Title: Infrastructure for Manipulation Polynomial Matrices
Description: Implementation of class "polyMatrix" for storing a matrix of polynomials and implements
basic matrix operations; including a determinant and characteristic polynomial.
It is based on the package 'polynom' and uses a lot of its methods to implement matrix operations.
This package includes 3 methods of triangularization of polynomial matrices:
Extended Euclidean algorithm which is most classical but numerically unstable;
Sylvester algorithm based on LQ decomposition;
Interpolation algorithm is based on LQ decomposition and Newton interpolation.
Both methods are described in
D. Henrion & M. Sebek, Reliable numerical methods for polynomial matrix triangularization,
IEEE Transactions on Automatic Control (Volume 44, Issue 3, Mar 1999, Pages 497-508) <doi:10.1109/9.751344>
and in
Salah Labhalla, Henri Lombardi & Roger Marlin,
Algorithmes de calcule de la reduction de Hermite d'une matrice a coefficients polynomeaux,
Theoretical Computer Science (Volume 161, Issue 1-2, July 1996, Pages 69-92) <doi:10.1016/0304-3975(95)00090-9>.
Author: Tamas Prohle [aut],
Peter Prohle [aut],
Nikolai Ryzhkov [aut, cre],
Ildiko Laszlo [aut] (<https://orcid.org/0000-0003-2324-8183>),
Ulas Onat Alakent [ctb]
Maintainer: Nikolai Ryzhkov <namezys@gmail.com>
Diff between polyMatrix versions 0.3.1 dated 2020-06-04 and 0.9.11 dated 2021-07-11
polyMatrix-0.3.1/polyMatrix/R/CanForm.R |only polyMatrix-0.3.1/polyMatrix/R/Ops.R |only polyMatrix-0.3.1/polyMatrix/R/Utilities.R |only polyMatrix-0.3.1/polyMatrix/R/charpn.R |only polyMatrix-0.3.1/polyMatrix/R/check.R |only polyMatrix-0.3.1/polyMatrix/R/coefs.R |only polyMatrix-0.3.1/polyMatrix/R/const.R |only polyMatrix-0.3.1/polyMatrix/R/constConv.R |only polyMatrix-0.3.1/polyMatrix/R/degree.R |only polyMatrix-0.3.1/polyMatrix/R/diag.R |only polyMatrix-0.3.1/polyMatrix/R/dim.R |only polyMatrix-0.3.1/polyMatrix/R/is.zero.R |only polyMatrix-0.3.1/polyMatrix/R/lead.R |only polyMatrix-0.3.1/polyMatrix/R/pMadj.R |only polyMatrix-0.3.1/polyMatrix/R/pMconvert.R |only polyMatrix-0.3.1/polyMatrix/R/pMdet.R |only polyMatrix-0.3.1/polyMatrix/R/pMgen.R |only polyMatrix-0.3.1/polyMatrix/R/pMkmm.R |only polyMatrix-0.3.1/polyMatrix/R/pMstr.R |only polyMatrix-0.3.1/polyMatrix/R/polyMul.R |only polyMatrix-0.3.1/polyMatrix/R/predict.R |only polyMatrix-0.3.1/polyMatrix/R/print.R |only polyMatrix-0.3.1/polyMatrix/R/proper.R |only polyMatrix-0.3.1/polyMatrix/R/rebuild_degree.R |only polyMatrix-0.3.1/polyMatrix/R/round.R |only polyMatrix-0.3.1/polyMatrix/R/set.R |only polyMatrix-0.3.1/polyMatrix/R/symb.R |only polyMatrix-0.3.1/polyMatrix/R/test.R |only polyMatrix-0.3.1/polyMatrix/R/trace.R |only polyMatrix-0.3.1/polyMatrix/R/trans.R |only polyMatrix-0.3.1/polyMatrix/R/triang_euclidean.R |only polyMatrix-0.3.1/polyMatrix/R/zero_round.R |only polyMatrix-0.3.1/polyMatrix/build |only polyMatrix-0.3.1/polyMatrix/man/CanForm.Rd |only polyMatrix-0.3.1/polyMatrix/man/GcdLcm.Rd |only polyMatrix-0.3.1/polyMatrix/man/MTS2pM.Rd |only polyMatrix-0.3.1/polyMatrix/man/Ops.pMabcd.Rd |only polyMatrix-0.3.1/polyMatrix/man/Ops.pMatrix.Rd |only polyMatrix-0.3.1/polyMatrix/man/ch2pn.Rd |only polyMatrix-0.3.1/polyMatrix/man/charpn.Rd |only polyMatrix-0.3.1/polyMatrix/man/coefs.Rd |only polyMatrix-0.3.1/polyMatrix/man/coefs.pMatrix.Rd |only polyMatrix-0.3.1/polyMatrix/man/const.Rd |only polyMatrix-0.3.1/polyMatrix/man/const.pMatrix.Rd |only polyMatrix-0.3.1/polyMatrix/man/constConv.Rd |only polyMatrix-0.3.1/polyMatrix/man/cycFill.Rd |only polyMatrix-0.3.1/polyMatrix/man/degree.pMatrix.Rd |only polyMatrix-0.3.1/polyMatrix/man/diag.pMatrix.Rd |only polyMatrix-0.3.1/polyMatrix/man/dim.polyMatrix.Rd |only polyMatrix-0.3.1/polyMatrix/man/is.pMatrix.Rd |only polyMatrix-0.3.1/polyMatrix/man/lead.Rd |only polyMatrix-0.3.1/polyMatrix/man/lead.pMatrix.Rd |only polyMatrix-0.3.1/polyMatrix/man/matrixMinMax.Rd |only polyMatrix-0.3.1/polyMatrix/man/pMadj.Rd |only polyMatrix-0.3.1/polyMatrix/man/pMatrix-package.Rd |only polyMatrix-0.3.1/polyMatrix/man/pMbas.Rd |only polyMatrix-0.3.1/polyMatrix/man/pMcol.Rd |only polyMatrix-0.3.1/polyMatrix/man/pMdet.Rd |only polyMatrix-0.3.1/polyMatrix/man/pMdiag.Rd |only polyMatrix-0.3.1/polyMatrix/man/pMgen.Rd |only polyMatrix-0.3.1/polyMatrix/man/pMgen.a.Rd |only polyMatrix-0.3.1/polyMatrix/man/pMkmm.Rd |only polyMatrix-0.3.1/polyMatrix/man/pMmult.Rd |only polyMatrix-0.3.1/polyMatrix/man/pMprod.Rd |only polyMatrix-0.3.1/polyMatrix/man/pMrow.Rd |only polyMatrix-0.3.1/polyMatrix/man/pMsgn.Rd |only polyMatrix-0.3.1/polyMatrix/man/pMstr.Rd |only polyMatrix-0.3.1/polyMatrix/man/pMsub.Rd |only polyMatrix-0.3.1/polyMatrix/man/pVsk.Rd |only polyMatrix-0.3.1/polyMatrix/man/permNext.Rd |only polyMatrix-0.3.1/polyMatrix/man/permSign.Rd |only polyMatrix-0.3.1/polyMatrix/man/pn2ch.Rd |only polyMatrix-0.3.1/polyMatrix/man/polyMconvert.Rd |only polyMatrix-0.3.1/polyMatrix/man/polyMul.Rd |only polyMatrix-0.3.1/polyMatrix/man/pprt.Rd |only polyMatrix-0.3.1/polyMatrix/man/predict.charpn.Rd |only polyMatrix-0.3.1/polyMatrix/man/predict.pMatrix.Rd |only polyMatrix-0.3.1/polyMatrix/man/predict.polynomial.Rd |only polyMatrix-0.3.1/polyMatrix/man/print.Rd |only polyMatrix-0.3.1/polyMatrix/man/proper.Rd |only polyMatrix-0.3.1/polyMatrix/man/set.Rd |only polyMatrix-0.3.1/polyMatrix/man/set.pMatrix.Rd |only polyMatrix-0.3.1/polyMatrix/man/ssetNext.Rd |only polyMatrix-0.3.1/polyMatrix/man/symb.Rd |only polyMatrix-0.3.1/polyMatrix/man/t.polyMatrix.Rd |only polyMatrix-0.3.1/polyMatrix/man/tr.pMatrix.Rd |only polyMatrix-0.3.1/polyMatrix/man/triang_Euclidean.Rd |only polyMatrix-0.3.1/polyMatrix/man/triang_sylvester.Rd |only polyMatrix-0.3.1/polyMatrix/tests/testthat/test_coefs.R |only polyMatrix-0.3.1/polyMatrix/tests/testthat/test_degree.R |only polyMatrix-0.3.1/polyMatrix/tests/testthat/test_is.zero.R |only polyMatrix-0.3.1/polyMatrix/tests/testthat/test_ops.R |only polyMatrix-0.3.1/polyMatrix/tests/testthat/test_pMadj.R |only polyMatrix-0.3.1/polyMatrix/tests/testthat/test_pMbas.R |only polyMatrix-0.3.1/polyMatrix/tests/testthat/test_pMcol.R |only polyMatrix-0.3.1/polyMatrix/tests/testthat/test_pMdiag.R |only polyMatrix-0.3.1/polyMatrix/tests/testthat/test_pMgen.R |only polyMatrix-0.3.1/polyMatrix/tests/testthat/test_pMprod.R |only polyMatrix-0.3.1/polyMatrix/tests/testthat/test_pMrow.R |only polyMatrix-0.3.1/polyMatrix/tests/testthat/test_pMsgn.R |only polyMatrix-0.3.1/polyMatrix/tests/testthat/test_pMsub.R |only polyMatrix-0.3.1/polyMatrix/tests/testthat/test_pVsk.R |only polyMatrix-0.3.1/polyMatrix/tests/testthat/test_permNext.R |only polyMatrix-0.3.1/polyMatrix/tests/testthat/test_permSign.R |only polyMatrix-0.3.1/polyMatrix/tests/testthat/test_round.R |only polyMatrix-0.3.1/polyMatrix/tests/testthat/test_ssetNext.R |only polyMatrix-0.3.1/polyMatrix/tests/testthat/test_t.polyMatrix.R |only polyMatrix-0.3.1/polyMatrix/tests/testthat/test_trace.R |only polyMatrix-0.3.1/polyMatrix/tests/testthat/test_triang_euclidean.R |only polyMatrix-0.3.1/polyMatrix/tests/testthat/test_triang_sylvester.R |only polyMatrix-0.3.1/polyMatrix/tests/testthat/test_utilities_cyc_fill.R |only polyMatrix-0.3.1/polyMatrix/tests/testthat/test_utilities_pmdiag.R |only polyMatrix-0.3.1/polyMatrix/tests/testthat/test_utilities_rowMax_and_colMax.R |only polyMatrix-0.3.1/polyMatrix/tests/testthat/test_utilities_rowMin_and_colMin.R |only polyMatrix-0.3.1/polyMatrix/tests/testthat/test_utils.R |only polyMatrix-0.9.11/polyMatrix/DESCRIPTION | 14 polyMatrix-0.9.11/polyMatrix/MD5 | 215 ++++------ polyMatrix-0.9.11/polyMatrix/NAMESPACE | 152 ++----- polyMatrix-0.9.11/polyMatrix/R/class_polyMatrix.R |only polyMatrix-0.9.11/polyMatrix/R/class_polyMatrixCharPolynomial.R |only polyMatrix-0.9.11/polyMatrix/R/constants.R | 20 polyMatrix-0.9.11/polyMatrix/R/method_adjoint.R |only polyMatrix-0.9.11/polyMatrix/R/method_bind.R |only polyMatrix-0.9.11/polyMatrix/R/method_charpolynom.R |only polyMatrix-0.9.11/polyMatrix/R/method_coef.R |only polyMatrix-0.9.11/polyMatrix/R/method_degree.R |only polyMatrix-0.9.11/polyMatrix/R/method_det.R |only polyMatrix-0.9.11/polyMatrix/R/method_diag.R |only polyMatrix-0.9.11/polyMatrix/R/method_dim.R |only polyMatrix-0.9.11/polyMatrix/R/method_gcd.R |only polyMatrix-0.9.11/polyMatrix/R/method_inv.R |only polyMatrix-0.9.11/polyMatrix/R/method_is_zero.R |only polyMatrix-0.9.11/polyMatrix/R/method_lcm.R |only polyMatrix-0.9.11/polyMatrix/R/method_predict.R |only polyMatrix-0.9.11/polyMatrix/R/method_proper.R |only polyMatrix-0.9.11/polyMatrix/R/method_round.R |only polyMatrix-0.9.11/polyMatrix/R/method_show.R |only polyMatrix-0.9.11/polyMatrix/R/method_subscript.R |only polyMatrix-0.9.11/polyMatrix/R/method_t.R |only polyMatrix-0.9.11/polyMatrix/R/method_trace.R |only polyMatrix-0.9.11/polyMatrix/R/method_zero_round.R |only polyMatrix-0.9.11/polyMatrix/R/ops_addition.R |only polyMatrix-0.9.11/polyMatrix/R/ops_equal.R |only polyMatrix-0.9.11/polyMatrix/R/ops_matrix_mult.R |only polyMatrix-0.9.11/polyMatrix/R/ops_multiplication.R |only polyMatrix-0.9.11/polyMatrix/R/ops_substraction.R |only polyMatrix-0.9.11/polyMatrix/R/parser.R |only polyMatrix-0.9.11/polyMatrix/R/triang_interpolation.R | 33 - polyMatrix-0.9.11/polyMatrix/R/triang_sylvester.R | 114 ++--- polyMatrix-0.9.11/polyMatrix/R/utils.R |only polyMatrix-0.9.11/polyMatrix/README.md | 6 polyMatrix-0.9.11/polyMatrix/man/GCD.Rd |only polyMatrix-0.9.11/polyMatrix/man/LCM.Rd |only polyMatrix-0.9.11/polyMatrix/man/adjoint.Rd |only polyMatrix-0.9.11/polyMatrix/man/cbind.Rd |only polyMatrix-0.9.11/polyMatrix/man/charpolynom.Rd |only polyMatrix-0.9.11/polyMatrix/man/cofactor.Rd |only polyMatrix-0.9.11/polyMatrix/man/degree.Rd | 133 +++--- polyMatrix-0.9.11/polyMatrix/man/diag.Rd | 199 +++------ polyMatrix-0.9.11/polyMatrix/man/inv.Rd |only polyMatrix-0.9.11/polyMatrix/man/is.polyMatrix.Rd |only polyMatrix-0.9.11/polyMatrix/man/is.proper.Rd |only polyMatrix-0.9.11/polyMatrix/man/is.zero.Rd |only polyMatrix-0.9.11/polyMatrix/man/matrix.degree.Rd |only polyMatrix-0.9.11/polyMatrix/man/minor.Rd |only polyMatrix-0.9.11/polyMatrix/man/newton.Rd |only polyMatrix-0.9.11/polyMatrix/man/parse.polyMatrix.Rd |only polyMatrix-0.9.11/polyMatrix/man/parse.polynomial.Rd |only polyMatrix-0.9.11/polyMatrix/man/polyMatrix-class.Rd |only polyMatrix-0.9.11/polyMatrix/man/polyMatrix.Rd |only polyMatrix-0.9.11/polyMatrix/man/polyMatrix.apply.Rd |only polyMatrix-0.9.11/polyMatrix/man/polyMatrixCharPolynomial-class.Rd |only polyMatrix-0.9.11/polyMatrix/man/t-polyMatrix-method.Rd |only polyMatrix-0.9.11/polyMatrix/man/tr.Rd | 105 +--- polyMatrix-0.9.11/polyMatrix/man/triang_Interpolation.Rd | 13 polyMatrix-0.9.11/polyMatrix/man/triang_Sylvester.Rd |only polyMatrix-0.9.11/polyMatrix/man/zero.round.Rd |only polyMatrix-0.9.11/polyMatrix/man/zero_lead_hyp_rows.Rd |only polyMatrix-0.9.11/polyMatrix/man/zero_lead_rows.Rd |only polyMatrix-0.9.11/polyMatrix/tests/testthat/setup.R |only polyMatrix-0.9.11/polyMatrix/tests/testthat/test_class_polyMatrix.R |only polyMatrix-0.9.11/polyMatrix/tests/testthat/test_method_adjoint.R |only polyMatrix-0.9.11/polyMatrix/tests/testthat/test_method_bind.R |only polyMatrix-0.9.11/polyMatrix/tests/testthat/test_method_char_polynomial.R |only polyMatrix-0.9.11/polyMatrix/tests/testthat/test_method_coef.R |only polyMatrix-0.9.11/polyMatrix/tests/testthat/test_method_degree.R |only polyMatrix-0.9.11/polyMatrix/tests/testthat/test_method_det.R |only polyMatrix-0.9.11/polyMatrix/tests/testthat/test_method_diag.R |only polyMatrix-0.9.11/polyMatrix/tests/testthat/test_method_dim.R |only polyMatrix-0.9.11/polyMatrix/tests/testthat/test_method_gcd.R |only polyMatrix-0.9.11/polyMatrix/tests/testthat/test_method_is_zero.R |only polyMatrix-0.9.11/polyMatrix/tests/testthat/test_method_lcm.R |only polyMatrix-0.9.11/polyMatrix/tests/testthat/test_method_predict.R |only polyMatrix-0.9.11/polyMatrix/tests/testthat/test_method_proper.R |only polyMatrix-0.9.11/polyMatrix/tests/testthat/test_method_round.R |only polyMatrix-0.9.11/polyMatrix/tests/testthat/test_method_subscript.R |only polyMatrix-0.9.11/polyMatrix/tests/testthat/test_method_t.R |only polyMatrix-0.9.11/polyMatrix/tests/testthat/test_method_trace.R |only polyMatrix-0.9.11/polyMatrix/tests/testthat/test_ops_addition.R |only polyMatrix-0.9.11/polyMatrix/tests/testthat/test_ops_equal.R |only polyMatrix-0.9.11/polyMatrix/tests/testthat/test_ops_matrix_mult.R |only polyMatrix-0.9.11/polyMatrix/tests/testthat/test_ops_multiplication.R |only polyMatrix-0.9.11/polyMatrix/tests/testthat/test_ops_subscruction.R |only polyMatrix-0.9.11/polyMatrix/tests/testthat/test_parser.R |only polyMatrix-0.9.11/polyMatrix/tests/testthat/test_zero_round.R | 89 +--- 205 files changed, 466 insertions(+), 627 deletions(-)
Title: Phonetic Spelling Algorithms
Description: Provides a collection of phonetic algorithms including
Soundex, Metaphone, NYSIIS, Caverphone, and others. The package is
documented in <doi:10.18637/jss.v095.i08>.
Author: James Howard [aut, cre] (<https://orcid.org/0000-0003-4530-1547>),
Kyle Haynes [ctb],
Amanda Hood [ctb],
Os Keyes [ctb]
Maintainer: James Howard <jh@jameshoward.us>
Diff between phonics versions 1.3.9 dated 2020-10-12 and 1.3.10 dated 2021-07-11
DESCRIPTION | 9 ++++----- MD5 | 10 +++++----- README.md | 4 ++-- build/vignette.rds |binary inst/doc/phonics.html | 23 ++++++++++++++++++++--- src/RcppExports.cpp | 5 +++++ 6 files changed, 36 insertions(+), 15 deletions(-)
Title: Bayesian Latent Variable Analysis
Description: Fit a variety of Bayesian latent variable models, including confirmatory
factor analysis, structural equation models, and latent growth curve models.
Author: Edgar Merkle [aut, cre] (<https://orcid.org/0000-0001-7158-0653>),
Yves Rosseel [aut],
Ben Goodrich [aut],
Mauricio Garnier-Villarreal [ctb]
(<https://orcid.org/0000-0002-2951-6647>, R/blav_compare.R,
R/ctr_bayes_fit.R),
Terrence D. Jorgensen [ctb] (<https://orcid.org/0000-0001-5111-6773>,
R/ctr_bayes_fit.R, R/ctr_ppmc.R),
Huub Hoofs [ctb] (R/ctr_bayes_fit.R),
Rens van de Schoot [ctb] (R/ctr_bayes_fit.R)
Maintainer: Edgar Merkle <merklee@missouri.edu>
Diff between blavaan versions 0.3-15 dated 2021-02-19 and 0.3-16 dated 2021-07-11
blavaan-0.3-15/blavaan/NEWS |only blavaan-0.3-15/blavaan/tests/testthat |only blavaan-0.3-15/blavaan/tests/testthat.R |only blavaan-0.3-16/blavaan/DESCRIPTION | 12 blavaan-0.3-16/blavaan/MD5 | 53 - blavaan-0.3-16/blavaan/NAMESPACE | 8 blavaan-0.3-16/blavaan/NEWS.md |only blavaan-0.3-16/blavaan/R/blav_compare.R | 37 - blavaan-0.3-16/blavaan/R/blav_fit_measures.R | 41 - blavaan-0.3-16/blavaan/R/blav_object_methods.R | 9 blavaan-0.3-16/blavaan/R/blav_predict.R | 44 - blavaan-0.3-16/blavaan/R/blav_test.R | 3 blavaan-0.3-16/blavaan/R/blav_utils.R | 36 + blavaan-0.3-16/blavaan/R/blavaan.R | 92 +-- blavaan-0.3-16/blavaan/R/ctr_bayes_fit.R | 15 blavaan-0.3-16/blavaan/R/ctr_ppmc.R | 15 blavaan-0.3-16/blavaan/R/dpriors.R | 4 blavaan-0.3-16/blavaan/R/lav_export_stanmarg.R | 122 +++- blavaan-0.3-16/blavaan/R/lvgqs.R | 3 blavaan-0.3-16/blavaan/R/postpred.R | 18 blavaan-0.3-16/blavaan/R/stanmarg_data.R | 33 - blavaan-0.3-16/blavaan/README.md | 6 blavaan-0.3-16/blavaan/inst/testdata/sysdata.rda |binary blavaan-0.3-16/blavaan/inst/tinytest |only blavaan-0.3-16/blavaan/man/blavFitIndices.Rd | 25 blavaan-0.3-16/blavaan/man/blavPredict.Rd |only blavaan-0.3-16/blavaan/man/blavaan-class.Rd | 2 blavaan-0.3-16/blavaan/man/ppmc.Rd | 11 blavaan-0.3-16/blavaan/src/stan_files/stanmarg.stan | 562 ++++++-------------- blavaan-0.3-16/blavaan/tests/tinytest.R |only 30 files changed, 588 insertions(+), 563 deletions(-)
Title: Keyboard Shortcuts for 'shiny'
Description: Assign and listen to keyboard shortcuts in 'shiny' using the
'Mousetrap' Javascript library.
Author: Tyler Littlefield [aut, cre] (Author of Javascript wrapper),
Colin Fay [aut] (<https://orcid.org/0000-0001-7343-1846>),
Craig Campbell [cph] (Author of JavaScript code)
Maintainer: Tyler Littlefield <tylerlittlefield@hey.com>
Diff between keys versions 0.1.0 dated 2020-10-19 and 0.1.1 dated 2021-07-11
DESCRIPTION | 7 MD5 | 25 - NEWS.md | 4 R/html_dependency.R | 3 R/keys.R | 6 R/utils.R | 8 README.md | 146 ++++----- build/vignette.rds |binary inst/doc/navigation.html | 437 +++++----------------------- inst/mousetrap/mousetrap-global-bind.min.js |only man/keysInput.Rd | 5 man/pauseKeys.Rd | 2 man/recordKeys.Rd | 2 man/updateKeys.Rd | 2 14 files changed, 204 insertions(+), 443 deletions(-)
Title: Statistics Tutorials for Biologists
Description: Tutorials for statistics, aimed at biological scientists.
Subjects range from basic descriptive statistics
through to complex linear modelling. The tutorials
include text, videos, interactive coding exercises
and multiple choice quizzes. The package also
includes 19 datasets which are used in the
tutorials.
Author: Rob Knell
Maintainer: Rob Knell <r.knell@qmul.ac.uk>
Diff between Biostatistics versions 1.0.1 dated 2021-02-13 and 1.0.2 dated 2021-07-11
Biostatistics-1.0.1/Biostatistics/inst/tutorials/18_Factors_&_continuous_variables |only Biostatistics-1.0.2/Biostatistics/DESCRIPTION | 6 - Biostatistics-1.0.2/Biostatistics/MD5 | 32 +++++----- Biostatistics-1.0.2/Biostatistics/NEWS.md | 2 Biostatistics-1.0.2/Biostatistics/build/vignette.rds |binary Biostatistics-1.0.2/Biostatistics/inst/tutorials/03_Boxplots/Boxplots.Rmd | 2 Biostatistics-1.0.2/Biostatistics/inst/tutorials/04_Scatterplots/Scatterplots.Rmd | 2 Biostatistics-1.0.2/Biostatistics/inst/tutorials/09_Paired_sample_t_tests/images/Ophiocordyceps.png |binary Biostatistics-1.0.2/Biostatistics/inst/tutorials/11_Chi_square_tests/images/E_lori.png |binary Biostatistics-1.0.2/Biostatistics/inst/tutorials/11_Chi_square_tests/images/Elacatinus_lori_(Linesnout_Goby).jpg |binary Biostatistics-1.0.2/Biostatistics/inst/tutorials/12_Correlation/Basic_Analysis_4_Correlation.Rmd | 4 - Biostatistics-1.0.2/Biostatistics/inst/tutorials/13_Single_factor_ANOVA/images/ragwort.jpeg |binary Biostatistics-1.0.2/Biostatistics/inst/tutorials/17_Multiple_regression/images/house_finches.jpg |binary Biostatistics-1.0.2/Biostatistics/inst/tutorials/18_Factors_and_continuous_variables |only 14 files changed, 25 insertions(+), 23 deletions(-)
Title: BMRB Data Access and Visualization
Description: The Biological Magnetic Resonance Data Bank (BMRB,<http://
www.bmrb.io/>) collects, annotates, archives, and disseminates (worldwide
in the public domain) the important spectral and quantitative data derived
from NMR(Nuclear Magnetic Resonance) spectroscopic investigations of biological
macromolecules and metabolites. This package provides an interface to BMRB
database for easy data access and includes a minimal set of data visualization
functions. Users are encouraged to make their own data visualizations using BMRB
data.
Author: Kumaran Baskaran
Maintainer: Kumaran Baskaran<baskaran.kumaran@gmail.com>
Diff between RBMRB versions 2.1.4 dated 2020-10-26 and 2.1.7 dated 2021-07-11
DESCRIPTION | 9 ++++----- MD5 | 4 ++-- R/RBMRB.R | 8 ++++---- 3 files changed, 10 insertions(+), 11 deletions(-)
Title: Summarize CRAN Check Results in the Terminal
Description: The CRAN check results and where your package stands in the
CRAN submission queue in your R terminal.
Author: Francois Michonneau [aut, cre],
Ben Bolker [ctb]
Maintainer: Francois Michonneau <francois.michonneau@gmail.com>
Diff between foghorn versions 1.4.1 dated 2021-05-31 and 1.4.2 dated 2021-07-11
DESCRIPTION | 6 MD5 | 14 - NEWS.md | 9 + R/cran_queue.R | 17 -- R/winbuilder_queue.R | 2 inst/doc/foghorn.html | 293 ++++++----------------------------------- man/cran_incoming.Rd | 4 tests/testthat/test-incoming.R | 5 8 files changed, 84 insertions(+), 266 deletions(-)
Title: Plot Heatmap
Description: The flexibility and excellence of 'ggplot2' is unquestionable,
so many drawing tools basically need 'ggplot2' as the operating object.
In order to develop a heatmap drawing system based on ggplot2, we developed
this tool, mainly to solve the heatmap puzzle problem and the flexible
connection between the heatmap and the 'ggplot2' object.
The advantages of this tool are as follows:
1. More flexible label settings;
2. Realize the linkage of heatmap and 'ggplot2' drawing system,
which is helpful for operations such as puzzles;
3. Simple and easy to operate;
4. Optimization of clustering tree visualization.
Author: Baiwei Luo [aut, cre]
Maintainer: Baiwei Luo <2734782653@qq.com>
Diff between ggheatmap versions 1.0 dated 2021-05-26 and 1.1 dated 2021-07-11
ggheatmap-1.0/ggheatmap/tests |only ggheatmap-1.1/ggheatmap/DESCRIPTION | 8 ggheatmap-1.1/ggheatmap/MD5 | 14 ggheatmap-1.1/ggheatmap/NAMESPACE | 3 ggheatmap-1.1/ggheatmap/R/ggheatmap.R | 499 +++++++++++++--------- ggheatmap-1.1/ggheatmap/R/ggheatmap_plotlist.R |only ggheatmap-1.1/ggheatmap/R/ggheatmap_theme.R |only ggheatmap-1.1/ggheatmap/man/ggheatmap.Rd | 110 +++- ggheatmap-1.1/ggheatmap/man/ggheatmap_plotlist.Rd |only ggheatmap-1.1/ggheatmap/man/ggheatmap_theme.Rd |only 10 files changed, 389 insertions(+), 245 deletions(-)
Title: Extra 'Recipes' for Text Processing
Description: Converting text to numerical features requires
specifically created procedures, which are implemented as steps
according to the 'recipes' package. These steps allows for
tokenization, filtering, counting (tf and tfidf) and feature hashing.
Author: Emil Hvitfeldt [aut, cre] (<https://orcid.org/0000-0002-0679-1945>)
Maintainer: Emil Hvitfeldt <emilhhvitfeldt@gmail.com>
Diff between textrecipes versions 0.4.0 dated 2020-11-12 and 0.4.1 dated 2021-07-11
DESCRIPTION | 11 MD5 | 108 - NAMESPACE | 1 NEWS.md | 6 R/0_imports.R | 2 R/aaa.R | 6 R/clean_levels.R | 32 R/clean_names.R | 28 R/embeddings.R | 73 - R/hashing.R | 84 - R/lda.R | 41 R/lemma.R | 53 R/ngram.R | 41 R/pos_filter.R | 51 R/sequence_onehot.R | 60 R/show_tokens.R |only R/stem.R | 59 R/stopwords.R | 59 R/text_normalization.R | 39 R/textfeature.R | 59 R/tf.R | 85 - R/tfidf.R | 85 - R/tokenfilter.R | 71 R/tokenize.R | 219 ++- R/tokenlist.R | 3 R/tokenmerge.R | 42 R/untokenize.R | 47 README.md | 25 build/vignette.rds |binary inst/doc/Working-with-n-grams.html | 718 +++------- inst/doc/cookbook---using-more-complex-recipes-involving-text.html | 677 +++------ inst/doc/tokenlist.html | 263 --- man/show_tokens.Rd |only man/step_clean_levels.Rd | 30 man/step_clean_names.Rd | 31 man/step_lda.Rd | 32 man/step_lemma.Rd | 30 man/step_ngram.Rd | 30 man/step_pos_filter.Rd | 30 man/step_sequence_onehot.Rd | 32 man/step_stem.Rd | 30 man/step_stopwords.Rd | 30 man/step_text_normalization.Rd | 27 man/step_textfeature.Rd | 32 man/step_texthash.Rd | 37 man/step_tf.Rd | 38 man/step_tfidf.Rd | 36 man/step_tokenfilter.Rd | 30 man/step_tokenize.Rd | 172 ++ man/step_tokenmerge.Rd | 32 man/step_untokenize.Rd | 30 man/step_word_embeddings.Rd | 52 man/tokenlist.Rd | 1 src/RcppExports.cpp | 5 tests/testthat/test-lemma.R | 1 tests/testthat/test-pos_filter.R | 3 56 files changed, 1572 insertions(+), 2247 deletions(-)
Title: Statistical Modeling of Animal Movements
Description: Animal movement models including moving-resting process
with embedded Brownian motion according to
Yan et al. (2014) <doi:10.1007/s10144-013-0428-8>,
Pozdnyakov et al. (2017) <doi:10.1007/s11009-017-9547-6>,
Brownian motion with measurement error according to
Pozdnyakov et al. (2014) <doi:10.1890/13-0532.1>,
and moving-resting-handling process with embedded Brownian motion,
Pozdnyakov et al. (2018) <arXiv:1806.00849>.
Author: Chaoran Hu [aut, cre],
Vladimir Pozdnyakov [aut],
Jun Yan [aut]
Maintainer: Chaoran Hu <chaoran.hu@uconn.edu>
Diff between smam versions 0.5.4 dated 2020-10-10 and 0.6.0 dated 2021-07-11
DESCRIPTION | 10 MD5 | 42 +- NAMESPACE | 3 NEWS.md | 12 R/RcppExports.R | 20 + R/movmov.R |only R/seasonalFit.R | 67 --- R/seasonalTools.R | 7 build/vignette.rds |binary configure | 727 +++++++++++++++++++++------------------- configure.ac | 5 inst/CITATION | 8 inst/include/smam_RcppExports.h | 105 +++++ man/f109.Rd | 6 man/fitMM.Rd |only man/rMM.Rd |only man/transfData.Rd | 5 src/MRME.cpp | 40 +- src/Makevars.in | 2 src/Makevars.win | 2 src/RcppExports.cpp | 205 +++++++++++ src/movmov-llk.cpp |only src/movres-llk.cpp | 32 - src/thmam_likelihood.cpp | 144 +++---- 24 files changed, 909 insertions(+), 533 deletions(-)
Title: Manipulate and Map Origin-Destination Data
Description: The aim of 'od' is to provide tools and example datasets for working with
origin-destination ('OD') datasets of the type used to describe aggregate
urban mobility patterns (Carey et al. 1981) <doi:10.1287/trsc.15.1.32>.
The package builds on functions for working with 'OD' data in the package 'stplanr',
(Lovelace and Ellison 2018) <doi:10.32614/RJ-2018-053> with a focus on computational
efficiency and support for the 'sf' class system (Pebesma 2018) <doi:10.32614/RJ-2018-009>.
With few dependencies and a simple class system based on data frames,
the package is intended to facilitate efficient analysis of 'OD' datasets
and to provide a place for developing new functions.
The package enables the creation and analysis of geographic entities
representing large scale mobility patterns,
from daily travel between zones in cities to migration between countries.
Author: Robin Lovelace [aut, cre] (<https://orcid.org/0000-0001-5679-6536>),
David Cooley [ctb]
Maintainer: Robin Lovelace <rob00x@gmail.com>
Diff between od versions 0.3.0 dated 2021-07-10 and 0.3.1 dated 2021-07-11
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/jitter.R | 12 ++++++++++-- inst/doc/od.html | 4 ++-- 5 files changed, 23 insertions(+), 11 deletions(-)
Title: Create and Deploy Surveys in 'Shiny'
Description: Easily create and deploy surveys in 'Shiny'. This package includes
a minimalistic framework similar to 'Google Forms' that allows for url-based
user tracking, customizable submit actions, easy survey-theming, and more.
Author: Jonathan Trattner [aut, cre] (<https://orcid.org/0000-0002-1097-7603>),
Lucy D'Agostino McGowan [aut],
Paul Le Grand [ctb]
Maintainer: Jonathan Trattner <jdt@jdtrat.com>
Diff between shinysurveys versions 0.1.2 dated 2021-02-19 and 0.2.0 dated 2021-07-11
shinysurveys-0.1.2/shinysurveys/tests/testthat/_snaps/survey_code.md |only shinysurveys-0.2.0/shinysurveys/DESCRIPTION | 12 shinysurveys-0.2.0/shinysurveys/MD5 | 98 ++ shinysurveys-0.2.0/shinysurveys/NAMESPACE | 9 shinysurveys-0.2.0/shinysurveys/NEWS.md | 36 + shinysurveys-0.2.0/shinysurveys/R/demo_survey.R | 56 + shinysurveys-0.2.0/shinysurveys/R/extend_shinysurveys.R |only shinysurveys-0.2.0/shinysurveys/R/helpers-survey-code.R | 101 ++- shinysurveys-0.2.0/shinysurveys/R/misc.R |only shinysurveys-0.2.0/shinysurveys/R/numberInput.R |only shinysurveys-0.2.0/shinysurveys/R/radioMatrixInput.R |only shinysurveys-0.2.0/shinysurveys/R/save_data.R |only shinysurveys-0.2.0/shinysurveys/R/shinysurveys-js.R |only shinysurveys-0.2.0/shinysurveys/R/survey_code.R | 336 +++++++--- shinysurveys-0.2.0/shinysurveys/R/zzz.R |only shinysurveys-0.2.0/shinysurveys/README.md | 27 shinysurveys-0.2.0/shinysurveys/build |only shinysurveys-0.2.0/shinysurveys/inst/doc |only shinysurveys-0.2.0/shinysurveys/inst/radioMatrixInput |only shinysurveys-0.2.0/shinysurveys/inst/render_survey.scss | 49 - shinysurveys-0.2.0/shinysurveys/inst/save_data.js |only shinysurveys-0.2.0/shinysurveys/inst/shinysurveys-js.js |only shinysurveys-0.2.0/shinysurveys/man/addPages.Rd |only shinysurveys-0.2.0/shinysurveys/man/add_class.Rd |only shinysurveys-0.2.0/shinysurveys/man/button_placeholders.Rd |only shinysurveys-0.2.0/shinysurveys/man/create_radio_input_id.Rd |only shinysurveys-0.2.0/shinysurveys/man/demo_survey.Rd | 2 shinysurveys-0.2.0/shinysurveys/man/demo_survey_multipage.Rd |only shinysurveys-0.2.0/shinysurveys/man/disable_element.Rd |only shinysurveys-0.2.0/shinysurveys/man/enable_element.Rd |only shinysurveys-0.2.0/shinysurveys/man/extendInputType.Rd |only shinysurveys-0.2.0/shinysurveys/man/getSurveyData.Rd |only shinysurveys-0.2.0/shinysurveys/man/listInputExtensions.Rd |only shinysurveys-0.2.0/shinysurveys/man/multipaged_ui.Rd |only shinysurveys-0.2.0/shinysurveys/man/numberInput.Rd |only shinysurveys-0.2.0/shinysurveys/man/radioBody.Rd |only shinysurveys-0.2.0/shinysurveys/man/radioMatHeader.Rd |only shinysurveys-0.2.0/shinysurveys/man/radioMatrixButtons.Rd |only shinysurveys-0.2.0/shinysurveys/man/radioMatrixInput.Rd |only shinysurveys-0.2.0/shinysurveys/man/remove_class.Rd |only shinysurveys-0.2.0/shinysurveys/man/renderSurvey.Rd | 42 + shinysurveys-0.2.0/shinysurveys/man/surveyID.Rd |only shinysurveys-0.2.0/shinysurveys/man/surveyLabel.Rd |only shinysurveys-0.2.0/shinysurveys/man/surveyOptions.Rd |only shinysurveys-0.2.0/shinysurveys/man/surveyOutput.Rd | 40 + shinysurveys-0.2.0/shinysurveys/man/title_placeholder.Rd |only shinysurveys-0.2.0/shinysurveys/man/toggle_element.Rd |only shinysurveys-0.2.0/shinysurveys/tests/testthat/_snaps/surveyOutput-ds_questions.md |only shinysurveys-0.2.0/shinysurveys/tests/testthat/_snaps/surveyOutput-instructions.md |only shinysurveys-0.2.0/shinysurveys/tests/testthat/_snaps/surveyOutput-matrix_questions.md |only shinysurveys-0.2.0/shinysurveys/tests/testthat/_snaps/surveyOutput-paged_questions.md |only shinysurveys-0.2.0/shinysurveys/tests/testthat/_snaps/surveyOutput-teaching_r_questions.md |only shinysurveys-0.2.0/shinysurveys/tests/testthat/test-get_survey_data.R |only shinysurveys-0.2.0/shinysurveys/tests/testthat/test-surveyOutput-ds_questions.R |only shinysurveys-0.2.0/shinysurveys/tests/testthat/test-surveyOutput-instructions.R |only shinysurveys-0.2.0/shinysurveys/tests/testthat/test-surveyOutput-matrix_questions.R |only shinysurveys-0.2.0/shinysurveys/tests/testthat/test-surveyOutput-paged_questions.R |only shinysurveys-0.2.0/shinysurveys/tests/testthat/test-surveyOutput-teaching_r_questions.R |only shinysurveys-0.2.0/shinysurveys/tests/testthat/test-survey_code.R | 106 ++- shinysurveys-0.2.0/shinysurveys/vignettes |only 60 files changed, 749 insertions(+), 165 deletions(-)
Title: Isolation-Based Outlier Detection
Description: Fast and multi-threaded implementation of
isolation forest (Liu, Ting, Zhou (2008) <doi:10.1109/ICDM.2008.17>),
extended isolation forest (Hariri, Kind, Brunner (2018) <arXiv:1811.02141>),
SCiForest (Liu, Ting, Zhou (2010) <doi:10.1007/978-3-642-15883-4_18>),
and fair-cut forest (Cortes (2019) <arXiv:1911.06646>),
for isolation-based outlier detection, clustered outlier detection, distance or similarity
approximation (Cortes (2019) <arXiv:1910.12362>),
and imputation of missing values (Cortes (2019) <arXiv:1911.06646>),
based on random or guided decision tree splitting. Provides simple heuristics for fitting the model to
categorical columns and handling missing data, and offers options for varying between random and guided
splits, and for using different splitting criteria.
Author: David Cortes
Maintainer: David Cortes <david.cortes.rivera@gmail.com>
Diff between isotree versions 0.2.7 dated 2021-03-01 and 0.2.8 dated 2021-07-11
isotree-0.2.7/isotree/src/external_facing_generic.h |only isotree-0.2.7/isotree/src/instantiate_model.cpp |only isotree-0.2.7/isotree/src/isotree_exportable.h |only isotree-0.2.8/isotree/DESCRIPTION | 7 isotree-0.2.8/isotree/MD5 | 39 - isotree-0.2.8/isotree/R/RcppExports.R | 24 + isotree-0.2.8/isotree/R/helpers.R | 42 - isotree-0.2.8/isotree/R/isoforest.R | 394 +++++++----------- isotree-0.2.8/isotree/man/add.isolation.tree.Rd | 18 isotree-0.2.8/isotree/man/append.trees.Rd | 26 - isotree-0.2.8/isotree/man/isolation.forest.Rd | 42 + isotree-0.2.8/isotree/man/load.isotree.model.Rd | 4 isotree-0.2.8/isotree/man/predict.isolation_forest.Rd | 15 isotree-0.2.8/isotree/man/unpack.isolation.forest.Rd | 34 - isotree-0.2.8/isotree/src/RcppExports.cpp | 72 +++ isotree-0.2.8/isotree/src/Rwrapper.cpp | 108 ++++ isotree-0.2.8/isotree/src/dist.h | 4 isotree-0.2.8/isotree/src/extended.h | 4 isotree-0.2.8/isotree/src/instantiate_model.h | 14 isotree-0.2.8/isotree/src/isoforest.h | 4 isotree-0.2.8/isotree/src/isotree.h | 66 +-- isotree-0.2.8/isotree/src/merge_models.cpp | 24 + 22 files changed, 522 insertions(+), 419 deletions(-)