ergm.getnetwork.R | 12 ergm-4.0.0/ergm/R/ergm.initialfit.R | 40 ergm-4.0.0/ergm/R/ergm.llik.R | 482 ergm-4.0.0/ergm/R/ergm.llik.obs.R | 237 ergm-4.0.0/ergm/R/ergm.logitreg.R | 124 ergm-4.0.0/ergm/R/ergm.mple.R | 121 ergm-4.0.0/ergm/R/ergm.pen.glm.R | 11 ergm-4.0.0/ergm/R/ergm.phase12.R | 103 ergm-4.0.0/ergm/R/ergm.pl.R | 116 ergm-4.0.0/ergm/R/ergm.robmon.R | 33 ergm-4.0.0/ergm/R/ergm.san.R | 303 ergm-4.0.0/ergm/R/ergm.stepping.R | 106 ergm-4.0.0/ergm/R/ergm.stocapprox.R | 60 ergm-4.0.0/ergm/R/ergm.utility.R | 85 ergm-4.0.0/ergm/R/ergmMPLE.R | 143 ergm-4.0.0/ergm/R/ergm_estfun.R | 19 ergm-4.0.0/ergm/R/ergm_model.R | 313 ergm-4.0.0/ergm/R/ergm_model.utils.R | 73 ergm-4.0.0/ergm/R/ergm_proposal.R | 357 ergm-4.0.0/ergm/R/ergm_response.R |only ergm-4.0.0/ergm/R/ergm_state.R |only ergm-4.0.0/ergm/R/ergmlhs.R |only ergm-4.0.0/ergm/R/formula.utils.R | 111 ergm-4.0.0/ergm/R/get.node.attr.R | 157 ergm-4.0.0/ergm/R/godfather.R | 148 ergm-4.0.0/ergm/R/gof.ergm.R | 519 - ergm-4.0.0/ergm/R/is.curved.R | 17 ergm-4.0.0/ergm/R/is.dyad.independent.R | 17 ergm-4.0.0/ergm/R/is.inCH.R | 193 ergm-4.0.0/ergm/R/is.valued.R |only ergm-4.0.0/ergm/R/logLik.ergm.R | 116 ergm-4.0.0/ergm/R/mcmc.diagnostics.ergm.R | 18 ergm-4.0.0/ergm/R/network.list.R | 10 ergm-4.0.0/ergm/R/network.update.R | 73 ergm-4.0.0/ergm/R/nonidentifiability.R | 48 ergm-4.0.0/ergm/R/nparam.R | 39 ergm-4.0.0/ergm/R/obs.constraints.R |only ergm-4.0.0/ergm/R/parallel.utils.R | 223 ergm-4.0.0/ergm/R/param_names.R | 22 ergm-4.0.0/ergm/R/predict.ergm.R | 33 ergm-4.0.0/ergm/R/print.ergm.R | 41 ergm-4.0.0/ergm/R/print.network.list.R | 10 ergm-4.0.0/ergm/R/print.summary.ergm.R | 62 ergm-4.0.0/ergm/R/rank_test.ergm.R |only ergm-4.0.0/ergm/R/rlebdm.R | 27 ergm-4.0.0/ergm/R/simulate.ergm.R | 364 ergm-4.0.0/ergm/R/simulate.formula.R | 9 ergm-4.0.0/ergm/R/summary.ergm.R | 84 ergm-4.0.0/ergm/R/summary.ergm_model.R | 103 ergm-4.0.0/ergm/R/summary.network.list.R | 10 ergm-4.0.0/ergm/R/summary.statistics.network.R | 62 ergm-4.0.0/ergm/R/to_ergm_Cdouble.R | 10 ergm-4.0.0/ergm/R/vcov.ergm.R | 46 ergm-4.0.0/ergm/R/wtd.median.R | 10 ergm-4.0.0/ergm/R/zzz.R | 114 ergm-4.0.0/ergm/README.md | 16 ergm-4.0.0/ergm/build/ergm.pdf |only ergm-4.0.0/ergm/build/partial.rdb |binary ergm-4.0.0/ergm/build/vignette.rds |binary ergm-4.0.0/ergm/data/cohab.RData |only ergm-4.0.0/ergm/data/datalist | 3 ergm-4.0.0/ergm/data/faux.desert.high.RData |binary ergm-4.0.0/ergm/data/faux.dixon.high.RData |binary ergm-4.0.0/ergm/inst/CITATION | 20 ergm-4.0.0/ergm/inst/NEWS.Rd | 432 ergm-4.0.0/ergm/inst/doc/Network-Callback-API.Rmd |only 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ergm-4.0.0/ergm/inst/include/ergm_BDStrat_proposals.h |only ergm-4.0.0/ergm/inst/include/ergm_MHproposal.h | 81 ergm-4.0.0/ergm/inst/include/ergm_MHproposal_bd.h |only ergm-4.0.0/ergm/inst/include/ergm_MHstorage.h |only ergm-4.0.0/ergm/inst/include/ergm_Rutil.h |only ergm-4.0.0/ergm/inst/include/ergm_block.h |only ergm-4.0.0/ergm/inst/include/ergm_changestat.h | 120 ergm-4.0.0/ergm/inst/include/ergm_changestat_auxnet.h |only ergm-4.0.0/ergm/inst/include/ergm_changestat_common.do_not_include_directly.h | 27 ergm-4.0.0/ergm/inst/include/ergm_changestat_operator.h |only ergm-4.0.0/ergm/inst/include/ergm_changestats_auxnet.h |only ergm-4.0.0/ergm/inst/include/ergm_changestats_operator.h |only ergm-4.0.0/ergm/inst/include/ergm_constants.h | 22 ergm-4.0.0/ergm/inst/include/ergm_dyad_hashmap.h |only ergm-4.0.0/ergm/inst/include/ergm_dyad_hashmap_utils.h |only ergm-4.0.0/ergm/inst/include/ergm_dyadgen.h |only ergm-4.0.0/ergm/inst/include/ergm_edgelist.h | 58 ergm-4.0.0/ergm/inst/include/ergm_edgetree.h | 51 ergm-4.0.0/ergm/inst/include/ergm_edgetree_common.do_not_include_directly.h | 20 ergm-4.0.0/ergm/inst/include/ergm_edgetree_inline.do_not_include_directly.h | 38 ergm-4.0.0/ergm/inst/include/ergm_edgetree_types.h | 8 ergm-4.0.0/ergm/inst/include/ergm_etamap.h |only ergm-4.0.0/ergm/inst/include/ergm_hash_edgelist.h |only ergm-4.0.0/ergm/inst/include/ergm_khash.h |only ergm-4.0.0/ergm/inst/include/ergm_model.h | 89 ergm-4.0.0/ergm/inst/include/ergm_nodelist.h |only ergm-4.0.0/ergm/inst/include/ergm_rlebdm.h | 24 ergm-4.0.0/ergm/inst/include/ergm_state.h |only ergm-4.0.0/ergm/inst/include/ergm_storage.h |only ergm-4.0.0/ergm/inst/include/ergm_stubs.c | 1066 -- ergm-4.0.0/ergm/inst/include/ergm_unsorted_edgelist.h |only ergm-4.0.0/ergm/inst/include/ergm_util.h |only ergm-4.0.0/ergm/inst/include/ergm_weighted_population.h |only ergm-4.0.0/ergm/inst/include/ergm_wtMHproposal.h | 38 ergm-4.0.0/ergm/inst/include/ergm_wtchangestat.h | 232 ergm-4.0.0/ergm/inst/include/ergm_wtchangestat_operator.h |only ergm-4.0.0/ergm/inst/include/ergm_wtchangestats_operator.h |only ergm-4.0.0/ergm/inst/include/ergm_wtedgetree.h | 52 ergm-4.0.0/ergm/inst/include/ergm_wtedgetree_inline.do_not_include_directly.h | 38 ergm-4.0.0/ergm/inst/include/ergm_wtmodel.h | 88 ergm-4.0.0/ergm/inst/include/ergm_wtstate.h |only ergm-4.0.0/ergm/inst/include/model.h | 9 ergm-4.0.0/ergm/inst/include/wtMHproposal.h | 9 ergm-4.0.0/ergm/inst/include/wtchangestat.h | 9 ergm-4.0.0/ergm/inst/include/wtedgetree.h | 10 ergm-4.0.0/ergm/inst/include/wtmodel.h | 9 ergm-4.0.0/ergm/man/anova.ergm.Rd | 12 ergm-4.0.0/ergm/man/call.ErgmTerm.Rd |only ergm-4.0.0/ergm/man/check.ErgmTerm.Rd | 5 ergm-4.0.0/ergm/man/cohab.Rd |only ergm-4.0.0/ergm/man/control.ergm.Rd | 349 ergm-4.0.0/ergm/man/control.ergm.bridge.Rd | 125 ergm-4.0.0/ergm/man/control.ergm.godfather.Rd | 8 ergm-4.0.0/ergm/man/control.gof.Rd | 45 ergm-4.0.0/ergm/man/control.san.Rd | 38 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ergm-4.0.0/ergm/man/logLik.ergm.Rd | 32 ergm-4.0.0/ergm/man/logLikNull.Rd | 8 ergm-4.0.0/ergm/man/nodal_attributes-API.Rd | 10 ergm-4.0.0/ergm/man/nodal_attributes.Rd | 65 ergm-4.0.0/ergm/man/rank_test.ergm.Rd |only ergm-4.0.0/ergm/man/san.Rd | 48 ergm-4.0.0/ergm/man/simulate.ergm.Rd | 142 ergm-4.0.0/ergm/man/snctrl.Rd |only ergm-4.0.0/ergm/man/summary.ergm.Rd | 8 ergm-4.0.0/ergm/man/summary.ergm_model.Rd | 21 ergm-4.0.0/ergm/man/summary.formula.Rd | 3 ergm-4.0.0/ergm/man/summary_formula.Rd | 26 ergm-4.0.0/ergm/man/symmetrize.Rd |only ergm-4.0.0/ergm/man/update.network.Rd | 55 ergm-4.0.0/ergm/man/wrap.ergm_model.Rd |only ergm-4.0.0/ergm/src/CD.c | 326 ergm-4.0.0/ergm/src/CD.c.template.do_not_include_directly.h |only ergm-4.0.0/ergm/src/CD.h | 57 ergm-4.0.0/ergm/src/CD.h.template.do_not_include_directly.h |only ergm-4.0.0/ergm/src/MCMC.c | 538 - ergm-4.0.0/ergm/src/MCMC.c.template.do_not_include_directly.h |only ergm-4.0.0/ergm/src/MCMC.h |only ergm-4.0.0/ergm/src/MCMC.h.template.do_not_include_directly.h |only ergm-4.0.0/ergm/src/MHproposal.c | 453 ergm-4.0.0/ergm/src/MHproposal_bd.c |only ergm-4.0.0/ergm/src/MHproposals.c | 946 + ergm-4.0.0/ergm/src/MHproposals.h | 44 ergm-4.0.0/ergm/src/MHproposals_bipartite.c | 11 ergm-4.0.0/ergm/src/MHproposals_degree.c | 56 ergm-4.0.0/ergm/src/MHproposals_dyadnoise.c |only ergm-4.0.0/ergm/src/MPLE.c | 103 ergm-4.0.0/ergm/src/MPLE.h | 22 ergm-4.0.0/ergm/src/Makevars | 4 ergm-4.0.0/ergm/src/SAN.c | 349 ergm-4.0.0/ergm/src/SAN.c.template.do_not_include_directly.h |only ergm-4.0.0/ergm/src/SAN.h | 61 ergm-4.0.0/ergm/src/SAN.h.template.do_not_include_directly.h |only ergm-4.0.0/ergm/src/allstatistics.c | 114 ergm-4.0.0/ergm/src/changestat.c | 8 ergm-4.0.0/ergm/src/changestats.c | 3810 +++---- ergm-4.0.0/ergm/src/changestats.h | 152 ergm-4.0.0/ergm/src/changestats_auxnet.c |only ergm-4.0.0/ergm/src/changestats_auxnetalike.c |only ergm-4.0.0/ergm/src/changestats_coincidence.c | 22 ergm-4.0.0/ergm/src/changestats_concurrentties.c | 39 ergm-4.0.0/ergm/src/changestats_dgw_sp.c | 1003 -- ergm-4.0.0/ergm/src/changestats_dgw_sp.h | 48 ergm-4.0.0/ergm/src/changestats_experimental.c | 172 ergm-4.0.0/ergm/src/changestats_experimental.h | 70 ergm-4.0.0/ergm/src/changestats_homoproportion.c | 18 ergm-4.0.0/ergm/src/changestats_indices.c | 27 ergm-4.0.0/ergm/src/changestats_interaction.c |only ergm-4.0.0/ergm/src/changestats_internal.c | 11 ergm-4.0.0/ergm/src/changestats_operator.c |only ergm-4.0.0/ergm/src/changestats_spcache.c |only ergm-4.0.0/ergm/src/changestats_test.c | 114 ergm-4.0.0/ergm/src/edgetree.c | 386 ergm-4.0.0/ergm/src/edgetree_inline.do_not_include_directly.h |only ergm-4.0.0/ergm/src/ergm_dyad_hashmap_utils.c |only ergm-4.0.0/ergm/src/ergm_dyadgen.c |only ergm-4.0.0/ergm/src/ergm_omp.c |only ergm-4.0.0/ergm/src/ergm_omp.h |only ergm-4.0.0/ergm/src/ergm_rlebdm.c | 8 ergm-4.0.0/ergm/src/ergm_state.c |only ergm-4.0.0/ergm/src/ergm_type_defs_common.h |only 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ergm-4.0.0/ergm/src/wtgodfather.c | 115 ergm-4.0.0/ergm/src/wtmodel.c | 571 - ergm-4.0.0/ergm/src/wtnetstats.c | 103 ergm-4.0.0/ergm/tests/constrain_degrees_edges.R | 10 ergm-4.0.0/ergm/tests/drop_tests.R | 14 ergm-4.0.0/ergm/tests/ergm_term_doc_test.R | 10 ergm-4.0.0/ergm/tests/gw_sp_tests.R | 194 ergm-4.0.0/ergm/tests/hamming_termtests.R | 11 ergm-4.0.0/ergm/tests/miss_tests.CD.R | 16 ergm-4.0.0/ergm/tests/miss_tests.R | 31 ergm-4.0.0/ergm/tests/mple_largenetwork.R | 14 ergm-4.0.0/ergm/tests/mple_offset.R | 24 ergm-4.0.0/ergm/tests/nodrop.R | 10 ergm-4.0.0/ergm/tests/parallel.R | 26 ergm-4.0.0/ergm/tests/requireNamespaceTest.R | 16 ergm-4.0.0/ergm/tests/runtime_diags.R | 10 ergm-4.0.0/ergm/tests/simpletests.R | 10 ergm-4.0.0/ergm/tests/steppingtest.R | 12 ergm-4.0.0/ergm/tests/termTests.b12nodematch.R | 10 ergm-4.0.0/ergm/tests/termTests.bipartite.R | 143 ergm-4.0.0/ergm/tests/termTests.directed.R | 158 ergm-4.0.0/ergm/tests/termTests.flexible.R | 217 ergm-4.0.0/ergm/tests/termTests.undirected.R | 92 ergm-4.0.0/ergm/tests/termTests.valued.R | 335 ergm-4.0.0/ergm/tests/testgflomiss.R | 10 ergm-4.0.0/ergm/tests/testgmonkmiss.R | 10 ergm-4.0.0/ergm/tests/testthat.R | 10 ergm-4.0.0/ergm/tests/testthat/test-C-curved.R |only ergm-4.0.0/ergm/tests/testthat/test-Sum.R |only ergm-4.0.0/ergm/tests/testthat/test-bd.R | 16 ergm-4.0.0/ergm/tests/testthat/test-bipartite-missing-data.R | 10 ergm-4.0.0/ergm/tests/testthat/test-bridge-target.stats.R |only ergm-4.0.0/ergm/tests/testthat/test-c-ergm_model.R | 24 ergm-4.0.0/ergm/tests/testthat/test-checkpointing.R | 17 ergm-4.0.0/ergm/tests/testthat/test-constrain-blockdiag.R |only ergm-4.0.0/ergm/tests/testthat/test-constrain-dind.R |only ergm-4.0.0/ergm/tests/testthat/test-constrain-egocentric.R |only ergm-4.0.0/ergm/tests/testthat/test-constraints.R |only ergm-4.0.0/ergm/tests/testthat/test-ergm-godfather.R | 24 ergm-4.0.0/ergm/tests/testthat/test-ergm-san.R | 90 ergm-4.0.0/ergm/tests/testthat/test-ergm.bridge.llr.R |only ergm-4.0.0/ergm/tests/testthat/test-ergmMPLE.R |only ergm-4.0.0/ergm/tests/testthat/test-fix.curved.R |only ergm-4.0.0/ergm/tests/testthat/test-metrics.R |only ergm-4.0.0/ergm/tests/testthat/test-mple-target.R | 20 ergm-4.0.0/ergm/tests/testthat/test-nodemix.R |only ergm-4.0.0/ergm/tests/testthat/test-nonident-test.R | 19 ergm-4.0.0/ergm/tests/testthat/test-nonunique-names.R | 10 ergm-4.0.0/ergm/tests/testthat/test-offsets.R |only ergm-4.0.0/ergm/tests/testthat/test-operators.R |only ergm-4.0.0/ergm/tests/testthat/test-predict.ergm.R | 31 ergm-4.0.0/ergm/tests/testthat/test-proposal-bdstrattnt.R |only ergm-4.0.0/ergm/tests/testthat/test-proposal-bdtnt.R |only ergm-4.0.0/ergm/tests/testthat/test-proposal-strattnt.R |only ergm-4.0.0/ergm/tests/testthat/test-scoping.R |only ergm-4.0.0/ergm/tests/testthat/test-simulate-batch.R |only ergm-4.0.0/ergm/tests/testthat/test-snctrl.R |only ergm-4.0.0/ergm/tests/testthat/test-stocapprox.R |only ergm-4.0.0/ergm/tests/testthat/test-target-offset.R |only ergm-4.0.0/ergm/tests/testthat/test-term-Offset.R |only ergm-4.0.0/ergm/tests/testthat/test-term-attrcov.R |only ergm-4.0.0/ergm/tests/testthat/test-term-b12factor.R | 10 ergm-4.0.0/ergm/tests/testthat/test-term-edgecov.R | 10 ergm-4.0.0/ergm/tests/testthat/test-term-errors.R |only ergm-4.0.0/ergm/tests/testthat/test-term-mm.R | 176 ergm-4.0.0/ergm/tests/testthat/test-term-options.R | 19 ergm-4.0.0/ergm/tests/testthat/test-update.network.R |only ergm-4.0.0/ergm/tests/testthat/test-valued-terms.R | 15 ergm-4.0.0/ergm/tests/u_function.R |only ergm-4.0.0/ergm/tests/valued_sim.R | 17 ergm-4.0.0/ergm/vignettes/Network-Callback-API.Rmd |only ergm-4.0.0/ergm/vignettes/Proposal-Lookup-API.Rmd |only ergm-4.0.0/ergm/vignettes/Terms-API.Rmd |only ergm-4.0.0/ergm/vignettes/ergm-term-crossRef.Rmd | 13 ergm-4.0.0/ergm/vignettes/ergm.Rmd |only ergm-4.0.0/ergm/vignettes/nodal_attributes.Rmd | 52 470 files changed, 20920 insertions(+), 18886 deletions(-)
Title: Analysis and Simulation of Plant Disease Progress Curves
Description: Analysis and visualization of plant disease progress curve data. Functions for
fitting two-parameter population dynamics models (exponential, monomolecular, logistic
and Gompertz) to proportion data for single or multiple epidemics using either linear
or no-linear regression. Statistical and visual outputs are provided to aid in model
selection. Synthetic curves can be simulated for any of the models given the parameters.
See Laurence V. Madden, Gareth Hughes, and Frank van den Bosch (2007) <doi:10.1094/9780890545058>
for further information on the methods.
Author: Kaique dos S. Alves [aut, cre]
(<https://orcid.org/0000-0001-9187-0252>),
Emerson M. Del Ponte [aut] (<https://orcid.org/0000-0003-4398-409X>)
Maintainer: Kaique dos S. Alves <kaiquedsalves@gmail.com>
Diff between epifitter versions 0.2.0 dated 2020-11-25 and 0.3.0 dated 2021-06-14
DESCRIPTION | 8 MD5 | 45 +- NEWS.md | 10 R/gompi_fun.R | 3 R/logi_fun.R | 3 R/mono_fun.R | 3 R/sim_gompertz.R | 16 R/sim_logistic.R | 14 R/sim_monomolecular.R | 14 README.md | 58 +-- build/vignette.rds |binary data |only inst/desktop.ini |only inst/doc/fitting.R | 2 inst/doc/fitting.Rmd | 793 ++++++++++++++++++++++------------------------- inst/doc/fitting.html | 615 +++++++++++------------------------- inst/doc/simulation.Rmd | 381 +++++++++++----------- inst/doc/simulation.html | 471 +++++++-------------------- man/PowderyMildew.Rd |only man/figures/logo.png |binary man/sim_gompertz.Rd | 5 man/sim_logistic.Rd | 5 man/sim_monomolecular.Rd | 5 vignettes/fitting.Rmd | 793 ++++++++++++++++++++++------------------------- vignettes/simulation.Rmd | 381 +++++++++++----------- 25 files changed, 1544 insertions(+), 2081 deletions(-)
Title: Causal Modeling with Coincidence Analysis
Description: Provides comprehensive functionalities for causal modeling with Coincidence Analysis (CNA), which is a configurational comparative method of causal data analysis that was first introduced in Baumgartner (2009) <doi:10.1177/0049124109339369>, and generalized in Baumgartner & Ambuehl (2018) <doi:10.1017/psrm.2018.45>. CNA is designed to recover INUS-causation from data, which is particularly relevant for analyzing processes featuring conjunctural causation (component causation) and equifinality (alternative causation). CNA is currently the only method for INUS-discovery that allows for multiple effects (outcomes/endogenous factors), meaning it can analyze common-cause and causal chain structures.
Author: Mathias Ambuehl [aut, cre, cph],
Michael Baumgartner [aut, cph],
Ruedi Epple [ctb],
Veli-Pekka Parkkinen [ctb],
Alrik Thiem [ctb]
Maintainer: Mathias Ambuehl <mathias.ambuehl@consultag.ch>
Diff between cna versions 3.1.0 dated 2021-05-28 and 3.2.0 dated 2021-06-14
DESCRIPTION | 8 MD5 | 73 +-- R/cna.r | 2 R/cna_aux.r | 9 R/coherence.r | 2 R/condition.r | 4 R/configTable.R | 12 R/details.R | 2 R/full.ct.R | 2 R/randomConds.R | 8 R/rreduce.R | 19 R/selectCases.r | 20 build/vignette.rds |binary inst/NEWS | 4 inst/doc/cna.R | 182 ++++---- inst/doc/cna.Rnw | 191 ++++----- inst/doc/cna.pdf |binary man/allCombs.Rd | 5 man/cna-deprecated.Rd | 1 man/cna-internals.Rd | 2 man/cna-package.Rd | 7 man/cna.Rd | 1039 +++++++++++++++++++++++++------------------------- man/coherence.Rd | 2 man/condTbl.Rd | 4 man/condition.Rd | 56 +- man/configTable.Rd | 40 - man/cyclic.Rd | 2 man/full.ct.Rd | 14 man/is.inus.Rd | 8 man/makeFuzzy.Rd | 2 man/minimalize.Rd | 4 man/randomConds.Rd | 20 man/redundant.Rd | 2 man/rreduce.Rd | 2 man/selectCases.Rd | 20 man/shortcuts.Rd |only man/some.Rd | 6 vignettes/cna.Rnw | 191 ++++----- 38 files changed, 975 insertions(+), 990 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-20 0.42
2018-11-19 0.41
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-26 0.5.1
2016-10-11 0.5.0
2016-03-08 0.4.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-02-11 1.2
2019-09-17 1.1
2019-08-23 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-05-31 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-02-20 0.17.5
2017-07-02 0.17.4
2017-04-14 0.17.3
2017-03-24 0.17
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-07 1.1.0
2019-08-21 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-05-15 1.4.0
2017-08-02 1.3
Title: Small Area Estimation with Zero-Inflated Model
Description: This function produces empirical best linier unbiased predictions (EBLUPs) for Zero-Inflated data and its Relative Standard Error. Small Area Estimation with Zero-Inflated Model (SAE-ZIP) is a model developed for Zero-Inflated data that can lead us to overdispersion situation. To handle this kind of situation, this model is created. The model in this package is based on Small Area Estimation with Zero-Inflated Poisson model proposed by Dian Christien Arisona (2018)<https://repository.ipb.ac.id/handle/123456789/92308>. For the data sample itself, we use combination method between Roberto Benavent and Domingo Morales (2015)<doi:10.1016/j.csda.2015.07.013> and Sabine Krieg, Harm Jan Boonstra and Marc Smeets (2016)<doi:10.1515/jos-2016-0051>.
Author: Fadheel Wisnu Utomo [aut, trl, cre],
Ika Yuni Wulansari [aut, ths]
Maintainer: Fadheel Wisnu Utomo <221709671@stis.ac.id>
Diff between zipsae versions 1.0.1 dated 2021-06-09 and 1.0.2 dated 2021-06-14
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/zipsae.R | 18 +++++++++--------- README.md | 17 ++++++++++------- man/zipsae.Rd | 10 +++++----- 5 files changed, 31 insertions(+), 28 deletions(-)
Title: Perform Inference on Algorithm-Agnostic Variable Importance
Description: Calculate point estimates of and valid confidence intervals for
nonparametric, algorithm-agnostic variable importance measures in high and low dimensions,
using flexible estimators of the underlying regression functions. For more information
about the methods, please see Williamson et al. (Biometrics, 2020), Williamson et al. (arXiv, 2020+) <arXiv:2004.03683>, and Williamson and Feng (ICML, 2020).
Author: Brian D. Williamson [aut, cre]
(<https://orcid.org/0000-0002-7024-548X>),
Jean Feng [ctb],
Noah Simon [ths] (<https://orcid.org/0000-0002-8985-2474>),
Marco Carone [ths] (<https://orcid.org/0000-0003-2106-0953>)
Maintainer: Brian D. Williamson <bwillia2@fredhutch.org>
Diff between vimp versions 2.2.1 dated 2021-06-03 and 2.2.2 dated 2021-06-14
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 10 ++++++++++ inst/doc/introduction-to-vimp.html | 6 +++--- inst/doc/precomputed-regressions.html | 6 +++--- inst/doc/types-of-vims.html | 4 ++-- tests/testthat/test-binary_outcomes.R | 8 ++++---- 7 files changed, 31 insertions(+), 21 deletions(-)
Title: Extract Decennial Census and American Community Survey Data
Description: Download summary files from Census Bureau <https://www2.census.gov/>
and extract data, in particular high resolution data at
block, block group, and tract level, from decennial census and
American Community Survey 1-year and 5-year estimates.
Author: Guanglai Li
Maintainer: Guanglai Li <liguanglai@gmail.com>
Diff between totalcensus versions 0.6.5 dated 2020-12-11 and 0.6.6 dated 2021-06-14
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- R/download_census.R | 4 ++++ R/read_decennial.R | 12 +++++++++++- 4 files changed, 23 insertions(+), 9 deletions(-)
Title: Sum of Single Effects Linear Regression
Description: Implements methods for variable selection in linear
regression based on the "Sum of Single Effects" (SuSiE) model, as
described in Wang et al (2020) <DOI:10.1101/501114>. These methods
provide simple summaries, called "Credible Sets", for accurately
quantifying uncertainty in which variables should be selected.
The methods are motivated by genetic fine-mapping applications,
and are particularly well-suited to settings where variables are
highly correlated and detectable effects are sparse. The fitting
algorithm, a Bayesian analogue of stepwise selection methods
called "Iterative Bayesian Stepwise Selection" (IBSS), is simple
and fast, allowing the SuSiE model be fit to large data sets
(thousands of samples and hundreds of thousands of variables).
Author: Gao Wang [aut],
Yuxin Zou [aut],
Kaiqian Zhang [aut],
Peter Carbonetto [aut, cre],
Matthew Stephens [aut]
Maintainer: Peter Carbonetto <peter.carbonetto@gmail.com>
Diff between susieR versions 0.11.33 dated 2021-06-02 and 0.11.42 dated 2021-06-14
DESCRIPTION | 8 - MD5 | 52 ++++----- R/susie_plot_changepoint.R | 5 README.md | 13 +- build/partial.rdb |binary inst/doc/finemapping.html | 6 - inst/doc/finemapping_summary_statistics.html | 6 - inst/doc/l0_initialization.html | 4 inst/doc/mwe.html | 6 - inst/doc/sparse_matrix_strategy.html | 8 - inst/doc/sparse_susie_eval.html | 4 inst/doc/susie_refine.html | 6 - inst/doc/susierss_diagnostic.html | 6 - inst/doc/trend_filtering.html | 4 inst/doc/trendfiltering_derivations.pdf |binary man/susie_plot_changepoint.Rd | 5 tests/testthat/helper_testthat.R | 120 ++++++++++----------- tests/testthat/test_Eloglik_rss.R | 4 tests/testthat/test_SER_posterior_e_loglik_rss.R | 4 tests/testthat/test_get_ER2_rss.R | 4 tests/testthat/test_get_samples.R | 4 tests/testthat/test_null_weight.R | 6 - tests/testthat/test_prior_weights.R | 8 - tests/testthat/test_single_effect_regression_rss.R | 8 - tests/testthat/test_susie_rss.R | 4 tests/testthat/test_susie_rss_get_objective.R | 4 tests/testthat/test_update_each_effect_rss.R | 12 +- 27 files changed, 162 insertions(+), 149 deletions(-)
Title: Spatial Position Models
Description: Computes spatial position models: the potential model as defined
by Stewart (1941) <doi:10.1126/science.93.2404.89> and catchment areas as
defined by Reilly (1931) or Huff (1964) <doi:10.2307/1249154>.
Author: Timothée Giraud [cre, aut] (<https://orcid.org/0000-0002-1932-3323>),
Hadrien Commenges [aut],
Joël Boulier [ctb]
Maintainer: Timothée Giraud <timothee.giraud@cnrs.fr>
Diff between SpatialPosition versions 2.1.0 dated 2020-12-09 and 2.1.1 dated 2021-06-14
DESCRIPTION | 22 - MD5 | 30 - NEWS | 7 R/reilly.R | 2 R/smoothy.R | 2 R/stewart.R | 2 R/utils.R | 17 README.md | 4 build/vignette.rds |binary inst/doc/SpatialPosition.Rmd | 2 inst/doc/SpatialPosition.html | 714 +++++++++++++++++++--------------- inst/doc/StewartExample.html | 861 +++++++++++++++++++++++------------------- man/reilly.Rd | 2 man/smoothy.Rd | 2 man/stewart.Rd | 2 vignettes/SpatialPosition.Rmd | 2 16 files changed, 933 insertions(+), 738 deletions(-)
More information about SpatialPosition at CRAN
Permanent link
Title: Moment Condition Based Estimation of Linear Dynamic Panel Data
Models
Description: Linear dynamic panel data modeling based on linear and
nonlinear moment conditions as proposed by
Holtz-Eakin, Newey, and Rosen (1988) <doi:10.2307/1913103>,
Ahn and Schmidt (1995) <doi:10.1016/0304-4076(94)01641-C>,
and Arellano and Bover (1995) <doi:10.1016/0304-4076(94)01642-D>.
Estimation of the model parameters relies on the Generalized
Method of Moments (GMM), numerical optimization (when nonlinear
moment conditions are employed) and the computation of closed
form solutions (when estimation is based on linear moment
conditions). One-step, two-step and iterated estimation is
available. of closed form solutions. For inference and specification
testing, Windmeijer (2005) <doi:10.1016/j.jeconom.2004.02.005>
corrected standard errors, serial correlation tests, tests for
overidentification, and Wald tests are available. Functions for
visualizing panel data structures and modeling results obtained
from GMM estimation are also available. The plot methods include
functions to plot unbalanced panel structure, coefficient ranges
and coefficient paths across GMM iterations (the latter is
implemented according to the plot shown in
Hansen and Lee, 2021 <doi:10.3982/ECTA16274>).
Author: Markus Fritsch [aut, cre],
Joachim Schnurbus [aut],
Andrew Adrian Yu Pua [aut]
Maintainer: Markus Fritsch <Markus.Fritsch@uni-Passau.de>
Diff between pdynmc versions 0.9.3 dated 2020-12-04 and 0.9.4 dated 2021-06-14
pdynmc-0.9.3/pdynmc/inst/doc/pdynmc.ltx |only pdynmc-0.9.3/pdynmc/inst/doc/pdynmc.pdf |only pdynmc-0.9.3/pdynmc/vignettes/pdynmc.ltx |only pdynmc-0.9.4/pdynmc/DESCRIPTION | 26 pdynmc-0.9.4/pdynmc/MD5 | 36 pdynmc-0.9.4/pdynmc/NEWS.md | 13 pdynmc-0.9.4/pdynmc/R/pdynmc_estFct.R | 33 pdynmc-0.9.4/pdynmc/R/pdynmc_exploratory.R | 8 pdynmc-0.9.4/pdynmc/R/pdynmc_specTestFcst.R | 2 pdynmc-0.9.4/pdynmc/README.md | 8 pdynmc-0.9.4/pdynmc/build/partial.rdb |binary pdynmc-0.9.4/pdynmc/build/vignette.rds |binary pdynmc-0.9.4/pdynmc/inst/CITATION | 23 pdynmc-0.9.4/pdynmc/inst/REFERENCES.bib | 46 pdynmc-0.9.4/pdynmc/inst/doc/pdynmc-intro.pdf |only pdynmc-0.9.4/pdynmc/inst/doc/pdynmc-intro.pdf.asis |only pdynmc-0.9.4/pdynmc/inst/doc/pdynmc-introLong.pdf |only pdynmc-0.9.4/pdynmc/inst/doc/pdynmc-introLong.pdf.asis |only pdynmc-0.9.4/pdynmc/inst/doc/pdynmc-pres-in-a-nutshell.pdf |only pdynmc-0.9.4/pdynmc/inst/doc/pdynmc-pres-in-a-nutshell.pdf.asis |only pdynmc-0.9.4/pdynmc/man/pdynmc.Rd | 33 pdynmc-0.9.4/pdynmc/vignettes/REFERENCES.bib | 2867 +++++----- pdynmc-0.9.4/pdynmc/vignettes/pdynmc-intro.pdf.asis |only pdynmc-0.9.4/pdynmc/vignettes/pdynmc-introLong.pdf.asis |only pdynmc-0.9.4/pdynmc/vignettes/pdynmc-pres-in-a-nutshell.pdf.asis |only 25 files changed, 1582 insertions(+), 1513 deletions(-)
Title: Logit Models w/Preference & WTP Space Utility Parameterizations
Description: Estimation of multinomial (MNL) and mixed logit (MXL) models in R. Models can be estimated using "Preference" space or "Willingness-to-pay" (WTP) space utility parameterizations. Weighted models can also be estimated. An option is available to run a multistart optimization loop with random starting points in each iteration, which is useful for non-convex problems like MXL models or models with WTP space utility parameterizations. The main optimization loop uses the 'nloptr' package to minimize the negative log-likelihood function. Additional functions are available for computing and comparing WTP from both preference space and WTP space models and for predicting expected choices and choice probabilities for a set (or multiple sets) of alternatives based on an estimated model. MXL models assume uncorrelated heterogeneity covariances and are estimated using maximum simulated likelihood based on the algorithms in Train (2009) "Discrete Choice Methods with Simulation, 2nd Edition" <doi:10.1017/CBO9780511805271>.
Author: John Helveston [aut, cre, cph]
(<https://orcid.org/0000-0002-2657-9191>),
Connor Forsythe [aut]
Maintainer: John Helveston <john.helveston@gmail.com>
Diff between logitr versions 0.1.0 dated 2021-01-19 and 0.2.0 dated 2021-06-14
logitr-0.1.0/logitr/R/simulation.R |only logitr-0.1.0/logitr/inst/doc/simulations.R |only logitr-0.1.0/logitr/inst/doc/simulations.Rmd |only logitr-0.1.0/logitr/inst/doc/simulations.html |only logitr-0.1.0/logitr/inst/example/simulations.R |only logitr-0.1.0/logitr/inst/extdata/encoding_model_character_price.Rds |only logitr-0.1.0/logitr/inst/extdata/encoding_model_default.Rds |only logitr-0.1.0/logitr/inst/extdata/encoding_model_dummy_price.Rds |only logitr-0.1.0/logitr/inst/extdata/sim_mnl_pref.Rds |only logitr-0.1.0/logitr/inst/extdata/sim_mnl_wtp.Rds |only logitr-0.1.0/logitr/inst/extdata/sim_mxl_pref.Rds |only logitr-0.1.0/logitr/inst/extdata/sim_mxl_wtp.Rds |only logitr-0.1.0/logitr/vignettes/simulations.Rmd |only logitr-0.2.0/logitr/DESCRIPTION | 19 logitr-0.2.0/logitr/MD5 | 188 ++--- logitr-0.2.0/logitr/NAMESPACE | 2 logitr-0.2.0/logitr/NEWS.md | 51 + logitr-0.2.0/logitr/R/additionalInfo.R | 95 ++ logitr-0.2.0/logitr/R/draws.R | 6 logitr-0.2.0/logitr/R/encoding.R |only logitr-0.2.0/logitr/R/inputChecks.R |only logitr-0.2.0/logitr/R/logit.R | 24 logitr-0.2.0/logitr/R/logitr.R | 73 +- logitr-0.2.0/logitr/R/modelInputs.R | 348 +--------- logitr-0.2.0/logitr/R/optimLoop.R | 123 +-- logitr-0.2.0/logitr/R/predict.R |only logitr-0.2.0/logitr/R/summary.R | 52 - 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Title: Graphical Difference Testing
Description: Functions for performing graphical difference testing.
Differences are generated between raster images.
Comparisons can be performed between different package
versions and between different R versions.
Author: Paul Murrell
Maintainer: Paul Murrell <paul@stat.auckland.ac.nz>
Diff between gdiff versions 0.2-1 dated 2020-05-04 and 0.2-2 dated 2021-06-14
DESCRIPTION | 6 +- MD5 | 29 +++++----- NAMESPACE | 1 R/compare.R | 122 +++++++++++++++++++++++++++++++++++++++---- R/gdiff.R | 3 - R/session.R | 24 ++++++-- R/zzz.R | 3 - inst/NEWS.Rd | 14 ++++ inst/regression-tests/test.R | 9 ++- man/diffFiles.Rd |only man/gdiff.Rd | 2 man/gdiffDevice.Rd | 2 man/gdiffExamples.Rd | 2 man/gdiffExamplesOutput.Rd | 2 man/gdiffOutput.Rd | 2 man/gdiffSession.Rd | 2 16 files changed, 186 insertions(+), 37 deletions(-)
Title: Analysis of Cardiac Magnetic Resonance Images
Description: Computes maximum response from Cardiac Magnetic Resonance Images using spatial and voxel wise spline based Bayesian model. This is an implementation of the methods described in Schmid (2011) <doi:10.1109/TMI.2011.2109733> "Voxel-Based Adaptive Spatio-Temporal Modelling of Perfusion Cardiovascular MRI". IEEE TMI 30(7) p. 1305 - 1313.
Author: Volker Schmid [aut, cre]
Maintainer: Volker Schmid <volker.schmid@lmu.de>
Diff between cmR versions 1.0.1 dated 2021-03-31 and 1.0.3 dated 2021-06-14
DESCRIPTION | 8 ++++---- MD5 | 13 +++++++------ NEWS.md |only R/cmr_space.R | 2 +- R/pseudobullseye.R | 7 +++++-- build/vignette.rds |binary inst/doc/cmr-usage.html | 30 ++++++++++++++---------------- man/cmr.space.Rd | 2 +- 8 files changed, 32 insertions(+), 30 deletions(-)
Title: Experimental Statistics and Graphics for Agricultural Sciences
Description: Performs the analysis of completely randomized experimental designs (CRD), randomized blocks (RBD) and Latin square (LSD), experiments in double and triple factorial scheme (in CRD and RBD), experiments in subdivided plot scheme (in CRD and RBD), subdivided and joint analysis of experiments in CRD and RBD, linear regression analysis, test for two samples. The package performs analysis of variance, ANOVA assumptions and multiple comparison test of means or regression, according to Pimentel-Gomes (2009, ISBN: 978-85-7133-055-9), nonparametric test (Conover, 1999, ISBN: 0471160687), test for two samples, joint analysis of experiments according to Ferreira (2018, ISBN: 978-85-7269-566-4), Anova of aligned ranks (Wobbrock, JO, Findlater, L., Gergle, D., & Higgins , JJ (2011), <doi: 10.1145/1978942.1978963>) and generalized linear model (glm) for binomial and Poisson family in CRD and RBD (Carvalho, FJ (2019), <doi: 10.14393/ufu.te.2019.1244>). It can also be used to obtain descriptive measures and graphics, in addition to correlations and creative graphics used in agricultural sciences (Agronomy, Zootechnics, Food Science and related areas).
Author: Gabriel Danilo Shimizu [aut, cre]
(<https://orcid.org/0000-0001-8524-508X>),
Rodrigo Yudi Palhaci Marubayashi [aut, ctb]
(<https://orcid.org/0000-0003-2778-8654>),
Leandro Simoes Azeredo Goncalves [aut, ctb]
(<https://orcid.org/0000-0001-9700-9375>)
Maintainer: Gabriel Danilo Shimizu <shimizu@uel.br>
Diff between AgroR versions 1.1.0 dated 2021-05-28 and 1.2.0 dated 2021-06-14
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Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-05-17 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-01-07 0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-04-21 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-05-13 0.1-3
2010-09-26 0.1-2
2010-09-25 0.1-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-05-14 0.1-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-05-31 1.0
Title: Significance Brackets for 'ggplot2'
Description: Enrich your 'ggplots' with group-wise comparisons.
This package provides an easy way to indicate if two groups are
significantly different. Commonly this is shown by a bracket on top
connecting the groups of interest which itself is annotated with the
level of significance (NS, *, **, ***). The package provides a single
layer (geom_signif()) that takes the groups for comparison and the
test (t.test(), wilcox.text() etc.) as arguments and adds the
annotation to the plot.
Author: Constantin Ahlmann-Eltze [aut, cre, ctb]
(<https://orcid.org/0000-0002-3762-068X>, @const_ae),
Indrajeet Patil [aut, ctb] (<https://orcid.org/0000-0003-1995-6531>,
@patilindrajeets)
Maintainer: Constantin Ahlmann-Eltze <artjom31415@googlemail.com>
Diff between ggsignif versions 0.6.1 dated 2021-02-23 and 0.6.2 dated 2021-06-14
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Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data
management system with support for the Structured Query Language (SQL). This package includes all of
DuckDB and a R Database Interface (DBI) connector.
Author: Hannes Mühleisen [aut, cre] (<https://orcid.org/0000-0001-8552-0029>),
Mark Raasveldt [aut] (<https://orcid.org/0000-0001-5005-6844>),
DuckDB Contributors [aut],
Apache Software Foundation [cph],
PostgreSQL Global Development Group [cph],
The Regents of the University of California [cph],
Cameron Desrochers [cph],
Victor Zverovich [cph],
RAD Game Tools [cph],
Valve Software [cph],
Rich Geldreich [cph],
Tenacious Software LLC [cph],
The RE2 Authors [cph],
Google Inc. [cph],
Facebook Inc. [cph],
Steven G. Johnson [cph],
Jiahao Chen [cph],
Tony Kelman [cph],
Jonas Fonseca [cph],
Lukas Fittl [cph],
Salvatore Sanfilippo [cph],
Art.sy, Inc. [cph],
Oran Agra [cph],
Redis Labs, Inc. [cph],
Melissa O'Neill [cph],
PCG Project contributors [cph]
Maintainer: Hannes Mühleisen <hannes@cwi.nl>
Diff between duckdb versions 0.2.6 dated 2021-05-09 and 0.2.7 dated 2021-06-14
duckdb-0.2.6/duckdb/src/duckdb/src/common/gzip_stream.cpp |only duckdb-0.2.6/duckdb/src/duckdb/src/common/types/null_value.cpp |only duckdb-0.2.6/duckdb/src/duckdb/src/common/vector_operations/gather.cpp |only duckdb-0.2.6/duckdb/src/duckdb/src/function/table/information_schema |only duckdb-0.2.6/duckdb/src/duckdb/src/function/table/information_schema_functions.cpp |only duckdb-0.2.6/duckdb/src/duckdb/src/function/table/sqlite |only duckdb-0.2.6/duckdb/src/duckdb/src/function/table/sqlite_functions.cpp |only duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/common/gzip_stream.hpp |only duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/function/table/information_schema_functions.hpp |only duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/function/table/sqlite_functions.hpp |only duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/storage/column_data.hpp |only duckdb-0.2.6/duckdb/src/duckdb/src/include/duckdb/storage/table/morsel_info.hpp |only duckdb-0.2.6/duckdb/src/duckdb/src/storage/column_data.cpp |only duckdb-0.2.6/duckdb/src/duckdb/src/storage/table/morsel_info.cpp |only duckdb-0.2.6/duckdb/src/duckdbr.cpp |only duckdb-0.2.7/duckdb/DESCRIPTION | 8 duckdb-0.2.7/duckdb/MD5 | 1020 duckdb-0.2.7/duckdb/NAMESPACE | 2 duckdb-0.2.7/duckdb/R/Connection.R | 2 duckdb-0.2.7/duckdb/R/Driver.R | 9 duckdb-0.2.7/duckdb/R/Viewer.R | 4 duckdb-0.2.7/duckdb/R/register.R | 31 duckdb-0.2.7/duckdb/man/duckdb.Rd | 7 duckdb-0.2.7/duckdb/man/duckdb_register_arrow.Rd |only duckdb-0.2.7/duckdb/src/Makevars | 4 duckdb-0.2.7/duckdb/src/altrep.cpp |only duckdb-0.2.7/duckdb/src/connection.cpp |only duckdb-0.2.7/duckdb/src/database.cpp |only duckdb-0.2.7/duckdb/src/duckdb/amalgamation-1.cpp | 20 duckdb-0.2.7/duckdb/src/duckdb/amalgamation-2.cpp | 6 duckdb-0.2.7/duckdb/src/duckdb/amalgamation-3.cpp | 14 duckdb-0.2.7/duckdb/src/duckdb/amalgamation-4.cpp | 58 duckdb-0.2.7/duckdb/src/duckdb/amalgamation-5.cpp | 6 duckdb-0.2.7/duckdb/src/duckdb/amalgamation-6.cpp | 6 duckdb-0.2.7/duckdb/src/duckdb/amalgamation-7.cpp | 22 duckdb-0.2.7/duckdb/src/duckdb/amalgamation-8.cpp | 12 duckdb-0.2.7/duckdb/src/duckdb/extension/extension_helper.hpp | 14 duckdb-0.2.7/duckdb/src/duckdb/extension/parquet/column_reader.cpp | 4 duckdb-0.2.7/duckdb/src/duckdb/extension/parquet/include/column_reader.hpp | 3 duckdb-0.2.7/duckdb/src/duckdb/extension/parquet/include/parquet_reader.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/extension/parquet/include/resizable_buffer.hpp | 7 duckdb-0.2.7/duckdb/src/duckdb/extension/parquet/include/struct_column_reader.hpp | 15 duckdb-0.2.7/duckdb/src/duckdb/extension/parquet/parquet-extension.cpp | 6 duckdb-0.2.7/duckdb/src/duckdb/extension/parquet/parquet_reader.cpp | 174 duckdb-0.2.7/duckdb/src/duckdb/extension/parquet/parquet_statistics.cpp | 8 duckdb-0.2.7/duckdb/src/duckdb/extension/parquet/parquet_writer.cpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/catalog/catalog.cpp | 56 duckdb-0.2.7/duckdb/src/duckdb/src/catalog/catalog_entry.cpp | 5 duckdb-0.2.7/duckdb/src/duckdb/src/catalog/catalog_entry/schema_catalog_entry.cpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/catalog/catalog_entry/table_catalog_entry.cpp | 13 duckdb-0.2.7/duckdb/src/duckdb/src/catalog/catalog_set.cpp | 117 duckdb-0.2.7/duckdb/src/duckdb/src/catalog/default/default_functions.cpp | 89 duckdb-0.2.7/duckdb/src/duckdb/src/catalog/default/default_schemas.cpp | 10 duckdb-0.2.7/duckdb/src/duckdb/src/catalog/default/default_views.cpp | 49 duckdb-0.2.7/duckdb/src/duckdb/src/catalog/dependency_manager.cpp | 16 duckdb-0.2.7/duckdb/src/duckdb/src/common/allocator.cpp | 9 duckdb-0.2.7/duckdb/src/duckdb/src/common/arrow_wrapper.cpp |only duckdb-0.2.7/duckdb/src/duckdb/src/common/cycle_counter.cpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/common/file_buffer.cpp | 9 duckdb-0.2.7/duckdb/src/duckdb/src/common/file_system.cpp | 251 duckdb-0.2.7/duckdb/src/duckdb/src/common/gzip_file_system.cpp |only duckdb-0.2.7/duckdb/src/duckdb/src/common/limits.cpp | 8 duckdb-0.2.7/duckdb/src/duckdb/src/common/operator/cast_operators.cpp | 43 duckdb-0.2.7/duckdb/src/duckdb/src/common/progress_bar.cpp | 5 duckdb-0.2.7/duckdb/src/duckdb/src/common/row_operations |only duckdb-0.2.7/duckdb/src/duckdb/src/common/serializer/buffered_file_writer.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/common/tree_renderer.cpp | 38 duckdb-0.2.7/duckdb/src/duckdb/src/common/types.cpp | 529 duckdb-0.2.7/duckdb/src/duckdb/src/common/types/chunk_collection.cpp | 3 duckdb-0.2.7/duckdb/src/duckdb/src/common/types/data_chunk.cpp | 416 duckdb-0.2.7/duckdb/src/duckdb/src/common/types/hugeint.cpp | 10 duckdb-0.2.7/duckdb/src/duckdb/src/common/types/row_data_collection.cpp | 205 duckdb-0.2.7/duckdb/src/duckdb/src/common/types/row_layout.cpp |only duckdb-0.2.7/duckdb/src/duckdb/src/common/types/string_type.cpp | 6 duckdb-0.2.7/duckdb/src/duckdb/src/common/types/validity_mask.cpp | 28 duckdb-0.2.7/duckdb/src/duckdb/src/common/types/value.cpp | 80 duckdb-0.2.7/duckdb/src/duckdb/src/common/types/vector.cpp | 420 duckdb-0.2.7/duckdb/src/duckdb/src/common/types/vector_buffer.cpp | 8 duckdb-0.2.7/duckdb/src/duckdb/src/common/value_operations/comparison_operations.cpp | 8 duckdb-0.2.7/duckdb/src/duckdb/src/common/value_operations/hash.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/common/vector_operations/vector_cast.cpp | 112 duckdb-0.2.7/duckdb/src/duckdb/src/common/vector_operations/vector_copy.cpp | 33 duckdb-0.2.7/duckdb/src/duckdb/src/common/vector_operations/vector_storage.cpp | 11 duckdb-0.2.7/duckdb/src/duckdb/src/execution/adaptive_filter.cpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/execution/aggregate_hashtable.cpp | 415 duckdb-0.2.7/duckdb/src/duckdb/src/execution/base_aggregate_hashtable.cpp | 61 duckdb-0.2.7/duckdb/src/duckdb/src/execution/expression_executor.cpp | 88 duckdb-0.2.7/duckdb/src/duckdb/src/execution/expression_executor/execute_between.cpp | 6 duckdb-0.2.7/duckdb/src/duckdb/src/execution/expression_executor/execute_case.cpp | 45 duckdb-0.2.7/duckdb/src/duckdb/src/execution/expression_executor/execute_cast.cpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/execution/expression_executor/execute_comparison.cpp | 11 duckdb-0.2.7/duckdb/src/duckdb/src/execution/expression_executor/execute_conjunction.cpp | 13 duckdb-0.2.7/duckdb/src/duckdb/src/execution/expression_executor/execute_constant.cpp | 6 duckdb-0.2.7/duckdb/src/duckdb/src/execution/expression_executor/execute_function.cpp | 17 duckdb-0.2.7/duckdb/src/duckdb/src/execution/expression_executor/execute_operator.cpp | 6 duckdb-0.2.7/duckdb/src/duckdb/src/execution/expression_executor/execute_parameter.cpp | 6 duckdb-0.2.7/duckdb/src/duckdb/src/execution/expression_executor/execute_reference.cpp | 6 duckdb-0.2.7/duckdb/src/duckdb/src/execution/expression_executor_state.cpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/execution/index/art/art.cpp | 5 duckdb-0.2.7/duckdb/src/duckdb/src/execution/join_hashtable.cpp | 466 duckdb-0.2.7/duckdb/src/duckdb/src/execution/nested_loop_join/nested_loop_join_inner.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/execution/nested_loop_join/nested_loop_join_mark.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/aggregate/physical_hash_aggregate.cpp | 12 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/aggregate/physical_perfecthash_aggregate.cpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/aggregate/physical_simple_aggregate.cpp | 13 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/aggregate/physical_window.cpp | 19 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/filter/physical_filter.cpp | 5 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/helper/physical_execute.cpp | 3 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/helper/physical_limit.cpp | 3 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/helper/physical_load.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/helper/physical_pragma.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/helper/physical_prepare.cpp | 3 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/helper/physical_reservoir_sample.cpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/helper/physical_set.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/helper/physical_streaming_sample.cpp | 7 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/helper/physical_transaction.cpp | 3 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/helper/physical_vacuum.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/join/physical_blockwise_nl_join.cpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/join/physical_cross_product.cpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/join/physical_delim_join.cpp | 5 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/join/physical_hash_join.cpp | 30 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/join/physical_index_join.cpp | 15 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/join/physical_nested_loop_join.cpp | 24 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/join/physical_piecewise_merge_join.cpp | 24 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/order/physical_order.cpp | 679 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/order/physical_top_n.cpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/persistent/buffered_csv_reader.cpp | 72 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/persistent/physical_copy_to_file.cpp | 5 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/persistent/physical_delete.cpp | 7 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/persistent/physical_export.cpp | 33 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/persistent/physical_insert.cpp | 12 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/persistent/physical_update.cpp | 12 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/projection/physical_projection.cpp | 5 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/projection/physical_tableinout_function.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/projection/physical_unnest.cpp | 3 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/scan/physical_chunk_scan.cpp | 3 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/scan/physical_dummy_scan.cpp | 3 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/scan/physical_empty_result.cpp | 3 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/scan/physical_expression_scan.cpp | 11 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/scan/physical_table_scan.cpp | 14 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/schema/physical_alter.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/schema/physical_create_function.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/schema/physical_create_index.cpp | 5 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/schema/physical_create_schema.cpp | 3 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/schema/physical_create_sequence.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/schema/physical_create_table.cpp | 3 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/schema/physical_create_table_as.cpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/schema/physical_create_view.cpp | 3 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/schema/physical_drop.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/set/physical_recursive_cte.cpp | 23 duckdb-0.2.7/duckdb/src/duckdb/src/execution/operator/set/physical_union.cpp | 3 duckdb-0.2.7/duckdb/src/duckdb/src/execution/perfect_aggregate_hashtable.cpp | 80 duckdb-0.2.7/duckdb/src/duckdb/src/execution/physical_operator.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/execution/physical_plan/plan_export.cpp | 3 duckdb-0.2.7/duckdb/src/duckdb/src/execution/physical_plan/plan_get.cpp | 19 duckdb-0.2.7/duckdb/src/duckdb/src/execution/physical_plan_generator.cpp | 14 duckdb-0.2.7/duckdb/src/duckdb/src/execution/window_segment_tree.cpp | 108 duckdb-0.2.7/duckdb/src/duckdb/src/function/aggregate/algebraic/avg.cpp | 9 duckdb-0.2.7/duckdb/src/duckdb/src/function/aggregate/distributive/approx_count.cpp | 10 duckdb-0.2.7/duckdb/src/duckdb/src/function/aggregate/distributive/arg_min_max.cpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/function/aggregate/distributive/bitagg.cpp | 6 duckdb-0.2.7/duckdb/src/duckdb/src/function/aggregate/distributive/bool.cpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/function/aggregate/distributive/count.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/function/aggregate/distributive/entropy.cpp | 24 duckdb-0.2.7/duckdb/src/duckdb/src/function/aggregate/distributive/first.cpp | 86 duckdb-0.2.7/duckdb/src/duckdb/src/function/aggregate/distributive/kurtosis.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/function/aggregate/distributive/minmax.cpp | 7 duckdb-0.2.7/duckdb/src/duckdb/src/function/aggregate/distributive/product.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/function/aggregate/distributive/skew.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/function/aggregate/distributive/string_agg.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/function/aggregate/distributive/sum.cpp | 12 duckdb-0.2.7/duckdb/src/duckdb/src/function/aggregate/distributive_functions.cpp | 1 duckdb-0.2.7/duckdb/src/duckdb/src/function/aggregate/holistic/approximate_quantile.cpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/function/aggregate/holistic/mode.cpp | 173 duckdb-0.2.7/duckdb/src/duckdb/src/function/aggregate/holistic/quantile.cpp | 280 duckdb-0.2.7/duckdb/src/duckdb/src/function/aggregate/holistic/reservoir_quantile.cpp | 14 duckdb-0.2.7/duckdb/src/duckdb/src/function/aggregate/nested/histogram.cpp | 79 duckdb-0.2.7/duckdb/src/duckdb/src/function/aggregate/nested/list.cpp | 16 duckdb-0.2.7/duckdb/src/duckdb/src/function/aggregate/regression/regr_avg.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/function/aggregate/regression/regr_intercept.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/function/aggregate/regression/regr_r2.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/function/aggregate/regression/regr_sxx_syy.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/function/aggregate/regression/regr_sxy.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/function/cast_rules.cpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/function/function.cpp | 1 duckdb-0.2.7/duckdb/src/duckdb/src/function/macro_function.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/function/pragma/pragma_functions.cpp | 90 duckdb-0.2.7/duckdb/src/duckdb/src/function/pragma/pragma_queries.cpp | 7 duckdb-0.2.7/duckdb/src/duckdb/src/function/pragma_function.cpp | 8 duckdb-0.2.7/duckdb/src/duckdb/src/function/scalar/date/strftime.cpp | 115 duckdb-0.2.7/duckdb/src/duckdb/src/function/scalar/generic_functions.cpp | 1 duckdb-0.2.7/duckdb/src/duckdb/src/function/scalar/math/numeric.cpp | 68 duckdb-0.2.7/duckdb/src/duckdb/src/function/scalar/math_functions.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/function/scalar/nested/array_slice.cpp | 1 duckdb-0.2.7/duckdb/src/duckdb/src/function/scalar/nested/list_extract.cpp | 8 duckdb-0.2.7/duckdb/src/duckdb/src/function/scalar/nested/list_value.cpp | 16 duckdb-0.2.7/duckdb/src/duckdb/src/function/scalar/nested/map |only duckdb-0.2.7/duckdb/src/duckdb/src/function/scalar/nested/map_extract.cpp |only duckdb-0.2.7/duckdb/src/duckdb/src/function/scalar/nested/struct_extract.cpp | 36 duckdb-0.2.7/duckdb/src/duckdb/src/function/scalar/nested/struct_pack.cpp | 16 duckdb-0.2.7/duckdb/src/duckdb/src/function/scalar/nested_functions.cpp | 3 duckdb-0.2.7/duckdb/src/duckdb/src/function/scalar/operators/add.cpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/function/scalar/operators/arithmetic.cpp | 39 duckdb-0.2.7/duckdb/src/duckdb/src/function/scalar/operators/multiply.cpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/function/scalar/operators/subtract.cpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/function/scalar/sequence/nextval.cpp | 1 duckdb-0.2.7/duckdb/src/duckdb/src/function/scalar/string/string_split.cpp | 18 duckdb-0.2.7/duckdb/src/duckdb/src/function/scalar/system |only duckdb-0.2.7/duckdb/src/duckdb/src/function/table/arrow.cpp | 827 duckdb-0.2.7/duckdb/src/duckdb/src/function/table/copy_csv.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/function/table/glob.cpp | 3 duckdb-0.2.7/duckdb/src/duckdb/src/function/table/pragma_detailed_profiling_output.cpp | 96 duckdb-0.2.7/duckdb/src/duckdb/src/function/table/pragma_last_profiling_output.cpp | 9 duckdb-0.2.7/duckdb/src/duckdb/src/function/table/range.cpp | 3 duckdb-0.2.7/duckdb/src/duckdb/src/function/table/read_csv.cpp | 20 duckdb-0.2.7/duckdb/src/duckdb/src/function/table/repeat.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/function/table/system |only duckdb-0.2.7/duckdb/src/duckdb/src/function/table/system_functions.cpp |only duckdb-0.2.7/duckdb/src/duckdb/src/function/table/table_scan.cpp | 8 duckdb-0.2.7/duckdb/src/duckdb/src/function/table/unnest.cpp |only duckdb-0.2.7/duckdb/src/duckdb/src/function/table/version/pragma_version.cpp | 8 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb.h | 11 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/catalog/catalog.hpp | 8 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry.hpp | 7 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_set.hpp | 30 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/catalog/default/default_functions.hpp | 1 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/catalog/default/default_generator.hpp | 6 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/catalog/default/default_schemas.hpp | 1 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/catalog/default/default_views.hpp | 1 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/catalog/dependency.hpp | 10 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/catalog/dependency_manager.hpp | 5 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/common/allocator.hpp | 15 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/common/arrow.hpp | 5 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/common/arrow_wrapper.hpp |only duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/common/cycle_counter.hpp | 59 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/common/enums/file_compression_type.hpp |only duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/common/enums/filter_propagate_result.hpp |only duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/common/file_buffer.hpp | 5 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/common/file_system.hpp | 59 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/common/gzip_file_system.hpp |only duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/common/helper.hpp | 16 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/common/operator/comparison_operators.hpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/common/operator/numeric_binary_operators.hpp | 7 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/common/progress_bar.hpp | 8 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/common/row_operations |only duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/common/serializer/buffered_file_writer.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/common/single_thread_ptr.hpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/common/tree_renderer.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/common/types.hpp | 86 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/common/types/null_value.hpp | 45 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/common/types/row_data_collection.hpp | 18 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/common/types/row_layout.hpp |only duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/common/types/selection_vector.hpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/common/types/validity_mask.hpp | 161 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/common/types/value.hpp | 18 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/common/types/vector.hpp | 59 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/common/types/vector_buffer.hpp | 9 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/common/vector_operations/aggregate_executor.hpp | 16 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/common/vector_operations/vector_operations.hpp | 10 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/adaptive_filter.hpp | 3 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/aggregate_hashtable.hpp | 20 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/base_aggregate_hashtable.hpp | 48 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/executor.hpp | 3 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/expression_executor.hpp | 95 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/expression_executor_state.hpp | 9 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/index/art/art.hpp | 5 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/join_hashtable.hpp | 30 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/nested_loop_join.hpp | 5 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_hash_aggregate.hpp | 7 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_perfecthash_aggregate.hpp | 5 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_simple_aggregate.hpp | 6 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_window.hpp | 6 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/filter/physical_filter.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_execute.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_limit.hpp | 11 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_load.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_pragma.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_prepare.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_reservoir_sample.hpp | 5 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_set.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_streaming_sample.hpp | 6 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_transaction.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_vacuum.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_blockwise_nl_join.hpp | 5 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_cross_product.hpp | 5 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_delim_join.hpp | 5 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_hash_join.hpp | 10 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_index_join.hpp | 5 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_nested_loop_join.hpp | 12 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_piecewise_merge_join.hpp | 11 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/order/physical_order.hpp | 6 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/order/physical_top_n.hpp | 5 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/buffered_csv_reader.hpp | 13 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_copy_to_file.hpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_delete.hpp | 5 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_export.hpp | 9 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_insert.hpp | 6 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_update.hpp | 6 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/projection/physical_projection.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/projection/physical_tableinout_function.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/projection/physical_unnest.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/scan/physical_chunk_scan.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/scan/physical_dummy_scan.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/scan/physical_empty_result.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/scan/physical_expression_scan.hpp | 3 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/scan/physical_table_scan.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_alter.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_function.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_index.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_schema.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_sequence.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_table.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_table_as.hpp | 5 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_view.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_drop.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/set/physical_recursive_cte.hpp | 10 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/operator/set/physical_union.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/perfect_aggregate_hashtable.hpp | 8 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/physical_operator.hpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/physical_sink.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/execution/window_segment_tree.hpp | 9 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/function/aggregate/algebraic/corr.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/function/aggregate/algebraic/covar.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/function/aggregate/algebraic/stddev.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/function/aggregate/distributive_functions.hpp | 5 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/function/aggregate/regression/regr_count.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/function/aggregate/regression/regr_slope.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/function/aggregate/sum_helpers.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/function/aggregate_function.hpp | 27 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/function/function.hpp | 1 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/function/scalar/generic_functions.hpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/function/scalar/math_functions.hpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/function/scalar/nested_functions.hpp | 10 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/function/table/arrow.hpp | 95 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/function/table/list.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/function/table/range.hpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/function/table/read_csv.hpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/function/table/system_functions.hpp |only duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/function/table_function.hpp | 6 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/main/client_context.hpp | 14 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/main/config.hpp | 28 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/main/query_profiler.hpp | 101 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/main/query_result.hpp | 13 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/optimizer/filter_combiner.hpp | 10 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/optimizer/statistics_propagator.hpp | 15 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/parallel/pipeline.hpp | 11 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/parallel/task_context.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/parser/constraints/unique_constraint.hpp | 3 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/parser/expression/window_expression.hpp | 3 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/exported_table_data.hpp |only duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/parser/query_node.hpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/parser/result_modifier.hpp | 1 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/parser/tableref.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/parser/transformer.hpp | 56 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/planner/column_binding.hpp | 1 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder.hpp | 9 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/planner/filter |only duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_export.hpp | 7 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_get.hpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/planner/table_filter.hpp | 44 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/storage/block.hpp | 7 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/storage/buffer/block_handle.hpp | 6 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/storage/buffer_manager.hpp | 16 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/storage/checkpoint/table_data_reader.hpp | 3 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/storage/checkpoint/table_data_writer.hpp | 7 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/storage/data_pointer.hpp | 19 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/storage/data_table.hpp | 74 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/storage/index.hpp | 9 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/storage/meta_block_writer.hpp | 1 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/storage/numeric_segment.hpp | 9 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/storage/statistics/base_statistics.hpp | 1 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/storage/statistics/numeric_statistics.hpp | 3 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/storage/statistics/segment_statistics.hpp | 7 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/storage/statistics/string_statistics.hpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/storage/statistics/struct_statistics.hpp |only duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/storage/string_segment.hpp | 22 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/storage/table/append_state.hpp | 27 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/storage/table/chunk_info.hpp | 18 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/storage/table/column_checkpoint_state.hpp |only duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/storage/table/column_data.hpp |only duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/storage/table/column_segment.hpp | 26 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/storage/table/persistent_segment.hpp | 14 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/storage/table/persistent_table_data.hpp | 11 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/storage/table/row_group.hpp |only duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/storage/table/scan_state.hpp | 55 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/storage/table/standard_column_data.hpp | 39 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/storage/table/struct_column_data.hpp |only duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/storage/table/transient_segment.hpp | 15 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/storage/table/update_segment.hpp | 40 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/storage/table/validity_column_data.hpp | 11 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/storage/table/validity_segment.hpp | 9 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/storage/uncompressed_segment.hpp | 30 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/storage/write_ahead_log.hpp | 10 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/transaction/local_storage.hpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/transaction/transaction.hpp | 1 duckdb-0.2.7/duckdb/src/duckdb/src/include/duckdb/transaction/update_info.hpp | 3 duckdb-0.2.7/duckdb/src/duckdb/src/main/appender.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/main/client_context.cpp | 70 duckdb-0.2.7/duckdb/src/duckdb/src/main/config.cpp |only duckdb-0.2.7/duckdb/src/duckdb/src/main/connection.cpp | 6 duckdb-0.2.7/duckdb/src/duckdb/src/main/database.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/main/duckdb-c.cpp | 8 duckdb-0.2.7/duckdb/src/duckdb/src/main/query_profiler.cpp | 203 duckdb-0.2.7/duckdb/src/duckdb/src/main/query_result.cpp | 248 duckdb-0.2.7/duckdb/src/duckdb/src/optimizer/filter_combiner.cpp | 494 duckdb-0.2.7/duckdb/src/duckdb/src/optimizer/filter_pullup.cpp | 3 duckdb-0.2.7/duckdb/src/duckdb/src/optimizer/filter_pushdown.cpp | 1 duckdb-0.2.7/duckdb/src/duckdb/src/optimizer/optimizer.cpp | 58 duckdb-0.2.7/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_get.cpp | 32 duckdb-0.2.7/duckdb/src/duckdb/src/optimizer/remove_unused_columns.cpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/optimizer/rule/distributivity.cpp | 20 duckdb-0.2.7/duckdb/src/duckdb/src/optimizer/statistics/operator/propagate_get.cpp | 58 duckdb-0.2.7/duckdb/src/duckdb/src/parallel/executor.cpp | 82 duckdb-0.2.7/duckdb/src/duckdb/src/parallel/pipeline.cpp | 44 duckdb-0.2.7/duckdb/src/duckdb/src/parallel/thread_context.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/parser/constraints/not_null_constraint.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/parser/constraints/unique_constraint.cpp | 21 duckdb-0.2.7/duckdb/src/duckdb/src/parser/expression/window_expression.cpp | 110 duckdb-0.2.7/duckdb/src/duckdb/src/parser/query_node.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/parser/result_modifier.cpp | 16 duckdb-0.2.7/duckdb/src/duckdb/src/parser/tableref.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/parser/transform/constraint/transform_constraint.cpp | 6 duckdb-0.2.7/duckdb/src/duckdb/src/parser/transform/expression/transform_array_access.cpp | 13 duckdb-0.2.7/duckdb/src/duckdb/src/parser/transform/expression/transform_bool_expr.cpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/parser/transform/expression/transform_case.cpp | 11 duckdb-0.2.7/duckdb/src/duckdb/src/parser/transform/expression/transform_cast.cpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/parser/transform/expression/transform_coalesce.cpp | 5 duckdb-0.2.7/duckdb/src/duckdb/src/parser/transform/expression/transform_columnref.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/parser/transform/expression/transform_constant.cpp | 8 duckdb-0.2.7/duckdb/src/duckdb/src/parser/transform/expression/transform_expression.cpp | 57 duckdb-0.2.7/duckdb/src/duckdb/src/parser/transform/expression/transform_function.cpp | 26 duckdb-0.2.7/duckdb/src/duckdb/src/parser/transform/expression/transform_interval.cpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/parser/transform/expression/transform_is_null.cpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/parser/transform/expression/transform_lambda.cpp | 6 duckdb-0.2.7/duckdb/src/duckdb/src/parser/transform/expression/transform_operator.cpp | 46 duckdb-0.2.7/duckdb/src/duckdb/src/parser/transform/expression/transform_param_ref.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/parser/transform/expression/transform_positional_reference.cpp | 3 duckdb-0.2.7/duckdb/src/duckdb/src/parser/transform/expression/transform_subquery.cpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/parser/transform/helpers/transform_groupby.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/parser/transform/helpers/transform_orderby.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/parser/transform/helpers/transform_sample.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/parser/transform/helpers/transform_typename.cpp | 149 duckdb-0.2.7/duckdb/src/duckdb/src/parser/transform/statement/transform_alter_table.cpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/parser/transform/statement/transform_call.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/parser/transform/statement/transform_copy.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/parser/transform/statement/transform_create_function.cpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/parser/transform/statement/transform_create_index.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/parser/transform/statement/transform_create_table.cpp | 7 duckdb-0.2.7/duckdb/src/duckdb/src/parser/transform/statement/transform_delete.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/parser/transform/statement/transform_insert.cpp | 5 duckdb-0.2.7/duckdb/src/duckdb/src/parser/transform/statement/transform_pragma.cpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/parser/transform/statement/transform_prepare.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/parser/transform/statement/transform_select_node.cpp | 12 duckdb-0.2.7/duckdb/src/duckdb/src/parser/transform/statement/transform_set.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/parser/transform/statement/transform_update.cpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/parser/transform/tableref/transform_join.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/parser/transform/tableref/transform_table_function.cpp | 17 duckdb-0.2.7/duckdb/src/duckdb/src/planner/binder/expression/bind_collate_expression.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/planner/binder/expression/bind_comparison_expression.cpp | 14 duckdb-0.2.7/duckdb/src/duckdb/src/planner/binder/expression/bind_macro_expression.cpp | 1 duckdb-0.2.7/duckdb/src/duckdb/src/planner/binder/expression/bind_operator_expression.cpp | 11 duckdb-0.2.7/duckdb/src/duckdb/src/planner/binder/expression/bind_unnest_expression.cpp | 8 duckdb-0.2.7/duckdb/src/duckdb/src/planner/binder/query_node/bind_select_node.cpp | 11 duckdb-0.2.7/duckdb/src/duckdb/src/planner/binder/statement/bind_copy.cpp | 4 duckdb-0.2.7/duckdb/src/duckdb/src/planner/binder/statement/bind_create_table.cpp | 3 duckdb-0.2.7/duckdb/src/duckdb/src/planner/binder/statement/bind_export.cpp | 62 duckdb-0.2.7/duckdb/src/duckdb/src/planner/binder/tableref/bind_basetableref.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/planner/binder/tableref/bind_table_function.cpp | 3 duckdb-0.2.7/duckdb/src/duckdb/src/planner/expression/bound_cast_expression.cpp | 6 duckdb-0.2.7/duckdb/src/duckdb/src/planner/expression/bound_window_expression.cpp | 120 duckdb-0.2.7/duckdb/src/duckdb/src/planner/expression_binder.cpp | 51 duckdb-0.2.7/duckdb/src/duckdb/src/planner/filter |only duckdb-0.2.7/duckdb/src/duckdb/src/planner/operator/logical_get.cpp | 9 duckdb-0.2.7/duckdb/src/duckdb/src/planner/planner.cpp | 6 duckdb-0.2.7/duckdb/src/duckdb/src/planner/table_filter.cpp |only duckdb-0.2.7/duckdb/src/duckdb/src/storage/block.cpp | 3 duckdb-0.2.7/duckdb/src/duckdb/src/storage/buffer/managed_buffer.cpp | 3 duckdb-0.2.7/duckdb/src/duckdb/src/storage/buffer_manager.cpp | 89 duckdb-0.2.7/duckdb/src/duckdb/src/storage/checkpoint/table_data_reader.cpp | 39 duckdb-0.2.7/duckdb/src/duckdb/src/storage/checkpoint/table_data_writer.cpp | 40 duckdb-0.2.7/duckdb/src/duckdb/src/storage/checkpoint_manager.cpp | 12 duckdb-0.2.7/duckdb/src/duckdb/src/storage/data_table.cpp | 830 duckdb-0.2.7/duckdb/src/duckdb/src/storage/index.cpp | 13 duckdb-0.2.7/duckdb/src/duckdb/src/storage/local_storage.cpp | 23 duckdb-0.2.7/duckdb/src/duckdb/src/storage/meta_block_writer.cpp | 7 duckdb-0.2.7/duckdb/src/duckdb/src/storage/numeric_segment.cpp | 64 duckdb-0.2.7/duckdb/src/duckdb/src/storage/single_file_block_manager.cpp | 8 duckdb-0.2.7/duckdb/src/duckdb/src/storage/statistics/base_statistics.cpp | 15 duckdb-0.2.7/duckdb/src/duckdb/src/storage/statistics/numeric_statistics.cpp | 61 duckdb-0.2.7/duckdb/src/duckdb/src/storage/statistics/segment_statistics.cpp | 28 duckdb-0.2.7/duckdb/src/duckdb/src/storage/statistics/string_statistics.cpp | 37 duckdb-0.2.7/duckdb/src/duckdb/src/storage/statistics/struct_statistics.cpp |only duckdb-0.2.7/duckdb/src/duckdb/src/storage/storage_info.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/storage/string_segment.cpp | 164 duckdb-0.2.7/duckdb/src/duckdb/src/storage/table/chunk_info.cpp | 30 duckdb-0.2.7/duckdb/src/duckdb/src/storage/table/column_data.cpp |only duckdb-0.2.7/duckdb/src/duckdb/src/storage/table/column_segment.cpp | 33 duckdb-0.2.7/duckdb/src/duckdb/src/storage/table/persistent_segment.cpp | 19 duckdb-0.2.7/duckdb/src/duckdb/src/storage/table/persistent_table_data.cpp | 1 duckdb-0.2.7/duckdb/src/duckdb/src/storage/table/row_group.cpp |only duckdb-0.2.7/duckdb/src/duckdb/src/storage/table/segment_tree.cpp | 5 duckdb-0.2.7/duckdb/src/duckdb/src/storage/table/standard_column_data.cpp | 193 duckdb-0.2.7/duckdb/src/duckdb/src/storage/table/struct_column_data.cpp |only duckdb-0.2.7/duckdb/src/duckdb/src/storage/table/transient_segment.cpp | 29 duckdb-0.2.7/duckdb/src/duckdb/src/storage/table/update_segment.cpp | 257 duckdb-0.2.7/duckdb/src/duckdb/src/storage/table/validity_column_data.cpp | 62 duckdb-0.2.7/duckdb/src/duckdb/src/storage/table/validity_segment.cpp | 287 duckdb-0.2.7/duckdb/src/duckdb/src/storage/uncompressed_segment.cpp | 282 duckdb-0.2.7/duckdb/src/duckdb/src/storage/wal_replay.cpp | 13 duckdb-0.2.7/duckdb/src/duckdb/src/storage/write_ahead_log.cpp | 9 duckdb-0.2.7/duckdb/src/duckdb/src/transaction/cleanup_state.cpp | 5 duckdb-0.2.7/duckdb/src/duckdb/src/transaction/commit_state.cpp | 34 duckdb-0.2.7/duckdb/src/duckdb/src/transaction/transaction.cpp | 2 duckdb-0.2.7/duckdb/src/duckdb/src/transaction/transaction_context.cpp | 12 duckdb-0.2.7/duckdb/src/duckdb/third_party/libpg_query/src_backend_parser_gram.cpp |16377 +++++----- duckdb-0.2.7/duckdb/src/include |only duckdb-0.2.7/duckdb/src/rapi.cpp |only duckdb-0.2.7/duckdb/src/register.cpp |only duckdb-0.2.7/duckdb/src/scan.cpp |only duckdb-0.2.7/duckdb/src/statement.cpp |only duckdb-0.2.7/duckdb/src/types.cpp |only duckdb-0.2.7/duckdb/src/utils.cpp |only duckdb-0.2.7/duckdb/tests/testthat.R | 4 duckdb-0.2.7/duckdb/tests/testthat/test_config_keyvalue.R |only duckdb-0.2.7/duckdb/tests/testthat/test_register_arrow.R |only 525 files changed, 17916 insertions(+), 14308 deletions(-)
Title: Random Over-Sampling Examples
Description: Functions to deal with binary classification
problems in the presence of imbalanced classes. Synthetic balanced samples are
generated according to ROSE (Menardi and Torelli, 2013).
Functions that implement more traditional remedies to the class imbalance
are also provided, as well as different metrics to evaluate a learner accuracy.
These are estimated by holdout, bootstrap or cross-validation methods.
Author: Nicola Lunardon, Giovanna Menardi, Nicola Torelli
Maintainer: Nicola Lunardon <nicola.lunardon@unimib.it>
Diff between ROSE versions 0.0-3 dated 2014-07-15 and 0.0-4 dated 2021-06-14
DESCRIPTION | 14 +++++++------- MD5 | 6 +++--- NAMESPACE | 5 ++++- man/ROSE-package.Rd | 37 ++++++++++++++++++------------------- 4 files changed, 32 insertions(+), 30 deletions(-)
Title: Bayesian Multivariate GARCH Models
Description: Fit Bayesian multivariate GARCH models using 'Stan' for full Bayesian inference. Generate (weighted) forecasts for means, variances (volatility) and correlations. Currently DCC(P,Q), CCC(P,Q), pdBEKK(P,Q), and BEKK(P,Q) parameterizations are implemented, based either on a multivariate gaussian normal or student-t distribution. DCC and CCC models are based on Engle (2002) <doi:10.1198/073500102288618487> and Bollerslev (1990) <doi:10.2307/2109358>. The BEKK parameterization follows Engle and Kroner (1995) <doi:10.1017/S0266466600009063> while the pdBEKK as well as the estimation approach for this package is described in Rast et al. (2020) <doi:10.31234/osf.io/j57pk>. The fitted models contain 'rstan' objects and can be examined with 'rstan' functions.
Author: Philippe Rast [aut, cre] (<https://orcid.org/0000-0003-3630-6629>),
Stephen Martin [aut] (<https://orcid.org/0000-0001-8085-2390>)
Maintainer: Philippe Rast <rast.ph@gmail.com>
Diff between bmgarch versions 1.0.0 dated 2020-09-17 and 1.0.1 dated 2021-06-14
DESCRIPTION | 24 + MD5 | 25 +- NEWS.md |only R/bmgarch.R | 2 R/forecasting_gq.R | 4 R/lfocv.R | 37 +- R/model_weights.R | 30 -- README.md | 593 +++++++++++++++++++++++++++++------------------- build/partial.rdb |binary man/bmgarch.Rd | 2 man/fitted.bmgarch.Rd | 2 man/forecast.bmgarch.Rd | 2 man/loo.bmgarch.Rd | 6 man/model_weights.Rd | 5 14 files changed, 440 insertions(+), 292 deletions(-)
More information about patientProfilesVis at CRAN
Permanent link
Title: Parameter Optimizing of ODE-Systems
Description: Enable optimization of parameters of ordinary differential equations. Therefore, using 'SUNDIALS' to solve the ODE-System (see Hindmarsh, Alan C., Peter N. Brown, Keith E. Grant, Steven L. Lee, Radu Serban, Dan E. Shumaker, and Carol S. Woodward. (2005) <doi:10.1145/1089014.1089020>). Furthermore, for optimization the particle swarm algorithm is used (see: Akman, Devin, Olcay Akman, and Elsa Schaefer. (2018) <doi:10.1155/2018/9160793> and Sengupta, Saptarshi, Sanchita Basak, and Richard Peters. (2018) <doi:10.3390/make1010010>). The ODE-System has to be passed as 'Rcpp'-function. The information for the parameter boundaries and states are conveyed using data.frames.
Author: Krämer Konrad [aut, cre],
Krämer Johannes [aut],
Heyer Arnd [ths],
University of Stuttgart [uvp],
Institute of Biomaterials and Biomolecular Systems at the University of Stuttgart [his]
| file AUTHORS
Maintainer: Krämer Konrad <Konrad_kraemer@yahoo.de>
Diff between paropt versions 0.2 dated 2021-05-31 and 0.2.1 dated 2021-06-14
paropt-0.2.1/paropt/DESCRIPTION | 6 paropt-0.2.1/paropt/MD5 | 19 + paropt-0.2.1/paropt/build/vignette.rds |binary paropt-0.2.1/paropt/cleanup |only paropt-0.2.1/paropt/configure |only paropt-0.2.1/paropt/configure.ac |only paropt-0.2.1/paropt/inst/doc/paropt.html | 104 +++++----- paropt-0.2.1/paropt/inst/include/header.hpp | 4 paropt-0.2.1/paropt/inst/include/optimizer_Rcpp_interface_Mac.hpp |only paropt-0.2.1/paropt/src/Makevars.in |only paropt-0.2.1/paropt/src/Makevars.win | 10 paropt-0.2.1/paropt/src/optimizer_Rcpp_interface.cpp | 2 paropt-0.2.1/paropt/src/optimizer_Rcpp_interface_Mac.cpp |only paropt-0.2/paropt/src/Makevars |only 14 files changed, 76 insertions(+), 69 deletions(-)
Title: Missing Data Imputation Using Gaussian Copulas
Description: Provides functions to impute missing values using Gaussian
copulas for mixed data types as described by Christoffersen et al.
(2021) <arXiv:2102.02642>. The method is related to Hoff (2007)
<doi:10.1214/07-AOAS107> and Zhao and Udell (2019) <arXiv:1910.12845>
but differs by making a direct approximation of the log marginal likelihood
using an extended version of the Fortran code created by Genz and Bretz
(2002) <doi:10.1198/106186002394> in addition to also support multinomial
variables.
Author: Benjamin Christoffersen [cre, aut]
(<https://orcid.org/0000-0002-7182-1346>),
Alan Genz [cph],
Frank Bretz [cph],
Torsten Hothorn [cph],
R-core [cph],
Ross Ihaka [cph]
Maintainer: Benjamin Christoffersen <boennecd@gmail.com>
Diff between mdgc versions 0.1.4 dated 2021-03-12 and 0.1.5 dated 2021-06-14
DESCRIPTION | 7 MD5 | 42 ++-- NEWS |only man/figures/README-mult_sim-2.png |binary man/figures/README-mult_sim-3.png |binary man/figures/README-mult_sim-4.png |binary man/figures/README-mult_sim-5.png |binary man/figures/README-mult_sim-6.png |binary man/figures/README-mult_sim-7.png |binary man/figures/README-sim_dat-2.png |binary man/figures/README-sim_dat-3.png |binary src/kahan.h |only src/new-mvt.h | 70 +++--- src/norm-cdf-approx.cpp | 47 ---- src/norm-cdf-approx.h | 96 +++++++++ src/restrict-cdf.h | 332 +++++++++++++++++++------------- src/test-restrict-cdf.cpp | 14 - tests/testthat/mdgc-man-Lagran-test.RDS |binary tests/testthat/mdgc-man-test.RDS |binary tests/testthat/mdgc_fit-ADAM-res.RDS |binary tests/testthat/mdgc_fit-SVRG-res.RDS |binary tests/testthat/test-man-files.R | 4 tests/testthat/test-mdgc-impute.R | 1 23 files changed, 370 insertions(+), 243 deletions(-)
More information about ManagedCloudProvider at CRAN
Permanent link
Title: Install Packages from Snapshots on the Checkpoint Server for
Reproducibility
Description: The goal of checkpoint is to solve the problem of package
reproducibility in R. Specifically, checkpoint allows you to install packages
as they existed on CRAN on a specific snapshot date as if you had a CRAN time
machine. To achieve reproducibility, the checkpoint() function installs the
packages required or called by your project and scripts to a local library
exactly as they existed at the specified point in time. Only those packages
are available to your project, thereby avoiding any package updates that came
later and may have altered your results. In this way, anyone using checkpoint's
checkpoint() can ensure the reproducibility of your scripts or projects at any
time. To create the snapshot archives, once a day (at midnight UTC) Microsoft
refreshes the Austria CRAN mirror on the "Microsoft R Archived Network"
server (<https://mran.microsoft.com/>). Immediately after completion
of the rsync mirror process, the process takes a snapshot, thus creating the
archive. Snapshot archives exist starting from 2014-09-17.
Author: James Rowland-Jones [cre],
Hong Ooi [aut],
Andrie de Vries [aut],
Gábor Csárdi [ctb] (Assistance with pkgdepends),
Microsoft [aut, cph]
Maintainer: James Rowland-Jones <jrj@microsoft.com>
Diff between checkpoint versions 0.4.10 dated 2020-10-29 and 1.0.0 dated 2021-06-14
checkpoint-0.4.10/checkpoint/R/access_date.R |only checkpoint-0.4.10/checkpoint/R/checkpoint_internals.R |only checkpoint-0.4.10/checkpoint/R/checkpoint_log.R |only checkpoint-0.4.10/checkpoint/R/checkpoint_paths.R |only checkpoint-0.4.10/checkpoint/R/checkpoint_remove.R |only checkpoint-0.4.10/checkpoint/R/detach.R |only checkpoint-0.4.10/checkpoint/R/installMissingBasePackages.R |only checkpoint-0.4.10/checkpoint/R/mock-install-packages.R |only checkpoint-0.4.10/checkpoint/R/mranUrl.R |only checkpoint-0.4.10/checkpoint/R/scanRepoPackages.R |only checkpoint-0.4.10/checkpoint/R/setSnapshot.R |only checkpoint-0.4.10/checkpoint/R/test-common-functions.R |only checkpoint-0.4.10/checkpoint/inst/doc/managing-checkpoint-archives.Rmd |only checkpoint-0.4.10/checkpoint/inst/doc/managing-checkpoint-archives.html |only checkpoint-0.4.10/checkpoint/inst/examples/example_checkpoint.R |only checkpoint-0.4.10/checkpoint/inst/examples/example_mranurl.R |only checkpoint-0.4.10/checkpoint/inst/examples/example_remove.R |only checkpoint-0.4.10/checkpoint/inst/examples/example_setSnapshot.R |only checkpoint-0.4.10/checkpoint/inst/img |only checkpoint-0.4.10/checkpoint/man/checkpointArchives.Rd |only checkpoint-0.4.10/checkpoint/man/checkpointRemove.Rd |only checkpoint-0.4.10/checkpoint/man/getAccessDate.Rd |only checkpoint-0.4.10/checkpoint/man/getValidSnapshots.Rd |only checkpoint-0.4.10/checkpoint/man/mranUrl.Rd |only checkpoint-0.4.10/checkpoint/man/scanForPackages.Rd |only checkpoint-0.4.10/checkpoint/man/setSnapshot.Rd |only checkpoint-0.4.10/checkpoint/man/unCheckpoint.Rd |only checkpoint-0.4.10/checkpoint/tests/localMRAN |only checkpoint-0.4.10/checkpoint/tests/test-all.R |only checkpoint-0.4.10/checkpoint/tests/testthat/helper.R |only checkpoint-0.4.10/checkpoint/tests/testthat/test-0-is-404.R |only checkpoint-0.4.10/checkpoint/tests/testthat/test-0-snapshots.R |only checkpoint-0.4.10/checkpoint/tests/testthat/test-1-scan.R |only checkpoint-0.4.10/checkpoint/tests/testthat/test-2-snapshot-dates.R |only checkpoint-0.4.10/checkpoint/tests/testthat/test-3-checkpoint.R |only checkpoint-0.4.10/checkpoint/tests/testthat/test-4-mranUrl.R |only checkpoint-0.4.10/checkpoint/tests/testthat/test-5-search-detach.R |only checkpoint-0.4.10/checkpoint/tests/testthat/test-6-accessdate.R |only checkpoint-0.4.10/checkpoint/tests/testthat/test-7-anyRfiles.R |only checkpoint-0.4.10/checkpoint/tests/testthat/test-8-authoriseFileSystemUse.R |only checkpoint-0.4.10/checkpoint/vignettes/archive |only checkpoint-0.4.10/checkpoint/vignettes/managing-checkpoint-archives.Rmd |only checkpoint-1.0.0/checkpoint/DESCRIPTION | 25 checkpoint-1.0.0/checkpoint/MD5 | 95 -- checkpoint-1.0.0/checkpoint/NAMESPACE | 26 checkpoint-1.0.0/checkpoint/NEWS.md | 21 checkpoint-1.0.0/checkpoint/R/checkpoint-package.R | 38 checkpoint-1.0.0/checkpoint/R/checkpoint.R | 429 ++++------ checkpoint-1.0.0/checkpoint/R/create_snapshot_dir.R |only checkpoint-1.0.0/checkpoint/R/fixRstudioBug.R | 201 ++-- checkpoint-1.0.0/checkpoint/R/get_confirmation.R |only checkpoint-1.0.0/checkpoint/R/install_pkgs.R |only checkpoint-1.0.0/checkpoint/R/mran_utils.R |only checkpoint-1.0.0/checkpoint/R/scan_project_files.R |only checkpoint-1.0.0/checkpoint/R/zzz.R | 23 checkpoint-1.0.0/checkpoint/README.md | 188 +--- checkpoint-1.0.0/checkpoint/build/vignette.rds |binary checkpoint-1.0.0/checkpoint/inst/doc/checkpoint.Rmd | 165 +-- checkpoint-1.0.0/checkpoint/inst/doc/checkpoint.html | 216 ++--- checkpoint-1.0.0/checkpoint/inst/examples/example_checkpoint.Rex |only checkpoint-1.0.0/checkpoint/inst/examples/example_mran.Rex |only checkpoint-1.0.0/checkpoint/man/checkpoint-package.Rd | 29 checkpoint-1.0.0/checkpoint/man/checkpoint.Rd | 178 ++-- checkpoint-1.0.0/checkpoint/man/mran.Rd |only checkpoint-1.0.0/checkpoint/man/scan_project_files.Rd |only checkpoint-1.0.0/checkpoint/tests/project |only checkpoint-1.0.0/checkpoint/tests/project_mft |only checkpoint-1.0.0/checkpoint/tests/testthat.R |only checkpoint-1.0.0/checkpoint/tests/testthat/setup.R |only checkpoint-1.0.0/checkpoint/tests/testthat/test01_scan.R |only checkpoint-1.0.0/checkpoint/tests/testthat/test02a_checkpoint1.R |only checkpoint-1.0.0/checkpoint/tests/testthat/test02b_checkpoint2.R |only checkpoint-1.0.0/checkpoint/tests/testthat/test03_mran.R |only checkpoint-1.0.0/checkpoint/tests/testthat/test04_checkpoint_mft.R |only checkpoint-1.0.0/checkpoint/tests/testthat/test05_checkpoint_rver.R |only checkpoint-1.0.0/checkpoint/tests/testthat/test06_checkpoint_src.R |only checkpoint-1.0.0/checkpoint/vignettes/checkpoint.Rmd | 165 +-- 77 files changed, 839 insertions(+), 960 deletions(-)
Title: Adrian Dusa's Miscellaneous
Description: Contains functions used across packages 'declared', 'DDIwR', 'mixed', 'QCA'
and 'venn'. Interprets and translates, factorizes and negates SOP - Sum of Products
expressions, for both binary and multi-value crisp sets, and extracts information
(set names, set values) from those expressions. Other functions perform various
other checks if possibly numeric (even if all numbers reside in a character vector)
and coerce to numeric, or check if the numbers are whole. It also offers, among
many others, a highly flexible recoding routine.
Author: Adrian Dusa [aut, cre, cph] (<https://orcid.org/0000-0002-3525-9253>)
Maintainer: Adrian Dusa <dusa.adrian@unibuc.ro>
Diff between admisc versions 0.15 dated 2021-05-31 and 0.16 dated 2021-06-14
DESCRIPTION | 12 ++++++------ MD5 | 23 +++++++++++++---------- NAMESPACE | 4 ++++ R/asNumeric.R | 2 +- R/equality.R | 21 ++++++++++++++++++--- R/getName.R |only R/onLoad.R |only R/possibleNumeric.R | 4 ++-- R/recode.R | 29 +++++++++++++++++++++++------ build/partial.rdb |binary inst/ChangeLog | 7 +++++++ man/admisc.package.Rd | 4 ++-- man/equality.Rd | 32 ++++++++++++++++++++++++-------- man/getName.Rd |only 14 files changed, 100 insertions(+), 38 deletions(-)
Title: Classes for Relational Data
Description: Tools to create and modify network objects. The network class can represent a range of relational data types, and supports arbitrary vertex/edge/graph attributes.
Author: Carter T. Butts [aut, cre],
David Hunter [ctb],
Mark Handcock [ctb],
Skye Bender-deMoll [ctb],
Jeffrey Horner [ctb],
Li Wang [ctb],
Pavel N. Krivitsky [ctb] (<https://orcid.org/0000-0002-9101-3362>),
Brendan Knapp [ctb] (<https://orcid.org/0000-0003-3284-4972>),
Michał Bojanowski [ctb],
Chad Klumb [ctb]
Maintainer: Carter T. Butts <buttsc@uci.edu>
Diff between network versions 1.17.0 dated 2021-06-07 and 1.17.1 dated 2021-06-14
ChangeLog | 3 +++ DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- NAMESPACE | 2 +- R/coercion.R | 21 +++++++++++++-------- R/constructors.R | 12 ++++++------ R/misc.R | 25 ++++--------------------- inst/CITATION | 12 ++++++------ inst/doc/networkVignette.pdf |binary 9 files changed, 46 insertions(+), 55 deletions(-)
Title: Interactive Statistical Data Visualization
Description: An extendable toolkit for interactive data visualization and exploration.
Author: Adrian Waddell [aut],
R. Wayne Oldford [aut, cre, ths],
Zehao Xu [ctb],
Martin Gauch [ctb]
Maintainer: R. Wayne Oldford <rwoldford@uwaterloo.ca>
Diff between loon versions 1.3.6 dated 2021-05-10 and 1.3.7 dated 2021-06-14
DESCRIPTION | 6 +- MD5 | 37 +++++++------ NAMESPACE | 1 NEWS.md | 10 +++ R/facet_layout.R | 38 ++------------ R/l_ColorList.R | 84 +++++++++++++++++++++++++++++++ R/l_getScaledData.R | 22 +++++++- R/l_help.R | 2 R/loonGrob.R | 66 ++++++++++++++++++------ build/vignette.rds |binary inst/doc/introduction.html | 4 - inst/doc/logicalQueries.Rmd | 2 inst/doc/logicalQueries.html | 8 +- inst/doc/minorities.R |only inst/doc/minorities.Rmd |only inst/doc/minorities.html |only inst/doc/teaching-example-smoothing.html | 4 - man/condGrob.Rd | 2 man/l_colorName.Rd |only man/l_help.Rd | 2 vignettes/logicalQueries.Rmd | 2 vignettes/minorities.Rmd |only 22 files changed, 206 insertions(+), 84 deletions(-)
Title: Deriving Expressions of Joint Interventional Distributions and
Transport Formulas in Causal Models
Description: Functions for identification and transportation of causal effects.
Provides a conditional causal effect identification algorithm (IDC) by
Shpitser, I. and Pearl, J. (2006)
<http://ftp.cs.ucla.edu/pub/stat_ser/r329-uai.pdf>, an algorithm for
transportability from multiple domains with limited experiments by
Bareinboim, E. and Pearl, J. (2014)
<http://ftp.cs.ucla.edu/pub/stat_ser/r443.pdf> and a selection bias recovery
algorithm by Bareinboim, E. and Tian, J. (2015)
<http://ftp.cs.ucla.edu/pub/stat_ser/r445.pdf>. All of the previously mentioned
algorithms are based on a causal effect identification algorithm by
Tian , J. (2002) <http://ftp.cs.ucla.edu/pub/stat_ser/r309.pdf>.
Author: Santtu Tikka [aut, cre] (<https://orcid.org/0000-0003-4039-4342>)
Maintainer: Santtu Tikka <santtuth@gmail.com>
Diff between causaleffect versions 1.3.12 dated 2021-01-12 and 1.3.13 dated 2021-06-14
DESCRIPTION | 22 ++++++++++++++++------ MD5 | 16 ++++++++-------- NEWS | 3 +++ R/idc.R | 8 ++++---- build/vignette.rds |binary inst/doc/causaleffect.ltx | 2 +- inst/doc/causaleffect.pdf |binary inst/doc/simplification.pdf |binary vignettes/causaleffect.ltx | 2 +- 9 files changed, 33 insertions(+), 20 deletions(-)
Title: Utility Functions for 'spatstat'
Description: Contains utility functions for the 'spatstat' family of packages
which may also be useful for other purposes.
Author: Adrian Baddeley [aut, cre] (<https://orcid.org/0000-0001-9499-8382>),
Rolf Turner [aut] (<https://orcid.org/0000-0001-5521-5218>),
Ege Rubak [aut] (<https://orcid.org/0000-0002-6675-533X>)
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.utils versions 2.1-0 dated 2021-03-15 and 2.2-0 dated 2021-06-14
DESCRIPTION | 9 +-- MD5 | 27 ++++++----- NAMESPACE | 1 NEWS | 17 ++++++- R/formulae.R | 8 +-- R/utilseq.R | 33 +++++++++++++- R/xysegment.R | 86 +++++++++++++++---------------------- inst/doc/packagesizes.txt | 1 man/exactCutBreaks.Rd |only man/spatstat.utils-internal.Rd | 2 src/distseg.c | 95 +++++------------------------------------ src/distseg.h |only src/init.c | 1 src/proto.h | 3 - tests/fmla.R |only tests/numerical.R | 6 ++ 16 files changed, 133 insertions(+), 156 deletions(-)
More information about spatstat.utils at CRAN
Permanent link
Title: Classes and Methods for Spatio-Temporal Data
Description: Classes and methods for spatio-temporal data, including space-time regular lattices, sparse lattices, irregular data, and trajectories; utility functions for plotting data as map sequences (lattice or animation) or multiple time series; methods for spatial and temporal selection and subsetting, as well as for spatial/temporal/spatio-temporal matching or aggregation, retrieving coordinates, print, summary, etc.
Author: Edzer Pebesma [aut, cre] (<https://orcid.org/0000-0001-8049-7069>),
Benedikt Graeler [ctb],
Tom Gottfried [ctb],
Robert J. Hijmans [ctb]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between spacetime versions 1.2-4 dated 2021-01-25 and 1.2-5 dated 2021-06-14
spacetime-1.2-4/spacetime/demo/trip.R |only spacetime-1.2-5/spacetime/DESCRIPTION | 12 spacetime-1.2-5/spacetime/MD5 | 33 - spacetime-1.2-5/spacetime/R/STFDF-methods.R | 6 spacetime-1.2-5/spacetime/build/vignette.rds |binary spacetime-1.2-5/spacetime/data/air.rda |binary spacetime-1.2-5/spacetime/data/fires.rda |binary spacetime-1.2-5/spacetime/demo/00Index | 1 spacetime-1.2-5/spacetime/inst/doc/jss816.R | 29 - spacetime-1.2-5/spacetime/inst/doc/jss816.Rnw | 21 - spacetime-1.2-5/spacetime/inst/doc/jss816.pdf |binary spacetime-1.2-5/spacetime/inst/doc/stgvis.html | 327 +++++++++++------- spacetime-1.2-5/spacetime/inst/doc/sto.pdf |binary spacetime-1.2-5/spacetime/inst/doc/stpg.pdf |binary spacetime-1.2-5/spacetime/inst/doc/stsubs.pdf |binary spacetime-1.2-5/spacetime/tests/basic.Rout.save | 10 spacetime-1.2-5/spacetime/tests/stconstruct.Rout.save | 10 spacetime-1.2-5/spacetime/vignettes/jss816.Rnw | 21 - 18 files changed, 276 insertions(+), 194 deletions(-)
Title: Forecasting Using State Space Models
Description: Functions implementing Single Source of Error state space models for purposes of time series analysis and forecasting.
The package includes ADAM (Svetunkov, 2021, <https://openforecast.org/adam/>),
Exponential Smoothing (Hyndman et al., 2008, <doi: 10.1007/978-3-540-71918-2>),
SARIMA (Svetunkov & Boylan, 2019 <doi: 10.1080/00207543.2019.1600764>),
Complex Exponential Smoothing (Svetunkov & Kourentzes, 2018, <doi: 10.13140/RG.2.2.24986.29123>),
Simple Moving Average (Svetunkov & Petropoulos, 2018 <doi: 10.1080/00207543.2017.1380326>)
and several simulation functions. It also allows dealing with intermittent demand based on the
iETS framework (Svetunkov & Boylan, 2019, <doi: 10.13140/RG.2.2.35897.06242>).
Author: Ivan Svetunkov [aut, cre] (Lecturer at Centre for Marketing Analytics
and Forecasting, Lancaster University, UK)
Maintainer: Ivan Svetunkov <ivan@svetunkov.ru>
Diff between smooth versions 3.1.1 dated 2021-04-17 and 3.1.2 dated 2021-06-14
DESCRIPTION | 8 MD5 | 94 +- NEWS | 37 + R/RcppExports.R | 8 R/adam.R | 260 +++++-- R/adamGeneral.R | 17 R/autoadam.R | 56 - R/autoces.R | 5 R/automsarima.R | 8 R/autossarima.R | 8 R/ces.R | 4 R/es.R | 16 R/gum.R | 12 R/methods.R | 101 ++ R/oesg.R | 12 R/simoes.R | 4 R/smooth-package.R | 3 R/ssarima.R | 14 R/ssfunctions.R | 8 README.md | 9 build/partial.rdb |binary build/vignette.rds |binary inst/doc/adam.html | 1716 ++++++++++++++++++++++--------------------------- inst/doc/ces.html | 265 +------ inst/doc/es.html | 367 ++-------- inst/doc/gum.html | 246 +------ inst/doc/oes.html | 430 +++--------- inst/doc/simulate.html | 440 +++--------- inst/doc/sma.html | 234 ------ inst/doc/smooth.Rmd | 55 - inst/doc/smooth.html | 208 ----- inst/doc/ssarima.html | 303 ++------ man/adam.Rd | 21 man/auto.ces.Rd | 5 man/auto.msarima.Rd | 8 man/auto.ssarima.Rd | 8 man/ces.Rd | 4 man/es.Rd | 16 man/gum.Rd | 12 man/plot.smooth.Rd | 15 man/sim.oes.Rd | 4 man/smooth.Rd | 3 man/ssarima.Rd | 14 src/Makevars | 1 src/Makevars.win | 1 src/RcppExports.cpp | 82 +- src/adamGeneral.cpp | 213 +----- vignettes/smooth.Rmd | 55 - 48 files changed, 2059 insertions(+), 3351 deletions(-)