Title: Construct Modeling Packages
Description: Building modeling packages is hard. A large amount
of effort generally goes into providing an implementation for a new
method that is efficient, fast, and correct, but often less emphasis
is put on the user interface. A good interface requires specialized
knowledge about S3 methods and formulas, which the average package
developer might not have. The goal of 'hardhat' is to reduce the
burden around building new modeling packages by providing
functionality for preprocessing, predicting, and validating input.
Author: Davis Vaughan [aut, cre],
Max Kuhn [aut],
RStudio [cph]
Maintainer: Davis Vaughan <davis@rstudio.com>
Diff between hardhat versions 0.1.5 dated 2020-11-09 and 0.1.6 dated 2021-07-14
hardhat-0.1.5/hardhat/R/compat-lifecycle.R |only hardhat-0.1.6/hardhat/DESCRIPTION | 9 hardhat-0.1.6/hardhat/MD5 | 27 - hardhat-0.1.6/hardhat/NAMESPACE | 7 hardhat-0.1.6/hardhat/NEWS.md | 12 hardhat-0.1.6/hardhat/R/blueprint-formula.R | 35 - hardhat-0.1.6/hardhat/R/extract.R |only hardhat-0.1.6/hardhat/R/scream.R | 2 hardhat-0.1.6/hardhat/README.md | 12 hardhat-0.1.6/hardhat/build/hardhat.pdf |binary hardhat-0.1.6/hardhat/build/vignette.rds |binary hardhat-0.1.6/hardhat/inst/doc/forge.html | 257 -------------- hardhat-0.1.6/hardhat/inst/doc/mold.html | 270 +-------------- hardhat-0.1.6/hardhat/inst/doc/package.html | 248 ------------- hardhat-0.1.6/hardhat/man/hardhat-extract.Rd |only hardhat-0.1.6/hardhat/tests/testthat/test-mold-formula.R | 22 - 16 files changed, 99 insertions(+), 802 deletions(-)
Title: PARAFAC Analysis of Fluorescence Excitation-Emission Matrices
Description: Perform parallel factor analysis (PARAFAC: Hitchcock, 1927)
<doi:10.1002/sapm192761164> on fluorescence excitation-emission
matrices (FEEMs): handle scattering signal and inner filter
effect, scale the dataset, fit the model; perform split-half
validation or jack-knifing. A modified approach called
"randomised split-half" is also available. The package has a low
dependency footprint (only two direct dependencies not in core
or recommended; four total non-core/recommended dependencies)
and has been tested on a wide range of R versions (including R
as old as 3.3.3 from Debian Stretch).
Author: Ivan Krylov [aut, cre],
Timur Labutin [ths]
Maintainer: Ivan Krylov <ikrylov@laser.chem.msu.ru>
Diff between albatross versions 0.3-1 dated 2021-04-03 and 0.3-2 dated 2021-07-14
DESCRIPTION | 7 +-- MD5 | 44 ++++++++++--------- NAMESPACE | 2 R/feemscatter.R | 10 ++-- R/grid.R | 2 R/jackknife.R | 6 +- R/openfluor.R | 2 R/parafac.R | 17 ++++--- R/whittaker.R | 106 +++++++++++++++++++++++++++--------------------- build/partial.rdb |binary inst/NEWS.Rd | 19 +++++++- man/feem.Rd | 12 ++--- man/feemcube.Rd | 9 +++- man/feemjackknife.Rd | 2 man/feemparafac.Rd | 13 ++--- man/feemscale.Rd | 14 ++++++ man/feemscatter.Rd | 25 ++++------- man/feemsplithalf.Rd | 2 man/figures |only man/macros/albatross.Rd | 1 man/whittaker2.Rd |only tests/grid.R | 13 +++++ tests/parafac.R | 9 +++- tests/whittaker.R |only 24 files changed, 191 insertions(+), 124 deletions(-)
Title: Customise 'Shiny' Disconnected Screens and Error Messages
Description: Customise 'Shiny' disconnected screens as well as sanitize error messages to make them clearer and friendlier to the user.
Author: John Coene [aut, cre]
Maintainer: John Coene <jcoenep@gmail.com>
Diff between sever versions 0.0.6 dated 2020-10-19 and 0.0.7 dated 2021-07-14
sever-0.0.6/sever/inst/assets |only sever-0.0.7/sever/DESCRIPTION | 13 ++++------ sever-0.0.7/sever/MD5 | 33 +++++++++++--------------- sever-0.0.7/sever/NAMESPACE | 5 ++- sever-0.0.7/sever/NEWS.md | 8 +++++- sever-0.0.7/sever/R/chisel.R | 21 +++++++++++++--- sever-0.0.7/sever/R/cleave.R | 22 ++++++++++++++--- sever-0.0.7/sever/R/deps.R | 27 +++++++++++++-------- sever-0.0.7/sever/R/rupture.R | 43 +++++++++++++++++++++++++--------- sever-0.0.7/sever/R/sever.R | 36 ++++++++++++++++++++++------ sever-0.0.7/sever/R/utils.R | 5 +++ sever-0.0.7/sever/R/zzz.R | 5 --- sever-0.0.7/sever/README.md | 6 ++-- sever-0.0.7/sever/inst/packer |only sever-0.0.7/sever/man/dependencies.Rd | 5 +++ sever-0.0.7/sever/man/rupture.Rd | 2 - sever-0.0.7/sever/man/sever.Rd | 2 - 17 files changed, 156 insertions(+), 77 deletions(-)
Title: Create Interactive Graphs with 'Echarts JavaScript' Version 5
Description: Easily create interactive charts by leveraging the 'Echarts Javascript' library which includes
36 chart types, themes, 'Shiny' proxies and animations.
Author: John Coene [aut, cre, cph],
Wei Su [ctb],
Helgasoft [ctb],
Xianying Tan [ctb] (<https://orcid.org/0000-0002-6072-3521>),
Robin Cura [ctb] (<https://orcid.org/0000-0001-5926-1828>)
Maintainer: John Coene <jcoenep@gmail.com>
Diff between echarts4r versions 0.4.0 dated 2021-03-07 and 0.4.1 dated 2021-07-14
echarts4r-0.4.0/echarts4r/R/utils-pipe.R |only echarts4r-0.4.0/echarts4r/man/pipe.Rd |only echarts4r-0.4.1/echarts4r/DESCRIPTION | 23 echarts4r-0.4.1/echarts4r/MD5 | 280 ++-- echarts4r-0.4.1/echarts4r/NAMESPACE | 6 echarts4r-0.4.1/echarts4r/NEWS.md | 10 echarts4r-0.4.1/echarts4r/R/actions.R | 90 - echarts4r-0.4.1/echarts4r/R/add.R | 600 ++++------ echarts4r-0.4.1/echarts4r/R/add_.R | 83 - echarts4r-0.4.1/echarts4r/R/append.R | 26 echarts4r-0.4.1/echarts4r/R/button.R | 12 echarts4r-0.4.1/echarts4r/R/calendar.R | 12 echarts4r-0.4.1/echarts4r/R/callbacks.R | 6 echarts4r-0.4.1/echarts4r/R/color.R | 8 echarts4r-0.4.1/echarts4r/R/echarts4r.R | 12 echarts4r-0.4.1/echarts4r/R/facets.R | 6 echarts4r-0.4.1/echarts4r/R/geo.R | 10 echarts4r-0.4.1/echarts4r/R/globe.R | 8 echarts4r-0.4.1/echarts4r/R/graphic.R | 14 echarts4r-0.4.1/echarts4r/R/grid.R | 158 +- echarts4r-0.4.1/echarts4r/R/grid3d.R | 28 echarts4r-0.4.1/echarts4r/R/helpers.R | 48 echarts4r-0.4.1/echarts4r/R/leaflet.R | 10 echarts4r-0.4.1/echarts4r/R/loading.R | 10 echarts4r-0.4.1/echarts4r/R/map.R | 114 + echarts4r-0.4.1/echarts4r/R/mark.R | 84 - echarts4r-0.4.1/echarts4r/R/nesting.R | 30 echarts4r-0.4.1/echarts4r/R/opts.R | 186 +-- echarts4r-0.4.1/echarts4r/R/plugins.R | 30 echarts4r-0.4.1/echarts4r/R/proxies.R | 64 - echarts4r-0.4.1/echarts4r/R/themes.R | 12 echarts4r-0.4.1/echarts4r/R/timeline.R | 16 echarts4r-0.4.1/echarts4r/R/utils.R | 96 - echarts4r-0.4.1/echarts4r/README.md | 2 echarts4r-0.4.1/echarts4r/inst/htmlwidgets/echarts4r.js | 22 echarts4r-0.4.1/echarts4r/inst/htmlwidgets/lib/echarts-4.8.0/echarts-en.min.js | 4 echarts4r-0.4.1/echarts4r/inst/htmlwidgets/lib/echarts-4.8.0/echarts-gl.min.js | 2 echarts4r-0.4.1/echarts4r/man/angle_axis.Rd | 22 echarts4r-0.4.1/echarts4r/man/append.Rd | 10 echarts4r-0.4.1/echarts4r/man/axis.Rd | 28 echarts4r-0.4.1/echarts4r/man/axis3d.Rd | 14 echarts4r-0.4.1/echarts4r/man/band.Rd | 8 echarts4r-0.4.1/echarts4r/man/band2.Rd | 16 echarts4r-0.4.1/echarts4r/man/callbacks.Rd | 6 echarts4r-0.4.1/echarts4r/man/connections.Rd | 18 echarts4r-0.4.1/echarts4r/man/e-tooltip.Rd | 20 echarts4r-0.4.1/echarts4r/man/e_add.Rd | 22 echarts4r-0.4.1/echarts4r/man/e_animation.Rd | 6 echarts4r-0.4.1/echarts4r/man/e_area.Rd | 16 echarts4r-0.4.1/echarts4r/man/e_axis_labels.Rd | 6 echarts4r-0.4.1/echarts4r/man/e_axis_stagger.Rd | 6 echarts4r-0.4.1/echarts4r/man/e_bar.Rd | 14 echarts4r-0.4.1/echarts4r/man/e_bar_3d.Rd | 50 echarts4r-0.4.1/echarts4r/man/e_boxplot.Rd | 6 echarts4r-0.4.1/echarts4r/man/e_brush.Rd | 18 echarts4r-0.4.1/echarts4r/man/e_button.Rd | 12 echarts4r-0.4.1/echarts4r/man/e_calendar.Rd | 12 echarts4r-0.4.1/echarts4r/man/e_candle.Rd | 6 echarts4r-0.4.1/echarts4r/man/e_capture.Rd | 8 echarts4r-0.4.1/echarts4r/man/e_cloud.Rd | 8 echarts4r-0.4.1/echarts4r/man/e_color.Rd | 8 echarts4r-0.4.1/echarts4r/man/e_correlations.Rd | 6 echarts4r-0.4.1/echarts4r/man/e_datazoom.Rd | 18 echarts4r-0.4.1/echarts4r/man/e_dispatch_action_p.Rd | 8 echarts4r-0.4.1/echarts4r/man/e_draft.Rd | 6 echarts4r-0.4.1/echarts4r/man/e_draw_p.Rd | 8 echarts4r-0.4.1/echarts4r/man/e_flip_coords.Rd | 6 echarts4r-0.4.1/echarts4r/man/e_flow_gl.Rd | 22 echarts4r-0.4.1/echarts4r/man/e_funnel.Rd | 4 echarts4r-0.4.1/echarts4r/man/e_gauge.Rd | 2 echarts4r-0.4.1/echarts4r/man/e_geo.Rd | 6 echarts4r-0.4.1/echarts4r/man/e_geo_3d.Rd | 4 echarts4r-0.4.1/echarts4r/man/e_get_data.Rd | 6 echarts4r-0.4.1/echarts4r/man/e_globe.Rd | 8 echarts4r-0.4.1/echarts4r/man/e_grid.Rd | 14 echarts4r-0.4.1/echarts4r/man/e_grid_3d.Rd | 14 echarts4r-0.4.1/echarts4r/man/e_heatmap.Rd | 52 echarts4r-0.4.1/echarts4r/man/e_hide_grid_lines.Rd | 6 echarts4r-0.4.1/echarts4r/man/e_labels.Rd | 22 echarts4r-0.4.1/echarts4r/man/e_legend.Rd | 8 echarts4r-0.4.1/echarts4r/man/e_line.Rd | 16 echarts4r-0.4.1/echarts4r/man/e_lines.Rd | 16 echarts4r-0.4.1/echarts4r/man/e_liquid.Rd | 6 echarts4r-0.4.1/echarts4r/man/e_list.Rd | 2 echarts4r-0.4.1/echarts4r/man/e_map_register.Rd | 15 echarts4r-0.4.1/echarts4r/man/e_mark_p.Rd | 24 echarts4r-0.4.1/echarts4r/man/e_modularity.Rd | 8 echarts4r-0.4.1/echarts4r/man/e_parallel.Rd | 4 echarts4r-0.4.1/echarts4r/man/e_pictorial.Rd | 24 echarts4r-0.4.1/echarts4r/man/e_pie.Rd | 14 echarts4r-0.4.1/echarts4r/man/e_polar.Rd | 10 echarts4r-0.4.1/echarts4r/man/e_radar.Rd | 8 echarts4r-0.4.1/echarts4r/man/e_radar_opts.Rd | 10 echarts4r-0.4.1/echarts4r/man/e_remove.Rd | 8 echarts4r-0.4.1/echarts4r/man/e_restore.Rd | 10 echarts4r-0.4.1/echarts4r/man/e_river.Rd | 10 echarts4r-0.4.1/echarts4r/man/e_sankey.Rd | 4 echarts4r-0.4.1/echarts4r/man/e_scatter_3d.Rd | 32 echarts4r-0.4.1/echarts4r/man/e_scatter_gl.Rd | 14 echarts4r-0.4.1/echarts4r/man/e_single_axis.Rd | 6 echarts4r-0.4.1/echarts4r/man/e_step.Rd | 20 echarts4r-0.4.1/echarts4r/man/e_sunburst.Rd | 14 echarts4r-0.4.1/echarts4r/man/e_surface.Rd | 6 echarts4r-0.4.1/echarts4r/man/e_text_style.Rd | 8 echarts4r-0.4.1/echarts4r/man/e_title.Rd | 10 echarts4r-0.4.1/echarts4r/man/e_tree.Rd | 4 echarts4r-0.4.1/echarts4r/man/e_treemap.Rd | 4 echarts4r-0.4.1/echarts4r/man/e_visual_map.Rd | 32 echarts4r-0.4.1/echarts4r/man/e_visual_map_range.Rd | 10 echarts4r-0.4.1/echarts4r/man/e_zoom.Rd | 10 echarts4r-0.4.1/echarts4r/man/echartsNJSON.Rd | 8 echarts4r-0.4.1/echarts4r/man/errorbar.Rd | 14 echarts4r-0.4.1/echarts4r/man/formatters.Rd | 8 echarts4r-0.4.1/echarts4r/man/graph.Rd | 12 echarts4r-0.4.1/echarts4r/man/graph_action.Rd | 8 echarts4r-0.4.1/echarts4r/man/graphic.Rd | 6 echarts4r-0.4.1/echarts4r/man/highlight_action.Rd | 10 echarts4r-0.4.1/echarts4r/man/highlight_proxy.Rd | 14 echarts4r-0.4.1/echarts4r/man/histogram.Rd | 16 echarts4r-0.4.1/echarts4r/man/init.Rd | 12 echarts4r-0.4.1/echarts4r/man/leaflet.Rd | 8 echarts4r-0.4.1/echarts4r/man/legend_action.Rd | 12 echarts4r-0.4.1/echarts4r/man/line3D.Rd | 40 echarts4r-0.4.1/echarts4r/man/loading.Rd | 10 echarts4r-0.4.1/echarts4r/man/map.Rd | 60 - echarts4r-0.4.1/echarts4r/man/map_actions.Rd | 10 echarts4r-0.4.1/echarts4r/man/mapbox.Rd | 8 echarts4r-0.4.1/echarts4r/man/mark.Rd | 30 echarts4r-0.4.1/echarts4r/man/node_adjacency.Rd | 10 echarts4r-0.4.1/echarts4r/man/pie_action.Rd | 10 echarts4r-0.4.1/echarts4r/man/radius_axis.Rd | 10 echarts4r-0.4.1/echarts4r/man/scatter.Rd | 54 echarts4r-0.4.1/echarts4r/man/smooth.Rd | 28 echarts4r-0.4.1/echarts4r/man/theme.Rd | 12 echarts4r-0.4.1/echarts4r/man/timeline-opts.Rd | 16 echarts4r-0.4.1/echarts4r/man/toolbox.Rd | 18 echarts4r-0.4.1/echarts4r/man/tooltip_action.Rd | 10 echarts4r-0.4.1/echarts4r/man/tooltip_proxy.Rd | 16 echarts4r-0.4.1/echarts4r/tests/testthat/test-chart_types.R | 202 +-- echarts4r-0.4.1/echarts4r/tests/testthat/test-map.R | 35 echarts4r-0.4.1/echarts4r/tests/testthat/test-statistical.R | 62 - echarts4r-0.4.1/echarts4r/tests/testthat/test-webgl.R | 32 142 files changed, 1967 insertions(+), 1875 deletions(-)
Title: An Opinionated Framework for Using 'JavaScript'
Description: Enforces good practice and provides convenience functions to make work with 'JavaScript'
not just easier but also scalable. It is a robust wrapper to 'NPM' and 'webpack' that
enables to compartmentalize 'JavaScript' code, leverage 'NPM' packages, and much more.
Author: John Coene [aut, cre] (<https://orcid.org/0000-0002-6637-4107>)
Maintainer: John Coene <jcoenep@gmail.com>
Diff between packer versions 0.0.6 dated 2020-10-20 and 0.1.0 dated 2021-07-14
DESCRIPTION | 11 -- MD5 | 84 ++++++++++------ NAMESPACE | 26 +++++ NEWS.md | 25 ++++ R/ambiorix.R | 6 - R/assertions.R | 34 +++++- R/bundle.R | 37 +++---- R/engine.R |only R/extension.R | 6 - R/golem.R | 6 - R/input.R | 6 - R/library.R |only R/loaders.R | 128 +++++++++++++++++++++++-- R/npm.R | 202 ++++++++++------------------------------ R/output.R | 6 - R/plugins.R | 82 ++++++++++++++-- R/react.R | 4 R/rmd.R | 6 - R/test.R | 8 - R/typescript.R |only R/utils.R | 44 ++++++++ R/vue.R | 4 R/widget.R | 6 - R/yarn.R |only README.md | 27 ++++- inst/common/webpack.common.js | 44 +++++++- man/add_plugin_eslint.Rd |only man/add_plugin_prettier.Rd |only man/engine.Rd |only man/engine_console.Rd |only man/make_library.Rd |only man/npm_install.Rd | 17 +-- man/npm_outdated.Rd |only man/npm_run.Rd |only man/npm_update.Rd |only man/set_npm.Rd | 8 - man/set_yarn.Rd |only man/style_loaders.Rd | 15 ++ man/types.Rd |only man/use_loader_rule.Rd | 11 +- man/use_loader_ts.Rd |only man/yarn_clean.Rd |only man/yarn_console.Rd |only man/yarn_global.Rd |only man/yarn_install.Rd |only man/yarn_outdated.Rd |only man/yarn_run.Rd |only man/yarn_upgrade.Rd |only man/yarn_version.Rd |only tests/fns.R | 10 + tests/testthat/test-extension.R | 4 tests/testthat/test-golem.R | 6 + tests/testthat/test-input.R | 1 tests/testthat/test-npm.R |only tests/testthat/test-ts.R |only tests/testthat/test-yarn.R |only 56 files changed, 598 insertions(+), 276 deletions(-)
Title: Multivariate Data Analysis Laboratory
Description: An open-source implementation of latent variable methods and multivariate modeling tools. The focus is on exploratory analyses using dimensionality reduction methods including low dimensional embedding, classical multivariate statistical tools, and tools for enhanced interpretation of machine learning methods (i.e. intelligible models to provide important information for end-users). Target domains include extension to dedicated applications e.g. for manufacturing process modeling, spectroscopic analyses, and data mining.
Author: Nelson Lee Afanador, Thanh Tran, Lionel Blanchet, and Richard Baumgartner
Maintainer: Nelson Lee Afanador <nelson.afanador@gmail.com>
Diff between mvdalab versions 1.5 dated 2021-05-14 and 1.6 dated 2021-07-14
DESCRIPTION | 10 - MD5 | 16 +- NEWS.md | 9 + R/mvdaboot.R | 300 ++++++++++++++++++++++--------------------- R/plsFit.R | 17 +- man/mvdaboot.Rd | 5 man/mvdalab-package-title.Rd | 4 man/plot.wrtpls.Rd | 3 man/plsFit.Rd | 11 + 9 files changed, 206 insertions(+), 169 deletions(-)
Title: Volume Approximation and Sampling of Convex Polytopes
Description: Provides an R interface for 'volesti' C++ package. 'volesti' computes estimations of volume
of polytopes given by (i) a set of points, (ii) linear inequalities or (iii) Minkowski sum of segments
(a.k.a. zonotopes). There are three algorithms for volume estimation as well as algorithms
for sampling, rounding and rotating polytopes. Moreover, 'volesti' provides algorithms for
estimating copulas useful in computational finance.
Author: Vissarion Fisikopoulos <vissarion.fisikopoulos@gmail.com> [aut, cph, cre],
Apostolos Chalkis <tolis.chal@gmail.com> [cph, aut],
contributors in file inst/AUTHORS
Maintainer: Vissarion Fisikopoulos <vissarion.fisikopoulos@gmail.com>
Diff between volesti versions 1.1.2 dated 2020-10-19 and 1.1.2-2 dated 2021-07-14
volesti-1.1.2-2/volesti/DESCRIPTION | 8 +- volesti-1.1.2-2/volesti/MD5 | 21 +++---- volesti-1.1.2-2/volesti/NAMESPACE | 4 - volesti-1.1.2-2/volesti/NEWS.md | 11 +++ volesti-1.1.2-2/volesti/R/RcppExports.R | 25 +-------- volesti-1.1.2-2/volesti/R/read_sdpa_file.R | 6 +- volesti-1.1.2-2/volesti/man/load_sdpa_format_file.Rd | 10 +-- volesti-1.1.2-2/volesti/man/read_sdpa_format_file.Rd |only volesti-1.1.2-2/volesti/src/RcppExports.cpp | 12 ---- volesti-1.1.2-2/volesti/src/load_sdpa_format_file.cpp | 10 +-- volesti-1.1.2-2/volesti/src/write_sdpa_format_file.cpp | 47 ----------------- volesti-1.1.2/volesti/man/loadSdpaFormatFile.Rd |only volesti-1.1.2/volesti/man/readSdpaFormatFile.Rd |only 13 files changed, 38 insertions(+), 116 deletions(-)
Title: Data Processing after Running 'GGIR' for Accelerometer Data
Description: Generate all necessary R/Rmd/shell files for data processing after running 'GGIR' (v2.4.0) for accelerometer data. In part 1, all csv files in the GGIR output directory were read, transformed and then merged. In part 2, the GGIR output files were checked and summarized in one excel sheet. In part 3, the merged data was cleaned according to the number of valid hours on each night and the number of valid days for each subject. In part 4, the cleaned activity data was imputed by the average Euclidean norm minus one (ENMO) over all the valid days for each subject. Finally, a comprehensive report of data processing was created using Rmarkdown, and the report includes few exploratory plots and multiple commonly used features extracted from minute level actigraphy data.
Author: Wei Guo [aut, cre],
Vadim Zipunnikov [aut],
Kathleen Merikangas [aut]
Maintainer: Wei Guo <wei.guo3@nih.gov>
Diff between postGGIR versions 2.0.0 dated 2021-05-06 and 2.4.0 dated 2021-07-14
DESCRIPTION | 8 +++---- MD5 | 22 ++++++++++----------- R/ActExtendCosinor2.R | 20 ++++++++++++++++--- R/part1_csv_data_transform.R | 13 ++++++++---- R/part2_summary.pipeline.R | 13 +++++++----- build/vignette.rds |binary inst/doc/postGGIR.html | 6 ++--- inst/doc/postGGIR.output.description.xlsx |binary inst/template/part5_postGGIR.report.Rmd | 12 ++++++----- inst/template/part7a_JIVE_1_featureExtraction.Rmd | 10 +++++---- inst/template/part7b_JIVE_2_featureMerge.Rmd | 23 ++++++++++++++-------- vignettes/postGGIR.output.description.xlsx |binary 12 files changed, 80 insertions(+), 47 deletions(-)
Title: Data Sets Used Useful for Modeling Packages
Description: Data sets used for demonstrating or testing model-related
packages are contained in this package.
Author: Max Kuhn [aut, cre],
RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between modeldata versions 0.1.0 dated 2020-10-22 and 0.1.1 dated 2021-07-14
modeldata-0.1.0/modeldata/R/okc_text.R |only modeldata-0.1.0/modeldata/R/two_class_example.R |only modeldata-0.1.0/modeldata/man/okc_text.Rd |only modeldata-0.1.1/modeldata/DESCRIPTION | 29 ++-- modeldata-0.1.1/modeldata/MD5 | 112 +++++++++--------- modeldata-0.1.1/modeldata/NEWS.md | 6 modeldata-0.1.1/modeldata/R/churn.R | 2 modeldata-0.1.1/modeldata/R/grants.R | 2 modeldata-0.1.1/modeldata/R/meats.R | 2 modeldata-0.1.1/modeldata/R/okc.R | 29 +++- modeldata-0.1.1/modeldata/R/penguins.R | 2 modeldata-0.1.1/modeldata/R/tate_text.R |only modeldata-0.1.1/modeldata/R/two_class_dat.R | 18 ++ modeldata-0.1.1/modeldata/README.md | 17 +- modeldata-0.1.1/modeldata/build |only modeldata-0.1.1/modeldata/data/Chicago.rda |binary modeldata-0.1.1/modeldata/data/Sacramento.RData |binary modeldata-0.1.1/modeldata/data/Smithsonian.RData |binary modeldata-0.1.1/modeldata/data/ad_data.RData |binary modeldata-0.1.1/modeldata/data/ames.rda |binary modeldata-0.1.1/modeldata/data/attrition.RData |binary modeldata-0.1.1/modeldata/data/biomass.RData |binary modeldata-0.1.1/modeldata/data/bivariate.RData |binary modeldata-0.1.1/modeldata/data/car_prices.RData |binary modeldata-0.1.1/modeldata/data/cells.RData |binary modeldata-0.1.1/modeldata/data/check_times.rda |binary modeldata-0.1.1/modeldata/data/concrete.RData |binary modeldata-0.1.1/modeldata/data/covers.RData |binary modeldata-0.1.1/modeldata/data/credit_data.RData |binary modeldata-0.1.1/modeldata/data/crickets.rda |binary modeldata-0.1.1/modeldata/data/datalist | 3 modeldata-0.1.1/modeldata/data/drinks.rda |binary modeldata-0.1.1/modeldata/data/grants.rda |binary modeldata-0.1.1/modeldata/data/hpc_cv.rda |binary modeldata-0.1.1/modeldata/data/hpc_data.RData |binary modeldata-0.1.1/modeldata/data/lending_club.rda |binary modeldata-0.1.1/modeldata/data/meats.RData |binary modeldata-0.1.1/modeldata/data/mlc_churn.RData |binary modeldata-0.1.1/modeldata/data/oils.RData |binary modeldata-0.1.1/modeldata/data/okc.RData |binary modeldata-0.1.1/modeldata/data/okc_text.rda |binary modeldata-0.1.1/modeldata/data/parabolic.rda |binary modeldata-0.1.1/modeldata/data/pathology.rda |binary modeldata-0.1.1/modeldata/data/pd_speech.rda |binary modeldata-0.1.1/modeldata/data/penguins.rda |binary modeldata-0.1.1/modeldata/data/scat.RData |binary modeldata-0.1.1/modeldata/data/small_fine_foods.RData |binary modeldata-0.1.1/modeldata/data/solubility_test.rda |binary modeldata-0.1.1/modeldata/data/stackoverflow.rda |binary modeldata-0.1.1/modeldata/data/tate_text.rda |only modeldata-0.1.1/modeldata/data/two_class_dat.RData |binary modeldata-0.1.1/modeldata/data/two_class_example.rda |binary modeldata-0.1.1/modeldata/data/wa_churn.rda |binary modeldata-0.1.1/modeldata/man/figures |only modeldata-0.1.1/modeldata/man/grants.Rd | 2 modeldata-0.1.1/modeldata/man/meats.Rd | 2 modeldata-0.1.1/modeldata/man/mlc_churn.Rd | 2 modeldata-0.1.1/modeldata/man/okc.Rd | 26 +++- modeldata-0.1.1/modeldata/man/penguins.Rd | 2 modeldata-0.1.1/modeldata/man/tate_text.Rd |only modeldata-0.1.1/modeldata/man/two_class_example.Rd | 2 61 files changed, 164 insertions(+), 94 deletions(-)
Title: Compute, Handle and Plot Incidence of Dated Events
Description: Provides functions and classes to compute, handle and visualise
incidence from dated events for a defined time interval. Dates can be
provided in various standard formats. The class 'incidence2' is used to store
computed incidence and can be easily manipulated, subsetted, and plotted.
This package is part of the RECON (<https://www.repidemicsconsortium.org/>)
toolkit for outbreak analysis (<https://www.reconverse.org>).
Author: Tim Taylor [aut, cre] (<https://orcid.org/0000-0002-8587-7113>),
Thibaut Jombart [ctb],
Zhian N. Kamvar [ctb] (<https://orcid.org/0000-0003-1458-7108>)
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>
Diff between incidence2 versions 1.2.0 dated 2021-07-07 and 1.2.1 dated 2021-07-14
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 6 ++++++ R/build_incidence.R | 12 ++++++------ R/incidence.R | 4 ---- R/make_grate.R | 7 +++++++ inst/doc/handling_incidence_objects.html | 24 ++++++++++++------------ tests/testthat/test-incidence.R | 6 ++++-- 8 files changed, 45 insertions(+), 34 deletions(-)
Title: Plot an Epidemic Curve
Description: Creates simple or stacked epidemic curves for hourly, daily, weekly or monthly outcome data.
Author: Jean Pierre Decorps [aut, cre]
Maintainer: Jean Pierre Decorps <jean.pierre.decorps@gmail.com>
Diff between EpiCurve versions 2.4-1 dated 2020-08-26 and 2.4-2 dated 2021-07-14
DESCRIPTION | 9 +++---- MD5 | 10 ++++---- R/EpiCurve..R | 27 +++++++++-------------- README.md | 2 + inst/doc/EpiCurve.R | 58 +++++++++++++++++++++++++------------------------- inst/doc/EpiCurve.pdf |binary 6 files changed, 51 insertions(+), 55 deletions(-)
Title: Efficient Model Functions for Bagging
Description: Tree- and rule-based models can be bagged using this package
and their predictions equations are stored in an efficient format to
reduce the model objects size and speed.
Author: Max Kuhn [aut, cre] (<https://orcid.org/0000-0003-2402-136X>),
RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between baguette versions 0.1.0 dated 2020-10-28 and 0.1.1 dated 2021-07-14
DESCRIPTION | 48 ++++++++++++++++++++++----------------------- MD5 | 26 +++++++++++++----------- NEWS.md | 6 +++++ R/bag_tree.R | 14 ++++++------- R/bagger.R | 4 +-- R/cart.R | 20 +++++++++++++----- R/class_cost.R | 2 - R/misc.R | 34 +++++++++++++++++++++---------- README.md | 27 +++++++++++++------------ inst |only man/bag_tree.Rd | 14 ++++++------- man/bagger.Rd | 2 - man/class_cost.Rd | 2 - tests/spelling.R |only tests/testthat/test-cart.R | 25 +++++++++++++++++++++-- 15 files changed, 137 insertions(+), 87 deletions(-)
Title: Character String Processing Facilities
Description: A multitude of character string/text/natural language
processing tools: pattern searching (e.g., with 'Java'-like regular
expressions or the 'Unicode' collation algorithm), random string generation,
case mapping, string transliteration, concatenation, sorting, padding,
wrapping, Unicode normalisation, date-time formatting and parsing,
and many more. They are fast, consistent, convenient, and -
thanks to 'ICU' (International Components for Unicode) -
portable across all locales and platforms.
Author: Marek Gagolewski [aut, cre, cph] (<https://orcid.org/0000-0003-0637-6028>),
Bartek Tartanus [ctb],
and others (stringi source code);
IBM, Unicode, Inc. and others (ICU4C source code, Unicode Character Database)
Maintainer: Marek Gagolewski <marek@gagolewski.com>
Diff between stringi versions 1.6.2 dated 2021-05-17 and 1.7.2 dated 2021-07-14
DESCRIPTION | 8 MD5 | 301 ++++---- NAMESPACE | 4 NEWS | 89 ++ R/encoding_management.R | 2 R/internal_prepare_arg.R | 56 - R/length.R | 6 R/pad.R | 8 R/search.R | 34 R/search_count_4.R | 2 R/search_detect_4.R | 24 R/search_extract_4.R | 2 R/search_locate_4.R | 276 ++++--- R/search_locate_bound.R | 125 ++- R/search_match_4.R | 13 R/search_replace_4.R | 23 R/search_subset_4.R | 51 - R/sprintf.R | 213 +++++- R/sub.R | 189 +++-- R/time_calendar.R | 8 R/time_format.R | 157 +--- R/trans_casemap.R | 4 R/trans_transliterate.R | 47 + R/trim.R | 44 - R/wrap.R | 14 man/about_arguments.Rd | 28 man/about_search.Rd | 1 man/about_search_charclass.Rd | 2 man/about_search_regex.Rd | 33 man/operator_dollar.Rd | 34 man/stri_count.Rd | 2 man/stri_datetime_add.Rd | 4 man/stri_datetime_fields.Rd | 4 man/stri_datetime_format.Rd | 45 - man/stri_datetime_fstr.Rd | 21 man/stri_detect.Rd | 2 man/stri_extract.Rd | 2 man/stri_isempty.Rd | 3 man/stri_length.Rd | 3 man/stri_locate.Rd | 178 +++-- man/stri_locate_boundaries.Rd | 61 - man/stri_match.Rd | 13 man/stri_numbytes.Rd | 9 man/stri_pad.Rd | 20 man/stri_replace.Rd | 5 man/stri_replace_rstr.Rd |only man/stri_sprintf.Rd |only man/stri_sub.Rd | 64 + man/stri_sub_all.Rd | 64 + man/stri_subset.Rd | 35 - man/stri_trans_casemap.Rd | 4 man/stri_trans_general.Rd | 33 man/stri_trim.Rd | 38 - man/stri_width.Rd | 5 man/stri_wrap.Rd | 11 src/icu55/unicode/ucol.h | 4 src/icu55/unicode/uidna.h | 4 src/stri_TODO_justify.cpp | 4 src/stri_TODO_splitpos.cpp | 6 src/stri_TODO_uchar.cpp | 2 src/stri_brkiter.cpp | 2 src/stri_brkiter.h | 2 src/stri_bytesearch_matcher.h | 2 src/stri_collator.cpp | 2 src/stri_common.cpp | 6 src/stri_compare.cpp | 12 src/stri_container_base.h | 4 src/stri_container_charclass.h | 11 src/stri_container_double.h | 15 src/stri_container_integer.h | 15 src/stri_container_listraw.h | 1 src/stri_container_regex.cpp | 237 ++++++ src/stri_container_regex.h | 12 src/stri_container_utf16.cpp | 20 src/stri_container_utf16.h | 6 src/stri_container_utf8.cpp | 5 src/stri_container_utf8.h | 26 src/stri_cpp.txt | 1 src/stri_encoding_conversion.cpp | 20 src/stri_encoding_detection.cpp | 8 src/stri_encoding_management.cpp | 2 src/stri_escape.cpp | 17 src/stri_exception.cpp | 14 src/stri_exception.h | 143 ++-- src/stri_exports.h | 332 ++++++--- src/stri_external.h | 2 src/stri_intvec.h | 2 src/stri_join.cpp | 40 - src/stri_length.cpp | 211 ++++-- src/stri_messages.h | 119 ++- src/stri_pad.cpp | 14 src/stri_prepare_arg.cpp | 1078 +++++++++++++++++++++---------- src/stri_random.cpp | 13 src/stri_reverse.cpp | 2 src/stri_search_boundaries_count.cpp | 2 src/stri_search_boundaries_extract.cpp | 6 src/stri_search_boundaries_locate.cpp | 75 +- src/stri_search_boundaries_split.cpp | 8 src/stri_search_class_count.cpp | 4 src/stri_search_class_detect.cpp | 4 src/stri_search_class_extract.cpp | 10 src/stri_search_class_locate.cpp | 52 + src/stri_search_class_replace.cpp | 18 src/stri_search_class_split.cpp | 12 src/stri_search_class_startsendswith.cpp | 12 src/stri_search_class_subset.cpp | 91 +- src/stri_search_class_trim.cpp | 33 src/stri_search_coll_count.cpp | 4 src/stri_search_coll_detect.cpp | 4 src/stri_search_coll_extract.cpp | 10 src/stri_search_coll_locate.cpp | 69 + src/stri_search_coll_replace.cpp | 12 src/stri_search_coll_split.cpp | 12 src/stri_search_coll_startsendswith.cpp | 12 src/stri_search_coll_subset.cpp | 99 +- src/stri_search_common.cpp | 24 src/stri_search_fixed_count.cpp | 4 src/stri_search_fixed_detect.cpp | 6 src/stri_search_fixed_extract.cpp | 10 src/stri_search_fixed_locate.cpp | 71 +- src/stri_search_fixed_replace.cpp | 28 src/stri_search_fixed_split.cpp | 12 src/stri_search_fixed_startsendswith.cpp | 12 src/stri_search_fixed_subset.cpp | 95 +- src/stri_search_in.cpp | 18 src/stri_search_other_split.cpp | 8 src/stri_search_regex_count.cpp | 4 src/stri_search_regex_detect.cpp | 4 src/stri_search_regex_extract.cpp | 10 src/stri_search_regex_locate.cpp | 380 ++++++++-- src/stri_search_regex_match.cpp | 59 + src/stri_search_regex_replace.cpp | 120 +++ src/stri_search_regex_split.cpp | 12 src/stri_search_regex_subset.cpp | 91 +- src/stri_sort.cpp | 12 src/stri_sprintf.cpp |only src/stri_stats.cpp | 4 src/stri_string8.h | 34 src/stri_string8buf.h | 21 src/stri_stringi.cpp | 69 - src/stri_stringi.h | 85 +- src/stri_sub.cpp | 231 ++++-- src/stri_test.cpp | 8 src/stri_time_calendar.cpp | 90 +- src/stri_time_format.cpp | 422 ++++++++---- src/stri_time_zone.cpp | 4 src/stri_trans_casemap.cpp | 4 src/stri_trans_normalization.cpp | 4 src/stri_trans_other.cpp | 10 src/stri_trans_transliterate.cpp | 50 + src/stri_ucnv.h | 3 src/stri_utils.cpp | 13 src/stri_wrap.cpp | 20 153 files changed, 5002 insertions(+), 2439 deletions(-)
Title: Interface to 'MLflow'
Description: R interface to 'MLflow', open source platform for
the complete machine learning life cycle, see <https://mlflow.org/>.
This package supports installing 'MLflow', tracking experiments,
creating and running projects, and saving and serving models.
Author: Matei Zaharia [aut, cre],
Javier Luraschi [aut],
Kevin Kuo [aut] (<https://orcid.org/0000-0001-7803-7901>),
RStudio [cph]
Maintainer: Matei Zaharia <matei@databricks.com>
Diff between mlflow versions 1.18.0 dated 2021-06-18 and 1.19.0 dated 2021-07-14
DESCRIPTION | 12 ++++++------ MD5 | 10 +++++++--- NAMESPACE | 2 ++ R/model-registry.R |only R/tracking-rest.R | 9 +++++++++ man/mlflow_create_registered_model.Rd |only man/mlflow_delete_registered_model.Rd |only tests/testthat/test-model-registry.R |only 8 files changed, 24 insertions(+), 9 deletions(-)
Title: Generalized Random Forests
Description: A pluggable package for forest-based statistical estimation and inference.
GRF currently provides methods for non-parametric least-squares regression,
quantile regression, survival regression and treatment effect estimation (optionally using instrumental
variables), with support for missing values.
Author: Julie Tibshirani [aut, cre],
Susan Athey [aut],
Rina Friedberg [ctb],
Vitor Hadad [ctb],
David Hirshberg [ctb],
Luke Miner [ctb],
Erik Sverdrup [aut],
Stefan Wager [aut],
Marvin Wright [ctb]
Maintainer: Julie Tibshirani <jtibs@cs.stanford.edu>
Diff between grf versions 2.0.1 dated 2021-07-06 and 2.0.2 dated 2021-07-14
DESCRIPTION | 6 +++--- MD5 | 4 ++-- tests/testthat/test_cran_smoke_test.R | 31 +------------------------------ 3 files changed, 6 insertions(+), 35 deletions(-)
Title: Import and Handling for Plain and Formatted Text Files
Description: Functions for importing and handling text files and formatted text
files with additional meta-data, such including '.csv', '.tab', '.json', '.xml',
'.html', '.pdf', '.doc', '.docx', '.rtf', '.xls', '.xlsx', and others.
Author: Kenneth Benoit [aut, cre, cph],
Adam Obeng [aut],
Kohei Watanabe [ctb],
Akitaka Matsuo [ctb],
Paul Nulty [ctb],
Stefan Müller [ctb]
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>
Diff between readtext versions 0.80 dated 2020-09-22 and 0.81 dated 2021-07-14
DESCRIPTION | 10 MD5 | 36 - NEWS.md | 5 R/data.R | 4 R/encoding.R | 12 R/readtext-methods.R | 2 R/readtext-package.R | 4 R/readtext.R | 82 ++-- R/readtext_options.R | 20 - R/utils.R | 26 - build/vignette.rds |binary inst/doc/readtext_vignette.html | 778 +++++++++++++--------------------------- man/cache_remote.Rd | 8 man/data_files_encodedtexts.Rd | 8 man/encoding.Rd | 8 man/get_nexis_html.Rd | 8 man/readtext-package.Rd | 20 - man/readtext.Rd | 88 ++-- man/readtext_options.Rd | 10 19 files changed, 442 insertions(+), 687 deletions(-)
Title: Utilities for the Forest Research Institute of the State
Baden-Wuerttemberg
Description: Miscellaneous utilities, tools and helper
functions for finding and searching files on disk, searching for and
removing R objects from the workspace.
These are utilities for packages
<https://CRAN.R-project.org/package=cleanr>,
<https://CRAN.R-project.org/package=document>,
<https://CRAN.R-project.org/package=fakemake>,
<https://CRAN.R-project.org/package=packager> and
<https://CRAN.R-project.org/package=rasciidoc>.
Does not import or depend on any third party package, but on core R
only (i.e. it may depend on packages with priority 'base').
Author: Andreas Dominik Cullmann [aut, cre]
Maintainer: Andreas Dominik Cullmann <fvafrcu@mailbox.org>
Diff between fritools versions 2.0.0 dated 2021-05-31 and 2.1.0 dated 2021-07-14
DESCRIPTION | 10 - MD5 | 189 +++++++++++----------- NAMESPACE | 5 NEWS.md | 9 + R/batch.R | 36 ++-- R/boolean.R | 24 +- R/call.R | 135 +++++++-------- R/compare_vectors.R | 5 R/convert_umlauts_to_ascii.R |only R/convert_umlauts_to_tex.R | 26 ++- R/file_modified_last.R |only R/find_files.R | 10 - R/get_package_version.R | 7 R/get_unique_string.R | 1 R/golden_ratio.R | 5 R/installed.R | 13 + R/is_cran.R |only R/is_of_length_zero.R | 1 R/is_r_cmd_check.R | 4 R/is_success.R | 10 - R/is_version_sufficient.R | 3 R/is_windows.R | 5 R/load_internal_functions.R | 9 - R/memory_hogs.R | 2 R/options.R | 11 - R/paths.R | 24 ++ R/search_files.R | 16 + R/search_rows.R | 12 - R/split_code_file.R | 4 R/strip_off_attributes.R | 1 R/subsets.R | 4 R/tapply.R | 65 +++---- R/test_helpers.R | 34 ++- R/touch.R | 10 - R/weighted_variance.R | 13 - R/wipe_clean.R | 2 R/with_dir.R | 1 inst/NEWS.rd | 11 + inst/WORDLIST | 3 inst/runit_tests/runit-convert_umlauts_to_ascii.R |only inst/runit_tests/runit-convert_umlauts_to_tex.R | 2 inst/runit_tests/runit-file_modified_last.R |only inst/runit_tests/runit-importing.R | 3 inst/runit_tests/runit-is_cran.R |only inst/runit_tests/runit-is_success.R |only inst/runit_tests/runit-paths.R |only inst/runit_tests/runit-search_files.R | 3 inst/runit_tests/runit-search_rows.R | 32 +-- inst/runit_tests/runit-tapply.R | 23 +- inst/runit_tests/runit-touch.R | 3 inst/runit_tests/runit-weighted_variance.R | 4 man/call_conditionally.Rd | 4 man/call_safe.Rd | 5 man/compare_vectors.Rd | 13 + man/convert_umlauts_to_ascii.Rd |only man/convert_umlauts_to_tex.Rd | 12 + man/file_modified_last.Rd |only man/find_files.Rd | 24 ++ man/get_boolean_envvar.Rd | 17 + man/get_options.Rd | 4 man/get_package_version.Rd | 17 + man/get_r_cmd_batch_script_path.Rd | 14 + man/get_rscript_script_path.Rd | 14 + man/get_run_r_tests.Rd | 33 +++ man/get_script_name.Rd | 15 + man/get_script_path.Rd | 12 + man/get_unique_string.Rd | 10 + man/golden_ratio.Rd | 12 + man/index_groups.Rd | 8 man/is_batch.Rd | 26 ++- man/is_cran.Rd |only man/is_false.Rd | 21 +- man/is_force.Rd | 25 ++ man/is_installed.Rd | 32 +++ man/is_not_false.Rd | 21 +- man/is_null_or_true.Rd | 34 ++- man/is_of_length_zero.Rd | 19 ++ man/is_r_cmd_check.Rd | 32 +++ man/is_r_package_installed.Rd | 43 ++++- man/is_running_on_fvafrcu_machines.Rd | 31 +++ man/is_running_on_gitlab_com.Rd | 27 ++- man/is_success.Rd | 35 +++- man/is_version_sufficient.Rd | 30 +++ man/is_windows.Rd | 33 +++ man/load_internal_functions.Rd | 17 + man/memory_hogs.Rd | 7 man/paths.Rd | 15 + man/run_r_tests_for_known_hosts.Rd | 11 - man/search_files.Rd | 19 +- man/search_rows.Rd | 10 - man/set_options.Rd | 7 man/set_run_r_tests.Rd | 11 - man/split_code_file.Rd | 13 + man/strip_off_attributes.Rd | 6 man/subset_sizes.Rd | 5 man/summary.filesearch.Rd | 8 man/tapply.Rd | 24 +- man/touch.Rd | 15 + man/weighted_variance.Rd | 14 + man/wipe_clean.Rd | 7 man/with_dir.Rd | 10 + 101 files changed, 1191 insertions(+), 421 deletions(-)
Title: Compositional Data Analysis
Description: Provides functions for the consistent analysis of compositional
data (e.g. portions of substances) and positive numbers (e.g. concentrations)
in the way proposed by J. Aitchison and V. Pawlowsky-Glahn.
Author: K. Gerald van den Boogaart <boogaart@hzdr.de>,
Raimon Tolosana-Delgado, Matevz Bren
Maintainer: K. Gerald van den Boogaart <support@boogaart.de>
Diff between compositions versions 2.0-1 dated 2021-01-08 and 2.0-2 dated 2021-07-14
ChangeLog | 48 +++++++++++++ DESCRIPTION | 8 +- MD5 | 33 ++++----- NAMESPACE | 1 R/FunctionOutliers.R | 20 +++++ R/Geostat.R | 9 +- R/compositions.R | 31 ++++++-- R/tricks.R | 31 ++++++-- R/zzz.R | 9 +- build/partial.rdb |binary inst/doc/UsingCompositions.pdf |binary inst/doc/compositions_v2.html | 150 ++++++++++++++++++++--------------------- man/backtransform.Rd | 2 man/ellipses.Rd | 1 man/kingtetrahedron.Rd | 11 +-- man/logratioVariogram.Rd | 9 +- man/pwlr.Rd | 2 man/wrapped_functions.Rd |only 18 files changed, 239 insertions(+), 126 deletions(-)
Title: Computational Methods for Numerical Analysis
Description: Provides the source and examples for James P. Howard, II,
"Computational Methods for Numerical Analysis with R,"
<https://jameshoward.us/cmna/>, a book on numerical
methods in R.
Author: James Howard [aut, cre] (<https://orcid.org/0000-0003-4530-1547>)
Maintainer: James Howard <jh@jameshoward.us>
Diff between cmna versions 1.0.3 dated 2020-07-07 and 1.0.5 dated 2021-07-14
DESCRIPTION | 15 +++++++-------- MD5 | 8 ++++---- README.md | 10 ++++++---- inst/CITATION | 2 +- man/cmna-package.Rd | 2 +- 5 files changed, 19 insertions(+), 18 deletions(-)
Title: General Utility Functions for Analysis of Clinical Data
Description: Utility functions to facilitate the import,
the reporting and analysis of clinical data.
Example datasets in 'SDTM' and 'ADaM' format, containing a subset of patients/domains
from the 'CDISC Pilot 01 study' are also available as R datasets to demonstrate
the package functionalities.
Author: Laure Cougnaud [aut],
Michela Pasetto [aut, cre],
Open Analytics [cph]
Maintainer: Michela Pasetto <michela.pasetto@openanalytics.eu>
Diff between clinUtils versions 0.0.1 dated 2021-06-08 and 0.0.2 dated 2021-07-14
DESCRIPTION | 20 - MD5 | 16 inst/NEWS | 3 inst/doc/clinUtils-vignette.R | 8 inst/doc/clinUtils-vignette.Rmd | 18 - inst/doc/clinUtils-vignette.html | 79 ++-- tests/testthat/test_getClinDT.R | 553 +++++++++++++++++++------------ tests/testthat/test_knitPrintListPlots.R | 89 ++-- vignettes/clinUtils-vignette.Rmd | 18 - 9 files changed, 486 insertions(+), 318 deletions(-)
Title: Easily Extract Data from 'StatsWales'
Description: Download data from 'StatsWales' into R. Removes the need for the user to
write their own loops when parsing data from the 'StatsWales' API. Provides functions
for datasets (<http://open.statswales.gov.wales/en-gb/dataset>) and metadata
(<http://open.statswales.gov.wales/en-gb/discover/metadata>) endpoints.
Author: Jamie Ralph [aut, cre]
Maintainer: Jamie Ralph <jamesryanralph@outlook.com>
Diff between statswalesr versions 0.1.3 dated 2021-05-12 and 0.1.4 dated 2021-07-14
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ tests/testthat/test-get-data.R | 4 ++-- tests/testthat/test-search.R | 4 ++-- 5 files changed, 15 insertions(+), 11 deletions(-)
Title: Sound Analysis and Synthesis
Description: Functions for analysing, manipulating, displaying, editing and synthesizing time waves (particularly sound). This package processes time analysis (oscillograms and envelopes), spectral content, resonance quality factor, entropy, cross correlation and autocorrelation, zero-crossing, dominant frequency, analytic signal, frequency coherence, 2D and 3D spectrograms and many other analyses. See Sueur et al. (2008) <doi:10.1080/09524622.2008.9753600> and Sueur (2018) <doi:10.1007/978-3-319-77647-7>.
Author: Jerome Sueur <sueur@mnhn.fr> [cre, au], Thierry Aubin [au],
Caroline Simonis [au], Laurent Lellouch [main ctrb],
Pierre Aumond [ctrb],
Ethan C. Brown [ctrb], Guillaume Corbeau [ctrb], Marion Depraetere [ctrb],
Camille Desjonqueres [ctrb], Francois Fabianek [ctrb],
Amandine Gasc [ctrb], Eric Kasten [ctrb], Stefanie LaZerte [ctrb],
Jonathan Lees [ctrb], Jean Marchal [ctrb], Andre Mikulec [ctrb],
Sandrine Pavoine [ctrb], David Pinaud [ctrb], Alicia Stotz [ctrb],
Luis J. Villanueva-Rivera [ctrb], Zev Ross [ctrb],
Carl G. Witthoft [ctrb], Hristo Zhivomirov [ctrb].
Maintainer: Jerome Sueur <sueur@mnhn.fr>
Diff between seewave versions 2.1.6 dated 2020-05-28 and 2.1.8 dated 2021-07-14
DESCRIPTION | 15 ++-- MD5 | 35 +++++----- NEWS | 15 ++++ R/seewave.r | 140 ++++++++++++++++++++++++++++++++---------- build/vignette.rds |binary inst/CITATION | 2 inst/doc/seewave_IO.pdf |binary inst/doc/seewave_analysis.pdf |binary man/ACI.Rd | 2 man/TFSD.Rd |only man/dBweight.Rd | 2 man/read.audacity.Rd | 2 man/sddB.Rd | 2 man/seewave.package.Rd | 21 +++--- man/songmeter.Rd | 2 man/songmeterdiag.Rd | 2 man/spectro.Rd | 8 +- man/write.audacity.Rd | 2 man/zcr.Rd | 2 19 files changed, 173 insertions(+), 79 deletions(-)
Title: Finite Mixture Modeling, Clustering & Classification
Description: Random univariate and multivariate finite mixture model generation, estimation, clustering, latent class analysis and classification. Variables can be continuous, discrete, independent or dependent and may follow normal, lognormal, Weibull, gamma, Gumbel, binomial, Poisson, Dirac or circular von Mises parametric families.
Author: Marko Nagode [aut, cre] (<https://orcid.org/0000-0003-0637-3812>),
Branislav Panic [ctb] (<https://orcid.org/0000-0001-8349-8550>),
Jernej Klemenc [ctb] (<https://orcid.org/0000-0002-6778-6728>),
Simon Oman [ctb] (<https://orcid.org/0000-0001-8213-0818>)
Maintainer: Marko Nagode <marko.nagode@fs.uni-lj.si>
Diff between rebmix versions 2.12.0 dated 2020-06-08 and 2.13.0 dated 2021-07-14
DESCRIPTION | 9 MD5 | 159 +++--- NAMESPACE | 5 R/AllClasses.R | 31 + R/AllGenerics.R | 1 R/RCLRMIX.R | 2 R/RCLSMIX.R | 4 R/REBMIX.R | 6 R/RNGMIX.R | 2 R/boot.REBMIX.R | 8 R/dfmix.R | 11 R/dfmvnorm.xy.R | 19 R/pfmix.R | 3 R/pfmvnorm.xy.R | 3 R/plot.RCLRMIX.R | 4 R/plot.RCLSMIX.R | 4 R/plot.REBMIX.R | 144 +++-- R/plot.RNGMIX.R | 4 R/zaccessors.R | 28 + build/partial.rdb |only build/vignette.rds |binary data/adult.rda |binary data/bearings.rda |only data/datalist |only data/galaxy.rda |binary data/iris.rda |binary data/sensorless.drive.rda |only data/steel.plates.rda |only data/truck.rda |binary data/weibull.rda |binary data/weibullnormal.rda |binary data/wine.rda |binary demo/00Index | 1 demo/rebmix.fault.detection.R |only inst/CITATION | 44 + inst/NEWS.Rd | 8 inst/doc/rebmix.R | 418 ++++++++++------- inst/doc/rebmix.Rnw | 421 +++++++++++------ inst/doc/rebmix.pdf |binary man/AIC.Rd | 2 man/AWE.Rd | 3 man/BFSMIX.Rd | 2 man/EM.Control-class.Rd | 16 man/ICL.Rd | 2 man/ICLBIC.Rd | 2 man/PRD.Rd | 6 man/RCLRMIX-class.Rd | 5 man/RCLRMIX.Rd | 6 man/REBMIX.Rd | 22 man/REBMIX.boot.Rd | 15 man/REBMIX.plot.Rd | 12 man/RNGMIX.Rd | 4 man/RNGMIX.Theta-class.Rd | 2 man/adult.Rd | 4 man/bearings.Rd |only man/bins.Rd | 13 man/demix.Rd | 16 man/dfmix.Rd | 9 man/iris.Rd | 8 man/optbins.Rd | 4 man/pemix.Rd | 27 - man/pfmix.Rd | 6 man/rebmix-internal.Rd | 3 man/sensorless.drive.Rd |only man/steel.plates.Rd |only man/weibull.Rd | 2 man/wine.Rd | 6 src/Rrebmix.cpp | 27 - src/Rrebmvnorm.cpp | 70 ++ src/base.cpp | 27 - src/base.h | 59 +- src/emf.cpp | 721 +++++++++++++++++++++++++++-- src/emf.h | 12 src/init.c | 31 - src/rebmix.cpp | 18 src/rebmixf.cpp | 1031 +++++++++++++++++++++++++----------------- src/rebmixf.h | 20 src/rebmvnormf.cpp | 12 src/rebmvnormf.h | 3 src/rngmixf.cpp | 16 src/rngmixf.h | 5 src/rngmvnormf.cpp | 11 src/rngmvnormf.h | 3 vignettes/rebmix.Rnw | 421 +++++++++++------ vignettes/rebmix.bib | 21 85 files changed, 2740 insertions(+), 1304 deletions(-)
Title: Tools for Working with Posterior Distributions
Description: Provides useful tools for both users and developers of packages
for fitting Bayesian models or working with output from Bayesian models.
The primary goals of the package are to:
(a) Efficiently convert between many different useful formats of
draws (samples) from posterior or prior distributions.
(b) Provide consistent methods for operations commonly performed on draws,
for example, subsetting, binding, or mutating draws.
(c) Provide various summaries of draws in convenient formats.
(d) Provide lightweight implementations of state of the art posterior
inference diagnostics. References: Vehtari et al. (2021)
<doi:10.1214/20-BA1221>.
Author: Paul-Christian Bürkner [aut, cre],
Jonah Gabry [aut],
Matthew Kay [aut],
Aki Vehtari [aut],
Måns Magnusson [ctb],
Rok Češnovar [ctb],
Ben Lambert [ctb],
Ozan Adıgüzel [ctb],
Jacob Socolar [ctb]
Maintainer: Paul-Christian Bürkner <paul.buerkner@gmail.com>
Diff between posterior versions 1.0.0 dated 2021-07-13 and 1.0.1 dated 2021-07-14
DESCRIPTION | 8 MD5 | 40 +-- NEWS.md | 5 R/as_draws_rvars.R | 2 R/draws-index.R | 8 R/merge_chains.R | 2 R/rvar-.R | 16 - R/rvar-cast.R | 31 +- R/rvar-print.R | 466 ++++++++++++++++++------------------- R/subset_draws.R | 2 README.md | 79 ++---- inst/doc/posterior.R | 2 inst/doc/posterior.Rmd | 5 inst/doc/posterior.html | 104 ++++---- inst/doc/rvar.html | 4 tests/testthat/test-rvar-.R | 6 tests/testthat/test-rvar-math.R | 102 ++++---- tests/testthat/test-rvar-rfun.R | 4 tests/testthat/test-rvar-slice.R | 134 +++++----- tests/testthat/test-subset_draws.R | 2 vignettes/posterior.Rmd | 5 21 files changed, 530 insertions(+), 497 deletions(-)
Title: ODE Generation and Integration
Description: Generate systems of ordinary differential equations
(ODE) and integrate them, using a domain specific language
(DSL). The DSL uses R's syntax, but compiles to C in order to
efficiently solve the system. A solver is not provided, but
instead interfaces to the packages 'deSolve' and 'dde' are
generated. With these, while solving the differential equations,
no allocations are done and the calculations remain entirely in
compiled code. Alternatively, a model can be transpiled to R for
use in contexts where a C compiler is not present. After
compilation, models can be inspected to return information about
parameters and outputs, or intermediate values after calculations.
'odin' is not targeted at any particular domain and is suitable
for any system that can be expressed primarily as mathematical
expressions. Additional support is provided for working with
delays (delay differential equations, DDE), using interpolated
functions during interpolation, and for integrating quantities
that represent arrays.
Author: Rich FitzJohn [aut, cre],
Thibaut Jombart [ctb],
Imperial College of Science, Technology and Medicine [cph]
Maintainer: Rich FitzJohn <rich.fitzjohn@gmail.com>
Diff between odin versions 1.2.0 dated 2021-07-07 and 1.2.1 dated 2021-07-14
DESCRIPTION | 6 MD5 | 28 +-- build/vignette.rds |binary inst/doc/discrete.R | 2 inst/doc/discrete.Rmd | 6 inst/doc/discrete.html | 40 +--- inst/doc/functions.Rmd | 4 inst/doc/functions.html | 8 inst/doc/odin.R | 2 inst/doc/odin.Rmd | 6 inst/doc/odin.html | 333 ++++++++++++++++++------------------- tests/testthat/test-run-examples.R | 11 + vignettes/discrete.Rmd | 6 vignettes/functions.Rmd | 4 vignettes/odin.Rmd | 6 15 files changed, 233 insertions(+), 229 deletions(-)
Title: The Complete R6 Probability Distributions Interface
Description: An R6 object oriented distributions package. Unified interface for 42 probability distributions and 11 kernels including functionality for multiple scientific types. Additionally functionality for composite distributions and numerical imputation. Design patterns including wrappers and decorators are described in Gamma et al. (1994, ISBN:0-201-63361-2). For quick reference of probability distributions including d/p/q/r functions and results we refer to McLaughlin, M. P. (2001). Additionally Devroye (1986, ISBN:0-387-96305-7) for sampling the Dirichlet distribution, Gentle (2009) <doi:10.1007/978-0-387-98144-4> for sampling the Multivariate Normal distribution and Michael et al. (1976) <doi:10.2307/2683801> for sampling the Wald distribution.
Author: Raphael Sonabend [aut, cre] (<https://orcid.org/0000-0001-9225-4654>),
Franz Kiraly [aut],
Peter Ruckdeschel [ctb] (Author of distr),
Matthias Kohl [ctb] (Author of distr),
Nurul Ain Toha [ctb],
Shen Chen [ctb],
Jordan Deenichin [ctb],
Chengyang Gao [ctb],
Chloe Zhaoyuan Gu [ctb],
Yunjie He [ctb],
Xiaowen Huang [ctb],
Shuhan Liu [ctb],
Runlong Yu [ctb],
Chijing Zeng [ctb],
Qian Zhou [ctb]
Maintainer: Raphael Sonabend <raphaelsonabend@gmail.com>
Diff between distr6 versions 1.5.2 dated 2021-04-17 and 1.5.4 dated 2021-07-14
distr6-1.5.2/distr6/tests/testthat/Rplots.pdf |only distr6-1.5.4/distr6/DESCRIPTION | 32 distr6-1.5.4/distr6/MD5 | 40 distr6-1.5.4/distr6/NAMESPACE | 2 distr6-1.5.4/distr6/NEWS.md | 9 distr6-1.5.4/distr6/R/Distribution.R | 6 distr6-1.5.4/distr6/R/ParameterSet.R | 2 distr6-1.5.4/distr6/R/ParameterSetCollection.R | 2 distr6-1.5.4/distr6/R/Wrapper_VectorDistribution.R | 4 distr6-1.5.4/distr6/R/as.Distribution.R |only distr6-1.5.4/distr6/R/helpers.R | 6 distr6-1.5.4/distr6/R/helpers_pdq.R | 2 distr6-1.5.4/distr6/R/lines.R | 6 distr6-1.5.4/distr6/R/plot_distribution.R | 8 distr6-1.5.4/distr6/R/simulateEmpiricalDistribution.R | 2 distr6-1.5.4/distr6/R/sugar.R | 6 distr6-1.5.4/distr6/build/vignette.rds |binary distr6-1.5.4/distr6/inst/doc/distr6.html | 695 ++++++--------- distr6-1.5.4/distr6/man/as.Distribution.Rd |only distr6-1.5.4/distr6/man/distr6-package.Rd | 2 distr6-1.5.4/distr6/man/dstr.Rd | 2 distr6-1.5.4/distr6/tests/testthat/helpers.R | 9 distr6-1.5.4/distr6/tests/testthat/test_asDistribution.R |only 23 files changed, 377 insertions(+), 458 deletions(-)
Title: k-Prototypes Clustering for Mixed Variable-Type Data
Description: Functions to perform k-prototypes partitioning clustering for
mixed variable-type data according to Z.Huang (1998): Extensions to the k-Means
Algorithm for Clustering Large Data Sets with Categorical Variables, Data Mining
and Knowledge Discovery 2, 283-304, <DOI:10.1023/A:1009769707641>.
Author: Gero Szepannek [aut, cre], Rabea Aschenbruck [aut]
Maintainer: Gero Szepannek <gero.szepannek@web.de>
Diff between clustMixType versions 0.2-11 dated 2021-03-10 and 0.2-14 dated 2021-07-14
DESCRIPTION | 8 +- MD5 | 21 ++++--- NEWS | 3 + R/clustervalidation.R | 4 - R/kprototypes.R | 12 +++- README.md |only build/partial.rdb |binary man/clprofiles.Rd | 128 +++++++++++++++++++++++------------------------ man/lambdaest.Rd | 116 +++++++++++++++++++++--------------------- man/predict.kproto.Rd | 110 ++++++++++++++++++++-------------------- man/summary.Rd | 114 ++++++++++++++++++++--------------------- man/validation_kproto.Rd | 4 - 12 files changed, 266 insertions(+), 254 deletions(-)
Title: Clinical Data Review Tool
Description: Creation of interactive tables, listings and figures ('TLFs')
and associated report for exploratory analysis of data in a clinical trial,
e.g. for clinical oversight activities.
Interactive figures include sunburst, treemap, scatterplot, line plot and
barplot of counts data.
Interactive tables include table of summary statistics
(as counts of adverse events, enrollment table) and listings.
Possibility to compare data (summary table or listing) across two data batches/sets.
A clinical data review report is created via study-specific configuration
files and template 'R Markdown' reports contained in the package.
Author: Laure Cougnaud [aut, cre],
Michela Pasetto [aut],
Lennart Tuijnder [aut],
Arne De Roeck [ctb],
Open Analytics [cph]
Maintainer: Laure Cougnaud <laure.cougnaud@openanalytics.eu>
Diff between clinDataReview versions 1.0.0 dated 2021-06-30 and 1.1.0 dated 2021-07-14
DESCRIPTION | 11 MD5 | 89 + NAMESPACE | 1 R/miscellaneous.R | 2 R/plots-barplotClinData.R | 10 R/plots-boxplotClinData.R |only R/plots-countClinData.R | 8 R/plots-utility-facets.R | 13 R/plots-utility-formatToHierarchicalData.R | 65 - R/plots-utility-getPlotTableVars.R | 26 inst/NEWS | 9 inst/doc/clinDataReview-dataPreprocessing.html | 8 inst/doc/clinDataReview-dataVisualization.Rmd | 52 - inst/doc/clinDataReview-dataVisualization.html | 338 +++---- inst/doc/clinDataReview-reporting.html | 8 inst/doc/patientProfiles/subjectProfile-01-701-1148.pdf |binary inst/doc/patientProfiles/subjectProfile-01-701-1192.pdf |binary inst/doc/patientProfiles/subjectProfile-01-701-1211.pdf |binary inst/doc/patientProfiles/subjectProfile-01-704-1445.pdf |binary inst/doc/patientProfiles/subjectProfile-01-710-1083.pdf |binary inst/doc/patientProfiles/subjectProfile-01-718-1371.pdf |binary inst/doc/patientProfiles/subjectProfile-01-718-1427.pdf |binary inst/doc/patientProfiles/subjectProfile.log | 4 inst/examples/barplotClinData-example.R | 15 inst/examples/boxplotClinData-example.R |only inst/template/countsVisualizationTemplate.Rmd | 10 inst/template/listingTemplate.Rmd | 752 +++++++++------- inst/template/listingTemplate.json | 4 inst/template/plotTemplate.json | 2 inst/template/summaryTableTemplate.Rmd | 46 inst/template/summaryTableTemplate.json | 3 man/addFacetPanel.Rd |only man/barplotClinData.Rd | 20 man/boxplotClinData.Rd |only man/clinDataReview-templates.Rd | 5 man/formatToHierarchicalData.Rd | 25 man/getSizePlotClinData.Rd | 10 man/plotCountClinData.Rd | 1 man/sunburstClinData.Rd | 1 man/treemapClinData.Rd | 1 tests/testthat/test_barplotClinData.R | 37 tests/testthat/test_boxplotClinData.R |only tests/testthat/test_getPlotTableVars.R | 27 tests/testthat/test_miscellaneous.R | 35 tests/testthat/test_plotCountClinData.R | 44 tests/testthat/test_render_clinDataReviewReport.R | 8 tests/testthat/test_templates.R | 5 vignettes/clinDataReview-dataVisualization.Rmd | 52 - 48 files changed, 1104 insertions(+), 643 deletions(-)
More information about clinDataReview at CRAN
Permanent link
Title: A Fast Implementation of Random Forests
Description: A fast implementation of Random Forests, particularly suited for high
dimensional data. Ensembles of classification, regression, survival and
probability prediction trees are supported. Data from genome-wide association
studies can be analyzed efficiently. In addition to data frames, datasets of
class 'gwaa.data' (R package 'GenABEL') and 'dgCMatrix' (R package 'Matrix')
can be directly analyzed.
Author: Marvin N. Wright [aut, cre], Stefan Wager [ctb], Philipp Probst [ctb]
Maintainer: Marvin N. Wright <cran@wrig.de>
Diff between ranger versions 0.12.1 dated 2020-01-10 and 0.13.1 dated 2021-07-14
DESCRIPTION | 12 +-- MD5 | 75 ++++++++++++------------ NEWS | 5 + R/RcppExports.R | 4 + R/csrf.R | 12 +++ R/formula.R | 6 + R/holdoutRF.R | 2 R/importance.R | 2 R/predict.R | 10 +-- R/ranger.R | 68 ++++++++++----------- R/treeInfo.R | 4 - R/utility.R | 2 build |only man/csrf.Rd | 13 +++- man/holdoutRF.Rd | 2 man/importance_pvalues.Rd | 2 man/predict.ranger.Rd | 6 - man/predict.ranger.forest.Rd | 4 - man/ranger.Rd | 32 +++++----- src/Forest.cpp | 115 ++++++++++++++----------------------- src/Forest.h | 3 src/ForestProbability.cpp | 20 +++--- src/ForestRegression.cpp | 18 ++--- src/ForestSurvival.cpp | 6 - src/RcppExports.cpp | 14 ++++ src/Tree.cpp | 68 ++++++++++----------- src/Tree.h | 7 -- src/TreeClassification.cpp | 9 +- src/TreeProbability.cpp | 1 src/TreeRegression.cpp | 36 +++++------ src/TreeSurvival.cpp | 21 ++++++ src/utility.cpp | 20 ------ src/utility.h | 11 --- src/utilityRcpp.cpp | 52 ++++++++++++++++ tests/testthat/test_formula.R | 24 +++++++ tests/testthat/test_ranger.R | 21 ++++-- tests/testthat/test_splitweights.R | 21 ++++++ tests/testthat/test_treeInfo.R | 17 +++++ tests/testthat/test_unordered.R | 8 ++ 39 files changed, 447 insertions(+), 306 deletions(-)
Title: Grammar Extensions to 'ggplot2'
Description: Extensions to 'ggplot2' respecting the grammar of graphics
paradigm. Geomas: geom_table(), geom_plot() and geom_grob() add insets to
plots using native data coordinates, while geom_table_npc(), geom_plot_npc()
and geom_grob_npc() do the same using "npc" coordinates through new
aesthetics "npcx" and "npcy". Statistics: select observations based on 2D
density. Positions: radial nudging away from a center point and nudging away
from a line or curve.
Author: Pedro J. Aphalo [aut, cre] (<https://orcid.org/0000-0003-3385-972X>),
Kamil Slowikowski [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between ggpp versions 0.4.0 dated 2021-05-28 and 0.4.1 dated 2021-07-14
DESCRIPTION | 18 +-- MD5 | 26 ++-- NEWS.md | 10 + R/geom-quadrant-lines.R | 161 +++++++++++++++------------- R/geom-table.R | 8 + R/geom-text-linked.r | 40 +++++-- R/position-nudge-line.R | 220 ++++++++++++++++++++------------------- README.md | 19 ++- inst/doc/grammar-extensions.R | 6 - inst/doc/grammar-extensions.Rmd | 215 ++++++++++++++++++++------------------ inst/doc/grammar-extensions.html | 74 ++++++------- man/ggpp-ggproto.Rd | 1 man/ttheme_gtdefault.Rd | 2 vignettes/grammar-extensions.Rmd | 215 ++++++++++++++++++++------------------ 14 files changed, 551 insertions(+), 464 deletions(-)
Title: Utilities for Scoring and Assessing Predictions
Description: Combines a collection of metrics and proper scoring rules
(Tilmann Gneiting & Adrian E Raftery (2007)
<doi:10.1198/016214506000001437>) with an easy to
use wrapper that can be used to automatically evaluate predictions.
Apart from proper scoring rules functions are provided to assess bias,
sharpness and calibration (Sebastian Funk, Anton Camacho, Adam J. Kucharski,
Rachel Lowe, Rosalind M. Eggo, W. John Edmunds (2019)
<doi:10.1371/journal.pcbi.1006785>) of forecasts.
Several types of predictions can be evaluated:
probabilistic forecasts (generally
predictive samples generated by Markov Chain Monte Carlo procedures),
quantile forecasts or point forecasts. Observed values and predictions
can be either continuous, integer, or binary. Users can either choose
to apply these rules separately in a vector / matrix format that can
be flexibly used within other packages, or they can choose to do an
automatic evaluation of their forecasts. This is implemented with
'data.table' and provides a consistent and very efficient framework for
evaluating various types of predictions.
Author: Nikos Bosse [aut, cre] (<https://orcid.org/0000-0002-7750-5280>),
Sam Abbott [aut] (<https://orcid.org/0000-0001-8057-8037>),
Johannes Bracher [ctb] (<https://orcid.org/0000-0002-3777-1410>),
Joel Hellewell [ctb] (<https://orcid.org/0000-0003-2683-0849>),
Sophie Meakins [ctb],
James Munday [ctb],
Katharine Sherratt [ctb],
Sebastian Funk [aut]
Maintainer: Nikos Bosse <nikosbosse@gmail.com>
Diff between scoringutils versions 0.1.4 dated 2020-11-17 and 0.1.7 dated 2021-07-14
scoringutils-0.1.4/scoringutils/R/pivoting_functions.R |only scoringutils-0.1.4/scoringutils/data/quantile_example_data_long.rda |only scoringutils-0.1.4/scoringutils/data/quantile_example_data_plain.rda |only scoringutils-0.1.4/scoringutils/data/quantile_example_data_wide.rda |only scoringutils-0.1.4/scoringutils/man/ae_median.Rd |only scoringutils-0.1.4/scoringutils/man/figures/unnamed-chunk-2-1.png |only scoringutils-0.1.4/scoringutils/man/figures/unnamed-chunk-4-2.png |only scoringutils-0.1.4/scoringutils/man/figures/unnamed-chunk-8-1.png |only scoringutils-0.1.4/scoringutils/man/quantile_example_data_long.Rd |only scoringutils-0.1.4/scoringutils/man/quantile_example_data_plain.Rd |only scoringutils-0.1.4/scoringutils/man/quantile_example_data_wide.Rd |only scoringutils-0.1.7/scoringutils/DESCRIPTION | 14 scoringutils-0.1.7/scoringutils/MD5 | 179 +- scoringutils-0.1.7/scoringutils/NAMESPACE | 28 scoringutils-0.1.7/scoringutils/R/absolute_error.R |only scoringutils-0.1.7/scoringutils/R/bias.R | 6 scoringutils-0.1.7/scoringutils/R/brier_score.R | 5 scoringutils-0.1.7/scoringutils/R/data.R | 238 ++- scoringutils-0.1.7/scoringutils/R/eval_forecasts.R | 556 +++------ scoringutils-0.1.7/scoringutils/R/eval_forecasts_binary.R |only scoringutils-0.1.7/scoringutils/R/eval_forecasts_continuous_integer.R |only scoringutils-0.1.7/scoringutils/R/eval_forecasts_helper.R |only scoringutils-0.1.7/scoringutils/R/eval_forecasts_quantile.R |only scoringutils-0.1.7/scoringutils/R/interval_score.R | 29 scoringutils-0.1.7/scoringutils/R/metrics_point_forecasts.R | 37 scoringutils-0.1.7/scoringutils/R/pairwise-comparisons.R |only scoringutils-0.1.7/scoringutils/R/pit.R | 229 +++ scoringutils-0.1.7/scoringutils/R/plot.R | 616 +++++++--- scoringutils-0.1.7/scoringutils/R/scoringRules_wrappers.R | 2 scoringutils-0.1.7/scoringutils/R/scoringutils.R | 12 scoringutils-0.1.7/scoringutils/R/sharpness.R | 3 scoringutils-0.1.7/scoringutils/R/utils.R | 200 +++ scoringutils-0.1.7/scoringutils/R/utils_data_handling.R |only scoringutils-0.1.7/scoringutils/R/zzz.R |only scoringutils-0.1.7/scoringutils/build/vignette.rds |binary scoringutils-0.1.7/scoringutils/data/binary_example_data.rda |binary scoringutils-0.1.7/scoringutils/data/continuous_example_data.rda |binary scoringutils-0.1.7/scoringutils/data/example_quantile_forecasts_only.rda |only scoringutils-0.1.7/scoringutils/data/example_truth_data_only.rda |only scoringutils-0.1.7/scoringutils/data/integer_example_data.rda |binary scoringutils-0.1.7/scoringutils/data/quantile_example_data.rda |only scoringutils-0.1.7/scoringutils/data/range_example_data_long.rda |only scoringutils-0.1.7/scoringutils/data/range_example_data_semi_wide.rda |only scoringutils-0.1.7/scoringutils/data/range_example_data_wide.rda |only scoringutils-0.1.7/scoringutils/inst/CITATION |only scoringutils-0.1.7/scoringutils/inst/create_example_data.R |only scoringutils-0.1.7/scoringutils/inst/doc/scoringutils.R | 47 scoringutils-0.1.7/scoringutils/inst/doc/scoringutils.Rmd | 52 scoringutils-0.1.7/scoringutils/inst/doc/scoringutils.html | 600 ++++----- scoringutils-0.1.7/scoringutils/man/abs_error.Rd |only scoringutils-0.1.7/scoringutils/man/add_quantiles.Rd |only scoringutils-0.1.7/scoringutils/man/add_rel_skill_to_eval_forecasts.Rd |only scoringutils-0.1.7/scoringutils/man/add_sd.Rd |only scoringutils-0.1.7/scoringutils/man/ae_median_quantile.Rd |only scoringutils-0.1.7/scoringutils/man/ae_median_sample.Rd |only scoringutils-0.1.7/scoringutils/man/binary_example_data.Rd | 28 scoringutils-0.1.7/scoringutils/man/check_equal_length.Rd |only scoringutils-0.1.7/scoringutils/man/check_not_null.Rd |only scoringutils-0.1.7/scoringutils/man/compare_two_models.Rd |only scoringutils-0.1.7/scoringutils/man/continuous_example_data.Rd | 21 scoringutils-0.1.7/scoringutils/man/correlation_plot.Rd | 6 scoringutils-0.1.7/scoringutils/man/delete_columns.Rd |only scoringutils-0.1.7/scoringutils/man/eval_forecasts.Rd | 106 + scoringutils-0.1.7/scoringutils/man/eval_forecasts_binary.Rd |only scoringutils-0.1.7/scoringutils/man/eval_forecasts_sample.Rd |only scoringutils-0.1.7/scoringutils/man/example_quantile_forecasts_only.Rd |only scoringutils-0.1.7/scoringutils/man/example_truth_data_only.Rd |only scoringutils-0.1.7/scoringutils/man/extract_from_list.Rd |only scoringutils-0.1.7/scoringutils/man/figures/interval_score.png |only scoringutils-0.1.7/scoringutils/man/figures/unnamed-chunk-3-1.png |binary scoringutils-0.1.7/scoringutils/man/figures/unnamed-chunk-4-1.png |binary scoringutils-0.1.7/scoringutils/man/figures/unnamed-chunk-5-1.png |binary scoringutils-0.1.7/scoringutils/man/figures/unnamed-chunk-5-2.png |binary scoringutils-0.1.7/scoringutils/man/figures/unnamed-chunk-6-1.png |binary scoringutils-0.1.7/scoringutils/man/figures/unnamed-chunk-7-1.png |binary scoringutils-0.1.7/scoringutils/man/geom_mean_helper.Rd |only scoringutils-0.1.7/scoringutils/man/integer_example_data.Rd | 21 scoringutils-0.1.7/scoringutils/man/interval_coverage.Rd | 2 scoringutils-0.1.7/scoringutils/man/interval_score.Rd | 13 scoringutils-0.1.7/scoringutils/man/logs.Rd | 2 scoringutils-0.1.7/scoringutils/man/merge_pred_and_obs.Rd |only scoringutils-0.1.7/scoringutils/man/mse.Rd | 2 scoringutils-0.1.7/scoringutils/man/pairwise_comparison.Rd |only scoringutils-0.1.7/scoringutils/man/pairwise_comparison_one_group.Rd |only scoringutils-0.1.7/scoringutils/man/pit.Rd | 10 scoringutils-0.1.7/scoringutils/man/pit_df.Rd |only scoringutils-0.1.7/scoringutils/man/pit_df_fast.Rd |only scoringutils-0.1.7/scoringutils/man/plot_pairwise_comparison.Rd |only scoringutils-0.1.7/scoringutils/man/plot_predictions.Rd | 85 + scoringutils-0.1.7/scoringutils/man/quantile_coverage.Rd | 2 scoringutils-0.1.7/scoringutils/man/quantile_example_data.Rd |only scoringutils-0.1.7/scoringutils/man/quantile_to_long.Rd | 17 scoringutils-0.1.7/scoringutils/man/quantile_to_range.Rd | 24 scoringutils-0.1.7/scoringutils/man/quantile_to_range_long.Rd |only scoringutils-0.1.7/scoringutils/man/quantile_to_wide.Rd | 17 scoringutils-0.1.7/scoringutils/man/range_example_data_long.Rd |only scoringutils-0.1.7/scoringutils/man/range_example_data_semi_wide.Rd |only scoringutils-0.1.7/scoringutils/man/range_example_data_wide.Rd |only scoringutils-0.1.7/scoringutils/man/range_long_to_quantile.Rd |only scoringutils-0.1.7/scoringutils/man/range_long_to_wide.Rd |only scoringutils-0.1.7/scoringutils/man/range_plot.Rd | 43 scoringutils-0.1.7/scoringutils/man/range_to_quantile.Rd | 25 scoringutils-0.1.7/scoringutils/man/range_wide_to_long.Rd |only scoringutils-0.1.7/scoringutils/man/sample_to_quantile.Rd | 4 scoringutils-0.1.7/scoringutils/man/sample_to_range.Rd | 15 scoringutils-0.1.7/scoringutils/man/sample_to_range_long.Rd |only scoringutils-0.1.7/scoringutils/man/score_heatmap.Rd | 34 scoringutils-0.1.7/scoringutils/man/score_table.Rd | 22 scoringutils-0.1.7/scoringutils/man/scoringutils.Rd | 12 scoringutils-0.1.7/scoringutils/man/sharpness.Rd | 3 scoringutils-0.1.7/scoringutils/man/show_avail_forecasts.Rd |only scoringutils-0.1.7/scoringutils/man/update_list.Rd |only scoringutils-0.1.7/scoringutils/man/wis_components.Rd | 28 scoringutils-0.1.7/scoringutils/tests/testthat/test-absolute_error.R |only scoringutils-0.1.7/scoringutils/tests/testthat/test-bias.R | 45 scoringutils-0.1.7/scoringutils/tests/testthat/test-brier_score.R | 17 scoringutils-0.1.7/scoringutils/tests/testthat/test-eval_forecasts.R |only scoringutils-0.1.7/scoringutils/tests/testthat/test-interval_score.R |only scoringutils-0.1.7/scoringutils/tests/testthat/test-merge_pred_and_obs.R |only scoringutils-0.1.7/scoringutils/tests/testthat/test-pairwise_comparison.R |only scoringutils-0.1.7/scoringutils/tests/testthat/test-pit.R | 30 scoringutils-0.1.7/scoringutils/tests/testthat/test-sharpness.R | 5 scoringutils-0.1.7/scoringutils/tests/testthat/test-utils_data_handling.R |only scoringutils-0.1.7/scoringutils/vignettes/scoringutils.Rmd | 52 124 files changed, 2182 insertions(+), 1362 deletions(-)
Title: Convert Between Bookmaker Odds and Probabilities
Description: Convert between bookmaker odds and probabilities. Eight different
algorithms are available, including basic normalization, Shin's method
(Hyun Song Shin, (1992) <doi:10.2307/2234526>), and others.
Author: Jonas Christoffer Lindstrøm
Maintainer: Jonas Christoffer Lindstrøm <jonaslindstrom88@gmail.com>
Diff between implied versions 0.3.1 dated 2020-08-02 and 0.4.0 dated 2021-07-14
DESCRIPTION | 13 +- MD5 | 22 ++-- NAMESPACE | 1 NEWS.md | 8 + R/implied_odds.R |only R/implied_probabilities.R | 90 +++++++++++++++++-- inst/doc/introduction.R | 24 +++++ inst/doc/introduction.Rmd | 69 +++++++++++++- inst/doc/introduction.html | 117 ++++++++++++++++++++----- man/implied_odds.Rd |only man/implied_probabilities.Rd | 15 ++- tests/testthat/test_1.R | 198 +++++++++++++++++++++++++++++++++++++++++-- vignettes/introduction.Rmd | 69 +++++++++++++- 13 files changed, 551 insertions(+), 75 deletions(-)
Title: Models for Analysing Moult in Birds
Description: Functions to estimate start and duration of moult from moult
data, based on models developed in Underhill
and Zucchini (1988, 1990).
Author: Birgit Erni <birgit.erni@uct.ac.za>. Based on models
developed by Underhill and Zucchini (1988, 1990).
Maintainer: Birgit Erni <birgit.erni@uct.ac.za>
Diff between moult versions 2.1.0 dated 2018-01-12 and 2.2.0 dated 2021-07-14
DESCRIPTION | 8 +-- MD5 | 20 ++++---- NEWS | 9 +++- R/moult.R | 2 R/ms2pfmg.R | 42 ++++++++++-------- inst/CITATION | 2 inst/doc/moult-vignette.pdf |binary man/moult-package.Rd | 2 man/moult.Rd | 6 +- man/ms2pfmg.Rd | 99 +++++++++++++++++++++++--------------------- man/predict.moult.Rd | 2 11 files changed, 104 insertions(+), 88 deletions(-)
Title: Helper Functions for 'mlr3'
Description: Frequently used helper functions and assertions
used in 'mlr3' and its companion packages. Comes with helper functions
for functional programming, for printing, to work with 'data.table',
as well as some generally useful 'R6' classes. This package also
supersedes the package 'BBmisc'.
Author: Michel Lang [cre, aut] (<https://orcid.org/0000-0001-9754-0393>),
Patrick Schratz [aut] (<https://orcid.org/0000-0003-0748-6624>)
Maintainer: Michel Lang <michellang@gmail.com>
Diff between mlr3misc versions 0.9.2 dated 2021-06-29 and 0.9.3 dated 2021-07-14
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++++---- NAMESPACE | 3 +++ NEWS.md | 4 ++++ R/assert_ro_binding.R |only R/calculate_hash.R |only R/zzz.R | 1 + man/assert_ro_binding.Rd |only man/calculate_hash.Rd |only 9 files changed, 20 insertions(+), 8 deletions(-)
Title: Tests for Survival Data in General Factorial Designs
Description: Implemented are three Wald-type statistic and respective
permuted versions for null hypotheses formulated in terms of cumulative hazard rate functions, medians and the concordance measure, respectively, in the general framework of survival factorial designs with possibly heterogeneous survival and/or censoring distributions, for crossed designs with an arbitrary number of factors and nested designs with up to three factors.
Ditzhaus, Dobler and Pauly (2020) <doi:10.1177/0962280220980784>
Ditzhaus, Janssen, Pauly (2020) <arXiv: 2004.10818v2>
Dobler and Pauly (2019) <doi:10.1177/0962280219831316>.
Author: Marc Ditzhaus [aut],
Dennis Dobler [aut],
Markus Pauly [aut],
Philipp Steinhauer [aut, cre]
Maintainer: Philipp Steinhauer <philipp.steinhauer@tu-dortmund.de>
Diff between GFDsurv versions 0.0.2 dated 2021-04-20 and 0.1.0 dated 2021-07-14
DESCRIPTION | 14 +++++++------- MD5 | 6 +++--- NAMESPACE | 1 - R/shinyGUI.R | 11 +++-------- 4 files changed, 13 insertions(+), 19 deletions(-)
More information about FeatureTerminatoR at CRAN
Permanent link
Title: Perform the Robust Multivariable Mendelian Randomization
Analysis
Description: Perform the robust multivariable Mendelian randomization 'robustMVMR'
analysis in the two-sample Mendelian randomization setting. An example paper
using the 'robustMVMR' package can be found in Yang et al. (2021)
<doi:10.1080/15412555.2021.1955848>. In details, the 'robustMVMR' package
produces both the robust estimators and the robust standard errors
via the MM-estimates, which has been demonstrated to protect against
heteroskedasticity, autocorrelation, and the presence of outliers in
Yohai (1987) <doi:10.1214/aos/1176350366> and
Croux (2003) <https://EconPapers.repec.org/RePEc:ete:ceswps:ces0316>.
Author: Zhao Yang
Maintainer: Zhao Yang <yangz98@connect.hku.hk>
Diff between robustMVMR versions 0.1.0 dated 2020-05-02 and 0.3.1 dated 2021-07-14
DESCRIPTION | 21 +++++++++++-------- MD5 | 9 ++++---- NEWS.md |only R/robustMVMR.R | 58 ++++++++++++++++++++++++++++-------------------------- man/IL1_LUSC.Rd | 4 ++- man/robustMVMR.Rd | 58 ++++++++++++++++++++++++++++-------------------------- 6 files changed, 82 insertions(+), 68 deletions(-)
Title: Interface to the 'Perspective' API
Description: Interface to the 'Perspective' API, which can be found at the following URL: <https://github.com/conversationai/perspectiveapi#perspective-comment-analyzer-api>.
The 'Perspective' API uses machine learning models to score the perceived impact a comment might have on a conversation (i.e. TOXICITY, INFLAMMATORY, etc.).
'peRspective' provides access to the API and returns tidy data frames with results of the specified machine learning model(s).
Author: Fabio Votta [aut, cre]
Maintainer: Fabio Votta <fabio.votta@gmail.com>
Diff between peRspective versions 0.1.0 dated 2019-05-20 and 0.1.1 dated 2021-07-14
peRspective-0.1.0/peRspective/NEWS.md |only peRspective-0.1.0/peRspective/README.md |only peRspective-0.1.1/peRspective/DESCRIPTION | 13 - peRspective-0.1.1/peRspective/MD5 | 58 ++++---- peRspective-0.1.1/peRspective/NAMESPACE | 3 peRspective-0.1.1/peRspective/R/peRspective.R | 28 ++- peRspective-0.1.1/peRspective/R/prsp_score.R | 10 - peRspective-0.1.1/peRspective/R/prsp_stream.R | 55 +++++-- peRspective-0.1.1/peRspective/R/utils.R | 72 ++++++++++ peRspective-0.1.1/peRspective/data/prsp_models.rda |binary peRspective-0.1.1/peRspective/man/db_append.Rd |only peRspective-0.1.1/peRspective/man/db_get_data.Rd |only peRspective-0.1.1/peRspective/man/db_remove.Rd |only peRspective-0.1.1/peRspective/man/figures/README-unnamed-chunk-10-1.png |binary peRspective-0.1.1/peRspective/man/figures/README-unnamed-chunk-11-1.png |binary peRspective-0.1.1/peRspective/man/figures/README-unnamed-chunk-12-1.png |binary peRspective-0.1.1/peRspective/man/figures/README-unnamed-chunk-13-1.png |binary peRspective-0.1.1/peRspective/man/figures/README-unnamed-chunk-14-1.png |binary peRspective-0.1.1/peRspective/man/figures/README-unnamed-chunk-15-1.png |binary peRspective-0.1.1/peRspective/man/figures/README-unnamed-chunk-16-1.png |binary peRspective-0.1.1/peRspective/man/figures/README-unnamed-chunk-9-1.png |binary peRspective-0.1.1/peRspective/man/figures/kittens.jpg |only peRspective-0.1.1/peRspective/man/form_request.Rd | 5 peRspective-0.1.1/peRspective/man/perspective-package.Rd | 27 ++- peRspective-0.1.1/peRspective/man/perspective_api_key.Rd | 2 peRspective-0.1.1/peRspective/man/prsp_score.Rd | 17 +- peRspective-0.1.1/peRspective/man/prsp_stream.Rd | 20 ++ peRspective-0.1.1/peRspective/man/unnest_scores.Rd | 2 peRspective-0.1.1/peRspective/tests/testthat/test-print-progress.R | 4 peRspective-0.1.1/peRspective/tests/testthat/test-prsp-score.R | 2 peRspective-0.1.1/peRspective/tests/testthat/test-prsp-stream.R | 27 +++ peRspective-0.1.1/peRspective/tests/testthat/test-sentence-comment.R | 1 peRspective-0.1.1/peRspective/tests/testthat/test-specify-decimal.R | 1 33 files changed, 251 insertions(+), 96 deletions(-)
Title: Combining Tree-Boosting with Gaussian Process and Mixed Effects
Models
Description: An R package that allows for combining tree-boosting with Gaussian process and mixed effects models. It also allows for independently doing tree-boosting as well as inference and prediction for Gaussian process and mixed effects models. See <https://github.com/fabsig/GPBoost> for more information on the software and Sigrist (2020) <arXiv:2004.02653> and Sigrist (2021) <arXiv:2105.08966> for more information on the methodology.
Author: Fabio Sigrist [aut, cre],
Benoit Jacob [cph],
Gael Guennebaud [cph],
Nicolas Carre [cph],
Pierre Zoppitelli [cph],
Gauthier Brun [cph],
Jean Ceccato [cph],
Jitse Niesen [cph],
Other authors of Eigen for the included version of Eigen [ctb, cph],
Timothy A. Davis [cph],
Guolin Ke [ctb],
Damien Soukhavong [ctb],
James Lamb [ctb],
Other authors of LightGBM for the included version of LightGBM [ctb],
Microsoft Corporation [cph],
Dropbox, Inc. [cph],
Jay Loden [cph],
Dave Daeschler [cph],
Giampaolo Rodola [cph],
Alberto Ferreira [ctb],
Daniel Lemire [ctb],
Victor Zverovich [cph],
IBM Corporation [ctb],
Keith O'Hara [cph],
Stephen L. Moshier [cph]
Maintainer: Fabio Sigrist <fabiosigrist@gmail.com>
Diff between gpboost versions 0.6.3 dated 2021-06-18 and 0.6.6 dated 2021-07-14
DESCRIPTION | 14 MD5 | 72 + NAMESPACE | 1 R/GPModel.R | 532 +------------- R/gpb.Booster.R | 30 R/gpb.plot.partial.dependence.R |only R/utils.R | 2 configure.ac | 2 demo/00Index | 1 demo/Grabit.R |only demo/parameter_tuning.R | 2 man/GPModel.Rd | 14 man/GPModel_shared_params.Rd | 28 man/fitGPModel.Rd | 14 man/gpb.plot.partial.dependence.Rd |only man/predict.GPModel.Rd | 4 man/predict.gpb.Booster.Rd | 39 - src/DF_utils.cpp |only src/Makevars.in | 1 src/Makevars.win | 1 src/Makevars.win.in | 1 src/c_api.cpp | 22 src/gpboost_R.cpp | 89 -- src/include/GPBoost/DF_utils.h |only src/include/GPBoost/likelihoods.h | 40 - src/include/GPBoost/re_model.h | 8 src/include/GPBoost/re_model_template.h | 208 ++--- src/include/GPBoost/type_defs.h | 3 src/include/LightGBM/c_api.h | 22 src/include/LightGBM/config.h | 19 src/io/config_auto.cpp | 13 src/objective/objective_function.cpp | 4 src/objective/regression_objective.hpp | 218 +++-- src/re_model.cpp | 8 tests/testthat/test_GPBoost_algorithm.R | 2 tests/testthat/test_GPBoost_algorithm_non_Gaussian_data.R | 2 tests/testthat/test_GPModel_combined_GP_random_effects.R | 2 tests/testthat/test_GPModel_grouped_random_effects.R | 21 tests/testthat/test_GPModel_non_Gaussian_data.R | 16 tests/testthat/test_Grabit.R |only 40 files changed, 581 insertions(+), 874 deletions(-)
Title: Generalized Joint Attribute Modeling
Description: Analyzes joint attribute data (e.g., species abundance) that are combinations of continuous and discrete data with Gibbs sampling. Full model and computation details are described in Clark et al. (2018) <doi:10.1002/ecm.1241>.
Author: James S. Clark, Daniel Taylor-Rodriquez
Maintainer: James S. Clark <jimclark@duke.edu>
Diff between gjam versions 2.3.8 dated 2021-07-06 and 2.3.9 dated 2021-07-14
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/gjamHfunctions.R | 4 ++-- inst/doc/gjamVignette.Rmd | 2 +- inst/doc/gjamVignette.html | 34 +++++++++++++++++----------------- man/gjam-package.Rd | 4 ++-- vignettes/gjamVignette.Rmd | 2 +- 7 files changed, 33 insertions(+), 33 deletions(-)
Title: Misreported Time Series Analysis
Description: Provides a simple and trustworthy methodology for the analysis of misreported continuous time series. See Moriña, D, Fernández-Fontelo, A, Cabaña, A, Puig P. (2021) <arXiv:2003.09202v2>.
Author: David Moriña Soler [aut, cre] (<https://orcid.org/0000-0001-5949-7443>),
Amanda Fernández-Fontelo [aut],
Alejandra Cabaña [aut],
Pedro Puig [aut]
Maintainer: David Moriña Soler <dmorina@ub.edu>
Diff between MisRepARMA versions 0.0.1 dated 2021-06-30 and 0.0.2 dated 2021-07-14
DESCRIPTION | 10 - MD5 | 21 ++- NAMESPACE | 7 + R/estimate.R | 233 ++++++++++++---------------------------- R/fitMisRepARMA.R | 54 ++++++--- R/print.summary.fitMisRepARMA.R |only R/ran.genf.R |only R/reconstruct.R | 31 +---- R/summary.fitMisRepARMA.R |only man/MisRepARMA-internal.Rd | 6 + man/MisRepARMA-package.Rd | 12 +- man/fitMisRepARMA.Rd | 29 ++-- man/reconstruct.Rd | 20 +-- 13 files changed, 179 insertions(+), 244 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-06-26 0.2.0
2021-03-01 0.1.27.1
2020-10-08 0.1.2
2020-03-20 0.1
Title: Read and Write Rectangular Text Data Quickly
Description: The goal of 'vroom' is to read and write data (like
'csv', 'tsv' and 'fwf') quickly. When reading it uses a quick initial
indexing step, then reads the values lazily , so only the data you
actually use needs to be read. The writer formats the data in
parallel and writes to disk asynchronously from formatting.
Author: Jim Hester [aut, cre] (<https://orcid.org/0000-0002-2739-7082>),
Hadley Wickham [aut] (<https://orcid.org/0000-0003-4757-117X>),
https://github.com/mandreyel/ [cph] (mio library),
Jukka Jylänki [cph] (grisu3 implementation),
Mikkel Jørgensen [cph] (grisu3 implementation),
RStudio [cph, fnd]
Maintainer: Jim Hester <jim.hester@rstudio.com>
Diff between vroom versions 1.5.2 dated 2021-07-08 and 1.5.3 dated 2021-07-14
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- NEWS.md | 9 +++++++++ R/col_types.R | 6 +++++- build/vignette.rds |binary build/vroom.pdf |binary inst/doc/vroom.html | 2 +- src/collectors.h | 12 ++++++++++-- src/delimited_index.cc | 3 +++ tests/testthat/test-col_types.R | 5 +++++ tests/testthat/test-vroom.R | 24 ++++++++++++++++++------ 11 files changed, 64 insertions(+), 23 deletions(-)
Title: Autograph R for 'Tensorflow'
Description: Translate R control flow expressions into 'Tensorflow' graphs.
Author: Tomasz Kalinowski [aut, cre]
Maintainer: Tomasz Kalinowski <kalinowskit@gmail.com>
Diff between tfautograph versions 0.2.0 dated 2020-01-08 and 0.3.0 dated 2021-07-14
tfautograph-0.2.0/tfautograph/inst |only tfautograph-0.2.0/tfautograph/man/reexports.Rd |only tfautograph-0.2.0/tfautograph/tests/spelling.R |only tfautograph-0.3.0/tfautograph/DESCRIPTION | 13 +- tfautograph-0.3.0/tfautograph/MD5 | 53 ++++------ tfautograph-0.3.0/tfautograph/NAMESPACE | 5 tfautograph-0.3.0/tfautograph/NEWS.md |only tfautograph-0.3.0/tfautograph/R/for-tensor.R | 13 +- tfautograph-0.3.0/tfautograph/R/for.R | 5 tfautograph-0.3.0/tfautograph/R/hints.R | 10 + tfautograph-0.3.0/tfautograph/R/if.R | 2 tfautograph-0.3.0/tfautograph/R/loop-common.R | 1 tfautograph-0.3.0/tfautograph/R/methods.R | 7 - tfautograph-0.3.0/tfautograph/R/opts.R | 4 tfautograph-0.3.0/tfautograph/R/print.R | 3 tfautograph-0.3.0/tfautograph/R/tf-ctrl-flow-wrappers.R | 1 tfautograph-0.3.0/tfautograph/R/tf_assert.R | 2 tfautograph-0.3.0/tfautograph/R/undefs.R | 2 tfautograph-0.3.0/tfautograph/R/utils.R | 13 +- tfautograph-0.3.0/tfautograph/R/view.R | 1 tfautograph-0.3.0/tfautograph/R/while.R | 23 +++- tfautograph-0.3.0/tfautograph/R/zzz-autograph.R | 9 + tfautograph-0.3.0/tfautograph/README.md | 13 +- tfautograph-0.3.0/tfautograph/man/ag_while_opts.Rd | 3 tfautograph-0.3.0/tfautograph/tests/run-tests | 51 ++++++++- tfautograph-0.3.0/tfautograph/tests/testthat/helper-utils.R | 1 tfautograph-0.3.0/tfautograph/tests/testthat/test-break.R | 1 tfautograph-0.3.0/tfautograph/tests/testthat/test-hints.R |only tfautograph-0.3.0/tfautograph/tests/testthat/test-if.R | 1 tfautograph-0.3.0/tfautograph/tests/testthat/test-stopifnot.R | 1 30 files changed, 137 insertions(+), 101 deletions(-)
Title: 'SAS' Linear Model
Description: This is a core implementation of 'SAS' procedures for linear models - GLM, REG, and ANOVA. Some R packages provide type II and type III SS. However, the results of nested and complex designs are often different from those of 'SAS.' Different results does not necessarily mean incorrectness. However, many wants the same results to SAS. This package aims to achieve that.
Reference: Littell RC, Stroup WW, Freund RJ (2002, ISBN:0-471-22174-0).
Author: Kyun-Seop Bae [aut]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between sasLM versions 0.6.0 dated 2021-06-15 and 0.6.1 dated 2021-07-14
sasLM-0.6.0/sasLM/inst/doc/Report-Different-Simplest2105301642.pdf |only sasLM-0.6.0/sasLM/inst/doc/Report-NOT-OKs2105301640.pdf |only sasLM-0.6.0/sasLM/inst/doc/Validation-Report-ANOVA-2105301636.pdf |only sasLM-0.6.0/sasLM/inst/doc/Validation-Report-GLM-2105301631.pdf |only sasLM-0.6.1/sasLM/DESCRIPTION | 6 sasLM-0.6.1/sasLM/MD5 | 70 +++++----- sasLM-0.6.1/sasLM/NAMESPACE | 2 sasLM-0.6.1/sasLM/R/CV.R | 2 sasLM-0.6.1/sasLM/R/Kurtosis.R | 3 sasLM-0.6.1/sasLM/R/KurtosisSE.R | 4 sasLM-0.6.1/sasLM/R/LCL.R | 3 sasLM-0.6.1/sasLM/R/Max.R | 4 sasLM-0.6.1/sasLM/R/Mean.R | 4 sasLM-0.6.1/sasLM/R/Median.R | 6 sasLM-0.6.1/sasLM/R/Min.R | 6 sasLM-0.6.1/sasLM/R/PDIFF.R | 9 + sasLM-0.6.1/sasLM/R/Range.R | 4 sasLM-0.6.1/sasLM/R/SD.R | 4 sasLM-0.6.1/sasLM/R/SEM.R | 6 sasLM-0.6.1/sasLM/R/Skewness.R | 5 sasLM-0.6.1/sasLM/R/SkewnessSE.R | 4 sasLM-0.6.1/sasLM/R/UCL.R | 4 sasLM-0.6.1/sasLM/R/geoCV.R |only sasLM-0.6.1/sasLM/R/geoMean.R |only sasLM-0.6.1/sasLM/R/tsum0.R | 2 sasLM-0.6.1/sasLM/R/tsum1.R | 2 sasLM-0.6.1/sasLM/R/tsum2.R | 2 sasLM-0.6.1/sasLM/R/tsum3.R | 2 sasLM-0.6.1/sasLM/inst/NEWS.Rd | 8 + sasLM-0.6.1/sasLM/inst/doc/Report-Different-Simplest2107140926.pdf |only sasLM-0.6.1/sasLM/inst/doc/Report-NOT-OKs2107140935.pdf |only sasLM-0.6.1/sasLM/inst/doc/Validation-Report-ANOVA-2107140927.pdf |only sasLM-0.6.1/sasLM/inst/doc/Validation-Report-GLM-2107140930.pdf |only sasLM-0.6.1/sasLM/inst/doc/sasLM-manual.pdf |binary sasLM-0.6.1/sasLM/man/CONTR.Rd | 1 sasLM-0.6.1/sasLM/man/PDIFF.Rd | 3 sasLM-0.6.1/sasLM/man/geoCV.Rd |only sasLM-0.6.1/sasLM/man/geoMean.Rd |only sasLM-0.6.1/sasLM/man/tsum0.Rd | 2 sasLM-0.6.1/sasLM/man/tsum1.Rd | 3 sasLM-0.6.1/sasLM/man/tsum2.Rd | 2 sasLM-0.6.1/sasLM/man/tsum3.Rd | 2 42 files changed, 99 insertions(+), 76 deletions(-)