Title: Access the Bioconductor Project Package Repository
Description: A convenient tool to install and update Bioconductor packages.
Author: Martin Morgan [aut] (<https://orcid.org/0000-0002-5874-8148>),
Marcel Ramos [ctb, cre] (<https://orcid.org/0000-0002-3242-0582>)
Maintainer: Marcel Ramos <marcel.ramos@roswellpark.org>
Diff between BiocManager versions 1.30.15 dated 2021-05-11 and 1.30.16 dated 2021-06-15
DESCRIPTION | 6 +-- MD5 | 16 ++++----- NEWS | 9 +++++ R/install.R | 12 ++++--- R/version.R | 2 - build/vignette.rds |binary inst/doc/BiocManager.html | 4 +- tests/testthat/test_install.R | 69 ++++++++++++++++++++++++++++++++++++++++++ tests/testthat/test_version.R | 11 ++++++ 9 files changed, 110 insertions(+), 19 deletions(-)
Title: Merge-Split Samplers for Conjugate Bayesian Nonparametric Models
Description: Markov chain Monte Carlo samplers for posterior simulations of conjugate Bayesian nonparametric
mixture models. Functionality is provided for Gibbs sampling as in Algorithm 3 of Neal (2000)
<DOI:10.1080/10618600.2000.10474879>, restricted Gibbs merge-split sampling as described in Jain & Neal
(2004) <DOI:10.1198/1061860043001>, and sequentially-allocated merge-split sampling, as well as
summary and utility functions.
Author: Spencer Newcomb [aut],
David B. Dahl [ctb, cre] (<https://orcid.org/0000-0002-8173-1547>)
Maintainer: David B. Dahl <dahl@stat.byu.edu>
Diff between sams versions 0.4.0 dated 2020-08-26 and 0.4.2 dated 2021-06-15
DESCRIPTION | 11 ++++++----- MD5 | 12 ++++++++++-- NEWS | 3 +++ R/data.R |only data |only man/p18_bern.Rd |only man/p18_corr_mvn.Rd |only man/p18_mvn.Rd |only man/p6_bern.Rd |only man/p6_big_bern.Rd |only man/p6_mvn.Rd |only 11 files changed, 19 insertions(+), 7 deletions(-)
Title: Supporting Functions for Packages Maintained by 'Yihui Xie'
Description: Miscellaneous functions commonly used in other packages maintained by 'Yihui Xie'.
Author: Yihui Xie [aut, cre, cph] (<https://orcid.org/0000-0003-0645-5666>),
Wush Wu [ctb],
Daijiang Li [ctb],
Xianying Tan [ctb],
Salim Brüggemann [ctb] (<https://orcid.org/0000-0002-5329-5987>),
Christophe Dervieux [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between xfun versions 0.23 dated 2021-05-15 and 0.24 dated 2021-06-15
DESCRIPTION | 6 +++--- MD5 | 23 ++++++++++++----------- NAMESPACE | 1 + NEWS.md | 6 ++++++ R/base64.R | 4 ++-- R/packages.R | 28 +++++++++++++++++++++++----- R/paths.R | 2 +- R/revcheck.R | 2 +- build/vignette.rds |binary inst/doc/xfun.html | 10 +++++----- man/broken_packages.Rd |only man/rstudio_type.Rd | 2 +- tests/testit/test-paths.R | 19 +++++++++++++++++++ 13 files changed, 74 insertions(+), 29 deletions(-)
Title: Qualitative Comparative Analysis
Description: An extensive set of functions to perform Qualitative Comparative Analysis:
crisp sets ('csQCA'), temporal ('tQCA'), multi-value ('mvQCA')
and fuzzy sets ('fsQCA'), using a GUI - graphical user interface.
'QCA' is a methodology that bridges the qualitative and quantitative divide
in social science research. It uses a Boolean algorithm, resulting in a
minimal causal configuration that explains a given phenomenon.
Author: Adrian Dusa [aut, cre, cph] (<https://orcid.org/0000-0002-3525-9253>),
Ciprian Paduraru [ctb] (<https://orcid.org/0000-0002-4518-374X>),
jQuery Foundation [cph] (jQuery library and jQuery UI library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/gui/www/lib/jquery-AUTHORS.txt),
lp_solve [cph] (http://lpsolve.sourceforge.net),
Vasil Dinkov [ctb, cph] (jquery.smartmenus.js library),
Dmitry Baranovskiy [ctb, cph] (raphael.js library),
Emmanuel Quentin [ctb, cph] (raphael.inline_text_editing.js library),
Jimmy Breck-McKye [ctb, cph] (raphael-paragraph.js library),
Alrik Thiem [aut] (from version 1.0-0 up to version 1.1-3)
Maintainer: Adrian Dusa <dusa.adrian@unibuc.ro>
Diff between QCA versions 3.11 dated 2021-01-21 and 3.12 dated 2021-06-15
QCA-3.11/QCA/data/CVF.tab |only QCA-3.11/QCA/data/CVR.tab |only QCA-3.11/QCA/data/Emme.tab |only QCA-3.11/QCA/data/HC.tab |only QCA-3.11/QCA/data/Krook.tab |only QCA-3.11/QCA/data/LC.tab |only QCA-3.11/QCA/data/LF.tab |only QCA-3.11/QCA/data/LM.tab |only QCA-3.11/QCA/data/LR.tab |only QCA-3.11/QCA/data/NF.tab |only QCA-3.11/QCA/data/Quine.tab |only QCA-3.11/QCA/data/RS.tab |only QCA-3.11/QCA/data/RagStr.tab |only QCA-3.11/QCA/data/Rokkan.tab |only QCA-3.11/QCA/data/d.AS.tab |only QCA-3.11/QCA/data/d.BWB.tab |only QCA-3.11/QCA/data/d.Bas.tab |only QCA-3.11/QCA/data/d.CS.tab |only QCA-3.11/QCA/data/d.CZH.tab |only QCA-3.11/QCA/data/d.Emm.tab |only QCA-3.11/QCA/data/d.HMN.tab |only QCA-3.11/QCA/data/d.Kil.tab |only QCA-3.11/QCA/data/d.Kro.tab |only QCA-3.11/QCA/data/d.RS.tab |only QCA-3.11/QCA/data/d.SA.tab |only QCA-3.11/QCA/data/d.SS.tab |only QCA-3.11/QCA/data/d.autonomy.tab |only QCA-3.11/QCA/data/d.biodiversity.tab |only QCA-3.11/QCA/data/d.educate.tab |only QCA-3.11/QCA/data/d.education.tab |only QCA-3.11/QCA/data/d.graduate.tab |only QCA-3.11/QCA/data/d.health.tab |only QCA-3.11/QCA/data/d.homeless.tab |only QCA-3.11/QCA/data/d.jobsecurity.tab |only QCA-3.11/QCA/data/d.napoleon.tab |only QCA-3.11/QCA/data/d.pban.tab |only QCA-3.11/QCA/data/d.represent.tab |only QCA-3.11/QCA/data/d.socialsecurity.tab |only QCA-3.11/QCA/data/d.stakeholder.tab |only QCA-3.11/QCA/data/d.transport.tab |only QCA-3.11/QCA/data/d.urban.tab |only QCA-3.11/QCA/data/d.women.tab |only QCA-3.12/QCA/DESCRIPTION | 10 QCA-3.12/QCA/MD5 | 188 ++++++------- QCA-3.12/QCA/NAMESPACE | 1 QCA-3.12/QCA/R/XYplot.R | 110 +++---- QCA-3.12/QCA/R/fuzzyand.R | 2 QCA-3.12/QCA/R/fuzzyor.R | 2 QCA-3.12/QCA/R/getSolution.R | 18 + QCA-3.12/QCA/R/minimize.R | 50 ++- QCA-3.12/QCA/R/pof.R | 57 ++- QCA-3.12/QCA/R/print.R | 12 QCA-3.12/QCA/R/string.R | 67 ---- QCA-3.12/QCA/R/truthTable.R | 27 + QCA-3.12/QCA/build/partial.rdb |binary QCA-3.12/QCA/data/CVF.tab.gz |only QCA-3.12/QCA/data/CVR.tab.gz |only QCA-3.12/QCA/data/Emme.tab.gz |only QCA-3.12/QCA/data/HC.tab.gz |only QCA-3.12/QCA/data/HarKem.RData |binary QCA-3.12/QCA/data/Krook.tab.gz |only QCA-3.12/QCA/data/LC.tab.gz |only QCA-3.12/QCA/data/LF.tab.bz2 |only QCA-3.12/QCA/data/LM.tab.gz |only QCA-3.12/QCA/data/LR.tab.gz |only QCA-3.12/QCA/data/NF.tab.gz |only QCA-3.12/QCA/data/Quine.tab.gz |only QCA-3.12/QCA/data/RS.tab.gz |only QCA-3.12/QCA/data/RagStr.tab.gz |only QCA-3.12/QCA/data/Rokkan.tab.gz |only QCA-3.12/QCA/data/d.AS.tab.gz |only QCA-3.12/QCA/data/d.BWB.tab.bz2 |only QCA-3.12/QCA/data/d.Bas.tab.bz2 |only QCA-3.12/QCA/data/d.CS.tab.gz |only QCA-3.12/QCA/data/d.CZH.tab.gz |only QCA-3.12/QCA/data/d.Emm.tab.bz2 |only QCA-3.12/QCA/data/d.HK.RData |binary QCA-3.12/QCA/data/d.HMN.tab.gz |only QCA-3.12/QCA/data/d.Kil.tab.gz |only QCA-3.12/QCA/data/d.Kro.tab.gz |only QCA-3.12/QCA/data/d.RS.tab.gz |only QCA-3.12/QCA/data/d.SA.tab.gz |only QCA-3.12/QCA/data/d.SS.tab.gz |only QCA-3.12/QCA/data/d.autonomy.tab.bz2 |only QCA-3.12/QCA/data/d.biodiversity.tab.bz2 |only QCA-3.12/QCA/data/d.educate.tab.gz |only QCA-3.12/QCA/data/d.education.tab.gz |only QCA-3.12/QCA/data/d.graduate.tab.gz |only QCA-3.12/QCA/data/d.health.tab.bz2 |only QCA-3.12/QCA/data/d.homeless.tab.gz |only QCA-3.12/QCA/data/d.jobsecurity.tab.bz2 |only QCA-3.12/QCA/data/d.napoleon.tab.gz |only QCA-3.12/QCA/data/d.partybans.RData |binary QCA-3.12/QCA/data/d.pban.tab.gz |only QCA-3.12/QCA/data/d.represent.tab.gz |only QCA-3.12/QCA/data/d.socialsecurity.tab.gz |only QCA-3.12/QCA/data/d.stakeholder.tab.gz |only QCA-3.12/QCA/data/d.transport.tab.gz |only QCA-3.12/QCA/data/d.urban.tab.gz |only QCA-3.12/QCA/data/d.women.tab.gz |only QCA-3.12/QCA/inst/ChangeLog | 14 QCA-3.12/QCA/inst/TODO | 4 QCA-3.12/QCA/inst/gui/www/js/maincode.js | 2 QCA-3.12/QCA/inst/staticdocs/CV.html | 4 QCA-3.12/QCA/inst/staticdocs/LegacyDatasets.html | 4 QCA-3.12/QCA/inst/staticdocs/Lipset.html | 4 QCA-3.12/QCA/inst/staticdocs/QCA.package.html | 8 QCA-3.12/QCA/inst/staticdocs/RS.html | 4 QCA-3.12/QCA/inst/staticdocs/SOPexpressions.html | 4 QCA-3.12/QCA/inst/staticdocs/XYplot.html | 4 QCA-3.12/QCA/inst/staticdocs/Xplot.html | 4 QCA-3.12/QCA/inst/staticdocs/calibrate.html | 4 QCA-3.12/QCA/inst/staticdocs/causalChain.html | 4 QCA-3.12/QCA/inst/staticdocs/chartFunctions.html | 4 QCA-3.12/QCA/inst/staticdocs/export.html | 4 QCA-3.12/QCA/inst/staticdocs/factorize.html | 4 QCA-3.12/QCA/inst/staticdocs/findRows.html | 4 QCA-3.12/QCA/inst/staticdocs/findTh.html | 4 QCA-3.12/QCA/inst/staticdocs/fuzzyops.html | 4 QCA-3.12/QCA/inst/staticdocs/generate.html | 4 QCA-3.12/QCA/inst/staticdocs/implicantMatrixFunctions.html | 4 QCA-3.12/QCA/inst/staticdocs/index.html | 4 QCA-3.12/QCA/inst/staticdocs/intersection.html | 4 QCA-3.12/QCA/inst/staticdocs/minimize.html | 4 QCA-3.12/QCA/inst/staticdocs/modelFit.html | 4 QCA-3.12/QCA/inst/staticdocs/negate.html | 4 QCA-3.12/QCA/inst/staticdocs/pof.html | 4 QCA-3.12/QCA/inst/staticdocs/recode.html | 4 QCA-3.12/QCA/inst/staticdocs/retention.html | 4 QCA-3.12/QCA/inst/staticdocs/runGUI.html | 4 QCA-3.12/QCA/inst/staticdocs/subsetsAndSupersets.html | 4 QCA-3.12/QCA/inst/staticdocs/truthTable.html | 4 QCA-3.12/QCA/man/QCA-internal.Rd | 1 QCA-3.12/QCA/man/QCA.package.Rd | 4 QCA-3.12/QCA/man/minimize.Rd | 12 QCA-3.12/QCA/src/QCA.c | 32 -- QCA-3.12/QCA/src/consistency.c | 2 137 files changed, 358 insertions(+), 377 deletions(-)
Title: The Acute COPD Exacerbation Prediction Tool (ACCEPT)
Description: Allows clinicians to predict the rate and severity of future acute exacerbation in Chronic Obstructive Pulmonary Disease (COPD) patients, based on the clinical prediction model published in Adibi et al. (2020) <doi:10.1016/S2213-2600(19)30397-2>.
Author: Amin Adibi [aut, cre],
Mohsen Sadatsafavi [aut, cph],
Abdollah Safari [aut],
Ainsleigh Hill [aut]
Maintainer: Amin Adibi <adibi@alumni.ubc.ca>
Diff between accept versions 0.7.1 dated 2020-03-18 and 0.8.2 dated 2021-06-15
accept-0.7.1/accept/R/conditionalRandomEffect.R |only accept-0.7.1/accept/man/predictACCEPT.Rd |only accept-0.8.2/accept/DESCRIPTION | 15 accept-0.8.2/accept/MD5 | 27 accept-0.8.2/accept/NAMESPACE | 33 accept-0.8.2/accept/NEWS.md | 20 accept-0.8.2/accept/R/CI_test.R |only accept-0.8.2/accept/R/charts.R | 224 ++--- accept-0.8.2/accept/R/package-init.R | 74 - accept-0.8.2/accept/R/predict.R | 961 ++++++++++++++++-------- accept-0.8.2/accept/README.md | 238 +++-- accept-0.8.2/accept/man/accept.Rd |only accept-0.8.2/accept/man/accept2.Rd |only accept-0.8.2/accept/man/plotExacerbations.Rd | 72 - accept-0.8.2/accept/man/plotHeatMap.Rd | 50 - accept-0.8.2/accept/man/predictCountProb.Rd | 50 - accept-0.8.2/accept/man/samplePatients.Rd | 66 - 17 files changed, 1115 insertions(+), 715 deletions(-)
Title: Export Domain Logic from Shiny using Meta-Programming
Description: Provides tools for capturing logic in a Shiny app and exposing it as code that can be run outside of Shiny (e.g., from an R console). It also provides tools for bundling both the code and results to the end user.
Author: Joe Cheng [aut],
Carson Sievert [cre, aut] (<https://orcid.org/0000-0002-4958-2844>),
RStudio [cph]
Maintainer: Carson Sievert <carson@rstudio.com>
Diff between shinymeta versions 0.2.0 dated 2021-06-15 and 0.2.0.1 dated 2021-06-15
DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- NEWS.md | 4 ++++ README.md | 14 ++++++++++---- tests/testthat/test-report.R | 5 +++++ 5 files changed, 29 insertions(+), 14 deletions(-)
Title: Random Orthonormal Matrix Generation and Optimization on the
Stiefel Manifold
Description: Simulation of random orthonormal matrices from linear and quadratic exponential family distributions on the Stiefel manifold. The most general type of distribution covered is the matrix-variate Bingham-von Mises-Fisher distribution. Most of the simulation methods are presented in Hoff(2009) "Simulation of the Matrix Bingham-von Mises-Fisher Distribution, With Applications to Multivariate and Relational Data" <doi:10.1198/jcgs.2009.07177>. The package also includes functions for optimization on the Stiefel manifold based on algorithms described in Wen and Yin (2013) "A feasible method for optimization with orthogonality constraints" <doi:10.1007/s10107-012-0584-1>.
Author: Peter Hoff and Alexander Franks
Maintainer: Peter Hoff <peter.hoff@duke.edu>
Diff between rstiefel versions 1.0.0 dated 2019-02-20 and 1.0.1 dated 2021-06-15
DESCRIPTION | 8 ++--- MD5 | 21 ++++++++------- NEWS.md | 4 ++ R/opt.stiefel.R | 68 ++++++++++++++++++++++++++++++-------------------- R/rW.R | 4 +- R/rstiefel-package.R | 2 - R/ry_bing.R | 4 +- R/ry_bmf.R | 4 +- README.md |only build/vignette.rds |binary inst/doc/rstiefel.pdf |binary man/optStiefel.Rd | 4 +- 12 files changed, 70 insertions(+), 49 deletions(-)
Title: Online Prediction by Expert Aggregation
Description: Misc methods to form online predictions, for regression-oriented
time-series, by combining a finite set of forecasts provided by the user. See
Cesa-Bianchi and Lugosi (2006) <doi:10.1017/CBO9780511546921> for an overview.
Author: Pierre Gaillard [cre, aut],
Yannig Goude [aut]
Maintainer: Pierre Gaillard <pierre@gaillard.me>
Diff between opera versions 1.1 dated 2020-03-18 and 1.1.1 dated 2021-06-15
DESCRIPTION | 13 MD5 | 83 ++-- NAMESPACE | 80 ++-- NEWS |only R/BOA.R | 164 ++++---- R/MLpol.R | 152 ++++---- R/MLprod.R | 154 ++++---- R/ewa.R | 114 +++--- R/ewaCalib.R | 279 +++++++-------- R/fixedshareCalib.R | 8 R/opera-package.R | 70 +-- R/ridge.R | 86 ++-- R/ridgeCalib.R | 270 +++++++------- README.md | 735 +++++++++++++++++++++++----------------- build/vignette.rds |binary inst/doc/opera-vignette.R | 311 +++++++++------- inst/doc/opera-vignette.Rmd | 76 ++-- inst/doc/opera-vignette.html | 642 ++++++++++++++++++++-------------- inst/img/Load-1.png |binary inst/img/MLpol-1.png |binary inst/img/MLpol-2.png |binary inst/img/MLpol-3.png |binary inst/img/MLpol-4.png |binary inst/img/MLpol-5.png |binary inst/img/MLpol-6.png |binary inst/img/NumWeek-1.png |binary inst/img/Temp-1.png |binary inst/img/loadAndForecasts-1.png |binary inst/img/oracle-1.png |binary inst/rmd/example.Rmd | 493 +++++++++++++++----------- man/electric_load.Rd | 58 +-- man/loss.Rd | 72 +-- man/mixture.Rd | 514 +++++++++++++-------------- man/opera-package.Rd | 240 ++++++------- man/oracle.Rd | 218 +++++------ man/plot.mixture.Rd | 70 +-- man/predict.mixture.Rd | 126 +++--- man/seriesToBlock.Rd | 56 +-- tests/testthat.R | 6 tests/testthat/test-blocks.R | 30 - tests/testthat/test-mixture.R | 702 +++++++++++++++++++------------------- tests/testthat/test-oracle.R | 308 ++++++++-------- vignettes/opera-vignette.Rmd | 76 ++-- 43 files changed, 3285 insertions(+), 2921 deletions(-)
Title: Pull Data from an 'ArcGIS REST' API
Description: Functions to efficiently query 'ArcGIS REST' APIs
<https://developers.arcgis.com/rest/>.
Both spatial and SQL queries can be used to retrieve data.
Simple Feature (sf) objects are utilized to perform spatial queries.
This package was neither produced nor is maintained by Esri.
Author: Paul Frater [aut, cre] (<https://orcid.org/0000-0002-7237-6563>),
Zac Driscoll [aut] (<https://orcid.org/0000-0002-8233-0980>)
Maintainer: Paul Frater <paul.frater@wisconsin.gov>
Diff between arcpullr versions 0.1.2 dated 2021-02-23 and 0.2.0 dated 2021-06-15
arcpullr-0.1.2/arcpullr/data/iceland.rda |only arcpullr-0.1.2/arcpullr/data/reykjanes.rda |only arcpullr-0.2.0/arcpullr/DESCRIPTION | 16 arcpullr-0.2.0/arcpullr/MD5 | 72 +- arcpullr-0.2.0/arcpullr/NAMESPACE | 14 arcpullr-0.2.0/arcpullr/R/arcpullr-package.R | 2 arcpullr-0.2.0/arcpullr/R/data.R | 43 + arcpullr-0.2.0/arcpullr/R/imports.R | 3 arcpullr-0.2.0/arcpullr/R/plot_layers.R | 275 +++++++++- arcpullr-0.2.0/arcpullr/R/process_raster.R |only arcpullr-0.2.0/arcpullr/R/retrieve_layer_properties.R |only arcpullr-0.2.0/arcpullr/R/retrieve_layers.R | 248 ++++++++- arcpullr-0.2.0/arcpullr/R/url_objects.R |only arcpullr-0.2.0/arcpullr/R/utilities.R | 240 +++++++- arcpullr-0.2.0/arcpullr/build/vignette.rds |binary arcpullr-0.2.0/arcpullr/data/iceland_poly.rda |only arcpullr-0.2.0/arcpullr/data/reykjanes_poly.rda |only arcpullr-0.2.0/arcpullr/data/sp_rel_lookup.rda |only arcpullr-0.2.0/arcpullr/data/sp_rel_valid.rda |only arcpullr-0.2.0/arcpullr/inst/doc/intro_to_arcpullr.R | 27 arcpullr-0.2.0/arcpullr/inst/doc/intro_to_arcpullr.Rmd | 148 +++-- arcpullr-0.2.0/arcpullr/inst/doc/intro_to_arcpullr.html | 67 +- arcpullr-0.2.0/arcpullr/man/arcpullr-package.Rd | 104 +-- arcpullr-0.2.0/arcpullr/man/figures/logo.png |only arcpullr-0.2.0/arcpullr/man/get_geometry_type.Rd |only arcpullr-0.2.0/arcpullr/man/get_image_layer.Rd |only arcpullr-0.2.0/arcpullr/man/get_layer_html.Rd |only arcpullr-0.2.0/arcpullr/man/get_layer_legend.Rd |only arcpullr-0.2.0/arcpullr/man/get_map_layer.Rd |only arcpullr-0.2.0/arcpullr/man/get_raster_layer.Rd |only arcpullr-0.2.0/arcpullr/man/get_service_type.Rd |only arcpullr-0.2.0/arcpullr/man/get_sf_crs.Rd | 2 arcpullr-0.2.0/arcpullr/man/get_spatial_layer.Rd | 29 - arcpullr-0.2.0/arcpullr/man/match_raster_colors.Rd |only arcpullr-0.2.0/arcpullr/man/plot_layer-RasterBrick-method.Rd |only arcpullr-0.2.0/arcpullr/man/plot_layer-RasterLayer-method.Rd |only arcpullr-0.2.0/arcpullr/man/plot_layer-RasterStack-method.Rd |only arcpullr-0.2.0/arcpullr/man/plot_layer-sf-method.Rd |only arcpullr-0.2.0/arcpullr/man/plot_layer.Rd | 38 - arcpullr-0.2.0/arcpullr/man/raster_colors-RasterBrick-method.Rd |only arcpullr-0.2.0/arcpullr/man/raster_colors-RasterLayer-method.Rd |only arcpullr-0.2.0/arcpullr/man/raster_colors-RasterStack-method.Rd |only arcpullr-0.2.0/arcpullr/man/raster_colors.Rd |only arcpullr-0.2.0/arcpullr/man/sf_example_polys.Rd | 8 arcpullr-0.2.0/arcpullr/man/sf_objects.Rd | 8 arcpullr-0.2.0/arcpullr/man/sp_rel_lookups.Rd |only arcpullr-0.2.0/arcpullr/man/valid_sp_rel.Rd |only arcpullr-0.2.0/arcpullr/tests/testthat/test_format_spatial_coords.R | 137 +++- arcpullr-0.2.0/arcpullr/tests/testthat/test_layer_properties.R |only arcpullr-0.2.0/arcpullr/tests/testthat/test_process_rasters.R |only arcpullr-0.2.0/arcpullr/tests/testthat/test_utilities.R | 4 arcpullr-0.2.0/arcpullr/vignettes/intro_to_arcpullr.Rmd | 148 +++-- 52 files changed, 1276 insertions(+), 357 deletions(-)
Title: Set of Common Tools for Forecast Verification
Description: Set of tools to verify forecasts through the computation of typical
prediction scores against one or more observational datasets or reanalyses (a
reanalysis being a physical extrapolation of observations that relies on the
equations from a model, not a pure observational dataset). Intended for seasonal
to decadal climate forecasts although can be useful to verify other kinds of
forecasts. The package can be helpful in climate sciences for other purposes
than forecasting. To find more details, see the review paper Manubens, N.et al. (2018)
<doi:10.1016/j.envsoft.2018.01.018>.
Author: BSC-CNS [aut, cph],
Virginie Guemas [aut],
Nicolau Manubens [aut],
An-Chi Ho [ctb, cre],
Nuria Perez-Zanon [ctb],
Javier Garcia-Serrano [aut],
Neven Fuckar [aut],
Louis-Philippe Caron [aut],
Omar Bellprat [aut],
Luis Rodrigues [aut],
Veronica Torralba [aut],
Alasdair Hunter [aut],
Chloe Prodhomme [aut],
Martin Menegoz [aut],
Domingo Manubens [ctb],
Constantin Ardilouze [ctb],
Lauriane Batte [ctb],
Fabian Lienert [ctb],
Julia Giner [ctb],
Jean-Philippe Baudouin [ctb],
Nube Gonzalez [ctb],
Ludovic Auger [ctb],
Nicola Cortesi [ctb],
Eleftheria Exarchou [ctb],
Ruben Cruz [ctb],
Isabel Andreu-Burillo [ctb],
Ramiro Saurral [ctb]
Maintainer: An-Chi Ho <an.ho@bsc.es>
Diff between s2dverification versions 2.9.0 dated 2020-11-01 and 2.10.0 dated 2021-06-15
DESCRIPTION | 10 - MD5 | 173 +++++++++--------- NAMESPACE | 1 NEWS.md | 10 + R/ACC.R | 2 R/CDORemap.R | 74 +++++++ R/Cluster.R | 2 R/EOF.R | 15 + R/Load.R | 147 ++------------- R/PlotAno.R | 5 R/PlotEquiMap.R | 92 ++++++++- R/PlotStereoMap.R | 360 +++++++++++++++++++++++++++++++++++--- R/StatSeasAtlHurr.R | 2 R/Utils.R | 15 - R/zzz.R |only data/sampleDepthData.RData |binary data/sampleMap.RData |binary data/sampleTimeSeries.RData |binary man/ACC.Rd | 21 +- man/Alpha.Rd | 1 man/AnimateMap.Rd | 33 ++- man/Ano.Rd | 1 man/Ano_CrossValid.Rd | 1 man/ArrayToNetCDF.Rd | 1 man/BrierScore.Rd | 13 - man/CDORemap.Rd | 14 + man/Clim.Rd | 1 man/Cluster.Rd | 9 man/ColorBar.Rd | 32 ++- man/Composite.Rd | 1 man/ConfigApplyMatchingEntries.Rd | 21 +- man/ConfigEditDefinition.Rd | 9 man/ConfigEditEntry.Rd | 57 ++++-- man/ConfigFileOpen.Rd | 13 - man/ConfigShowSimilarEntries.Rd | 27 +- man/ConfigShowTable.Rd | 13 - man/Consist_Trend.Rd | 1 man/Corr.Rd | 21 +- man/EOF.Rd | 11 - man/Enlarge.Rd | 1 man/Eno.Rd | 1 man/EnoNew.Rd | 11 - man/Filter.Rd | 1 man/FitAcfCoef.Rd | 1 man/FitAutocor.Rd | 1 man/GenSeries.Rd | 1 man/Histo2Hindcast.Rd | 1 man/IniListDims.Rd | 1 man/InsertDim.Rd | 1 man/LeapYear.Rd | 1 man/Load.Rd | 40 +++- man/Mean1Dim.Rd | 1 man/MeanListDim.Rd | 1 man/NAO.Rd | 21 +- man/Plot2VarsVsLTime.Rd | 31 ++- man/PlotACC.Rd | 27 ++ man/PlotAno.Rd | 31 ++- man/PlotBoxWhisker.Rd | 29 ++- man/PlotClim.Rd | 26 ++ man/PlotEquiMap.Rd | 105 ++++++++--- man/PlotLayout.Rd | 73 +++++-- man/PlotMatrix.Rd | 29 ++- man/PlotSection.Rd | 25 ++ man/PlotStereoMap.Rd | 134 ++++++++++++-- man/PlotVsLTime.Rd | 30 ++- man/ProbBins.Rd | 12 - man/ProjectField.Rd | 7 man/RMS.Rd | 15 + man/RMSSS.Rd | 3 man/RatioRMS.Rd | 3 man/RatioSDRMS.Rd | 3 man/Regression.Rd | 1 man/SVD.Rd | 12 - man/Season.Rd | 1 man/SelIndices.Rd | 1 man/Smoothing.Rd | 1 man/Spectrum.Rd | 1 man/Spread.Rd | 1 man/StatSeasAtlHurr.Rd | 9 man/Subset.Rd | 1 man/ToyModel.Rd | 15 + man/Trend.Rd | 3 man/UltimateBrier.Rd | 15 + man/clim.palette.Rd | 3 man/s2dverification.Rd | 9 man/sampleDepthData.Rd | 1 man/sampleMap.Rd | 1 man/sampleTimeSeries.Rd | 1 88 files changed, 1380 insertions(+), 572 deletions(-)
More information about s2dverification at CRAN
Permanent link
Title: Dynamic Documents for R
Description: Convert R Markdown documents into a variety of formats.
Author: JJ Allaire [aut],
Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Jonathan McPherson [aut],
Javier Luraschi [aut],
Kevin Ushey [aut],
Aron Atkins [aut],
Hadley Wickham [aut],
Joe Cheng [aut],
Winston Chang [aut],
Richard Iannone [aut] (<https://orcid.org/0000-0003-3925-190X>),
Andrew Dunning [ctb] (<https://orcid.org/0000-0003-0464-5036>),
Atsushi Yasumoto [ctb, cph] (<https://orcid.org/0000-0002-8335-495X>,
Number sections Lua filter),
Barret Schloerke [ctb],
Carson Sievert [ctb] (<https://orcid.org/0000-0002-4958-2844>),
Christophe Dervieux [ctb],
Devon Ryan [ctb] (<https://orcid.org/0000-0002-8549-0971>),
Frederik Aust [ctb] (<https://orcid.org/0000-0003-4900-788X>),
Jeff Allen [ctb],
JooYoung Seo [ctb] (<https://orcid.org/0000-0002-4064-6012>),
Malcolm Barrett [ctb],
Rob Hyndman [ctb],
Romain Lesur [ctb],
Roy Storey [ctb],
Ruben Arslan [ctb],
Sergio Oller [ctb],
RStudio, PBC [cph],
jQuery Foundation [cph] (jQuery library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/rmd/h/jquery-AUTHORS.txt),
jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in
inst/rmd/h/jqueryui-AUTHORS.txt),
Mark Otto [ctb] (Bootstrap library),
Jacob Thornton [ctb] (Bootstrap library),
Bootstrap contributors [ctb] (Bootstrap library),
Twitter, Inc [cph] (Bootstrap library),
Alexander Farkas [ctb, cph] (html5shiv library),
Scott Jehl [ctb, cph] (Respond.js library),
Ivan Sagalaev [ctb, cph] (highlight.js library),
Greg Franko [ctb, cph] (tocify library),
John MacFarlane [ctb, cph] (Pandoc templates),
Google, Inc. [ctb, cph] (ioslides library),
Dave Raggett [ctb] (slidy library),
W3C [cph] (slidy library),
Dave Gandy [ctb, cph] (Font-Awesome),
Ben Sperry [ctb] (Ionicons),
Drifty [cph] (Ionicons),
Aidan Lister [ctb, cph] (jQuery StickyTabs),
Benct Philip Jonsson [ctb, cph] (pagebreak Lua filter),
Albert Krewinkel [ctb, cph] (pagebreak Lua filter)
Maintainer: Yihui Xie <xie@yihui.name>
Diff between rmarkdown versions 2.8 dated 2021-05-07 and 2.9 dated 2021-06-15
rmarkdown-2.8/rmarkdown/tests/testthat/test-dependencies.R |only rmarkdown-2.9/rmarkdown/DESCRIPTION | 8 - rmarkdown-2.9/rmarkdown/MD5 | 68 +++++---- rmarkdown-2.9/rmarkdown/NEWS.md | 22 +++ rmarkdown-2.9/rmarkdown/R/context_document.R | 6 rmarkdown-2.9/rmarkdown/R/html_dependencies.R | 69 ++++++---- rmarkdown-2.9/rmarkdown/R/html_document.R | 13 + rmarkdown-2.9/rmarkdown/R/html_document_base.R | 5 rmarkdown-2.9/rmarkdown/R/html_notebook.R | 9 - rmarkdown-2.9/rmarkdown/R/html_resource_copy.R | 7 - rmarkdown-2.9/rmarkdown/R/html_resources.R | 2 rmarkdown-2.9/rmarkdown/R/html_vignette.R | 3 rmarkdown-2.9/rmarkdown/R/ioslides_presentation.R | 6 rmarkdown-2.9/rmarkdown/R/latex_dependencies.R | 4 rmarkdown-2.9/rmarkdown/R/output_format.R | 14 +- rmarkdown-2.9/rmarkdown/R/pandoc.R | 8 - rmarkdown-2.9/rmarkdown/R/pdf_document.R | 6 rmarkdown-2.9/rmarkdown/R/render.R | 68 +++++---- rmarkdown-2.9/rmarkdown/R/render_site.R | 23 +-- rmarkdown-2.9/rmarkdown/R/shiny.R | 8 - rmarkdown-2.9/rmarkdown/R/shiny_prerendered.R | 16 +- rmarkdown-2.9/rmarkdown/R/tufte_handout.R | 2 rmarkdown-2.9/rmarkdown/R/util.R | 6 rmarkdown-2.9/rmarkdown/build/vignette.rds |binary rmarkdown-2.9/rmarkdown/inst/rmd/h/default.html | 3 rmarkdown-2.9/rmarkdown/man/beamer_presentation.Rd | 6 rmarkdown-2.9/rmarkdown/man/context_document.Rd | 6 rmarkdown-2.9/rmarkdown/man/knitr_options_pdf.Rd | 6 rmarkdown-2.9/rmarkdown/man/pdf_document.Rd | 6 rmarkdown-2.9/rmarkdown/man/tufte_handout.Rd | 6 rmarkdown-2.9/rmarkdown/tests/testthat/_snaps/html_dependencies.md |only rmarkdown-2.9/rmarkdown/tests/testthat/_snaps/lua-filters.md | 2 rmarkdown-2.9/rmarkdown/tests/testthat/_snaps/render |only rmarkdown-2.9/rmarkdown/tests/testthat/resources/styles.css |only rmarkdown-2.9/rmarkdown/tests/testthat/test-formats.R | 28 +++- rmarkdown-2.9/rmarkdown/tests/testthat/test-html_dependencies.R |only rmarkdown-2.9/rmarkdown/tests/testthat/test-render.R | 20 ++ 37 files changed, 285 insertions(+), 171 deletions(-)
Title: Circular / Ring Buffers
Description: Circular / ring buffers in R and C. There are a couple
of different buffers here with different implementations that
represent different trade-offs.
Author: Rich FitzJohn [aut, cre],
Imperial College of Science, Technology and Medicine [cph]
Maintainer: Rich FitzJohn <rich.fitzjohn@gmail.com>
Diff between ring versions 1.0.0 dated 2017-04-24 and 1.0.3 dated 2021-06-15
DESCRIPTION | 24 LICENSE | 4 MD5 | 49 NEWS.md | 12 R/ring_buffer_bytes.R | 2 R/ring_buffer_env.R | 2 README.md | 25 build/vignette.rds |binary inst/WORDLIST |only inst/doc/ring.R | 104 - inst/doc/ring.Rmd | 36 inst/doc/ring.html | 1715 ++++++++++++++++++-------------- inst/doc/ring_applications.R | 32 inst/doc/ring_applications.Rmd | 4 inst/doc/ring_applications.html | 1131 ++++++++++++--------- inst/include/ring/ring.c | 19 man/ring_buffer_bytes.Rd | 16 man/ring_buffer_bytes_translate.Rd | 18 man/ring_buffer_bytes_typed.Rd | 16 man/ring_buffer_env.Rd | 18 src/ring_r.c | 31 tests/testthat/helper-ring.R | 15 tests/testthat/test-ring-buffer-bytes.R | 16 tests/testthat/test-search.R | 15 vignettes/ring.Rmd | 36 vignettes/ring_applications.Rmd | 4 26 files changed, 1958 insertions(+), 1386 deletions(-)
Title: Simulated Maximum Likelihood Estimation of Mixed Logit Models
for Large Datasets
Description: Specification and estimation of multinomial logit
models. Large datasets and complex models are supported, with an
intuitive syntax. Multinomial Logit Models, Mixed models, random
coefficients and Hybrid Choice are all supported. For more
information, see Molloy et al. (2019) <doi:10.3929/ethz-b-000334289>.
Author: Joseph Molloy [aut, cre]
Maintainer: Joseph Molloy <joseph.molloy@ivt.baug.ethz.ch>
Diff between mixl versions 1.2.3 dated 2020-10-21 and 1.3 dated 2021-06-15
mixl-1.2.3/mixl/inst/MIXL_OPENMP_FLAG |only mixl-1.2.3/mixl/inst/include/mixl/cpp_mixed_prediction_template.h |only mixl-1.2.3/mixl/inst/include/mixl/cpp_mnl_posteriors.cpp |only mixl-1.2.3/mixl/inst/include/mixl/cpp_mnl_prediction_template.h |only mixl-1.2.3/mixl/inst/include/mixl/cpp_mnl_template.h |only mixl-1.2.3/mixl/inst/include/mixl/cpp_posteriors.cpp |only mixl-1.2.3/mixl/inst/include/mixl/cpp_utility_template.h |only mixl-1.3/mixl/DESCRIPTION | 9 mixl-1.3/mixl/MD5 | 59 ++-- mixl-1.3/mixl/NAMESPACE | 1 mixl-1.3/mixl/R/check_inputs.R |only mixl-1.3/mixl/R/compile_posterior.R | 34 -- mixl-1.3/mixl/R/compiler.R | 2 mixl-1.3/mixl/R/examples/utilities.R |only mixl-1.3/mixl/R/mle.R | 140 +++------- mixl-1.3/mixl/R/model_stats.R | 5 mixl-1.3/mixl/R/preprocessor.R | 2 mixl-1.3/mixl/R/probabilities.R | 29 -- mixl-1.3/mixl/R/tex.R | 51 +-- mixl-1.3/mixl/R/utilities.R |only mixl-1.3/mixl/inst/doc/user-guide.Rmd | 2 mixl-1.3/mixl/inst/doc/user-guide.html | 22 - mixl-1.3/mixl/inst/include/mixl/loglik.cpp |only mixl-1.3/mixl/inst/include/mixl/posteriors.cpp |only mixl-1.3/mixl/inst/include/mixl/predict.cpp |only mixl-1.3/mixl/inst/include/mixl/utilities.cpp |only mixl-1.3/mixl/inst/include/mixl/utility_function.h | 22 - mixl-1.3/mixl/man/check_draw_inputs.Rd |only mixl-1.3/mixl/man/check_inputs.Rd | 14 - mixl-1.3/mixl/man/estimate.Rd | 7 mixl-1.3/mixl/man/posteriors.Rd | 2 mixl-1.3/mixl/man/summary_tex.Rd | 10 mixl-1.3/mixl/man/utilities.Rd |only mixl-1.3/mixl/tests/testthat/test_hybrid_choice.R | 42 +++ mixl-1.3/mixl/tests/testthat/test_maxlikelihood.R | 10 mixl-1.3/mixl/tests/testthat/test_posteriors.R | 6 mixl-1.3/mixl/tests/testthat/test_utilities.R |only mixl-1.3/mixl/tests/testthat/test_weights.R |only mixl-1.3/mixl/tests/testthat/testthat-problems.rds |only mixl-1.3/mixl/vignettes/user-guide.Rmd | 2 40 files changed, 227 insertions(+), 244 deletions(-)
Title: Distributions Hermite Polynomial Approximation
Description: Multivariate conditional and marginal densities, moments, cumulative distribution functions as well as binary choice and sample selection models based on Hermite polynomial approximation which was proposed and described by A. Gallant and D. W. Nychka (1987) <doi:10.2307/1913241>.
Author: Potanin Bogdan
Maintainer: Potanin Bogdan <bogdanpotanin@gmail.com>
Diff between hpa versions 1.1.3 dated 2020-11-17 and 1.2.0 dated 2021-06-15
hpa-1.1.3/hpa/man/plot_hpaBinary.Rd |only hpa-1.1.3/hpa/man/plot_hpaSelection.Rd |only hpa-1.2.0/hpa/DESCRIPTION | 8 hpa-1.2.0/hpa/MD5 | 62 - hpa-1.2.0/hpa/NAMESPACE | 20 hpa-1.2.0/hpa/R/RcppExports.R | 120 +-- hpa-1.2.0/hpa/R/hpaBinary_generics.R | 95 ++ hpa-1.2.0/hpa/R/hpaML_generics.R | 126 +++ hpa-1.2.0/hpa/R/hpaSelection_generics.R | 200 +++++ hpa-1.2.0/hpa/man/coef.hpaBinary.Rd |only hpa-1.2.0/hpa/man/coef.hpaML.Rd |only hpa-1.2.0/hpa/man/coef.hpaSelection.Rd |only hpa-1.2.0/hpa/man/hpaBinary.Rd | 24 hpa-1.2.0/hpa/man/hpaDist.Rd | 251 ++++++- hpa-1.2.0/hpa/man/hpaML.Rd | 47 - hpa-1.2.0/hpa/man/hpaSelection.Rd | 69 +- hpa-1.2.0/hpa/man/plot.hpaBinary.Rd | 3 hpa-1.2.0/hpa/man/plot.hpaML.Rd | 3 hpa-1.2.0/hpa/man/plot.hpaSelection.Rd | 15 hpa-1.2.0/hpa/man/predict.hpaSelection.Rd | 27 hpa-1.2.0/hpa/man/summary.hpaSelection.Rd | 3 hpa-1.2.0/hpa/man/vcov.hpaBinary.Rd |only hpa-1.2.0/hpa/man/vcov.hpaML.Rd |only hpa-1.2.0/hpa/man/vcov.hpaSelection.Rd |only hpa-1.2.0/hpa/src/Makevars | 5 hpa-1.2.0/hpa/src/Makevars.win | 17 hpa-1.2.0/hpa/src/RcppExports.cpp | 228 ++++-- hpa-1.2.0/hpa/src/hpaBinary.cpp | 240 ++----- hpa-1.2.0/hpa/src/hpaML.cpp | 136 ++-- hpa-1.2.0/hpa/src/hpaMain.cpp | 1005 +++++++++++++++++++++--------- hpa-1.2.0/hpa/src/hpaMain.h | 133 ++- hpa-1.2.0/hpa/src/hpaSelection.cpp | 465 +++++-------- hpa-1.2.0/hpa/src/hpaSelection.h | 28 hpa-1.2.0/hpa/src/hpaValidation.cpp | 19 hpa-1.2.0/hpa/src/hpaValidation.h | 3 hpa-1.2.0/hpa/src/polynomialIndex.cpp | 7 36 files changed, 2125 insertions(+), 1234 deletions(-)
Title: Omics Data Integration Using Kernel Methods
Description: Kernel-based methods are powerful methods for integrating
heterogeneous types of data. mixKernel aims at providing methods to combine
kernel for unsupervised exploratory analysis. Different solutions are
provided to compute a meta-kernel, in a consensus way or in a way that
best preserves the original topology of the data. mixKernel also integrates
kernel PCA to visualize similarities between samples in a non linear space
and from the multiple source point of view. Functions to assess and display
important variables are also provided in the package. Jerome Mariette and
Nathalie Villa-Vialaneix (2018) <doi:10.1093/bioinformatics/btx682>.
Author: Jerome Mariette [aut, cre],
Celine Brouard [aut],
Remi Flamary [aut],
Nathalie Vialaneix [aut]
Maintainer: Jerome Mariette <jerome.mariette@inrae.fr>
Diff between mixKernel versions 0.6 dated 2021-05-17 and 0.7 dated 2021-06-15
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 5 +++++ R/kernel.pca.R | 4 ++-- R/plot.kernel.pca.R | 2 +- 5 files changed, 16 insertions(+), 11 deletions(-)
Title: Bayesian Exponential Random Graph Models
Description: Bayesian analysis for exponential random graph models using advanced computational algorithms. More information can be found at: <https://acaimo.github.io/Bergm/>.
Author: Alberto Caimo [aut, cre],
Lampros Bouranis [aut],
Robert Krause [aut]
Nial Friel [ctb]
Maintainer: Alberto Caimo <acaimo.stats@gmail.com>
Diff between Bergm versions 5.0.2 dated 2020-11-12 and 5.0.3 dated 2021-06-15
DESCRIPTION | 12 - MD5 | 22 +- R/bergm.R | 99 ++++++--- R/bergmC.R | 582 ++++++++++++++++++++++++++++----------------------------- R/bergmM.R | 133 ++++++++----- R/bgof.R | 24 +- R/ergmAPL.R | 72 +++---- R/evidenceCJ.R | 2 R/evidencePP.R | 6 man/bergm.Rd | 3 man/bergmM.Rd | 13 - man/bgof.Rd | 2 12 files changed, 531 insertions(+), 439 deletions(-)
Title: R Interface to X-13-ARIMA-SEATS
Description: Easy-to-use interface to X-13-ARIMA-SEATS, the seasonal adjustment
software by the US Census Bureau. It offers full access to almost all
options and outputs of X-13, including X-11 and SEATS, automatic ARIMA model
search, outlier detection and support for user defined holiday variables,
such as Chinese New Year or Indian Diwali. A graphical user interface can be
used through the 'seasonalview' package. Uses the X-13-binaries from the
'x13binary' package.
Author: Christoph Sax [aut, cre] (<https://orcid.org/0000-0002-7192-7044>),
Dirk Eddelbuettel [ctb] (<https://orcid.org/0000-0001-6419-907X>)
Maintainer: Christoph Sax <christoph.sax@gmail.com>
Diff between seasonal versions 1.8.2 dated 2021-03-29 and 1.8.3 dated 2021-06-15
DESCRIPTION | 8 ++--- MD5 | 62 ++++++++++++++++++++++----------------------- NEWS | 8 +++++ R/checkX13.R | 2 - R/diagnostics.R | 6 ++-- R/extractors.R | 2 - R/genhol.R | 3 -- R/out.R | 4 +- R/plot.R | 2 - R/seas.R | 6 ---- R/seasonal-package.R | 2 - R/series.R | 2 - R/startup.R | 20 +++++++++----- R/static.R | 2 - R/udg.R | 2 - README.md | 6 ++-- build/partial.rdb |binary build/vignette.rds |binary inst/doc/seas.pdf |binary man/SPECS.Rd | 2 - man/final.Rd | 2 - man/fivebestmdl.Rd | 2 - man/genhol.Rd | 4 -- man/out.Rd | 4 +- man/plot.seas.Rd | 2 - man/seas.Rd | 6 ---- man/series.Rd | 2 - man/spc.Rd | 2 - man/static.Rd | 2 - man/transformfunction.Rd | 2 - man/udg.Rd | 2 - tests/testthat/test-cran.R | 6 ++++ 32 files changed, 90 insertions(+), 85 deletions(-)
More information about precisePlacement at CRAN
Permanent link
Title: Estimation of Number of Clusters and Identification of Atypical
Units
Description: It is a package that helps to estimate the number of real clusters in data as well as to identify atypical units. The underlying methods are based on distances rather than on unit x variables.
Author: Itziar Irigoien [aut, cre],
Concepcion Arenas [aut]
Maintainer: Itziar Irigoien <itziar.irigoien@ehu.eus>
Diff between ICGE versions 0.4 dated 2021-06-08 and 0.4.1 dated 2021-06-15
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/dbhatta.R | 17 ++++++++++------- man/INCAnumclu.Rd | 11 ++++------- man/INCAtest.Rd | 2 +- man/dbhatta.Rd | 18 ++++++++---------- 6 files changed, 32 insertions(+), 34 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-06-01 0.1.3
Title: Automatic Unobserved Components Models
Description: Comprehensive analysis and forecasting
of univariate time series using automatic
unobserved components models and algorithms.
Harvey, AC (1989) <doi:10.1017/CBO9781107049994>.
Pedregal, DJ and Young PC (2002) <doi:10.1002/9780470996430>.
Durbin J and Koopman SJ (2012) <doi:10.1093/acprof:oso/9780199641178.001.0001>.
Author: Diego J. Pedregal [aut, cre] (<https://orcid.org/0000-0003-4958-0969>)
Maintainer: Diego J. Pedregal <Diego.Pedregal@uclm.es>
Diff between UComp versions 2.2 dated 2021-06-04 and 2.2.1 dated 2021-06-15
ChangeLog | 3 DESCRIPTION | 8 - MD5 | 46 +++---- NAMESPACE | 3 R/UCS3functions.R | 4 R/UCcomponents.R | 245 ++++++++++++++++++++-------------------- R/UCestim.R | 312 +++++++++++++++++++++++++-------------------------- R/UCfilter.R | 39 +++--- R/UCmodel.R | 120 +++++++++---------- R/UCvalidate.R | 199 ++++++++++++++++---------------- man/UC.Rd | 38 +++--- man/UCcomponents.Rd | 6 man/UCdisturb.Rd | 14 +- man/UCestim.Rd | 45 +++---- man/UCfilter.Rd | 12 + man/UCmodel.Rd | 38 +++--- man/UCsetup.Rd | 38 +++--- man/UCsmooth.Rd | 10 - man/UCvalidate.Rd | 4 man/predict.UComp.Rd |only man/size.Rd |only src/BSMmodel.h | 87 +++++++++++--- src/UCompC.cpp | 1 src/optim.h | 2 src/stats.h | 83 ++++++++----- 25 files changed, 731 insertions(+), 626 deletions(-)
Title: Geometrical Functionality of the 'spatstat' Family
Description: Defines types of spatial data such as point patterns,
mainly in two dimensions, but also in higher dimensions.
Provides class support, and functions for geometrical operations
on spatial data, used in the 'spatstat' family of packages.
Excludes spatial data on a linear network, which are covered by
the separate package 'spatstat.linnet'.
Author: Adrian Baddeley [aut, cre],
Rolf Turner [aut],
Ege Rubak [aut],
Tilman Davies [ctb],
Ute Hahn [ctb],
Abdollah Jalilian [ctb],
Sebastian Meyer [ctb],
Suman Rakshit [ctb],
Dominic Schuhmacher [ctb],
Rasmus Waagepetersen [ctb]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.geom versions 2.1-0 dated 2021-04-15 and 2.2-0 dated 2021-06-15
DESCRIPTION | 10 +++++----- MD5 | 26 ++++++++++++++------------ NAMESPACE | 1 + NEWS | 22 +++++++++++++++++++++- R/bufftess.R |only R/distmap.R | 33 +++++++++++++++++++++------------ inst/doc/packagesizes.txt | 1 + man/bufftess.Rd |only man/distmap.psp.Rd | 31 ++++++++++++++++++++++--------- man/polartess.Rd | 4 +++- man/quadrats.Rd | 11 +++++------ man/tess.Rd | 3 ++- tests/testsGtoJ.R | 2 +- tests/testsNtoO.R | 16 +++++++++++----- tests/testsS.R | 6 +++--- 15 files changed, 110 insertions(+), 56 deletions(-)
More information about outlierensembles at CRAN
Permanent link
Title: Fast Cross-Validation for Multi-Penalty Ridge Regression
Description: Multi-penalty linear, logistic and cox ridge regression, including estimation of the penalty parameters by efficient (repeated) cross-validation and marginal likelihood maximization. Multiple high-dimensional data types that require penalization are allowed, as well as unpenalized variables. Paired and preferential data types can be specified. See Van de Wiel et al. (2021), <arXiv:2005.09301>.
Author: Mark A. van de Wiel
Maintainer: Mark A. van de Wiel <mark.vdwiel@amsterdamumc.nl>
Diff between multiridge versions 1.7 dated 2021-04-28 and 1.9 dated 2021-06-15
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/MultiLambdaCVfun.R | 28 ++++++++++++++++++---------- build/partial.rdb |binary 4 files changed, 25 insertions(+), 17 deletions(-)
Title: Distributed Lag Non-Linear Models
Description: Collection of functions for distributed lag linear and non-linear models.
Author: Antonio Gasparrini [aut, cre],
Ben Armstrong [aut],
Fabian Scheipl [ctb]
Maintainer: Antonio Gasparrini <antonio.gasparrini@lshtm.ac.uk>
Diff between dlnm versions 2.4.5 dated 2021-03-21 and 2.4.6 dated 2021-06-15
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS.md | 8 ++++++++ R/crosspred.R | 2 +- build/vignette.rds |binary inst/NEWS | 8 ++++++++ inst/doc/dlnmExtended.pdf |binary inst/doc/dlnmOverview.pdf |binary inst/doc/dlnmPenalized.pdf |binary inst/doc/dlnmTS.pdf |binary 10 files changed, 30 insertions(+), 14 deletions(-)
Title: Miscellaneous Functions for Working with 'stars' Rasters
Description: Miscellaneous functions for working with 'stars' objects, mainly single-band rasters. Currently includes functions for: (1) focal filtering, (2) detrending of Digital Elevation Models, (3) calculating flow length, (4) calculating the Convergence Index, (5) calculating topographic aspect and topographic slope.
Author: Michael Dorman [aut, cre]
Maintainer: Michael Dorman <dorman@post.bgu.ac.il>
Diff between starsExtra versions 0.2.4 dated 2021-03-16 and 0.2.5 dated 2021-06-15
DESCRIPTION | 6 MD5 | 10 NEWS.md | 9 R/matrix_to_stars.R | 2 build/vignette.rds |binary inst/doc/intro.html | 1357 +++++++++++++++++++++++++++++++++++++++++++++++++--- 6 files changed, 1319 insertions(+), 65 deletions(-)
Title: 'lp_solve' Plugin for the 'R' Optimization Infrastructure
Description: Enhances the 'R' Optimization Infrastructure ('ROI') package
with the 'lp_solve' solver.
Author: Florian Schwendinger [aut, cre]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between ROI.plugin.lpsolve versions 1.0-0 dated 2020-08-29 and 1.0-1 dated 2021-06-15
DESCRIPTION | 8 ++++---- MD5 | 5 +++-- R/plugin.R | 46 +++++++++++++++++++++++++++++++++++++++++----- README.md |only 4 files changed, 48 insertions(+), 11 deletions(-)
More information about ROI.plugin.lpsolve at CRAN
Permanent link
Title: Lining Up Two Sets of Measurements
Description: Tools for detecting and correcting sample mix-ups between two sets
of measurements, such as between gene expression data on two
tissues. This is a revised version of the 'lineup' package, to be
more general and not tied to the 'qtl' package.
Author: Karl W Broman [aut, cre] (<https://orcid.org/0000-0002-4914-6671>)
Maintainer: Karl W Broman <broman@wisc.edu>
Diff between lineup2 versions 0.4 dated 2021-01-18 and 0.6 dated 2021-06-15
DESCRIPTION | 8 - MD5 | 18 +- NEWS.md | 7 + R/plot_sample.R | 7 - build/vignette.rds |binary data/lineup2ex.RData |binary inst/doc/lineup2.R | 11 - inst/doc/lineup2.Rmd | 17 +- inst/doc/lineup2.html | 349 +++++++++++--------------------------------------- vignettes/lineup2.Rmd | 17 +- 10 files changed, 118 insertions(+), 316 deletions(-)
Title: Download School District Geospatial Data, Perform Spatial
Analysis, and Create Formatted Exportable Maps
Description: Import US Census Bureau, Education Demographic and Geographic Estimates Program,
Composite School District Boundaries Files for 2013-2019 with the option to attach the 'EdBuild'
master dataset of school district finance, student demographics, and community economic
indicators for every school district in the United States. The master dataset is built
from the US Census, Annual Survey of School System Finances (F33) and joins data from the
National Center for Education Statistics, Common Core of Data; the US Census, Small Area
Income and Poverty Estimates; and the US Census, Education Demographic and Geographic
Estimates. Additional functions in the package create a dataset of all pairs of school
district neighbors as either a dataframe or a shapefile and create formatted maps of
selected districts at the state or neighbor level, symbolized by a selected variable
in the 'EdBuild' master dataset. For full details about 'EdBuild' data processing please
see 'EdBuild' (2020) <http://data.edbuild.org/>.
Author: Megan Brodzik [cre, aut],
Cecilia Depman [aut],
Sara Hodges [aut]
Maintainer: Megan Brodzik <meganbrodzik@gmail.com>
Diff between edbuildmapr versions 0.3.0 dated 2021-06-02 and 0.3.1 dated 2021-06-15
DESCRIPTION | 10 +++--- MD5 | 10 +++--- NAMESPACE | 1 NEWS.md | 5 +++ R/borders.R | 86 ++++++++++++++++++++++++++++++++------------------------- man/borders.Rd | 39 ++++++++----------------- 6 files changed, 78 insertions(+), 73 deletions(-)
Title: Statistical Functions for the Design of Studies with Composite
Endpoints
Description: It has been designed to calculate the required sample size in randomized clinical trials with composite endpoints. This package also includes functions to calculate the probability of observing the composite endpoint and the expected effect on the composite endpoint, among others. The methods implemented can be found in Bofill & Gómez (2019) <doi:10.1002/sim.8092> and Gómez & Lagakos (2013) <doi:10.1002/sim.5547>.
Author: Marta Bofill Roig [aut, cre], Jordi Cortes Martinez [aut], Guadalupe Gomez Melis [ctb]
Maintainer: Marta Bofill Roig <marta.bofill.roig@upc.edu>
Diff between CompAREdesign versions 1.7 dated 2021-02-02 and 1.9 dated 2021-06-15
DESCRIPTION | 7 +++---- MD5 | 18 +++++++++++++----- NAMESPACE | 5 +++++ R/ARE_tte.R |only R/effectsize_tte.R | 8 ++++++++ R/freedman_formula.R |only R/sample_size_tte.R |only R/schoendfeld_formula.R |only man/ARE_tte.Rd |only man/CompAREdesign-package.Rd | 14 ++++++++++++++ man/effectsize_tte.Rd | 2 ++ man/freedman_formula.Rd |only man/samplesize_tte.Rd |only man/schoendfeld_formula.Rd |only 14 files changed, 45 insertions(+), 9 deletions(-)
Title: 'SAS' Linear Model
Description: This is a core implementation of 'SAS' procedures for linear models - GLM, REG, and ANOVA. Some R packages provide type II and type III SS. However, the results of nested and complex designs are often different from those of 'SAS.' Different results does not necessarily mean incorrectness. However, many wants the same results to SAS. This package aims to achieve that.
Reference: Littell RC, Stroup WW, Freund RJ (2002, ISBN:0-471-22174-0).
Author: Kyun-Seop Bae [aut]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between sasLM versions 0.5.3 dated 2021-05-14 and 0.6.0 dated 2021-06-15
sasLM-0.5.3/sasLM/inst/doc/Report-Different-Simplest2104212048.pdf |only sasLM-0.5.3/sasLM/inst/doc/Report-NOT-OKs2104212045.pdf |only sasLM-0.5.3/sasLM/inst/doc/Validation-Report-ANOVA-2104212041.pdf |only sasLM-0.5.3/sasLM/inst/doc/Validation-Report-GLM-2104212036.pdf |only sasLM-0.6.0/sasLM/DESCRIPTION | 8 sasLM-0.6.0/sasLM/MD5 | 126 +++--- sasLM-0.6.0/sasLM/NAMESPACE | 5 sasLM-0.6.0/sasLM/R/ANOVA.R | 5 sasLM-0.6.0/sasLM/R/BasicUtil.R | 184 +++++++++- sasLM-0.6.0/sasLM/R/CIest.R | 12 sasLM-0.6.0/sasLM/R/CONTR.R |only sasLM-0.6.0/sasLM/R/Coll.R | 26 + sasLM-0.6.0/sasLM/R/Diffogram.R |only sasLM-0.6.0/sasLM/R/EMS.R | 13 sasLM-0.6.0/sasLM/R/ESTM.R |only sasLM-0.6.0/sasLM/R/GLM.R | 5 sasLM-0.6.0/sasLM/R/LSM.R | 62 +++ sasLM-0.6.0/sasLM/R/Max.R |only sasLM-0.6.0/sasLM/R/Mean.R | 2 sasLM-0.6.0/sasLM/R/Median.R |only sasLM-0.6.0/sasLM/R/Min.R |only sasLM-0.6.0/sasLM/R/ModelMatrix.R | 15 sasLM-0.6.0/sasLM/R/PDIFF.R | 96 ++++- sasLM-0.6.0/sasLM/R/REG.R | 5 sasLM-0.6.0/sasLM/R/SD.R | 2 sasLM-0.6.0/sasLM/R/SLICE.R |only sasLM-0.6.0/sasLM/R/T3MS.R | 5 sasLM-0.6.0/sasLM/R/T3test.R | 18 sasLM-0.6.0/sasLM/R/aov1.R | 5 sasLM-0.6.0/sasLM/R/aov2.R | 5 sasLM-0.6.0/sasLM/R/aov3.R | 5 sasLM-0.6.0/sasLM/R/cSS.R | 4 sasLM-0.6.0/sasLM/R/e1.R | 12 sasLM-0.6.0/sasLM/R/e2.R | 27 - sasLM-0.6.0/sasLM/R/est.R | 51 ++ sasLM-0.6.0/sasLM/R/estmb.R | 2 sasLM-0.6.0/sasLM/R/lfit.R | 2 sasLM-0.6.0/sasLM/R/lr.R | 5 sasLM-0.6.0/sasLM/R/lr0.R | 4 sasLM-0.6.0/sasLM/R/pB.R | 28 + sasLM-0.6.0/sasLM/R/regD.R | 10 sasLM-0.6.0/sasLM/R/satt.R | 7 sasLM-0.6.0/sasLM/R/tsum.R | 2 sasLM-0.6.0/sasLM/inst/NEWS.Rd | 16 sasLM-0.6.0/sasLM/inst/doc/Report-Different-Simplest2105301642.pdf |only sasLM-0.6.0/sasLM/inst/doc/Report-NOT-OKs2105301640.pdf |only sasLM-0.6.0/sasLM/inst/doc/Validation-Report-ANOVA-2105301636.pdf |only sasLM-0.6.0/sasLM/inst/doc/Validation-Report-GLM-2105301631.pdf |only sasLM-0.6.0/sasLM/inst/doc/sasLM-manual.pdf |binary sasLM-0.6.0/sasLM/man/BasicUtil.Rd | 3 sasLM-0.6.0/sasLM/man/CIest.Rd | 2 sasLM-0.6.0/sasLM/man/CONTR.Rd |only sasLM-0.6.0/sasLM/man/Diffogram.Rd |only sasLM-0.6.0/sasLM/man/ESTM.Rd |only sasLM-0.6.0/sasLM/man/GLM.Rd | 2 sasLM-0.6.0/sasLM/man/LSM.Rd | 18 sasLM-0.6.0/sasLM/man/Max.Rd |only sasLM-0.6.0/sasLM/man/Median.Rd |only sasLM-0.6.0/sasLM/man/Min.Rd |only sasLM-0.6.0/sasLM/man/PDIFF.Rd | 18 sasLM-0.6.0/sasLM/man/Pcor.test.Rd | 2 sasLM-0.6.0/sasLM/man/REG.Rd | 11 sasLM-0.6.0/sasLM/man/SLICE.Rd |only sasLM-0.6.0/sasLM/man/SS.Rd | 4 sasLM-0.6.0/sasLM/man/aov2.Rd | 2 sasLM-0.6.0/sasLM/man/cSS.Rd | 13 sasLM-0.6.0/sasLM/man/e2.Rd | 2 sasLM-0.6.0/sasLM/man/est.Rd | 15 sasLM-0.6.0/sasLM/man/lr.Rd | 3 sasLM-0.6.0/sasLM/man/lr0.Rd | 2 sasLM-0.6.0/sasLM/man/pB.Rd | 3 sasLM-0.6.0/sasLM/man/pD.Rd | 2 sasLM-0.6.0/sasLM/man/regD.Rd | 6 sasLM-0.6.0/sasLM/man/satt.Rd | 4 sasLM-0.6.0/sasLM/tests/Test.R | 41 +- 75 files changed, 711 insertions(+), 216 deletions(-)
Title: Local Randomization Methods for RD Designs
Description: The regression discontinuity (RD) design is a popular quasi-experimental design for causal inference and policy evaluation. Under the local randomization approach, RD designs can be interpreted as randomized experiments inside a window around the cutoff. This package provides tools to perform randomization inference for RD designs under local randomization: rdrandinf() to perform hypothesis testing using randomization inference, rdwinselect() to select a window around the cutoff in which randomization is likely to hold, rdsensitivity() to assess the sensitivity of the results to different window lengths and null hypotheses and rdrbounds() to construct Rosenbaum bounds for sensitivity to unobserved confounders. See Cattaneo, Titiunik and Vazquez-Bare (2016) <https://rdpackages.github.io/references/Cattaneo-Titiunik-VazquezBare_2016_Stata.pdf> for further methodological details.
Author: Matias D. Cattaneo, Rocio Titiunik, Gonzalo Vazquez-Bare
Maintainer: Gonzalo Vazquez-Bare <gvazquez@econ.ucsb.edu>
Diff between rdlocrand versions 0.7.1 dated 2020-08-26 and 0.8 dated 2021-06-15
DESCRIPTION | 7 MD5 | 20 +- R/rdlocrand_fun.R | 97 ++++++++++ R/rdlocrand_package.R | 2 R/rdrandinf.R | 160 ++++++++++------- R/rdrbounds.R | 2 R/rdsensitivity.R | 128 +++++++------- R/rdwinselect.R | 449 ++++++++++++++++++++++++-------------------------- man/rdrandinf.Rd | 6 man/rdsensitivity.Rd | 12 + man/rdwinselect.Rd | 8 11 files changed, 506 insertions(+), 385 deletions(-)
Title: AUC Estimation of Interval Censored Survival Data
Description: The kernel of this 'Rcpp' based package is an efficient implementation of the generalized gradient projection method for spline function based constrained maximum likelihood estimator for interval censored survival data (Wu, Yuan; Zhang, Ying. Partially monotone tensor spline estimation of the joint distribution function with bivariate current status data. Ann. Statist. 40, 2012, 1609-1636 <doi:10.1214/12-AOS1016>). The key function computes the density function of the joint distribution of event time and the marker and returns the receiver operating characteristic (ROC) curve for the interval censored survival data as well as area under the curve (AUC).
Author: Jiaxing Lin, Yuan Wu, Xiaofei Wang, Kouros Owzar.
Maintainer: Yuan Wu <yuan.wu@duke.edu>
Diff between intcensROC versions 0.1.2 dated 2020-11-12 and 0.1.3 dated 2021-06-15
DESCRIPTION | 10 +++---- MD5 | 14 +++++------ NEWS | 6 +++- build/vignette.rds |binary inst/doc/intcensROC.R | 53 +++++++----------------------------------- inst/doc/intcensROC.Rnw | 59 ++++++++--------------------------------------- inst/doc/intcensROC.pdf |binary vignettes/intcensROC.Rnw | 59 ++++++++--------------------------------------- 8 files changed, 49 insertions(+), 152 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-05 0.2.0
2020-05-02 0.1.0