Title: Creating Groups from Data
Description: Methods for dividing data into groups.
Create balanced partitions and cross-validation folds.
Perform time series windowing and general grouping and splitting of data.
Balance existing groups with up- and downsampling.
Author: Ludvig Renbo Olsen [aut, cre]
Maintainer: Ludvig Renbo Olsen <r-pkgs@ludvigolsen.dk>
Diff between groupdata2 versions 1.4.1 dated 2021-03-06 and 1.4.2 dated 2021-06-19
DESCRIPTION | 7 -- MD5 | 36 +++++----- NEWS.md | 4 + R/fold.R | 2 R/group.R | 53 ++++++++++++--- R/group_factor.R | 58 ++++++++++++---- R/package_info.R | 18 ++--- R/splt.R | 4 - build/groupdata2.pdf |binary inst/doc/automatic_groups_with_groupdata2.html | 4 - inst/doc/cross-validation_with_groupdata2.html | 4 - inst/doc/description_of_groupdata2.html | 4 - inst/doc/introduction_to_groupdata2.html | 4 - inst/doc/time_series_with_groupdata2.html | 4 - man/fold.Rd | 2 man/group.Rd | 86 ++++++++++++++++++------- man/group_factor.Rd | 57 ++++++++++++---- man/groupdata2.Rd | 18 ++--- man/splt.Rd | 38 ++++++----- 19 files changed, 275 insertions(+), 128 deletions(-)
Title: Calculation of Slope-Dependant Accumulated Cost Surface,
Least-Cost Paths, and Least-Cost Corridors Related to Human
Movement Across the Landscape
Description: Provides the facility to calculate non-isotropic accumulated cost surface, least-cost paths, and least-cost corridors using a number of human-movement-related cost functions that can be selected by the user. It just requires a Digital Terrain Model, a start location and (optionally) destination locations. See Alberti (2019) <doi:10.1016/j.softx.2019.100331>.
Author: Gianmarco Alberti [aut, cre]
Maintainer: Gianmarco Alberti <gianmarcoalberti@gmail.com>
Diff between movecost versions 1.0 dated 2021-06-09 and 1.1 dated 2021-06-19
DESCRIPTION | 6 MD5 | 14 +- NEWS.md | 10 - R/movecorr.R | 12 - R/movecost.R | 390 ++++++++++++++++++++++++++++++++------------------------ README.md | 9 + man/movecorr.Rd | 12 - man/movecost.Rd | 170 ++++++++++++++++-------- 8 files changed, 380 insertions(+), 243 deletions(-)
Title: Sound Synthesis and Acoustic Analysis
Description: Performs parametric synthesis of sounds with harmonic and noise
components such as animal vocalizations or human voice. Also offers tools
for pitch tracking, spectral analysis, audio segmentation, self-similarity
matrices, modulation spectra, morphing, etc., as well as interactive web
apps for manually corrected pitch tracking and formant measurement.
Reference: Anikin (2019) <doi:10.3758/s13428-018-1095-7>.
Author: Andrey Anikin [aut, cre]
Maintainer: Andrey Anikin <rty.anik@rambler.ru>
Diff between soundgen versions 2.0.0 dated 2021-03-15 and 2.1.0 dated 2021-06-19
soundgen-2.0.0/soundgen/data/ipa.rda |only soundgen-2.0.0/soundgen/man/ipa.Rd |only soundgen-2.1.0/soundgen/DESCRIPTION | 12 soundgen-2.1.0/soundgen/MD5 | 108 +- soundgen-2.1.0/soundgen/NAMESPACE | 3 soundgen-2.1.0/soundgen/NEWS | 25 soundgen-2.1.0/soundgen/R/SSM.R | 22 soundgen-2.1.0/soundgen/R/analyze.R | 190 ++-- soundgen-2.1.0/soundgen/R/data.R | 35 soundgen-2.1.0/soundgen/R/formants.R | 32 soundgen-2.1.0/soundgen/R/modulationSpectrum.R | 230 +++- soundgen-2.1.0/soundgen/R/postprocessing.R | 3 soundgen-2.1.0/soundgen/R/presets.R | 7 soundgen-2.1.0/soundgen/R/shiftFormants.R |only soundgen-2.1.0/soundgen/R/smoothContours.R | 46 soundgen-2.1.0/soundgen/R/soundgen.R | 4 soundgen-2.1.0/soundgen/R/spectrogram.R | 6 soundgen-2.1.0/soundgen/R/utilities_analyze.R | 40 soundgen-2.1.0/soundgen/R/utilities_formants.R | 4 soundgen-2.1.0/soundgen/R/utilities_math.R | 88 + soundgen-2.1.0/soundgen/R/utilities_pitch_postprocessing.R | 470 +++++++++- soundgen-2.1.0/soundgen/R/utilities_soundgen.R | 66 - soundgen-2.1.0/soundgen/data/def_form.rda |binary soundgen-2.1.0/soundgen/data/defaults_analyze_pitchCand.rda |binary soundgen-2.1.0/soundgen/data/hillenbrand.rda |only soundgen-2.1.0/soundgen/inst/doc/acoustic_analysis.R | 32 soundgen-2.1.0/soundgen/inst/doc/acoustic_analysis.Rmd | 53 - soundgen-2.1.0/soundgen/inst/doc/acoustic_analysis.html | 400 ++++---- soundgen-2.1.0/soundgen/inst/doc/sound_generation.R | 11 soundgen-2.1.0/soundgen/inst/doc/sound_generation.Rmd | 11 soundgen-2.1.0/soundgen/inst/doc/sound_generation.html | 127 +- soundgen-2.1.0/soundgen/inst/shiny/formant_app/server.R | 274 +++-- soundgen-2.1.0/soundgen/inst/shiny/formant_app/ui.R | 46 soundgen-2.1.0/soundgen/inst/shiny/formant_app/www/formant_app_shinyjs.js | 5 soundgen-2.1.0/soundgen/inst/shiny/pitch_app/server.R | 238 +++-- soundgen-2.1.0/soundgen/inst/shiny/pitch_app/ui.R | 20 soundgen-2.1.0/soundgen/man/addFormants.Rd | 20 soundgen-2.1.0/soundgen/man/analyze.Rd | 67 - soundgen-2.1.0/soundgen/man/convert_sec_to_hms.Rd | 2 soundgen-2.1.0/soundgen/man/dot-analyze.Rd | 5 soundgen-2.1.0/soundgen/man/dot-modulationSpectrum.Rd | 16 soundgen-2.1.0/soundgen/man/dot-pitchDescriptives.Rd |only soundgen-2.1.0/soundgen/man/dot-shiftFormants.Rd |only soundgen-2.1.0/soundgen/man/downsample.Rd | 32 soundgen-2.1.0/soundgen/man/findInflections.Rd |only soundgen-2.1.0/soundgen/man/getAM.Rd |only soundgen-2.1.0/soundgen/man/getPrior.Rd | 6 soundgen-2.1.0/soundgen/man/getRough.Rd | 6 soundgen-2.1.0/soundgen/man/getSmoothContour.Rd | 23 soundgen-2.1.0/soundgen/man/hillenbrand.Rd |only soundgen-2.1.0/soundgen/man/modulationSpectrum.Rd | 123 +- soundgen-2.1.0/soundgen/man/pitchDescriptives.Rd |only soundgen-2.1.0/soundgen/man/pitchSmoothPraat.Rd | 7 soundgen-2.1.0/soundgen/man/rbind_fill.Rd |only soundgen-2.1.0/soundgen/man/readAudio.Rd | 2 soundgen-2.1.0/soundgen/man/reformatAnchors.Rd | 3 soundgen-2.1.0/soundgen/man/shiftFormants.Rd |only soundgen-2.1.0/soundgen/man/spectrogram.Rd | 2 soundgen-2.1.0/soundgen/man/timeSeriesSummary.Rd |only soundgen-2.1.0/soundgen/man/warpMatrix.Rd |only soundgen-2.1.0/soundgen/vignettes/acoustic_analysis.Rmd | 53 - soundgen-2.1.0/soundgen/vignettes/sound_generation.Rmd | 11 62 files changed, 2057 insertions(+), 929 deletions(-)
Title: Progressive Web App Support for Shiny
Description: Adds Progressive Web App support for Shiny apps, including
desktop and mobile installations.
Author: Pedro Silva [aut, cre]
Maintainer: Pedro Silva <pedrocoutinhosilva@gmail.com>
Diff between shiny.pwa versions 0.2.0 dated 2020-09-25 and 0.2.1 dated 2021-06-19
DESCRIPTION | 7 - LICENSE | 4 MD5 | 49 ++++---- NAMESPACE | 20 +-- NEWS.md |only R/dependencies.R | 116 ++++++++++---------- R/pwa.R | 136 ++++++++++++------------ R/templates.R | 232 ++++++++++++++++++++--------------------- R/validators.R | 132 +++++++++++------------ inst/pwa/manifest.json | 34 +++--- inst/pwa/offline.html | 44 +++---- inst/pwa/pwa-service-worker.js | 152 +++++++++++++------------- inst/pwa/register-worker.js | 10 - man/applyTemplate.Rd | 42 +++---- man/createDirectories.Rd | 44 +++---- man/createIcon.Rd | 50 ++++---- man/createManifest.Rd | 60 +++++----- man/createOfflinePage.Rd | 60 +++++----- man/createServiceWorker.Rd | 54 ++++----- man/generateFiles.Rd | 84 +++++++------- man/getTemplate.Rd | 28 ++-- man/loadDependencies.Rd | 54 ++++----- man/pwa.Rd | 122 ++++++++++----------- man/validateDomain.Rd | 50 ++++---- man/validateIcon.Rd | 50 ++++---- man/validateLocation.Rd | 52 ++++----- 26 files changed, 843 insertions(+), 843 deletions(-)
Title: Develop Text Prediction Models Based on N-Grams
Description: A framework for developing n-gram models for text prediction.
It provides data cleaning, data sampling, extracting tokens from text,
model generation, model evaluation and word prediction. For information on how n-gram models
work we referred to: "Speech and Language Processing"
<https://web.stanford.edu/~jurafsky/slp3/3.pdf>. For optimizing R code and
using R6 classes we referred to "Advanced R"
<https://adv-r.hadley.nz/r6.html>. For writing R extensions we referred to
"R Packages", <https://r-pkgs.org/index.html>.
Author: Nadir Latif [aut, cre] (<https://orcid.org/0000-0002-7543-7405>)
Maintainer: Nadir Latif <pakjiddat@gmail.com>
Diff between wordpredictor versions 0.0.1 dated 2021-06-14 and 0.0.2 dated 2021-06-19
DESCRIPTION | 9 MD5 | 34 - NEWS.md | 13 R/data-cleaner.R | 12 R/env-manager.R | 15 README.md | 4 inst/doc/features.R | 48 +- inst/doc/features.Rmd | 48 +- inst/doc/features.html | 410 ++++++++++--------- inst/doc/overview.R | 13 inst/doc/overview.Rmd | 16 inst/doc/overview.html | 130 +++--- man/DataCleaner.Rd | 24 - vignettes/features.Rmd | 48 +- vignettes/man/figures/VIGNETTES-tokenization-2-1.png |binary vignettes/man/figures/VIGNETTES-tokenization-3-1.png |binary vignettes/man/figures/coverage.png |only vignettes/man/figures/top_features.png |only vignettes/overview.Rmd | 16 19 files changed, 470 insertions(+), 370 deletions(-)
Title: Fast Fixed-Effects Estimations
Description: Fast and user-friendly estimation of econometric models with multiple fixed-effects. Includes ordinary least squares (OLS), generalized linear models (GLM) and the negative binomial.
The core of the package is based on optimized parallel C++ code, scaling especially well for large data sets. The method to obtain the fixed-effects coefficients is based on Berge (2018) <https://wwwen.uni.lu/content/download/110162/1299525/file/2018_13>.
Further provides tools to export and view the results of several estimations with intuitive design to cluster the standard-errors.
Author: Laurent Berge [aut, cre],
Sebastian Krantz [ctb],
Grant McDermott [ctb] (<https://orcid.org/0000-0001-7883-8573>)
Maintainer: Laurent Berge <laurent.berge@u-bordeaux.fr>
Diff between fixest versions 0.8.4 dated 2021-03-29 and 0.9.0 dated 2021-06-19
DESCRIPTION | 27 MD5 | 149 - NAMESPACE | 24 NEWS.md | 169 + R/Deprecated_funs.R | 2 R/ESTIMATION_FUNS.R | 291 +- R/Lagging.R | 14 R/Methods.R | 29 R/MiscFuns.R | 3899 ++++++++++--------------------------- R/RcppExports.R | 12 R/VCOV.R |only R/coefplot.R | 644 +++--- R/did.R |only R/etable.R | 1113 +++++++++- R/etable_aliases.R | 8 R/femlm.R | 29 R/fitstats.R |only R/fixest_env.R | 614 ++++- R/fixest_multi.R | 125 + R/index.R | 4 R/iplot.R |only R/onLoad.R | 17 README.md | 2 data/base_stagg.RData |only data/datalist | 1 inst/doc/exporting_tables.Rmd | 5 inst/doc/exporting_tables.html | 228 +- inst/doc/fixest_walkthrough.R | 180 - inst/doc/fixest_walkthrough.Rmd | 338 +-- inst/doc/fixest_walkthrough.html | 1566 +++++++------- inst/doc/multiple_estimations.Rmd | 5 inst/doc/multiple_estimations.html | 118 - inst/doc/standard_errors.Rmd | 5 inst/doc/standard_errors.html | 314 +- man/aggregate.fixest.Rd | 58 man/base_did.Rd | 2 man/base_stagg.Rd |only man/coef.fixest.Rd | 12 man/coef.fixest_multi.Rd |only man/coefplot.Rd | 134 - man/coeftable.Rd | 29 man/degrees_freedom.Rd |only man/dof.Rd | 4 man/etable.Rd | 146 + man/extraline_register.Rd |only man/feNmlm.Rd | 20 man/feglm.Rd | 42 man/femlm.Rd | 20 man/feols.Rd | 58 man/fitstat.Rd | 9 man/fitstat_register.Rd | 2 man/fixest.Rd | 4 man/fixest_startup_msg.Rd |only man/i.Rd | 66 man/model.matrix.fixest.Rd | 22 man/obs.Rd |only man/obs2remove.Rd | 2 man/print.fixest_fitstat.Rd | 2 man/r2.Rd | 2 man/resid.fixest_multi.Rd |only man/setFixest_coefplot.Rd | 17 man/setFixest_nthreads.Rd | 4 man/setFixest_se.Rd | 4 man/stepwise.Rd | 103 man/summary.fixest.Rd | 15 man/summary.fixest_multi.Rd | 8 man/sunab.Rd |only man/to_integer.Rd | 12 man/vcov.fixest.Rd | 4 man/wald.Rd | 4 src/Makevars | 2 src/Makevars.win | 2 src/RcppExports.cpp | 39 src/demeaning.cpp | 27 src/misc_funs.cpp | 154 + src/parallel_funs.cpp | 7 src/quf.cpp | 86 tests/fixest_tests.R | 107 - vignettes/exporting_tables.Rmd | 5 vignettes/fixest_walkthrough.Rmd | 338 +-- vignettes/multiple_estimations.Rmd | 5 vignettes/standard_errors.Rmd | 5 82 files changed, 6097 insertions(+), 5417 deletions(-)
Title: Functional Linear Mixed Models for Irregularly or Sparsely
Sampled Data
Description: Estimation of functional linear mixed models for irregularly or
sparsely sampled data based on functional principal component analysis.
Author: Jona Cederbaum [aut, cre],
Alexander Volkmann [aut],
Almond Stöcker [aut]
Maintainer: Jona Cederbaum <Jona.Cederbaum@gmail.com>
Diff between sparseFLMM versions 0.4.0 dated 2021-01-17 and 0.4.1 dated 2021-06-19
DESCRIPTION | 6 MD5 | 28 NAMESPACE | 48 NEWS.md | 3 R/call_all_functions.R | 2344 +++++++++++----------- R/cov_estimation_tri_constr_nest.R | 434 ++-- R/fpc_estimation.R | 1082 +++++----- R/fpc_famm_estimation.R | 2 man/Predict.matrix.symm.smooth.Rd | 46 man/acoustic.Rd | 106 man/acoustic_subset.Rd | 50 man/make_summation_matrix.Rd | 90 man/smooth.construct.symm.smooth.spec.Rd | 336 +-- man/sparseFLMM.Rd | 946 ++++---- tests/smooth.construct.symm.smooth.spec_example.R | 220 +- 15 files changed, 2872 insertions(+), 2869 deletions(-)
Title: Read Spectrometric Data and Metadata
Description: Parse various reflectance/transmittance/absorbance spectra file
formats to extract spectral data and metadata, as described in Gruson, White
& Maia (2019) <doi:10.21105/joss.01857>. Among other formats, it can import
files from 'Avantes' <https://www.avantes.com/>, 'CRAIC'
<https://www.microspectra.com/>, and 'OceanInsight' (formerly 'OceanOptics')
<https://www.oceaninsight.com/> brands.
Author: Hugo Gruson [cre, aut, cph] (<https://orcid.org/0000-0002-4094-1476>),
Rafael Maia [aut, cph] (<https://orcid.org/0000-0002-7563-9795>),
Thomas White [aut, cph] (<https://orcid.org/0000-0002-3976-1734>),
Kotya Karapetyan [ctb, cph] (Author of the MATLAB script to read
AvaSoft7 binary files (CC-BY))
Maintainer: Hugo Gruson <hugo.gruson+R@normalesup.org>
Diff between lightr versions 1.4 dated 2021-03-21 and 1.5.0 dated 2021-06-19
lightr-1.4/lightr/tests/testthat/test_multicores.R |only lightr-1.5.0/lightr/DESCRIPTION | 6 +- lightr-1.5.0/lightr/MD5 | 43 +++++++++---------- lightr-1.5.0/lightr/NEWS.md | 11 +++++ lightr-1.5.0/lightr/R/convert_tocsv.R | 46 ++++++++++++--------- lightr-1.5.0/lightr/R/get_metadata.R | 8 --- lightr-1.5.0/lightr/R/get_spec.R | 10 ---- lightr-1.5.0/lightr/build/partial.rdb |binary lightr-1.5.0/lightr/build/vignette.rds |binary lightr-1.5.0/lightr/inst/doc/batch_import.Rmd | 6 +- lightr-1.5.0/lightr/inst/doc/batch_import.html | 9 ++-- lightr-1.5.0/lightr/inst/doc/renormalise.Rmd | 2 lightr-1.5.0/lightr/inst/doc/renormalise.html | 5 +- lightr-1.5.0/lightr/inst/doc/true_example.html | 7 +-- lightr-1.5.0/lightr/man/lightr-package.Rd | 7 --- lightr-1.5.0/lightr/man/lr_convert_tocsv.Rd | 15 +++--- lightr-1.5.0/lightr/man/lr_get_metadata.Rd | 4 - lightr-1.5.0/lightr/man/lr_get_spec.Rd | 4 - lightr-1.5.0/lightr/tests/testthat/test_convert.R | 22 +++++----- lightr-1.5.0/lightr/tests/testthat/test_getspec.R | 34 ++++++++------- lightr-1.5.0/lightr/tests/testthat/test_metadata.R | 16 +++---- lightr-1.5.0/lightr/vignettes/batch_import.Rmd | 6 +- lightr-1.5.0/lightr/vignettes/renormalise.Rmd | 2 23 files changed, 131 insertions(+), 132 deletions(-)
Title: Linear Discriminant Function and Canonical Correlation Analysis
Description: Produces SPSS- and SAS-like output for linear discriminant
function analysis and canonical correlation analysis. The methods are described in
Manly & Alberto (2017, ISBN:9781498728966),
Tabachnik & Fidell (2013, ISBN-10:0-205-89081-4), and
Venables & Ripley (2002, ISBN:0-387-95457-0).
Author: Brian P. O'Connor
Maintainer: Brian P. O'Connor <brian.oconnor@ubc.ca>
Diff between DFA.CANCOR versions 0.2.0 dated 2020-11-06 and 0.2.1 dated 2021-06-19
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/DFA.R | 12 ++++++++---- R/boc.R | 7 +++++-- data/data_CCA_De_Leo.rda |binary 5 files changed, 21 insertions(+), 14 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-07-12 0.2.0
Title: Create Area-Proportional Venn Diagrams from Biological Lists
Description: Creates an area-proportional Venn diagram of 2 or 3 circles. 'BioVenn' is the only R package that can automatically generate an accurate area-proportional Venn diagram by having only lists of (biological) identifiers as input. Also offers the option to map Entrez and/or Affymetrix IDs to Ensembl IDs. In SVG mode, text and numbers can be dragged and dropped. Based on the BioVenn web interface available at <https://www.biovenn.nl>. Hulsen (2021) <doi:10.3233/DS-210032>.
Author: Tim Hulsen [aut, cre] (<https://orcid.org/0000-0002-0208-8443>)
Maintainer: Tim Hulsen <thulsen@gmail.com>
Diff between BioVenn versions 1.1.2 dated 2021-03-31 and 1.1.3 dated 2021-06-19
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/draw.venn.R | 3 ++- inst/CITATION | 8 ++++---- man/draw.venn.Rd | 3 ++- 5 files changed, 15 insertions(+), 13 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-13 3.2.0
2020-05-07 3.1.1
2016-02-01 3.0-1
2014-11-10 2.9-3
2014-08-23 2.9-2
2014-01-03 2.8-8
2013-12-02 2.8-7
2013-03-17 2.7-06
2013-02-23 2.7-05
2012-09-11 2.7-04
2012-07-09 2.7-03
2012-02-13 2.6-04
2012-01-19 2.6-03
2012-01-02 2.6-02
2011-02-20 2.4-01
2010-11-07 2.3-02
2010-03-13 2.2-11
2009-07-01 2.0-5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-12-09 1.0-1
2016-03-29 1.00
2015-07-08 0.96-3
2013-05-04 0.96-2
2012-11-06 0.96-1
2012-05-08 0.95
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-05-31 1.0.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-12-15 1.0