Title: Catalogue of Life Client
Description: Client for the Catalogue of Life ('CoL')
(<https://www.catalogueoflife.org/>); based on the new
'CoL' service, not the old one. Catalogue of Life is a database of
taxonomic names. Includes functions for each
of the API methods, including searching for names, and more.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
rOpenSci [fnd] (https://ropensci.org/)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rcol versions 0.1.0 dated 2021-02-05 and 0.2.0 dated 2021-07-02
DESCRIPTION | 7 +++---- LICENSE | 2 +- MD5 | 14 +++++++------- NEWS.md | 8 ++++++++ R/zzz.R | 3 ++- tests/fixtures/cp_classification.json | 2 +- tests/testthat/test-cp_classification.R | 3 +-- tests/testthat/test-cp_ds.R | 10 +++++----- 8 files changed, 28 insertions(+), 21 deletions(-)
Title: Rapid Realistic Routing with 'R5'
Description: Rapid realistic routing on multimodal transport networks (walk,
bike, public transport and car) using 'R5', the Rapid Realistic
Routing on Real-world and Reimagined networks
<https://github.com/conveyal/r5>. The package allows users to
generate detailed routing analysis or calculate travel time matrices
using seamless parallel computing on top of the R5 Java machine.
Author: Marcus Saraiva [aut] (<https://orcid.org/0000-0001-6218-2338>),
Rafael H. M. Pereira [aut, cre]
(<https://orcid.org/0000-0003-2125-7465>),
Daniel Herszenhut [aut] (<https://orcid.org/0000-0001-8066-1105>),
Carlos Kaue Vieira Braga [aut]
(<https://orcid.org/0000-0002-6104-7297>),
Matthew Wigginton Conway [aut]
(<https://orcid.org/0000-0002-1210-2982>),
Ipea - Institue for Applied Economic Research [cph, fnd]
Maintainer: Rafael H. M. Pereira <rafa.pereira.br@gmail.com>
Diff between r5r versions 0.4.0 dated 2021-04-16 and 0.5.0 dated 2021-07-02
r5r-0.4.0/r5r/inst/jar/r5r_0_3_4.jar |only r5r-0.5.0/r5r/DESCRIPTION | 12 r5r-0.5.0/r5r/MD5 | 89 - r5r-0.5.0/r5r/NAMESPACE | 2 r5r-0.5.0/r5r/NEWS.md | 32 r5r-0.5.0/r5r/R/accessibility.R |only r5r-0.5.0/r5r/R/detailed_itineraries.R | 691 ++++++------ r5r-0.5.0/r5r/R/download_r5.R | 6 r5r-0.5.0/r5r/R/elevation_utils.R |only r5r-0.5.0/r5r/R/find_snap.R |only r5r-0.5.0/r5r/R/setup_r5.R | 31 r5r-0.5.0/r5r/R/travel_time_matrix.R | 534 ++++----- r5r-0.5.0/r5r/R/utils.R | 842 +++++++-------- r5r-0.5.0/r5r/R/zzz.R | 76 - r5r-0.5.0/r5r/inst/doc/calculating_accessibility.R | 56 r5r-0.5.0/r5r/inst/doc/calculating_accessibility.Rmd | 336 ++--- r5r-0.5.0/r5r/inst/doc/calculating_accessibility.html | 123 +- r5r-0.5.0/r5r/inst/doc/calculating_isochrones.html | 4 r5r-0.5.0/r5r/inst/doc/intro_to_r5r.html | 16 r5r-0.5.0/r5r/inst/extdata/metadata_r5r.csv |only r5r-0.5.0/r5r/inst/extdata/poa/poa.zip |binary r5r-0.5.0/r5r/inst/extdata/poa/poa_elevation.tif |only r5r-0.5.0/r5r/inst/jar/r5r_0_5_0.jar |only r5r-0.5.0/r5r/man/accessibility.Rd |only r5r-0.5.0/r5r/man/apply_elevation.Rd |only r5r-0.5.0/r5r/man/assert_decay_function.Rd |only r5r-0.5.0/r5r/man/assert_points_input.Rd | 2 r5r-0.5.0/r5r/man/check_connection.Rd | 74 - r5r-0.5.0/r5r/man/detailed_itineraries.Rd | 14 r5r-0.5.0/r5r/man/download_metadata.Rd | 2 r5r-0.5.0/r5r/man/download_r5.Rd | 4 r5r-0.5.0/r5r/man/find_snap.Rd |only r5r-0.5.0/r5r/man/posix_to_string.Rd | 2 r5r-0.5.0/r5r/man/select_mode.Rd | 2 r5r-0.5.0/r5r/man/set_max_lts.Rd | 2 r5r-0.5.0/r5r/man/set_max_rides.Rd | 2 r5r-0.5.0/r5r/man/set_max_street_time.Rd | 2 r5r-0.5.0/r5r/man/set_n_threads.Rd | 2 r5r-0.5.0/r5r/man/set_speed.Rd | 2 r5r-0.5.0/r5r/man/set_suboptimal_minutes.Rd | 2 r5r-0.5.0/r5r/man/set_verbose.Rd | 2 r5r-0.5.0/r5r/man/setup_r5.Rd | 12 r5r-0.5.0/r5r/man/stop_r5.Rd | 2 r5r-0.5.0/r5r/man/street_network_to_sf.Rd | 2 r5r-0.5.0/r5r/man/tobler_hiking.Rd |only r5r-0.5.0/r5r/man/travel_time_matrix.Rd | 14 r5r-0.5.0/r5r/tests/testthat/test-accessibility.R |only r5r-0.5.0/r5r/tests/testthat/test-detailed_itineraries.R | 26 r5r-0.5.0/r5r/tests/testthat/test-elevation_utils.R |only r5r-0.5.0/r5r/tests/testthat/test-find_snap.R |only r5r-0.5.0/r5r/tests/testthat/test-setup_r5.R | 94 - r5r-0.5.0/r5r/tests/testthat/test-travel_time_matrix.R | 6 r5r-0.5.0/r5r/vignettes/calculating_accessibility.Rmd | 336 ++--- 53 files changed, 1804 insertions(+), 1652 deletions(-)
Title: Monotonic Binning for Credit Rating Models
Description: Performs monotonic binning of numeric risk factor in credit rating models (PD, LGD, EAD)
development. All functions handle both binary and continuous target variable.
Functions that use isotonic regression in the first stage of binning process have an additional
feature for correction of minimum percentage of observations and minimum target rate per bin.
Additionally, monotonic trend can be identified based on raw data or, if known in advance,
forced by functions' argument. Missing values and other possible special values are treated
separately from so-called complete cases.
Author: Andrija Djurovic [aut, cre]
Maintainer: Andrija Djurovic <djandrija@gmail.com>
Diff between monobin versions 0.0.9 dated 2021-05-31 and 0.1.0 dated 2021-07-02
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- R/01_PCT_BINNING.R | 4 ++-- R/02_ISO_BINNING.R | 4 ++-- R/03_WOE_BINNING.R | 4 ++-- R/04_CUM_BINNING.R | 4 ++-- R/05_STS_BINNING.R | 10 +++++----- R/06_NDR_BINNING.R | 4 ++-- data/gcd.rda |binary 9 files changed, 26 insertions(+), 26 deletions(-)
Title: Easily Work with 'Font Awesome' Icons
Description: Easily and flexibly insert 'Font Awesome' icons into 'R Markdown'
documents and 'Shiny' apps. These icons can be inserted into HTML content
through inline 'SVG' tags or 'i' tags. There is also a utility function for
exporting 'Font Awesome' icons as 'PNG' images for those situations where
raster graphics are needed.
Author: Richard Iannone [aut, cre] (<https://orcid.org/0000-0003-3925-190X>),
Christophe Dervieux [ctb] (<https://orcid.org/0000-0003-4474-2498>),
Winston Chang [ctb],
Dave Gandy [ctb, cph] (Font-Awesome font),
RStudio [cph, fnd]
Maintainer: Richard Iannone <rich@rstudio.com>
Diff between fontawesome versions 0.2.1 dated 2021-04-23 and 0.2.2 dated 2021-07-02
DESCRIPTION | 8 ++-- MD5 | 17 +++++---- NEWS.md | 6 +++ R/fa_tbl.R | 2 - R/fa_v4_v5.R | 2 - inst/fontawesome/css/all.css | 6 +-- inst/fontawesome/css/all.min.css | 2 - inst/fontawesome/webfonts/fa-brands-400.ttf |only inst/fontawesome/webfonts/fa-regular-400.ttf |only inst/fontawesome/webfonts/fa-solid-900.ttf |only tests/testthat/test-fa_icon.R | 50 +++++++++++++++++++++++++-- 11 files changed, 73 insertions(+), 20 deletions(-)
Title: Chandler-Bate Sandwich Loglikelihood Adjustment
Description: Performs adjustments of a user-supplied independence loglikelihood
function using a robust sandwich estimator of the parameter covariance
matrix, based on the methodology in Chandler and Bate (2007)
<doi:10.1093/biomet/asm015>. This can be used for cluster correlated data
when interest lies in the parameters of the marginal distributions or for
performing inferences that are robust to certain types of model
misspecification. Functions for profiling the adjusted loglikelihoods are
also provided, as are functions for calculating and plotting confidence
intervals, for single model parameters, and confidence regions, for pairs
of model parameters. Nested models can be compared using an adjusted
likelihood ratio test.
Author: Paul J. Northrop [aut, cre, cph],
Richard E. Chandler [aut, cph]
Maintainer: Paul J. Northrop <p.northrop@ucl.ac.uk>
Diff between chandwich versions 1.1.3 dated 2020-11-07 and 1.1.4 dated 2021-07-02
DESCRIPTION | 10 MD5 | 45 - NEWS.md | 16 R/adjust_loglik.R | 7 R/chandwich.R | 17 R/compare_models.R | 47 + R/confidence_intervals.R | 163 ++++-- R/dgev.R | 4 README.md | 2 build/partial.rdb |only build/vignette.rds |binary inst/doc/chandwich-vignette.Rmd | 4 inst/doc/chandwich-vignette.html | 713 +++++++++++------------------- man/adjust_loglik.Rd | 7 man/anova.chandwich.Rd | 7 man/chandwich.Rd | 15 man/compare_models.Rd | 14 man/conf_intervals.Rd | 18 man/confint.chandwich.Rd | 17 man/log_gev.Rd | 4 man/owtemps.Rd | 2 tests/testthat/test-compare_to_sandwich.R | 324 ++++++------- vignettes/chandwich-vignette.Rmd | 4 vignettes/chandwich.bib | 2 24 files changed, 701 insertions(+), 741 deletions(-)
Title: Asynchronous Disk-Based Representation of Massive Data
Description: Storing very large data objects on a local drive, while still making it possible to manipulate the data in an efficient manner.
Author: Adam Black [aut, cre],
Martijn Schuemie [aut],
Marc A. Suchard [aut],
Observational Health Data Science and Informatics [cph]
Maintainer: Adam Black <black@ohdsi.org>
Diff between Andromeda versions 0.4.1 dated 2021-05-04 and 0.5.0 dated 2021-07-02
DESCRIPTION | 10 +++++----- MD5 | 29 +++++++++++++++-------------- NAMESPACE | 2 ++ NEWS.md | 11 +++++++++++ R/LoadingSaving.R | 4 ++-- R/Object.R | 4 +++- R/Operations.R | 22 +++++++++++++++++----- README.md | 7 +++---- inst/WORDLIST |only inst/doc/UsingAndromeda.pdf |binary man/restoreDate.Rd | 2 +- man/restorePosixct.Rd | 2 +- tests/testthat/test-dates.R | 29 ++++++++++++++++++++--------- tests/testthat/test-indices.R | 6 ++++++ tests/testthat/test-loadingSaving.R | 16 +++++++++++++++- tests/testthat/test-object.R | 4 ++++ 16 files changed, 105 insertions(+), 43 deletions(-)
Title: Short Sprints
Description: Create short sprint (<6sec) profiles using the split times or the radar gun data.
Mono-exponential equation is used to estimate maximal sprinting speed (MSS), relative acceleration (TAU),
and other parameters such us maximal acceleration (MAC) and maximal relative power (PMAX). These parameters
can be used to predict kinematic and kinetics variables and to compare individuals. The modeling method utilized
in this package is based on the works of Chelly SM, Denis C. (2001) <doi: 10.1097/00005768-200102000-00024>,
Clark KP, Rieger RH, Bruno RF, Stearne DJ. (2017) <doi: 10.1519/JSC.0000000000002081>,
Furusawa K, Hill AV, Parkinson JL (1927) <doi: 10.1098/rspb.1927.0035>,
Greene PR. (1986) <doi: 10.1016/0025-5564(86)90063-5>, and
Samozino P. (2018) <doi: 10.1007/978-3-319-05633-3_11>.
Author: Mladen Jovanović [aut, cre],
Jason D. Vescovi [dtc]
Maintainer: Mladen Jovanović <coach.mladen.jovanovic@gmail.com>
Diff between shorts versions 1.1.4 dated 2020-11-29 and 1.1.5 dated 2021-07-02
DESCRIPTION | 6 MD5 | 52 - NAMESPACE | 2 NEWS.md | 9 R/get_FV_profile.R | 12 R/get_air_resistance.R | 6 R/mixed_model_using_radar.R | 23 R/mixed_model_using_splits.R | 219 +++++ R/model_using_radar.R | 13 R/model_using_splits.R | 180 ++++ R/predict_functions.R | 18 R/shorts_S3.R | 33 R/shorts_constructors.R | 1 R/shorts_model_fit.R | 6 README.md | 107 +- inst/CITATION | 8 inst/doc/sprint-corrections.R | 16 inst/doc/sprint-corrections.Rmd | 16 inst/doc/sprint-corrections.html | 1610 ++++++++++++++++----------------------- man/get_FV_profile.Rd | 3 man/get_air_resistance.Rd | 2 man/mixed_model_radar.Rd | 3 man/mixed_model_split_times.Rd | 27 man/model_split_times.Rd | 29 man/plot.shorts_fv_profile.Rd | 3 man/print.shorts_fv_profile.Rd | 3 vignettes/sprint-corrections.Rmd | 16 27 files changed, 1323 insertions(+), 1100 deletions(-)
Title: Utilities for Working with Google APIs
Description: Provides utilities for working with Google APIs
<https://developers.google.com/apis-explorer>. This includes
functions and classes for handling common credential types and for
preparing, executing, and processing HTTP requests.
Author: Jennifer Bryan [aut, cre] (<https://orcid.org/0000-0002-6983-2759>),
Craig Citro [aut],
Hadley Wickham [aut] (<https://orcid.org/0000-0003-4757-117X>),
Google Inc [cph],
RStudio [cph, fnd]
Maintainer: Jennifer Bryan <jenny@rstudio.com>
Diff between gargle versions 1.1.0 dated 2021-04-02 and 1.2.0 dated 2021-07-02
gargle-1.1.0/gargle/R/conditions.R |only gargle-1.1.0/gargle/R/ui.R |only gargle-1.1.0/gargle/tests/testthat/_snaps/ui.md |only gargle-1.1.0/gargle/tests/testthat/test-ui.R |only gargle-1.2.0/gargle/DESCRIPTION | 16 gargle-1.2.0/gargle/MD5 | 146 +++-- gargle-1.2.0/gargle/NAMESPACE | 8 gargle-1.2.0/gargle/NEWS.md | 24 gargle-1.2.0/gargle/R/AuthState-class.R | 3 gargle-1.2.0/gargle/R/Gargle-class.R | 22 gargle-1.2.0/gargle/R/credential-function-registry.R | 11 gargle-1.2.0/gargle/R/credentials_app_default.R | 40 - gargle-1.2.0/gargle/R/credentials_byo_oauth2.R | 2 gargle-1.2.0/gargle/R/credentials_external_account.R |only gargle-1.2.0/gargle/R/credentials_gce.R | 8 gargle-1.2.0/gargle/R/credentials_service_account.R | 2 gargle-1.2.0/gargle/R/credentials_user_oauth2.R | 12 gargle-1.2.0/gargle/R/gargle-package.R | 2 gargle-1.2.0/gargle/R/inside-the-house.R | 17 gargle-1.2.0/gargle/R/oauth-app.R | 2 gargle-1.2.0/gargle/R/oauth-cache.R | 145 +++-- gargle-1.2.0/gargle/R/oauth-refresh.R | 27 - gargle-1.2.0/gargle/R/request-make.R | 2 gargle-1.2.0/gargle/R/request_retry.R | 17 gargle-1.2.0/gargle/R/response_process.R | 104 ++- gargle-1.2.0/gargle/R/roxygen-templates.R | 33 - gargle-1.2.0/gargle/R/secret.R | 6 gargle-1.2.0/gargle/R/token-info.R | 12 gargle-1.2.0/gargle/R/utils-ui.R |only gargle-1.2.0/gargle/R/utils.R | 4 gargle-1.2.0/gargle/README.md | 6 gargle-1.2.0/gargle/build/vignette.rds |binary gargle-1.2.0/gargle/inst/WORDLIST | 8 gargle-1.2.0/gargle/inst/doc/auth-from-web.Rmd | 12 gargle-1.2.0/gargle/inst/doc/auth-from-web.html | 5 gargle-1.2.0/gargle/inst/doc/get-api-credentials.Rmd | 60 +- gargle-1.2.0/gargle/inst/doc/get-api-credentials.html | 30 - gargle-1.2.0/gargle/inst/doc/how-gargle-gets-tokens.R | 9 gargle-1.2.0/gargle/inst/doc/how-gargle-gets-tokens.Rmd | 52 + gargle-1.2.0/gargle/inst/doc/how-gargle-gets-tokens.html | 262 +++++----- gargle-1.2.0/gargle/inst/doc/non-interactive-auth.R | 20 gargle-1.2.0/gargle/inst/doc/non-interactive-auth.Rmd | 43 + gargle-1.2.0/gargle/inst/doc/non-interactive-auth.html | 124 ++-- gargle-1.2.0/gargle/inst/doc/troubleshooting.Rmd | 2 gargle-1.2.0/gargle/inst/doc/troubleshooting.html | 2 gargle-1.2.0/gargle/man/GceToken.Rd | 1 gargle-1.2.0/gargle/man/WifToken.Rd |only gargle-1.2.0/gargle/man/bulletize.Rd |only gargle-1.2.0/gargle/man/credentials_app_default.Rd | 29 - gargle-1.2.0/gargle/man/credentials_byo_oauth2.Rd | 5 gargle-1.2.0/gargle/man/credentials_external_account.Rd |only gargle-1.2.0/gargle/man/credentials_gce.Rd | 5 gargle-1.2.0/gargle/man/credentials_service_account.Rd | 8 gargle-1.2.0/gargle/man/credentials_user_oauth2.Rd | 16 gargle-1.2.0/gargle/man/figures |only gargle-1.2.0/gargle/man/gargle2.0_token.Rd | 6 gargle-1.2.0/gargle/man/gargle_map_cli.Rd |only gargle-1.2.0/gargle/man/gargle_options.Rd | 4 gargle-1.2.0/gargle/man/oauth_external_token.Rd |only gargle-1.2.0/gargle/man/request_retry.Rd | 3 gargle-1.2.0/gargle/man/token_fetch.Rd | 5 gargle-1.2.0/gargle/tests/testthat/_snaps/Gargle-class.md | 50 - gargle-1.2.0/gargle/tests/testthat/_snaps/inside-the-house.md |only gargle-1.2.0/gargle/tests/testthat/_snaps/oauth-cache.md | 94 ++- gargle-1.2.0/gargle/tests/testthat/_snaps/oauth-refresh.md |only gargle-1.2.0/gargle/tests/testthat/_snaps/request-develop.md | 6 gargle-1.2.0/gargle/tests/testthat/_snaps/request_retry.md | 16 gargle-1.2.0/gargle/tests/testthat/_snaps/response_process.md | 77 +- gargle-1.2.0/gargle/tests/testthat/_snaps/utils-ui.md |only gargle-1.2.0/gargle/tests/testthat/test-Gargle-class.R | 44 - gargle-1.2.0/gargle/tests/testthat/test-inside-the-house.R | 9 gargle-1.2.0/gargle/tests/testthat/test-oauth-cache.R | 33 + gargle-1.2.0/gargle/tests/testthat/test-oauth-refresh.R |only gargle-1.2.0/gargle/tests/testthat/test-utils-ui.R |only gargle-1.2.0/gargle/vignettes/auth-from-web.Rmd | 12 gargle-1.2.0/gargle/vignettes/get-api-credentials.Rmd | 60 +- gargle-1.2.0/gargle/vignettes/how-gargle-gets-tokens.Rmd | 52 + gargle-1.2.0/gargle/vignettes/non-interactive-auth.Rmd | 43 + gargle-1.2.0/gargle/vignettes/troubleshooting.Rmd | 2 79 files changed, 1159 insertions(+), 721 deletions(-)
Title: A Collection of Robust Statistical Methods
Description: A collection of robust statistical methods based on Wilcox' WRS functions. It implements robust t-tests (independent and dependent samples), robust ANOVA (including between-within subject designs), quantile ANOVA, robust correlation, robust mediation, and nonparametric ANCOVA models based on robust location measures.
Author: Patrick Mair [cre, aut],
Rand Wilcox [aut],
Indrajeet Patil [ctb]
Maintainer: Patrick Mair <mair@fas.harvard.edu>
Diff between WRS2 versions 1.1-1 dated 2021-02-15 and 1.1-2 dated 2021-07-02
DESCRIPTION | 14 +- MD5 | 182 ++++++++++++++--------------- NAMESPACE | 1 R/Dqcomhd.R | 8 - R/Qanova.R | 18 +- R/ZYmediate.R | 28 ++-- R/akp.effect.R | 18 +- R/ancboot.R | 20 +-- R/ancova.R | 38 +++--- R/binband.R | 12 - R/bwtrim.R | 24 +-- R/dep.effect.R | 23 ++- R/disc2com.R | 2 R/discANOVA.R | 14 +- R/discmcp.R | 20 +-- R/discstep.R | 28 ++-- R/lincon.R | 18 +- R/mcp2a.R | 34 ++--- R/mcp2atm.R | 34 ++--- R/mcppb20.R | 22 +-- R/med1way.R | 16 +- R/med2way.R | 8 - R/medpb2.R | 18 +- R/mest.R | 4 R/mestse.R | 4 R/mom.R | 4 R/msmedse.R | 3 R/onesampb.R | 10 - R/onestep.R | 4 R/pairdepb.R | 12 - R/pb2gen.R | 14 +- R/pbad2way.R | 36 ++--- R/pball.R | 8 - R/pbcor.R | 8 - R/qcomhd.R | 10 - R/rmanova.R | 16 +- R/rmanovab.R | 12 - R/rmmcp.R | 8 - R/rungen.R | 6 R/runmbo.R | 6 R/runmean.R | 4 R/sppba.R | 26 ++-- R/sppbb.R | 2 R/sppbi.R | 26 ++-- R/t1way.R | 26 ++-- R/t1way.effect.R | 2 R/t1waybt.R | 16 +- R/t2way.R | 8 - R/t3way.R | 18 +- R/trimci.R | 2 R/trimcibt.R |only R/trimse.R | 2 R/twocor.R | 16 +- R/twopcor.R | 12 - R/utilities.R | 326 ++++++++++++++++++++++++++--------------------------- R/winall.R | 4 R/wincor.R | 4 R/winmean.R | 4 R/winse.R | 4 R/winval.R | 4 R/winvar.R | 2 R/winvarN.R | 2 R/wmcpAKP.R | 9 - R/yuen.R | 12 - R/yuen.effect.ci.R | 6 R/yuen1.R | 4 R/yuenbt.R | 14 +- R/yuend.R | 6 build/vignette.rds |binary inst/NEWS.Rd | 80 +++++++------ inst/doc/WRS2.pdf |binary man/ZYmediate.Rd | 9 - man/ancova.Rd | 9 - man/binband.Rd | 22 +-- man/bwtrim.Rd | 33 ++--- man/med1way.Rd | 9 - man/med2way.Rd | 13 +- man/onesampb.Rd | 11 + man/pbcor.Rd | 27 ++-- man/qanova.Rd | 5 man/rmanova.Rd | 7 - man/rmanovab.Rd | 9 - man/runmean.Rd | 19 +-- man/t1way.Rd | 11 + man/t1waybt.Rd | 11 + man/t2way.Rd | 21 +-- man/t3way.Rd | 7 - man/trimcibt.Rd |only man/trimse.Rd | 47 ++++--- man/twocor.Rd | 13 +- man/wmcpAKP.Rd | 7 - man/yuen.Rd | 25 ++-- man/yuend.Rd | 24 ++- 93 files changed, 913 insertions(+), 832 deletions(-)
Title: Generate QRcodes with R
Description: Create QRcode in R.
Author: Victor Teh [aut],
Thierry Onkelinx [ctb, cre] (<https://orcid.org/0000-0001-8804-4216>)
Maintainer: Thierry Onkelinx <thierry.onkelinx@inbo.be>
Diff between qrcode versions 0.1.1 dated 2015-08-23 and 0.1.3 dated 2021-07-02
qrcode-0.1.1/qrcode/data |only qrcode-0.1.1/qrcode/man/qrCodeSpec.Rd |only qrcode-0.1.3/qrcode/DESCRIPTION | 37 ++ qrcode-0.1.3/qrcode/MD5 | 62 ++-- qrcode-0.1.3/qrcode/NAMESPACE | 30 +- qrcode-0.1.3/qrcode/NEWS.md |only qrcode-0.1.3/qrcode/R/DataStringBinary.R | 193 +++++++++------ qrcode-0.1.3/qrcode/R/ECgenerator.R | 96 ++++--- qrcode-0.1.3/qrcode/R/formatPolyGen.R | 56 ++-- qrcode-0.1.3/qrcode/R/generate_svg.R |only qrcode-0.1.3/qrcode/R/polynomialGenerator.R | 91 ++----- qrcode-0.1.3/qrcode/R/qrCodeSpec.R | 59 ++-- qrcode-0.1.3/qrcode/R/qrFillUpMatrix.R | 316 +++++++++++++------------ qrcode-0.1.3/qrcode/R/qrInitMatrix.R | 161 +++++++----- qrcode-0.1.3/qrcode/R/qrInterleave.R | 118 +++++---- qrcode-0.1.3/qrcode/R/qrMask.R | 182 +++++++------- qrcode-0.1.3/qrcode/R/qrVersionInfo.R | 68 +++-- qrcode-0.1.3/qrcode/R/qrcode_gen.R | 133 ++++++---- qrcode-0.1.3/qrcode/R/sysdata.rda |only qrcode-0.1.3/qrcode/R/versionPolyGen.R | 60 ++-- qrcode-0.1.3/qrcode/README.md | 49 ++- qrcode-0.1.3/qrcode/man/DataStringBinary.Rd | 33 +- qrcode-0.1.3/qrcode/man/ECgenerator.Rd | 51 +--- qrcode-0.1.3/qrcode/man/figures |only qrcode-0.1.3/qrcode/man/formatPolyGen.Rd | 33 +- qrcode-0.1.3/qrcode/man/generate_svg.Rd |only qrcode-0.1.3/qrcode/man/polynomialGenerator.Rd | 35 +- qrcode-0.1.3/qrcode/man/qrFillUpMatrix.Rd | 43 +-- qrcode-0.1.3/qrcode/man/qrInitMatrix.Rd | 30 +- qrcode-0.1.3/qrcode/man/qrInterleave.Rd | 45 +-- qrcode-0.1.3/qrcode/man/qrMask.Rd | 67 ++--- qrcode-0.1.3/qrcode/man/qrVersionInfo.Rd | 41 +-- qrcode-0.1.3/qrcode/man/qrcode_gen.Rd | 101 ++++--- qrcode-0.1.3/qrcode/man/versionPolyGen.Rd | 41 +-- qrcode-0.1.3/qrcode/tests |only 35 files changed, 1211 insertions(+), 1020 deletions(-)
Title: Statistical Process Control for Stochastic Textured Surfaces
Description: Provides statistical process control tools for stochastic
textured surfaces. The current version supports the following tools:
(1) generic modeling of stochastic textured surfaces.
(2) local defect monitoring and diagnostics in stochastic
textured surfaces, which was proposed by Bui and Apley (2018a)
<doi:10.1080/00401706.2017.1302362>.
(3) global change monitoring in the nature of stochastic
textured surfaces, which was proposed by Bui and Apley (2018b)
<doi:10.1080/00224065.2018.1507559>.
(4) computation of dissimilarity matrix of stochastic textured
surface images, which was proposed by Bui and Apley (2019b)
<doi:10.1016/j.csda.2019.01.019>.
Author: Anh Tuan Bui [aut, cre] and Daniel W. Apley [ths]
Maintainer: Anh Bui <atbui@u.northwestern.edu>
Diff between spc4sts versions 0.5.2 dated 2019-12-09 and 0.5.4 dated 2021-07-02
DESCRIPTION | 7 +++---- MD5 | 10 +++++----- R/climit.R | 6 ++---- inst/CITATION | 15 ++++++++------- man/climit.Rd | 2 +- man/spc4sts-package.Rd | 11 ++++++++++- 6 files changed, 29 insertions(+), 22 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-05-09 1.0.0
2021-02-27 0.7.3
2020-12-04 0.7.2
2020-04-17 0.7.1
Title: Compute the Label Error of Peak Calls
Description: Chromatin immunoprecipitation DNA sequencing results in genomic
tracks that show enriched regions or peaks where proteins are bound.
This package implements fast C code that computes the true and false
positives with respect to a database of annotated region labels.
Author: Toby Dylan Hocking
Maintainer: Toby Dylan Hocking <toby.hocking@r-project.org>
Diff between PeakError versions 2017.06.19 dated 2017-06-19 and 2021.7.1 dated 2021-07-02
PeakError-2017.06.19/PeakError/tests/script.R |only PeakError-2021.7.1/PeakError/DESCRIPTION | 10 +++++----- PeakError-2021.7.1/PeakError/MD5 | 5 ++--- PeakError-2021.7.1/PeakError/NEWS | 4 ++++ 4 files changed, 11 insertions(+), 8 deletions(-)
Title: Distributed Representations of Words
Description: Learn vector representations of words by continuous bag of words and skip-gram implementations of the 'word2vec' algorithm.
The techniques are detailed in the paper "Distributed Representations of Words and Phrases and their Compositionality" by Mikolov et al. (2013), available at <arXiv:1310.4546>.
Author: Jan Wijffels [aut, cre, cph] (R wrapper),
BNOSAC [cph] (R wrapper),
Max Fomichev [ctb, cph] (Code in src/word2vec)
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between word2vec versions 0.3.3 dated 2020-11-26 and 0.3.4 dated 2021-07-02
DESCRIPTION | 7 +++---- MD5 | 8 ++++---- NEWS.md | 5 +++++ R/word2vec.R | 33 +++++++++++++++++++++++++-------- man/word2vec_similarity.Rd | 16 +++++++++++++--- 5 files changed, 50 insertions(+), 19 deletions(-)
Title: The Ramer-Douglas-Peucker Algorithm
Description: Pretty fast implementation of the Ramer-Douglas-Peucker algorithm for reducing the number of points on a 2D curve.
Urs Ramer (1972), "An iterative procedure for the polygonal approximation of plane curves" <doi:10.1016/S0146-664X(72)80017-0>.
David H. Douglas and Thomas K. Peucker (1973), "Algorithms for the Reduction of the Number of Points Required to Represent a Digitized Line or its Caricature" <doi:10.3138/FM57-6770-U75U-7727>.
Author: Robert Dahl Jacobsen [aut, cre]
Maintainer: Robert Dahl Jacobsen <cran@dahl-jacobsen.dk>
Diff between RDP versions 0.1.4 dated 2021-06-24 and 0.1.5 dated 2021-07-02
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- src/RamerDouglasPeucker.cpp | 13 +++++++------ tests/testthat/test-RamerDouglasPeucker.R | 11 +++++++++-- 4 files changed, 24 insertions(+), 16 deletions(-)
Title: Modules to Import and Manipulate Data in 'Shiny'
Description: 'Shiny' modules to import data into an application or 'addin'
from various sources, and to manipulate them after that.
Author: Victor Perrier [aut, cre, cph],
Fanny Meyer [aut],
Zauad Shahreer Abeer [aut]
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between datamods versions 1.1.4 dated 2021-04-20 and 1.1.5 dated 2021-07-02
DESCRIPTION | 6 MD5 | 45 - NAMESPACE | 5 NEWS.md | 7 R/filter-data.R | 1112 ++++++++++++++++++++++----------------------- R/i18n.R | 121 +++- R/import-copypaste.R | 310 ++++++------ R/import-file.R | 24 R/import-globalenv.R | 10 R/import-googlesheets.R | 406 ++++++++-------- R/import-modal.R | 794 ++++++++++++++++---------------- R/update-variables.R | 12 R/utils.R | 2 build/vignette.rds |binary inst/doc/datamods.html | 421 ++++------------- inst/doc/i18n.html | 268 +--------- inst/i18n/fr.csv | 119 ++-- man/filter-data.Rd | 2 man/i18n.Rd |only man/import-copypaste.Rd | 5 man/import-file.Rd | 5 man/import-globalenv.Rd | 5 man/import-googlesheets.Rd | 5 tests/testthat/test-i18n.R | 40 + 24 files changed, 1741 insertions(+), 1983 deletions(-)
Title: Biterm Topic Models for Short Text
Description: Biterm Topic Models find topics in collections of short texts.
It is a word co-occurrence based topic model that learns topics by modeling word-word co-occurrences patterns which are called biterms.
This in contrast to traditional topic models like Latent Dirichlet Allocation and Probabilistic Latent Semantic Analysis
which are word-document co-occurrence topic models.
A biterm consists of two words co-occurring in the same short text window.
This context window can for example be a twitter message, a short answer on a survey, a sentence of a text or a document identifier.
The techniques are explained in detail in the paper 'A Biterm Topic Model For Short Text' by Xiaohui Yan, Jiafeng Guo, Yanyan Lan, Xueqi Cheng (2013) <https://github.com/xiaohuiyan/xiaohuiyan.github.io/blob/master/paper/BTM-WWW13.pdf>.
Author: Jan Wijffels [aut, cre, cph] (R wrapper),
BNOSAC [cph] (R wrapper),
Xiaohui Yan [ctb, cph] (BTM C++ library)
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between BTM versions 0.3.5 dated 2021-02-18 and 0.3.6 dated 2021-07-02
DESCRIPTION | 7 +++---- MD5 | 7 ++++--- NEWS.md | 5 +++++ README.md | 25 ++++++++++++++++++++----- tools |only 5 files changed, 32 insertions(+), 12 deletions(-)
Title: 'Acumos' R Interface
Description: Create, upload and run 'Acumos' R models.
'Acumos' (<https://www.acumos.org>) is a platform and open source framework intended to make it easy to build,
share, and deploy AI apps. 'Acumos' is part of the 'LF AI Foundation', an umbrella
organization within 'The Linux Foundation'. With this package, user can create a
component, and push it to an 'Acumos' platform.
Author: Simon Urbanek [aut],
Alassane Samba [aut, cre],
AT&T [cph],
Tech Mahindra [cph],
Orange [cph]
Maintainer: Alassane Samba <alassane.samba@orange.com>
Diff between acumos versions 0.4-1 dated 2020-10-15 and 0.4-4 dated 2021-07-02
DESCRIPTION | 8 - MD5 | 20 +-- NEWS | 67 ++++++---- R/fromSource.R | 289 +++++++++++++++++++++++----------------------- R/run.R | 43 ++++-- man/compose.Rd | 4 man/push.Rd | 13 +- man/pushFromSource.Rd | 9 + man/run.Rd | 2 tests/testthat.R | 8 - tests/testthat/test-api.R | 164 +++++++++++++------------- 11 files changed, 340 insertions(+), 287 deletions(-)
Title: Statistics Norway's Miscellaneous Tools
Description: Functions used by other packages from Statistics Norway are gathered. General data manipulation functions, and functions for hierarchical computations are included (Langsrud, 2020) <doi:10.13140/RG.2.2.27313.61283>. The hierarchy specification functions are useful within statistical disclosure control.
Author: Øyvind Langsrud [aut, cre],
Daniel Lupp [aut],
Bjørn-Helge Mevik [cph]
Maintainer: Øyvind Langsrud <oyl@ssb.no>
Diff between SSBtools versions 1.1.0 dated 2021-04-23 and 1.2.0 dated 2021-07-02
DESCRIPTION | 10 LICENSE | 382 +++++++++++++++---------------- MD5 | 37 +-- NAMESPACE | 10 R/Div.R | 96 +++++++ R/Extend0.R |only R/FindDisclosiveCells.R |only R/GaussIndependent.R |only R/HierarchyCompute.R | 45 +++ R/LSfitNonNeg.R |only R/Mipf.R |only R/SSBtoolsData.R | 14 + man/DummyDuplicated.Rd |only man/DummyHierarchy.Rd | 167 +++++++------ man/Extend0.Rd |only man/FindDisclosiveCells.Rd |only man/FormulaSums.Rd | 156 ++++++------ man/GaussIndependent.Rd |only man/Hierarchies2ModelMatrix.Rd | 250 ++++++++++---------- man/HierarchiesAndFormula2ModelMatrix.Rd | 226 +++++++++--------- man/LSfitNonNeg.Rd |only man/Mipf.Rd |only man/ModelMatrix.Rd | 186 +++++++-------- man/SSBtoolsData.Rd | 86 +++--- man/sosialFiktiv.Rd | 42 +-- 25 files changed, 951 insertions(+), 756 deletions(-)
Title: Comprehensive, User-Friendly Toolkit for Probing Interactions
Description: A suite of functions for conducting and interpreting analysis
of statistical interaction in regression models that was formerly part of the
'jtools' package. Functionality includes visualization of two- and three-way
interactions among continuous and/or categorical variables as well as
calculation of "simple slopes" and Johnson-Neyman intervals (see e.g.,
Bauer & Curran, 2005 <doi:10.1207/s15327906mbr4003_5>). These
capabilities are implemented for generalized linear models in addition to the
standard linear regression context.
Author: Jacob A. Long [aut, cre] (<https://orcid.org/0000-0002-1582-6214>)
Maintainer: Jacob A. Long <jacob.long@sc.edu>
Diff between interactions versions 1.1.3 dated 2020-04-04 and 1.1.5 dated 2021-07-02
interactions-1.1.3/interactions/tests/figs |only interactions-1.1.5/interactions/DESCRIPTION | 13 interactions-1.1.5/interactions/MD5 | 184 interactions-1.1.5/interactions/NAMESPACE | 22 interactions-1.1.5/interactions/NEWS.md | 330 interactions-1.1.5/interactions/R/interact_plot.R | 1460 +- interactions-1.1.5/interactions/R/johnson_neyman.R | 1250 +- interactions-1.1.5/interactions/R/simple_margins.R | 1014 - interactions-1.1.5/interactions/R/simple_slopes.R | 2238 +-- interactions-1.1.5/interactions/README.md | 330 interactions-1.1.5/interactions/build/partial.rdb |only interactions-1.1.5/interactions/build/vignette.rds |binary interactions-1.1.5/interactions/inst/doc/categorical.R | 109 interactions-1.1.5/interactions/inst/doc/categorical.Rmd | 285 interactions-1.1.5/interactions/inst/doc/categorical.html | 2489 ---- interactions-1.1.5/interactions/inst/doc/interactions.R | 391 interactions-1.1.5/interactions/inst/doc/interactions.Rmd | 1411 +- interactions-1.1.5/interactions/inst/doc/interactions.html | 5606 +++------- interactions-1.1.5/interactions/man/cat_plot.Rd | 2 interactions-1.1.5/interactions/man/interact_plot.Rd | 4 interactions-1.1.5/interactions/man/johnson_neyman.Rd | 6 interactions-1.1.5/interactions/man/plot.sim_margins.Rd | 2 interactions-1.1.5/interactions/man/plot.sim_slopes.Rd | 2 interactions-1.1.5/interactions/man/reexports.Rd | 32 interactions-1.1.5/interactions/man/sim_margins.Rd | 4 interactions-1.1.5/interactions/man/sim_margins_tidiers.Rd | 2 interactions-1.1.5/interactions/man/sim_slopes.Rd | 2 interactions-1.1.5/interactions/man/sim_slopes_tidiers.Rd | 2 interactions-1.1.5/interactions/tests/testthat/_snaps |only interactions-1.1.5/interactions/tests/testthat/test_cat_plot.R | 551 interactions-1.1.5/interactions/tests/testthat/test_interact_plot.R | 498 interactions-1.1.5/interactions/vignettes/categorical.Rmd | 285 interactions-1.1.5/interactions/vignettes/interactions.Rmd | 1411 +- 33 files changed, 8489 insertions(+), 11446 deletions(-)
Title: Probabilistic Verbal Autopsy Coding with 'InSilicoVA' Algorithm
Description: Computes individual causes of death and population cause-specific mortality fractions using the 'InSilicoVA' algorithm from McCormick et al. (2016) <DOI:10.1080/01621459.2016.1152191>. It uses data derived from verbal autopsy (VA) interviews, in a format similar to the input of the widely used 'InterVA4' method. This package provides general model fitting and customization for 'InSilicoVA' algorithm and basic graphical visualization of the output.
Author: Zehang Richard Li, Tyler McCormick, Sam Clark
Maintainer: Zehang Richard Li <lizehang@gmail.com>
Diff between InSilicoVA versions 1.3.2 dated 2021-05-26 and 1.3.3 dated 2021-07-02
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/insilico_core.r | 40 ++++++++++++++++++++++++++++++++++++---- R/insilico_standard.r | 6 ++++-- man/insilico.Rd | 5 ++++- 6 files changed, 57 insertions(+), 16 deletions(-)
Title: Atlas of Living Australia (ALA) Data and Resources in R
Description: The Atlas of Living Australia ('ALA') provides tools to enable users
of biodiversity information to find, access, combine and visualise data on
Australian plants and animals; these have been made available from
<https://ala.org.au/>. 'galah' provides a subset of the tools to be
directly used within R. It enables the R community to directly access data
and resources hosted by the 'ALA'.
Author: Matilda Stevenson [aut, cre],
Martin Westgate [aut],
Peggy Newman [aut],
Dax Kellie [ctb]
Maintainer: Matilda Stevenson <matilda.stevenson@csiro.au>
Diff between galah versions 1.1.0 dated 2021-05-05 and 1.2.0 dated 2021-07-02
DESCRIPTION | 15 +- MD5 | 103 +++++++++++--------- NAMESPACE | 3 NEWS.md | 31 ++++++ R/ala_GET.R | 7 - R/ala_citation.R | 12 +- R/ala_config.R | 22 ++-- R/ala_counts.R | 49 +++------ R/ala_download.R | 16 ++- R/ala_media.R | 43 +++----- R/ala_occurrences.R | 123 +++++++++++------------- R/ala_species.R | 22 +--- R/find_atlases.R |only R/find_field_values.R | 10 - R/find_profiles.R | 28 +++-- R/galah.R | 143 ++++++++++++++-------------- R/onload.R | 21 ---- R/search_fields.R | 39 +------ R/select_columns.R | 11 -- R/select_filters.R | 66 +------------ R/select_taxa.R | 102 +++++++++++++------- R/utilities_internal.R | 85 +++++++++++++++- README.md | 36 +++++++ build/vignette.rds |binary inst/doc/galah.html | 156 ++++++++++++++++--------------- inst/doc/international_atlases.R |only inst/doc/international_atlases.Rmd |only inst/doc/international_atlases.html |only man/ala_config.Rd | 3 man/ala_counts.Rd | 9 + man/ala_media.Rd | 8 + man/ala_occurrences.Rd | 9 + man/ala_species.Rd | 2 man/figures/logo.png |binary man/find_atlases.Rd |only man/find_field_values.Rd | 4 man/find_reasons.Rd | 6 - man/galah.Rd | 125 +++++++++++++----------- man/select_columns.Rd | 4 man/select_taxa.Rd | 6 - tests/testthat.R | 2 tests/testthat/test-ala_citation.R | 12 ++ tests/testthat/test-ala_config.R | 6 - tests/testthat/test-ala_counts.R | 57 +++++++++-- tests/testthat/test-ala_media.R | 1 tests/testthat/test-ala_occurrences.R | 52 +++++++--- tests/testthat/test-ala_species.R | 18 +++ tests/testthat/test-find_field_values.R | 9 + tests/testthat/test-find_profiles.R | 3 tests/testthat/test-international.R |only tests/testthat/test-search_fields.R | 2 tests/testthat/test-select_filters.R | 11 -- tests/testthat/test-select_locations.R | 10 + tests/testthat/test-select_taxa.R | 21 +++- tests/testthat/test-utilities_internal.R |only vignettes/bombina_variegata.csv |only vignettes/international_atlases.Rmd |only 57 files changed, 897 insertions(+), 626 deletions(-)
Title: Bayesian Structural Time Series
Description: Time series regression using dynamic linear models fit using
MCMC. See Scott and Varian (2014) <DOI:10.1504/IJMMNO.2014.059942>, among many
other sources.
Author: Steven L. Scott <steve.the.bayesian@gmail.com>
Maintainer: Steven L. Scott <steve.the.bayesian@gmail.com>
Diff between bsts versions 0.9.6 dated 2021-04-07 and 0.9.7 dated 2021-07-02
bsts-0.9.6/bsts/R/update.bsts.R |only bsts-0.9.6/bsts/inst/tests/tests |only bsts-0.9.6/bsts/man/mbsts.Rd |only bsts-0.9.6/bsts/man/plot.mbsts.Rd |only bsts-0.9.6/bsts/man/plot.mbsts.prediction.Rd |only bsts-0.9.6/bsts/tests |only bsts-0.9.7/bsts/DESCRIPTION | 8 - bsts-0.9.7/bsts/MD5 | 50 +---------- bsts-0.9.7/bsts/NAMESPACE | 8 - bsts-0.9.7/bsts/inst/tests/testthat/test-dirm.R | 8 - bsts-0.9.7/bsts/inst/tests/testthat/test-multivariate.R | 35 +++---- bsts-0.9.7/bsts/inst/tests/testthat/test-prediction-errors.R | 2 bsts-0.9.7/bsts/inst/tests/testthat/test-regressionholiday.R | 4 13 files changed, 37 insertions(+), 78 deletions(-)