Title: Tools for Inference in the Presence of a Monotone Likelihood
Description: Proportional hazards estimation in the presence of a partially monotone likelihood has difficulties, in that finite estimators do not exist. These difficulties are related to those arising from logistic and multinomial regression. References for methods are given in the separate function documents.
Author: John E. Kolassa and Juan Zhang
Maintainer: John E. Kolassa <kolassa@stat.rutgers.edu>
Diff between PHInfiniteEstimates versions 1.9 dated 2021-03-23 and 2.0 dated 2021-07-23
DESCRIPTION | 8 ++++---- MD5 | 16 +++++++++++++--- NAMESPACE | 1 + R/pllk.R |only build/partial.rdb |binary inst/Makefile |only inst/cntdup.f90 |only inst/copytox.f90 |only inst/dobnds.f90 |only inst/drive.f90 |only inst/expand.f90 |only inst/input |only inst/network.f90 |only man/pllk.Rd |only 14 files changed, 18 insertions(+), 7 deletions(-)
More information about PHInfiniteEstimates at CRAN
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Title: Interpreting Glucose Data from Continuous Glucose Monitors
Description: Implements a wide range of metrics for measuring glucose control and glucose variability based on continuous glucose monitoring data. The list of implemented metrics is summarized in Rodbard (2009) <doi:10.1089/dia.2009.0015>. Additional visualization tools include time-series plots, lasagna plots and ambulatory glucose profile report.
Author: Steve Broll [aut],
David Buchanan [aut],
Elizabeth Chun [aut],
John Muschelli [aut] (<https://orcid.org/0000-0001-6469-1750>),
Nathaniel Fernandes [aut],
Jung Hoon Seo [aut],
Johnathan Shih [aut],
Jacek Urbanek [aut],
John Schwenck [aut],
Marielle Hicban [ctb],
Mary Martin [ctb],
Pratik Patel [ctb],
Meyappan Ashok [ctb],
Nhan Nguyen [ctb],
Irina Gaynanova [aut, cre] (<https://orcid.org/0000-0002-4116-0268>)
Maintainer: Irina Gaynanova <irinag@stat.tamu.edu>
Diff between iglu versions 2.1.0 dated 2021-01-27 and 3.0.0 dated 2021-07-23
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Title: Descriptive Statistics, Transition Plots, and More
Description: Tools for making the descriptive "Table 1" used in medical
articles, a transition plot for showing changes between categories
(also known as a Sankey diagram), flow charts by extending the grid package,
a method for variable selection based on the SVD, Bézier lines with arrows
complementing the ones in the 'grid' package, and more.
Author: Max Gordon <max@gforge.se>
Maintainer: Max Gordon <max@gforge.se>
Diff between Gmisc versions 2.0.2 dated 2021-05-04 and 2.1.0 dated 2021-07-23
DESCRIPTION | 7 MD5 | 33 NEWS | 6 NEWS.md |only R/Gmisc.R | 2 R/boxGrobs_boxGrob.R | 17 R/getSvdMostInfluential.R | 162 +-- build/vignette.rds |binary inst/doc/Descriptives.html | 488 +++------- inst/doc/Grid-based_flowcharts.html | 1230 ++++++++++---------------- inst/doc/Transition-class.html | 366 +------ inst/doc/transitionPlot.html | 387 ++------ inst/examples/getSvdMostInfluential_example.R | 11 man/box.Rd | 11 man/getSvdMostInfluential.Rd | 9 src/RcppExports.cpp | 5 tests/testthat/Rplots.pdf |binary tests/testthat/test-bezier.R | 37 18 files changed, 1027 insertions(+), 1744 deletions(-)
Title: Diverse Cluster Ensemble in R
Description: Performs cluster analysis using an ensemble
clustering framework, Chiu & Talhouk (2018)
<doi:10.1186/s12859-017-1996-y>. Results from a diverse set of
algorithms are pooled together using methods such as majority voting,
K-Modes, LinkCluE, and CSPA. There are options to compare cluster
assignments across algorithms using internal and external indices,
visualizations such as heatmaps, and significance testing for the
existence of clusters.
Author: Derek Chiu [aut, cre],
Aline Talhouk [aut],
Johnson Liu [ctb, com]
Maintainer: Derek Chiu <dchiu@bccrc.ca>
Diff between diceR versions 1.0.4 dated 2021-06-04 and 1.1.0 dated 2021-07-23
DESCRIPTION | 14 - MD5 | 26 +-- NEWS.md | 4 R/algorithms.R | 17 ++ R/consensus_cluster.R | 4 README.md | 7 build/vignette.rds |binary inst/doc/overview.Rmd | 2 inst/doc/overview.html | 4 man/consensus_cluster.Rd | 339 +++++++++++++++++++++++------------------------ man/dice.Rd | 272 ++++++++++++++++++------------------- man/diceR-package.Rd | 86 +++++------ src/RcppExports.cpp | 5 vignettes/overview.Rmd | 2 14 files changed, 406 insertions(+), 376 deletions(-)
Title: Tools for Behavior Change Researchers and Professionals
Description: Contains specialised analyses and
visualisation tools for behavior change science.
These facilitate conducting determinant studies
(for example, using confidence interval-based
estimation of relevance, CIBER, or CIBERlite
plots, see Crutzen, Noijen & Peters (2017)
<doi:10.3389/fpubh.2017.00165>),
systematically developing, reporting,
and analysing interventions (for example, using
Acyclic Behavior Change Diagrams), and reporting
about intervention effectiveness (for example, using
the Numbers Needed for Change, see Gruijters & Peters
(2017) <doi:10.31234/osf.io/2bau7>), and computing the
required sample size (using the Meaningful Change
Definition, see Gruijters & Peters (2019)
<doi:10.31234/osf.io/jc295>).
This package is especially useful for
researchers in the field of behavior change or
health psychology and to behavior change
professionals such as intervention developers and
prevention workers.
Author: Gjalt-Jorn Peters [aut, cre] (<https://orcid.org/0000-0002-0336-9589>),
Rik Crutzen [ctb] (<https://orcid.org/0000-0002-3731-6610>),
Stefan Gruijters [ctb] (<https://orcid.org/0000-0003-0141-0071>)
Maintainer: Gjalt-Jorn Peters <gjalt-jorn@a-bc.eu>
Diff between behaviorchange versions 0.4.0 dated 2021-03-15 and 0.4.3 dated 2021-07-23
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More information about behaviorchange at CRAN
Permanent link
Title: Dynamical Systems Approach to Infectious Disease Epidemiology
(Ecology/Evolution)
Description: Exploration of simulation models (apps) of various infectious disease transmission dynamics scenarios.
The purpose of the package is to help individuals learn
about infectious disease epidemiology (ecology/evolution) from a dynamical systems perspective.
All apps include explanations of the underlying models and instructions on what to do with the models.
Author: Andreas Handel [aut, cre] (<https://orcid.org/0000-0002-4622-1146>),
Cody Dailey [ctb],
Isaac Chun-Hai Fung [ctb],
Spencer Hall [ctb],
Ben Listyg [ctb],
Brian McKay [ctb],
John Rossow [ctb],
Sina Solaimanpour [ctb],
Alexis Vittengl [ctb],
Henok Woldu [ctb]
Maintainer: Andreas Handel <ahandel@uga.edu>
Diff between DSAIDE versions 0.9.1 dated 2021-03-22 and 0.9.3 dated 2021-07-23
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DSAIDE-0.9.3/DSAIDE/inst/simulatorfunctions/simulate_Complex_ID_Control_ode.R | 10 DSAIDE-0.9.3/DSAIDE/inst/simulatorfunctions/simulate_Drug_Resistance_Evolution_stochastic.R | 177 - DSAIDE-0.9.3/DSAIDE/inst/simulatorfunctions/simulate_Environmental_Transmission_model_ode.R | 154 - DSAIDE-0.9.3/DSAIDE/inst/simulatorfunctions/simulate_Host_Heterogeneity_Model_ode.R | 168 - DSAIDE-0.9.3/DSAIDE/inst/simulatorfunctions/simulate_SEIRSd_model_stochastic.R | 171 - DSAIDE-0.9.3/DSAIDE/inst/simulatorfunctions/simulate_SIRSd_model_ode.R | 144 - DSAIDE-0.9.3/DSAIDE/inst/simulatorfunctions/simulate_SIRSd_model_stochastic.R | 159 - DSAIDE-0.9.3/DSAIDE/inst/simulatorfunctions/simulate_SIR_model_discrete.R | 150 - DSAIDE-0.9.3/DSAIDE/inst/simulatorfunctions/simulate_SIR_model_ode.R | 138 - DSAIDE-0.9.3/DSAIDE/inst/simulatorfunctions/simulate_SIR_modelexploration.R | 226 - DSAIDE-0.9.3/DSAIDE/inst/simulatorfunctions/simulate_SIR_usanalysis.R | 256 +- DSAIDE-0.9.3/DSAIDE/inst/simulatorfunctions/simulate_Vector_transmission_model_ode.R | 158 - DSAIDE-0.9.3/DSAIDE/inst/simulatorfunctions/simulate_flu_fit.R | 360 +-- DSAIDE-0.9.3/DSAIDE/inst/simulatorfunctions/simulate_idcontrolmultigroup_ode.R | 234 +- DSAIDE-0.9.3/DSAIDE/inst/simulatorfunctions/simulate_idcontrolmultioutbreak_ode.R | 248 +- DSAIDE-0.9.3/DSAIDE/inst/simulatorfunctions/simulate_idsurveillance_ode.R |only DSAIDE-0.9.3/DSAIDE/inst/simulatorfunctions/simulate_idvaccine_ode.R | 174 - DSAIDE-0.9.3/DSAIDE/inst/simulatorfunctions/simulate_noro_fit.R | 356 +-- DSAIDE-0.9.3/DSAIDE/inst/simulatorfunctions/simulatorfunctions.zip |binary DSAIDE-0.9.3/DSAIDE/man/DSAIDE.Rd | 10 DSAIDE-0.9.3/DSAIDE/man/dsaidemenu.Rd | 40 DSAIDE-0.9.3/DSAIDE/man/generate_ggplot.Rd | 4 DSAIDE-0.9.3/DSAIDE/man/simulate_Characteristics_of_ID_ode.Rd | 2 DSAIDE-0.9.3/DSAIDE/man/simulate_Complex_ID_Control_ode.Rd | 4 DSAIDE-0.9.3/DSAIDE/man/simulate_Drug_Resistance_Evolution_stochastic.Rd | 8 DSAIDE-0.9.3/DSAIDE/man/simulate_Environmental_Transmission_model_ode.Rd | 2 DSAIDE-0.9.3/DSAIDE/man/simulate_Host_Heterogeneity_Model_ode.Rd | 2 DSAIDE-0.9.3/DSAIDE/man/simulate_SEIRSd_model_stochastic.Rd | 8 DSAIDE-0.9.3/DSAIDE/man/simulate_SIRSd_model_ode.Rd | 2 DSAIDE-0.9.3/DSAIDE/man/simulate_SIRSd_model_stochastic.Rd | 8 DSAIDE-0.9.3/DSAIDE/man/simulate_SIR_model_discrete.Rd | 2 DSAIDE-0.9.3/DSAIDE/man/simulate_SIR_model_ode.Rd | 2 DSAIDE-0.9.3/DSAIDE/man/simulate_Vector_transmission_model_ode.Rd | 2 DSAIDE-0.9.3/DSAIDE/man/simulate_idsurveillance_ode.Rd |only DSAIDE-0.9.3/DSAIDE/tests/testthat/test-all_simulators.R | 56 DSAIDE-0.9.3/DSAIDE/tests/testthat/test-generate_documentation.R | 5 DSAIDE-0.9.3/DSAIDE/tests/testthat/test-generate_ggplot.R | 88 DSAIDE-0.9.3/DSAIDE/tests/testthat/test-generate_plotly.R | 80 DSAIDE-0.9.3/DSAIDE/tests/testthat/test-generate_usplot.R | 120 - DSAIDE-0.9.3/DSAIDE/tests/testthat/test-generate_usplot2.R | 120 - DSAIDE-0.9.3/DSAIDE/tests/testthat/test-modelexploration.R | 84 DSAIDE-0.9.3/DSAIDE/tests/testthat/test-run_model.R | 155 - DSAIDE-0.9.3/DSAIDE/vignettes/DSAIDE.Rmd | 14 DSAIDE-0.9.3/DSAIDE/vignettes/mainmenu.png |binary DSAIDE-0.9.3/DSAIDE/vignettes/modelexample.png |binary DSAIDE-0.9.3/DSAIDE/vignettes/whattodoexample.png |binary 156 files changed, 10432 insertions(+), 11412 deletions(-)
Title: Find Pattern in Files
Description: Creates a HTML widget which displays the results of searching for a pattern in files in a given folder. The results can be viewed in the 'RStudio' viewer pane, included in a 'R Markdown' document or in a 'Shiny' app.
Author: Stéphane Laurent [aut, cre],
Rob Burns [ctb, cph] ('ansi-to-html' library)
Maintainer: Stéphane Laurent <laurent_step@outlook.fr>
Diff between findInFiles versions 0.1.2 dated 2020-11-16 and 0.2.0 dated 2021-07-23
DESCRIPTION | 9 - MD5 | 13 - NAMESPACE | 3 NEWS.md | 33 ++-- R/findInFiles.R | 412 ++++++++++++++++++++++++++++++--------------------- R/grepInFiles.R | 184 +++++++++++----------- man/FIF2dataframe.Rd |only man/findInFiles.Rd | 17 +- 8 files changed, 389 insertions(+), 282 deletions(-)
Title: Tidy Model Stacking
Description: Model stacking is an ensemble technique
that involves training a model to combine the outputs of many
diverse statistical models, and has been shown to improve
predictive performance in a variety of settings. 'stacks'
implements a grammar for 'tidymodels'-aligned model stacking.
Author: Simon Couch [aut, cre],
Max Kuhn [aut],
RStudio [cph]
Maintainer: Simon Couch <simonpatrickcouch@gmail.com>
Diff between stacks versions 0.2.0 dated 2021-04-20 and 0.2.1 dated 2021-07-23
DESCRIPTION | 18 +-- MD5 | 65 ++++++------- NEWS.md | 20 ++-- R/add_candidates.R | 10 +- R/blend_predictions.R | 26 +++-- R/plots.R | 32 +++++- R/print.R | 6 - R/utils.R | 3 README.md | 64 ++++++++---- build/partial.rdb |binary build/vignette.rds |binary data/class_folds.rda |binary data/class_res_nn.rda |binary data/class_res_rf.rda |binary data/log_res_nn.rda |binary data/log_res_rf.rda |binary data/reg_folds.rda |binary data/reg_res_lr.rda |binary data/reg_res_sp.rda |binary data/reg_res_svm.rda |binary data/tree_frogs_class_test.rda |binary data/tree_frogs_reg_test.rda |binary inst/doc/basics.R | 12 +- inst/doc/basics.Rmd | 12 +- inst/doc/basics.html | 111 +++++++++++----------- inst/doc/classification.html | 133 ++++++++++++++------------- tests/testthat/out/model_stack_class.txt | 28 ++--- tests/testthat/out/model_stack_class_fit.txt | 28 ++--- tests/testthat/out/model_stack_log.txt | 16 +-- tests/testthat/out/model_stack_log_fit.txt | 16 +-- tests/testthat/out/model_stack_reg.txt | 13 +- tests/testthat/out/model_stack_reg_fit.txt | 13 +- tests/testthat/test_plots.R |only vignettes/basics.Rmd | 12 +- 34 files changed, 359 insertions(+), 279 deletions(-)
Title: Continuous Time Structural Equation Modelling
Description: Hierarchical continuous (and discrete) time state space modelling, for linear
and nonlinear systems measured by continuous variables, with limited support for
binary data. The subject specific dynamic system is modelled as a stochastic
differential equation (SDE) or difference equation, measurement models are typically multivariate normal factor models.
Linear mixed effects SDE's estimated via maximum likelihood and optimization are the default.
Nonlinearities, (state dependent parameters) and random effects on all parameters
are possible, using either max likelihood / max a posteriori optimization
(with optional importance sampling) or Stan's Hamiltonian Monte Carlo sampling.
See <https://github.com/cdriveraus/ctsem/raw/master/vignettes/hierarchicalmanual.pdf>
for details. Priors may be used. For the conceptual overview of the hierarchical Bayesian
linear SDE approach,
see <https://www.researchgate.net/publication/324093594_Hierarchical_Bayesian_Continuous_Time_Dynamic_Modeling>.
Exogenous inputs may also be included, for an overview of such possibilities see <https://www.researchgate.net/publication/328221807_Understanding_the_Time_Course_of_Interventions_with_Continuous_Time_Dynamic_Models> .
Stan based functions are not available on 32 bit Windows systems at present.
<https://cdriver.netlify.app/> contains some tutorial blog posts.
Author: Charles Driver [aut, cre, cph],
Manuel Voelkle [aut, cph],
Han Oud [aut, cph],
Trustees of Columbia University [cph]
Maintainer: Charles Driver <charles.driver@ibe.uzh.ch>
Diff between ctsem versions 3.5.2 dated 2021-06-17 and 3.5.4 dated 2021-07-23
DESCRIPTION | 21 ++--- MD5 | 49 ++++++------ NEWS | 7 + R/ctKalman.R | 37 ++++++--- R/ctModelLatex.R | 2 R/ctStanContinuousPars.R | 3 R/ctStanData.R | 48 ++++++++---- R/ctStanModel.R | 4 - R/ctStanModelWriter.R | 91 +++++++++++++--------- R/ctStanTIpredeffects.R | 14 +++ R/ctSummarise.R | 159 +++++++++++++++++++++++----------------- R/ctdataupdate.R | 11 -- R/ctsem.R | 21 ++++- R/stanWplot.R | 39 ++++++--- R/stanmodels.R | 21 +---- R/stanoptimis.R | 15 ++- data/ctstantestfit.rda |binary inst/doc/hierarchicalmanual.pdf |binary man/plot.ctKalmanDF.Rd | 2 src/Makevars | 4 - src/Makevars.win | 4 - src/stan_files/cov.stan | 12 +-- src/stan_files/ctsm.stan | 91 +++++++++++++--------- src/stan_files/ctsmgen.stan | 91 +++++++++++++--------- tests/testthat/test-corrcheck.R |only tests/testthat/test-knownFits.R | 3 26 files changed, 448 insertions(+), 301 deletions(-)
Title: Soil Database Interface
Description: A collection of functions for reading data from USDA-NCSS soil databases.
Author: Dylan Beaudette [aut],
Jay Skovlin [aut],
Stephen Roecker [aut],
Andrew Brown [aut, cre]
Maintainer: Andrew Brown <andrew.g.brown@usda.gov>
Diff between soilDB versions 2.6.2 dated 2021-05-16 and 2.6.3 dated 2021-07-23
soilDB-2.6.2/soilDB/R/get_OSD_JSON.R |only soilDB-2.6.2/soilDB/man/dot-dump_NASIS_table.Rd |only soilDB-2.6.2/soilDB/man/dot-get_NASIS_table_key_by_name.Rd |only soilDB-2.6.2/soilDB/man/dot-get_NASIS_table_name_by_purpose.Rd |only soilDB-2.6.2/soilDB/man/get_OSD_JSON.Rd |only soilDB-2.6.2/soilDB/tests/testthat/test-get_OSD_JSON.R |only soilDB-2.6.3/soilDB/DESCRIPTION | 6 soilDB-2.6.3/soilDB/MD5 | 256 +++--- soilDB-2.6.3/soilDB/NAMESPACE | 2 soilDB-2.6.3/soilDB/NEWS.md | 24 soilDB-2.6.3/soilDB/R/ISSR800.R | 2 soilDB-2.6.3/soilDB/R/OSDquery.R | 5 soilDB-2.6.3/soilDB/R/ROSETTA.R | 32 soilDB-2.6.3/soilDB/R/SDA-spatial.R | 137 ++- soilDB-2.6.3/soilDB/R/SDA_hydric.R | 24 soilDB-2.6.3/soilDB/R/SDA_interpretations.R | 278 +++--- soilDB-2.6.3/soilDB/R/SDA_properties.R | 423 +++++----- soilDB-2.6.3/soilDB/R/SDA_query.R | 70 + soilDB-2.6.3/soilDB/R/SDA_utils.R |only soilDB-2.6.3/soilDB/R/createStaticNASIS.R | 22 soilDB-2.6.3/soilDB/R/dbQueryNASIS.R | 6 soilDB-2.6.3/soilDB/R/estimateColorMixture.R | 2 soilDB-2.6.3/soilDB/R/fetchEDIT_tools.R | 16 soilDB-2.6.3/soilDB/R/fetchHenry.R | 2 soilDB-2.6.3/soilDB/R/fetchKSSL.R | 2 soilDB-2.6.3/soilDB/R/fetchNASIS.R | 2 soilDB-2.6.3/soilDB/R/fetchNASISLabData.R | 2 soilDB-2.6.3/soilDB/R/fetchNASISWebReport.R | 2 soilDB-2.6.3/soilDB/R/fetchNASIS_pedons.R | 23 soilDB-2.6.3/soilDB/R/fetchNOAA.R | 4 soilDB-2.6.3/soilDB/R/fetchOSD.R | 66 + soilDB-2.6.3/soilDB/R/fetchPedonPC.R | 8 soilDB-2.6.3/soilDB/R/fetchSCAN.R | 4 soilDB-2.6.3/soilDB/R/fetchSDA_spatial.R | 43 - soilDB-2.6.3/soilDB/R/fetchSoilGrids.R | 11 soilDB-2.6.3/soilDB/R/fetchVegdata.R | 2 soilDB-2.6.3/soilDB/R/getHzErrorsNASIS.R | 7 soilDB-2.6.3/soilDB/R/get_NASIS_table_key_by_name.R | 18 soilDB-2.6.3/soilDB/R/get_NASIS_table_name_by_purpose.R | 15 soilDB-2.6.3/soilDB/R/get_OSD.R |only soilDB-2.6.3/soilDB/R/get_colors_from_NASIS_db.R | 4 soilDB-2.6.3/soilDB/R/get_colors_from_pedon_db.R | 4 soilDB-2.6.3/soilDB/R/get_component_data_from_NASIS_db.R | 93 +- soilDB-2.6.3/soilDB/R/get_component_from_GDB.R | 2 soilDB-2.6.3/soilDB/R/get_component_from_SDA.R | 2 soilDB-2.6.3/soilDB/R/get_cosoilmoist_from_NASIS.R | 3 soilDB-2.6.3/soilDB/R/get_extended_data_from_NASIS_db.R | 18 soilDB-2.6.3/soilDB/R/get_extended_data_from_pedon_db.R | 6 soilDB-2.6.3/soilDB/R/get_hz_data_from_NASIS_db.R | 2 soilDB-2.6.3/soilDB/R/get_hz_data_from_pedon_db.R | 4 soilDB-2.6.3/soilDB/R/get_lablayer_data_from_NASIS_db.R | 2 soilDB-2.6.3/soilDB/R/get_labpedon_data_from_NASIS_db.R | 2 soilDB-2.6.3/soilDB/R/get_phlabresults_data_from_NASIS_db.R | 75 - soilDB-2.6.3/soilDB/R/get_site_data_from_NASIS_db.R | 2 soilDB-2.6.3/soilDB/R/get_site_data_from_pedon_db.R | 3 soilDB-2.6.3/soilDB/R/get_soilseries_from_NASIS.R | 57 - soilDB-2.6.3/soilDB/R/get_text_notes_from_NASIS_db.R | 2 soilDB-2.6.3/soilDB/R/get_veg_data_from_NASIS_db.R | 6 soilDB-2.6.3/soilDB/R/get_veg_from_AK_Site.R | 5 soilDB-2.6.3/soilDB/R/get_veg_from_MT_veg_db.R | 4 soilDB-2.6.3/soilDB/R/get_veg_from_NPS_PLOTS_db.R | 2 soilDB-2.6.3/soilDB/R/get_veg_other_from_MT_veg_db.R | 4 soilDB-2.6.3/soilDB/R/get_veg_species_from_MT_veg_db.R | 4 soilDB-2.6.3/soilDB/R/mukey-WCS.R | 2 soilDB-2.6.3/soilDB/R/siblings.R | 4 soilDB-2.6.3/soilDB/R/simplifyColorData.R | 69 - soilDB-2.6.3/soilDB/R/soilDB-package.R | 11 soilDB-2.6.3/soilDB/R/taxaExtent.R | 6 soilDB-2.6.3/soilDB/build/partial.rdb |binary soilDB-2.6.3/soilDB/man/ISSR800.wcs.Rd | 2 soilDB-2.6.3/soilDB/man/OSDquery.Rd | 2 soilDB-2.6.3/soilDB/man/ROSETTA.Rd | 13 soilDB-2.6.3/soilDB/man/SCAN_SNOTEL_metadata.Rd | 5 soilDB-2.6.3/soilDB/man/SDA_query.Rd | 2 soilDB-2.6.3/soilDB/man/SDA_spatialQuery.Rd | 18 soilDB-2.6.3/soilDB/man/dbConnectNASIS.Rd | 2 soilDB-2.6.3/soilDB/man/dbQueryNASIS.Rd | 2 soilDB-2.6.3/soilDB/man/fetchGDB.Rd | 2 soilDB-2.6.3/soilDB/man/fetchHenry.Rd | 2 soilDB-2.6.3/soilDB/man/fetchKSSL.Rd | 2 soilDB-2.6.3/soilDB/man/fetchNASIS.Rd | 2 soilDB-2.6.3/soilDB/man/fetchNASISLabData.Rd | 2 soilDB-2.6.3/soilDB/man/fetchNASISWebReport.Rd | 4 soilDB-2.6.3/soilDB/man/fetchOSD.Rd | 2 soilDB-2.6.3/soilDB/man/fetchPedonPC.Rd | 8 soilDB-2.6.3/soilDB/man/fetchSCAN.Rd | 4 soilDB-2.6.3/soilDB/man/fetchSDA.Rd | 2 soilDB-2.6.3/soilDB/man/fetchSDA_spatial.Rd | 32 soilDB-2.6.3/soilDB/man/fetchSoilGrids.Rd | 9 soilDB-2.6.3/soilDB/man/fetchVegdata.Rd | 4 soilDB-2.6.3/soilDB/man/getHzErrorsNASIS.Rd | 4 soilDB-2.6.3/soilDB/man/get_EDIT_ecoclass_by_geoUnit.Rd | 4 soilDB-2.6.3/soilDB/man/get_NASIS_table_key_by_name.Rd |only soilDB-2.6.3/soilDB/man/get_NASIS_table_name_by_purpose.Rd |only soilDB-2.6.3/soilDB/man/get_NOAA_GHCND.Rd | 2 soilDB-2.6.3/soilDB/man/get_NOAA_stations_nearXY.Rd | 2 soilDB-2.6.3/soilDB/man/get_OSD.Rd |only soilDB-2.6.3/soilDB/man/get_SDA_interpretation.Rd | 25 soilDB-2.6.3/soilDB/man/get_SDA_property.Rd | 43 - soilDB-2.6.3/soilDB/man/get_colors_from_NASIS_db.Rd | 5 soilDB-2.6.3/soilDB/man/get_colors_from_pedon_db.Rd | 5 soilDB-2.6.3/soilDB/man/get_comonth_from_NASIS_db.Rd | 7 soilDB-2.6.3/soilDB/man/get_component_data_from_NASIS_db.Rd | 6 soilDB-2.6.3/soilDB/man/get_cosoilmoist_from_NASIS.Rd | 5 soilDB-2.6.3/soilDB/man/get_extended_data_from_NASIS_db.Rd | 4 soilDB-2.6.3/soilDB/man/get_extended_data_from_pedon_db.Rd | 7 soilDB-2.6.3/soilDB/man/get_hz_data_from_NASIS_db.Rd | 2 soilDB-2.6.3/soilDB/man/get_hz_data_from_pedon_db.Rd | 5 soilDB-2.6.3/soilDB/man/get_lablayer_data_from_NASIS_db.Rd | 2 soilDB-2.6.3/soilDB/man/get_labpedon_data_from_NASIS_db.Rd | 2 soilDB-2.6.3/soilDB/man/get_site_data_from_NASIS_db.Rd | 2 soilDB-2.6.3/soilDB/man/get_site_data_from_pedon_db.Rd | 5 soilDB-2.6.3/soilDB/man/get_soilseries_from_NASIS.Rd | 5 soilDB-2.6.3/soilDB/man/get_text_notes_from_NASIS_db.Rd | 4 soilDB-2.6.3/soilDB/man/get_veg_data_from_NASIS_db.Rd | 7 soilDB-2.6.3/soilDB/man/get_veg_from_AK_Site.Rd | 7 soilDB-2.6.3/soilDB/man/get_veg_from_MT_veg_db.Rd | 5 soilDB-2.6.3/soilDB/man/get_veg_from_NPS_PLOTS_db.Rd | 2 soilDB-2.6.3/soilDB/man/get_veg_other_from_MT_veg_db.Rd | 5 soilDB-2.6.3/soilDB/man/get_veg_species_from_MT_veg_db.Rd | 5 soilDB-2.6.3/soilDB/man/make_EDIT_service_URL.Rd | 6 soilDB-2.6.3/soilDB/man/mukey.wcs.Rd | 2 soilDB-2.6.3/soilDB/man/siblings.Rd | 4 soilDB-2.6.3/soilDB/man/soilDB-package.Rd | 7 soilDB-2.6.3/soilDB/man/taxaExtent.Rd | 6 soilDB-2.6.3/soilDB/tests/testthat/test-OSDquery.R | 2 soilDB-2.6.3/soilDB/tests/testthat/test-ROSETTA.R | 23 soilDB-2.6.3/soilDB/tests/testthat/test-SDA_interpretations.R | 28 soilDB-2.6.3/soilDB/tests/testthat/test-SDA_properties.R | 99 ++ soilDB-2.6.3/soilDB/tests/testthat/test-SDA_query.R | 36 soilDB-2.6.3/soilDB/tests/testthat/test-fetchNASIS.R | 19 soilDB-2.6.3/soilDB/tests/testthat/test-fetchSDA_component.R | 4 soilDB-2.6.3/soilDB/tests/testthat/test-fetchSDA_spatial.R | 2 soilDB-2.6.3/soilDB/tests/testthat/test-fetchSoilGrids.R | 5 soilDB-2.6.3/soilDB/tests/testthat/test-get_OSD.R |only 135 files changed, 1434 insertions(+), 1021 deletions(-)
Title: Querying and Managing Large Biodiversity Occurrence Datasets
Description: Facilitates the gathering of biodiversity occurrence data
from disparate sources. Metadata is managed throughout the process to facilitate
reporting and enhanced ability to repeat analyses.
Author: Hannah L. Owens [aut, cre] (<https://orcid.org/0000-0003-0071-1745>),
Cory Merow [aut] (<https://orcid.org/0000-0003-0561-053X>),
Brian Maitner [aut] (<https://orcid.org/0000-0002-2118-9880>),
Jamie M. Kass [aut] (<https://orcid.org/0000-0002-9432-895X>),
Vijay Barve [aut] (<https://orcid.org/0000-0002-4852-2567>),
Robert P. Guralnick [aut] (<https://orcid.org/0000-0001-6682-1504>)
Maintainer: Hannah L. Owens <hannah.owens@gmail.com>
Diff between occCite versions 0.4.8 dated 2021-06-11 and 0.4.9 dated 2021-07-23
occCite-0.4.8/occCite/inst/extdata/Istiompax_indica |only occCite-0.4.8/occCite/inst/extdata/Kajikia_albida |only occCite-0.4.8/occCite/inst/extdata/Kajikia_audax |only occCite-0.4.9/occCite/DESCRIPTION | 15 occCite-0.4.9/occCite/MD5 | 31 - occCite-0.4.9/occCite/NEWS.md | 6 occCite-0.4.9/occCite/R/GBIFtableCleanup.R | 5 occCite-0.4.9/occCite/R/gbifRetriever.R | 9 occCite-0.4.9/occCite/R/occQuery.R | 8 occCite-0.4.9/occCite/R/occSum.R | 46 +- occCite-0.4.9/occCite/R/studyTaxonList.R | 4 occCite-0.4.9/occCite/R/tabGBIF.R | 11 occCite-0.4.9/occCite/inst/doc/Advanced.R | 6 occCite-0.4.9/occCite/inst/doc/Advanced.Rmd | 6 occCite-0.4.9/occCite/inst/doc/Advanced.html | 316 ++++++-------------- occCite-0.4.9/occCite/inst/doc/Simple.html | 12 occCite-0.4.9/occCite/man/studyTaxonList.Rd | 7 occCite-0.4.9/occCite/vignettes/Advanced.Rmd | 6 18 files changed, 198 insertions(+), 290 deletions(-)
Title: Configural Frequencies Analysis Using Log-Linear Modeling
Description: Offers several functions for Configural Frequencies
Analysis (CFA), which is a useful statistical tool for the analysis of
multiway contingency tables. CFA was introduced by G. A. Lienert as
'Konfigurations Frequenz Analyse - KFA'. Lienert, G. A. (1971).
Die Konfigurationsfrequenzanalyse: I. Ein neuer Weg zu Typen und Syndromen.
Zeitschrift für Klinische Psychologie und Psychotherapie, 19(2), 99–115.
Author: Joerg-Henrik Heine, R.W. Alexandrowicz (function stirling_cfa() )
and some package testing by Mark Stemmler
Maintainer: Joerg-Henrik Heine <jhheine@googlemail.com>
Diff between confreq versions 1.5.6 dated 2021-06-20 and 1.5.6-4 dated 2021-07-23
DESCRIPTION | 9 +- MD5 | 92 +++++++++++++++-------------- NAMESPACE | 14 ++-- NEWS | 16 +++++ R/CFA.R | 20 +++--- R/S2CFA.R | 12 +-- R/binomial_test_cfa.R | 1 R/chi_local_test_cfa.R | 1 R/confreq-package.R | 9 +- R/dat2cov.R | 4 - R/dat2fre.R | 2 R/design_cfg_cfa.R | 2 R/df_des_cfa.R | 1 R/expected_cfa.R | 1 R/expected_margin_cfa.R | 1 R/fre2dat.R | 139 ++++++++++++++++++++++----------------------- R/fre2tab.R | 5 - R/ftab.R | 1 R/lr.R | 1 R/plot.CFA.R | 98 ++++++------------------------- R/plot.S2CFA.R |only R/pos_cfg_cfa.R | 63 ++++++++++---------- R/stirling_cfa.r | 1 R/summary.CFA.R | 48 ++++++--------- R/summary.S2CFA.R | 104 ++++++++++++++++++++++++++++++--- R/z_tests_cfa.R | 1 man/CFA.Rd | 19 +++--- man/S2CFA.Rd | 7 +- man/binomial_test_cfa.Rd | 1 man/chi_local_test_cfa.Rd | 1 man/confreq-package.Rd | 3 man/dat2cov.Rd | 3 man/dat2fre.Rd | 1 man/design_cfg_cfa.Rd | 5 - man/df_des_cfa.Rd | 4 - man/expected_cfa.Rd | 1 man/expected_margin_cfa.Rd | 1 man/fre2dat.Rd | 3 man/fre2tab.Rd | 11 ++- man/ftab.Rd | 1 man/lr.Rd | 1 man/plot.CFA.Rd | 15 +++- man/plot.S2CFA.Rd |only man/pos_cfg_cfa.Rd | 1 man/stirling_cfa.Rd | 3 man/summary.CFA.Rd | 18 ++++- man/summary.S2CFA.Rd | 30 +++++++++ man/z_tests_cfa.Rd | 1 48 files changed, 447 insertions(+), 329 deletions(-)
Title: Pacote Para Analise Multivariada
Description: Package with multivariate analysis methodologies for experiment evaluation.
The package estimates dissimilarity measures, builds dendrograms, obtains MANOVA,
principal components, canonical variables, etc. (Pacote com metodologias de analise
multivariada para avaliação de experimentos. O pacote estima medidas de dissimilaridade,
construi de dendogramas, obtem a MANOVA, componentes principais, variáveis canônicas, etc.)
Author: Alcinei Mistico Azevedo [aut, cre]
(<https://orcid.org/0000-0001-5196-0851>)
Maintainer: Alcinei Mistico Azevedo <alcineimistico@hotmail.com>
Diff between MultivariateAnalysis versions 0.2.0 dated 2021-07-21 and 0.3.0 dated 2021-07-23
MultivariateAnalysis-0.2.0/MultivariateAnalysis/R/zzz.R |only MultivariateAnalysis-0.3.0/MultivariateAnalysis/DESCRIPTION | 8 - MultivariateAnalysis-0.3.0/MultivariateAnalysis/MD5 | 27 +++--- MultivariateAnalysis-0.3.0/MultivariateAnalysis/NAMESPACE | 4 MultivariateAnalysis-0.3.0/MultivariateAnalysis/NEWS.md | 10 ++ MultivariateAnalysis-0.3.0/MultivariateAnalysis/R/ComponentesPrincipais.Misto.R |only MultivariateAnalysis-0.3.0/MultivariateAnalysis/R/CompontesPrincipais.R | 6 - MultivariateAnalysis-0.3.0/MultivariateAnalysis/R/CorrelacaoMantel.R | 2 MultivariateAnalysis-0.3.0/MultivariateAnalysis/R/Dados.Misto.R | 2 MultivariateAnalysis-0.3.0/MultivariateAnalysis/R/Dendograma.R | 35 ++++++- MultivariateAnalysis-0.3.0/MultivariateAnalysis/R/Tocher.R | 45 +++++++++- MultivariateAnalysis-0.3.0/MultivariateAnalysis/data/Dados.Misto.txt | 13 +- MultivariateAnalysis-0.3.0/MultivariateAnalysis/man/ComponentesPrincipais.Misto.Rd |only MultivariateAnalysis-0.3.0/MultivariateAnalysis/man/ComponentesPrincipais.Rd | 6 - MultivariateAnalysis-0.3.0/MultivariateAnalysis/man/Dados.Misto.Rd | 2 MultivariateAnalysis-0.3.0/MultivariateAnalysis/man/Dendograma.Rd | 7 + 16 files changed, 123 insertions(+), 44 deletions(-)
More information about MultivariateAnalysis at CRAN
Permanent link
Title: Sample Size Calculation in Hierarchical 2x2 Factorial Trials
Description: Implements the sample size methods for hierarchical 2x2 factorial trials under two choices of effect estimands and a series of hypothesis tests proposed in "Sample size calculation in hierarchical 2x2 factorial trials with unequal cluster sizes" (under review), and provides the table and plot generators for the sample size estimations.
Author: Zizhong Tian [aut, cre],
Denise Esserman [aut],
Guangyu Tong [aut],
Fan Li [aut]
Maintainer: Zizhong Tian <zizhong.tian@yale.edu>
Diff between H2x2Factorial versions 1.1.0 dated 2021-04-15 and 2.0.0 dated 2021-07-23
H2x2Factorial-1.1.0/H2x2Factorial/man/figures |only H2x2Factorial-2.0.0/H2x2Factorial/DESCRIPTION | 11 H2x2Factorial-2.0.0/H2x2Factorial/MD5 | 21 H2x2Factorial-2.0.0/H2x2Factorial/NAMESPACE | 1 H2x2Factorial-2.0.0/H2x2Factorial/R/calc.H2x2Factorial.R | 494 ++++++-- H2x2Factorial-2.0.0/H2x2Factorial/R/graph.H2x2Factorial.R | 236 +++- H2x2Factorial-2.0.0/H2x2Factorial/R/helpers.R | 163 ++ H2x2Factorial-2.0.0/H2x2Factorial/R/table.H2x2Factorial.R | 614 +++++++---- H2x2Factorial-2.0.0/H2x2Factorial/README.md | 27 H2x2Factorial-2.0.0/H2x2Factorial/man/calc.H2x2Factorial.Rd | 43 H2x2Factorial-2.0.0/H2x2Factorial/man/graph.H2x2Factorial.Rd | 7 H2x2Factorial-2.0.0/H2x2Factorial/man/table.H2x2Factorial.Rd | 9 12 files changed, 1186 insertions(+), 440 deletions(-)
Title: High Dimensional Data Visualization
Description: It provides materials (i.e. 'serial axes' objects, Andrew's plot, various glyphs for scatter plot) to visualize high dimensional data.
Author: Zehao Xu [aut, cre],
R. Wayne Oldford [aut]
Maintainer: Zehao Xu <z267xu@uwaterloo.ca>
Diff between ggmulti versions 1.0.3 dated 2021-05-28 and 1.0.4 dated 2021-07-23
DESCRIPTION | 7 - MD5 | 65 +++++++------ NAMESPACE | 3 R/add-serialaxes-layers.R | 16 ++- R/coord-serialaxes.R | 54 +++++------ R/coord_radial.R | 40 +++++--- R/data.R |only R/deprecated_functions.R | 37 +++++++ R/geom-image-glyph.R | 189 ++++++++++++++++++++++----------------- R/geom-polygon-glyph.R | 32 ++++-- R/geom-serialaxes-glyph.R | 169 ++++++++++++++++++++++++++++++++-- R/geom-serialaxes-hist.R | 27 +++-- R/geom-serialaxes.R | 34 ++++--- R/polygon-chars.R | 2 R/serialaxes-setup.R | 15 ++- R/unexported_ggplot2_functions.R | 23 +++- R/unexported_loon_functions.R | 60 ++---------- R/utils-geom.R | 130 -------------------------- data |only inst/doc/glyph.R | 2 inst/doc/glyph.Rmd | 2 inst/doc/glyph.html | 8 - inst/doc/highDim.html | 4 inst/doc/histogram-density-.html | 4 man/Geom-ggproto.Rd | 20 +++- man/NBAstats2021.Rd |only man/coord_radial.Rd | 25 ++++- man/coord_serialaxes.Rd | 46 +++++---- man/geom_image_glyph.Rd | 45 +++++++-- man/geom_polygon_glyph.Rd | 14 ++ man/geom_serialaxes.Rd | 34 ++++--- man/geom_serialaxes_glyph.Rd | 13 ++ man/geom_serialaxes_hist.Rd | 27 +++-- man/polygon_glyph.Rd | 2 vignettes/glyph.Rmd | 2 35 files changed, 685 insertions(+), 466 deletions(-)
Title: Point Forecast Reconciliation
Description: Classical (bottom-up and top-down), optimal and heuristic combination forecast
reconciliation procedures for cross-sectional, temporal, and cross-temporal linearly
constrained time series.
Author: Daniele Girolimetto [aut, cre, fnd],
Tommaso Di Fonzo [aut, fnd]
Maintainer: Daniele Girolimetto <daniele.girolimetto@phd.unipd.it>
Diff between FoReco versions 0.2.0 dated 2021-05-21 and 0.2.1 dated 2021-07-23
DESCRIPTION | 6 +-- MD5 | 70 ++++++++++++++++++++--------------------- NAMESPACE | 1 NEWS.md | 6 +++ R/FoReco-package.R | 3 + R/commat.R | 16 +++++---- R/cstrec.R | 2 - R/ctf_tools.R | 6 +-- R/htsrec.R | 1 R/iterec.R | 2 - R/lccrec.R | 39 +++++++++++++++------- R/oct_bounds.R | 6 +-- R/octrec.R | 2 - R/reco.R | 6 +-- R/score_index.R | 1 R/tcsrec.R | 2 - R/thf_tools.R | 2 - R/thfrec.R | 1 R/ut2c.R | 8 ++-- build/FoReco.pdf |binary build/vignette.rds |binary inst/CITATION | 6 +-- inst/doc/FoReco_package.html | 5 +- inst/doc/accuracy_indices.html | 5 +- man/commat.Rd | 13 ++++--- man/cstrec.Rd | 2 - man/ctf_tools.Rd | 6 +-- man/htsrec.Rd | 1 man/iterec.Rd | 2 - man/lccrec.Rd | 12 +++++-- man/oct_bounds.Rd | 6 +-- man/octrec.Rd | 2 - man/tcsrec.Rd | 2 - man/thf_tools.Rd | 2 - man/thfrec.Rd | 1 man/ut2c.Rd | 8 ++-- 36 files changed, 146 insertions(+), 107 deletions(-)
Title: Bayesian Quantile Regression for Ordinal Models
Description: Provides an estimation technique for Bayesian quantile
regression in ordinal models. Two algorithms are considered - one
for an ordinal model with three outcomes and the other for an ordinal
model with more than 3 outcomes. It further provides model performance
criteria and trace plots for Markov chain Monte Carlo (MCMC) draws.
Rahman, M. A. (2016) <doi:10.1214/15-BA939>.
Greenberg, E. (2012) <doi:10.1017/CBO9781139058414>.
Spiegelhalter, D. J., Best, N. G., Carlin B. P. and Linde A. (2002) <doi:10.1111/1467-9868.00353>.
Author: Dr. Mohammad Arshad Rahman Developer [aut],
Prajual Maheshwari [cre]
Maintainer: Prajual Maheshwari <prajual1391@gmail.com>
Diff between bqror versions 0.1.5 dated 2021-07-04 and 0.1.6 dated 2021-07-23
DESCRIPTION | 6 +- MD5 | 8 ++- R/data.R | 90 ++++++++++++++++++++++++++++++++++++++ data/Educational_Attainment.RData |only data/Policy_Opinion.RData |only man/Educational_Attainment.Rd |only man/Policy_Opinion.Rd |only 7 files changed, 99 insertions(+), 5 deletions(-)
Title: Create Blogs and Websites with R Markdown
Description: Write blog posts and web pages in R Markdown. This package supports
the static site generator 'Hugo' (<https://gohugo.io>) best, and it also
supports 'Jekyll' (<https://jekyllrb.com>) and 'Hexo' (<https://hexo.io>).
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Christophe Dervieux [aut] (<https://orcid.org/0000-0003-4474-2498>),
Alison Presmanes Hill [aut] (<https://orcid.org/0000-0002-8082-1890>),
Amber Thomas [ctb],
Beilei Bian [ctb],
Brandon Greenwell [ctb],
Brian Barkley [ctb],
Deependra Dhakal [ctb],
Eric Nantz [ctb],
Forest Fang [ctb],
Garrick Aden-Buie [ctb],
Hiroaki Yutani [ctb],
Ian Lyttle [ctb],
Jake Barlow [ctb],
James Balamuta [ctb],
JJ Allaire [ctb],
Jon Calder [ctb],
Jozef Hajnala [ctb],
Juan Manuel Vazquez [ctb],
Kevin Ushey [ctb],
Leonardo Collado-Torres [ctb],
Maëlle Salmon [ctb],
Maria Paula Caldas [ctb],
Nicolas Roelandt [ctb],
Oliver Madsen [ctb],
Raniere Silva [ctb],
TC Zhang [ctb],
Xianying Tan [ctb],
RStudio, PBC [cph]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between blogdown versions 1.3 dated 2021-04-14 and 1.4 dated 2021-07-23
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/check.R | 34 ++++++++++++++++++++++++++++++---- R/hugo.R | 20 +++++++++++++++----- R/install.R | 20 +++++++++++--------- R/render.R | 4 +--- R/utils.R | 11 ++++++++--- man/install_hugo.Rd | 5 ++++- tests/testit/test-utils.R | 23 +++++++++++++++++++++++ 9 files changed, 104 insertions(+), 37 deletions(-)
Title: A 'Bootstrap 4' Version of 'shinydashboard'
Description: Make 'Bootstrap 4' Shiny dashboards. Use the full power
of 'AdminLTE3', a dashboard template built on top of 'Bootstrap 4'
<https://github.com/ColorlibHQ/AdminLTE>.
Author: David Granjon [aut, cre],
RinteRface [cph],
Almasaeed Studio [ctb, cph] (AdminLTE3 theme for Bootstrap 4),
Winston Chang [ctb, cph] (Utils functions from shinydashboard),
Thomas Park [ctb, cph] (Bootswatch Sketchy theme CSS)
Maintainer: David Granjon <dgranjon@ymail.com>
Diff between bs4Dash versions 2.0.1 dated 2021-07-16 and 2.0.2 dated 2021-07-23
bs4Dash-2.0.1/bs4Dash/inst/bs4Dash-2.0.1 |only bs4Dash-2.0.2/bs4Dash/DESCRIPTION | 8 +- bs4Dash-2.0.2/bs4Dash/MD5 | 63 +++++++++---------- bs4Dash-2.0.2/bs4Dash/NEWS.md | 9 ++ bs4Dash-2.0.2/bs4Dash/R/useful-items.R | 4 - bs4Dash-2.0.2/bs4Dash/R/utils.R | 44 +++++++++++++ bs4Dash-2.0.2/bs4Dash/build/bs4Dash.pdf |binary bs4Dash-2.0.2/bs4Dash/inst/bs4Dash-2.0.2 |only bs4Dash-2.0.2/bs4Dash/inst/doc/bs4Dash.R | 3 bs4Dash-2.0.2/bs4Dash/inst/doc/bs4Dash.Rmd | 15 ---- bs4Dash-2.0.2/bs4Dash/inst/doc/bs4Dash.html | 16 ---- bs4Dash-2.0.2/bs4Dash/inst/doc/css-preloader.R | 3 bs4Dash-2.0.2/bs4Dash/inst/doc/css-preloader.Rmd | 10 --- bs4Dash-2.0.2/bs4Dash/inst/doc/css-preloader.html | 16 ---- bs4Dash-2.0.2/bs4Dash/inst/doc/extra-elements.R | 6 + bs4Dash-2.0.2/bs4Dash/inst/doc/extra-elements.Rmd | 21 +----- bs4Dash-2.0.2/bs4Dash/inst/doc/extra-elements.html | 28 -------- bs4Dash-2.0.2/bs4Dash/inst/doc/improved-boxes.R | 15 ++++ bs4Dash-2.0.2/bs4Dash/inst/doc/improved-boxes.Rmd | 55 ++++------------ bs4Dash-2.0.2/bs4Dash/inst/doc/improved-boxes.html | 66 -------------------- bs4Dash-2.0.2/bs4Dash/inst/doc/more-skins.R | 9 ++ bs4Dash-2.0.2/bs4Dash/inst/doc/more-skins.Rmd | 24 ++----- bs4Dash-2.0.2/bs4Dash/inst/doc/more-skins.html | 28 -------- bs4Dash-2.0.2/bs4Dash/inst/doc/step-by-step.html | 4 - bs4Dash-2.0.2/bs4Dash/inst/marvel-devices-css-1.0.0 |only bs4Dash-2.0.2/bs4Dash/man/userMessage.Rd | 2 bs4Dash-2.0.2/bs4Dash/vignettes/bs4Dash.Rmd | 15 ---- bs4Dash-2.0.2/bs4Dash/vignettes/css-preloader.Rmd | 10 --- bs4Dash-2.0.2/bs4Dash/vignettes/extra-elements.Rmd | 21 +----- bs4Dash-2.0.2/bs4Dash/vignettes/improved-boxes.Rmd | 55 ++++------------ bs4Dash-2.0.2/bs4Dash/vignettes/more-skins.Rmd | 24 ++----- 31 files changed, 211 insertions(+), 363 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-07-20 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-07-20 1.0-1
Title: Simple Data Frames
Description: Provides a 'tbl_df' class (the 'tibble') that
provides stricter checking and better formatting than the traditional
data frame.
Author: Kirill Müller [aut, cre],
Hadley Wickham [aut],
Romain Francois [ctb],
Jennifer Bryan [ctb],
RStudio [cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between tibble versions 3.1.2 dated 2021-05-16 and 3.1.3 dated 2021-07-23
DESCRIPTION | 6 MD5 | 130 ++--- NAMESPACE | 7 NEWS.md | 22 R/add.R | 2 R/as_tibble.R | 29 - R/enframe.R | 42 + R/names.R | 8 R/new.R | 11 R/subsetting-matrix.R | 4 R/subsetting.R | 28 + R/tbl_sum.R | 7 R/tibble-package.R | 4 R/tibble.R | 22 R/tribble.R | 8 R/utils-msg-format.R | 13 build/vignette.rds |binary inst/doc/formats.html | 35 - inst/doc/invariants.R | 2 inst/doc/invariants.html | 288 ++++++------- inst/doc/tibble.html | 149 +++--- inst/doc/types.html | 7 man/as_tibble.Rd | 4 man/enframe.Rd | 6 man/reexports.Rd | 3 src/coerce.c | 16 src/init.c | 1 src/tibble.h | 1 tests/testthat/_snaps/as_tibble.md | 4 tests/testthat/_snaps/enframe.md | 49 ++ tests/testthat/_snaps/invariants.md | 13 tests/testthat/_snaps/msg.md | 12 tests/testthat/_snaps/subsetting.md | 65 ++ tests/testthat/_snaps/utils-msg-format.md | 73 +++ tests/testthat/helper-testthat.R | 2 tests/testthat/helper-zzz.R | 5 tests/testthat/test-as_tibble.R | 54 +- tests/testthat/test-enframe.R | 25 - tests/testthat/test-msg.R | 5 tests/testthat/test-subsetting.R | 49 ++ tests/testthat/test-tibble.R | 5 tests/testthat/test-utils-msg-format.R | 11 tests/testthat/test-zzz-enframe.R | 2 tests/testthat/zzz-output/trunc_mat/POSIXlt-8-60.txt | 2 tests/testthat/zzz-output/trunc_mat/all--30.txt | 2 tests/testthat/zzz-output/trunc_mat/all--300.txt | 2 tests/testthat/zzz-output/trunc_mat/all-1-30-0.txt | 2 tests/testthat/zzz-output/trunc_mat/all-1-30-2.txt | 2 tests/testthat/zzz-output/trunc_mat/iris--70.txt | 2 tests/testthat/zzz-output/trunc_mat/iris-3-5.txt | 2 tests/testthat/zzz-output/trunc_mat/iris-5-30.txt | 2 tests/testthat/zzz-output/trunc_mat/iris-inf-30.txt | 2 tests/testthat/zzz-output/trunc_mat/iris-neg-30.txt | 2 tests/testthat/zzz-output/trunc_mat/iris_10_unk-10-70.txt | 2 tests/testthat/zzz-output/trunc_mat/iris_11_unk-10-70.txt | 2 tests/testthat/zzz-output/trunc_mat/iris_9_unk-10-70.txt | 2 tests/testthat/zzz-output/trunc_mat/iris_unk-10-70.txt | 2 tests/testthat/zzz-output/trunc_mat/long-5-30.txt | 2 tests/testthat/zzz-output/trunc_mat/long_unk-5-30.txt | 2 tests/testthat/zzz-output/trunc_mat/mtcars-8-30.txt | 2 tests/testthat/zzz-output/trunc_mat/non-syntactic.txt | 2 tests/testthat/zzz-output/trunc_mat/wide-8-60.txt | 2 tests/testthat/zzz-output/trunc_mat/zero-cols_unk-5-30.txt | 2 tests/testthat/zzz-output/trunc_mat/zero-rows_unk-5-30.txt | 2 tests/testthat/zzz-output/trunc_mat/zero_cols-5-30.txt | 2 tests/testthat/zzz-output/trunc_mat/zero_rows--30.txt | 2 66 files changed, 812 insertions(+), 463 deletions(-)
Title: 'NoSQL' Database Connector
Description: Simplified document database manipulation and analysis,
including support for many 'NoSQL' databases, including document
databases ('Elasticsearch', 'CouchDB', 'MongoDB'),
'key-value' databases ('Redis'), and (with limitations)
SQLite/json1.
Author: Ralf Herold [aut, cre] (<https://orcid.org/0000-0002-8148-6748>),
Scott Chamberlain [aut] (<https://orcid.org/0000-0003-1444-9135>),
Rich FitzJohn [aut],
Jeroen Ooms [aut]
Maintainer: Ralf Herold <ralf.herold@mailbox.org>
Diff between nodbi versions 0.4.2 dated 2021-01-14 and 0.4.3 dated 2021-07-23
DESCRIPTION | 30 +- MD5 | 63 ++-- NAMESPACE | 1 NEWS.md | 15 + R/create.R | 319 ++++++++++----------- R/delete.R | 97 +++--- R/exists.R | 56 +-- R/get.R | 74 ++--- R/nodbi-package.R | 150 +++++++++- R/query.R | 620 +++++++++++++++++++++++------------------- R/src_couchdb.R | 6 R/src_elasticsearch.R | 2 R/src_mongo.R | 27 + R/src_redis.R | 2 R/src_sqlite.R | 81 ++--- R/update.R | 313 +++++++++++---------- R/zzz.R | 41 ++ inst/ignore/cleanup.R | 2 inst/ignore/create-pulled.R | 2 man/docdb_create.Rd | 4 man/docdb_delete.Rd | 15 - man/docdb_exists.Rd | 4 man/docdb_get.Rd | 8 man/docdb_query.Rd | 30 +- man/docdb_update.Rd | 13 man/mapdata.Rd |only man/src_mongo.Rd | 12 man/src_sqlite.Rd | 10 tests/testthat/helper-nodbi.R | 4 tests/testthat/test-couchdb.R | 27 - tests/testthat/test-mongodb.R | 110 +++++-- tests/testthat/test-redis.R | 6 tests/testthat/test-sqlite.R | 390 +++++++++++++++++++------- 33 files changed, 1543 insertions(+), 991 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-02-02 0.2-1.2
2010-08-01 0.2-1.1
2009-11-03 0.1-4
2009-01-11 0.1-2
2008-12-30 0.1-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-03 1.0.6
2020-06-03 1.0.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-06-14 1.5.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-10-21 1.3.2
2015-12-23 1.3.1
2015-12-22 1.3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-07-08 0.2
Title: MR Spectroscopy Analysis Tools
Description: Tools for reading, visualising and processing Magnetic Resonance
Spectroscopy data. The package includes methods for spectral fitting: Wilson
(2021) <DOI:10.1002/mrm.28385> and spectral alignment: Wilson (2018)
<DOI:10.1002/mrm.27605>.
Author: Martin Wilson [cre, aut] (<https://orcid.org/0000-0002-2089-3956>),
Yong Wang [ctb],
John Muschelli [ctb]
Maintainer: Martin Wilson <martin@pipegrep.co.uk>
Diff between spant versions 1.13.0 dated 2021-06-09 and 1.14.0 dated 2021-07-23
spant-1.13.0/spant/man/norm_mrs.Rd |only spant-1.13.0/spant/man/scale_mrs.Rd |only spant-1.14.0/spant/DESCRIPTION | 8 spant-1.14.0/spant/MD5 | 661 - spant-1.14.0/spant/NAMESPACE | 577 spant-1.14.0/spant/NEWS.md | 580 spant-1.14.0/spant/R/abfit.R | 2730 ++-- spant-1.14.0/spant/R/amp_scaling.R | 522 spant-1.14.0/spant/R/basis_set.R | 659 - spant-1.14.0/spant/R/benchmark.R | 84 spant-1.14.0/spant/R/data.R | 4 spant-1.14.0/spant/R/dicom_reader.R | 300 spant-1.14.0/spant/R/fit_display.R | 902 - spant-1.14.0/spant/R/fitting.R | 1626 +- spant-1.14.0/spant/R/gsl_functions.R | 454 spant-1.14.0/spant/R/image_reg.R | 988 - spant-1.14.0/spant/R/interactive_plotting.R | 988 - spant-1.14.0/spant/R/mol_parameters.R | 2547 ++-- spant-1.14.0/spant/R/mrs_data_display.R | 1477 +- spant-1.14.0/spant/R/mrs_data_io.R | 714 - spant-1.14.0/spant/R/mrs_data_proc.R | 6759 +++++------ spant-1.14.0/spant/R/mrs_read_dicom.R | 470 spant-1.14.0/spant/R/mrs_read_ima.R | 140 spant-1.14.0/spant/R/mrs_read_lcm_raw.R | 76 spant-1.14.0/spant/R/mrs_read_list_data.R | 198 spant-1.14.0/spant/R/mrs_read_nifti.R | 185 spant-1.14.0/spant/R/mrs_read_paravis.R | 136 spant-1.14.0/spant/R/mrs_read_pfile.R | 382 spant-1.14.0/spant/R/mrs_read_rda.R | 192 spant-1.14.0/spant/R/mrs_read_spar_sdat.R | 362 spant-1.14.0/spant/R/mrs_read_twix.R | 1044 - spant-1.14.0/spant/R/mrs_read_varian.R | 146 spant-1.14.0/spant/R/mrs_write_nifti.R | 122 spant-1.14.0/spant/R/pnnls.R | 134 spant-1.14.0/spant/R/precomp.R | 152 spant-1.14.0/spant/R/pulse_sequences.R | 1070 - spant-1.14.0/spant/R/pulse_shapes.R | 24 spant-1.14.0/spant/R/qm_simulation.R | 998 - spant-1.14.0/spant/R/rats.R | 345 spant-1.14.0/spant/R/spant.R | 386 spant-1.14.0/spant/R/svs_batch_fit.R | 462 spant-1.14.0/spant/R/tdsr.R | 144 spant-1.14.0/spant/R/utils.R | 1022 - spant-1.14.0/spant/R/varpro.R | 502 spant-1.14.0/spant/R/varpro_3_para.R | 460 spant-1.14.0/spant/build/vignette.rds |binary spant-1.14.0/spant/inst/WORDLIST | 380 spant-1.14.0/spant/inst/doc/abfit-baseline-opts.R | 106 spant-1.14.0/spant/inst/doc/abfit-baseline-opts.Rmd | 184 spant-1.14.0/spant/inst/doc/abfit-baseline-opts.html | 427 spant-1.14.0/spant/inst/doc/spant-basis-simulation.R | 84 spant-1.14.0/spant/inst/doc/spant-basis-simulation.Rmd | 146 spant-1.14.0/spant/inst/doc/spant-basis-simulation.html | 389 spant-1.14.0/spant/inst/doc/spant-intro.R | 108 spant-1.14.0/spant/inst/doc/spant-intro.Rmd | 186 spant-1.14.0/spant/inst/doc/spant-intro.html | 619 - spant-1.14.0/spant/inst/doc/spant-metabolite-simulation.R | 150 spant-1.14.0/spant/inst/doc/spant-metabolite-simulation.Rmd | 248 spant-1.14.0/spant/inst/doc/spant-metabolite-simulation.html | 597 spant-1.14.0/spant/inst/doc/spant-preprocessing.R | 92 spant-1.14.0/spant/inst/doc/spant-preprocessing.Rmd | 152 spant-1.14.0/spant/inst/doc/spant-preprocessing.html | 395 spant-1.14.0/spant/inst/reports/mpress_gaba.Rmd | 86 spant-1.14.0/spant/man/Arg.mrs_data.Rd | 34 spant-1.14.0/spant/man/Conj.mrs_data.Rd | 34 spant-1.14.0/spant/man/Im.mrs_data.Rd | 34 spant-1.14.0/spant/man/Mod.mrs_data.Rd | 34 spant-1.14.0/spant/man/Ncoils.Rd | 28 spant-1.14.0/spant/man/Ndyns.Rd | 28 spant-1.14.0/spant/man/Npts.Rd | 34 spant-1.14.0/spant/man/Nspec.Rd | 28 spant-1.14.0/spant/man/Nx.Rd | 28 spant-1.14.0/spant/man/Ny.Rd | 28 spant-1.14.0/spant/man/Nz.Rd | 28 spant-1.14.0/spant/man/Re.mrs_data.Rd | 34 spant-1.14.0/spant/man/abfit_opts.Rd | 332 spant-1.14.0/spant/man/abfit_opts_v1_9_0.Rd | 38 spant-1.14.0/spant/man/acquire.Rd | 46 spant-1.14.0/spant/man/align.Rd | 74 spant-1.14.0/spant/man/apodise_xy.Rd | 42 spant-1.14.0/spant/man/append_basis.Rd | 38 spant-1.14.0/spant/man/append_coils.Rd | 38 spant-1.14.0/spant/man/append_dyns.Rd | 38 spant-1.14.0/spant/man/apply_axes.Rd | 60 spant-1.14.0/spant/man/apply_mrs.Rd | 44 spant-1.14.0/spant/man/apply_pvc.Rd | 52 spant-1.14.0/spant/man/array2mrs_data.Rd | 72 spant-1.14.0/spant/man/auto_phase.Rd | 50 spant-1.14.0/spant/man/back_extrap_ar.Rd | 74 spant-1.14.0/spant/man/basis2mrs_data.Rd | 54 spant-1.14.0/spant/man/bbase.Rd | 46 spant-1.14.0/spant/man/bc_als.Rd | 42 spant-1.14.0/spant/man/bc_constant.Rd | 40 spant-1.14.0/spant/man/beta2lw.Rd | 38 spant-1.14.0/spant/man/calc_coil_noise_cor.Rd | 34 spant-1.14.0/spant/man/calc_coil_noise_sd.Rd | 34 spant-1.14.0/spant/man/calc_ed_from_lambda.Rd | 42 spant-1.14.0/spant/man/calc_peak_info_vec.Rd | 40 spant-1.14.0/spant/man/calc_sd_poly.Rd | 42 spant-1.14.0/spant/man/calc_spec_diff.Rd | 42 spant-1.14.0/spant/man/calc_spec_snr.Rd | 88 spant-1.14.0/spant/man/check_lcm.Rd | 22 spant-1.14.0/spant/man/check_tqn.Rd | 22 spant-1.14.0/spant/man/circ_mask.Rd | 42 spant-1.14.0/spant/man/collapse_to_dyns.Rd | 52 spant-1.14.0/spant/man/comb_coils.Rd | 88 spant-1.14.0/spant/man/comb_csv_results.Rd | 42 spant-1.14.0/spant/man/comb_fit_list_fit_tables.Rd | 76 spant-1.14.0/spant/man/comb_fit_list_result_tables.Rd | 48 spant-1.14.0/spant/man/comb_fit_tables.Rd | 46 spant-1.14.0/spant/man/comb_metab_ref.Rd | 38 spant-1.14.0/spant/man/conv_mrs.Rd | 38 spant-1.14.0/spant/man/crop_spec.Rd | 46 spant-1.14.0/spant/man/crop_td_pts.Rd | 42 spant-1.14.0/spant/man/crop_xy.Rd | 42 spant-1.14.0/spant/man/crossprod_3d.Rd | 42 spant-1.14.0/spant/man/decimate_mrs_fd.Rd | 38 spant-1.14.0/spant/man/decimate_mrs_td.Rd | 46 spant-1.14.0/spant/man/def_N.Rd | 28 spant-1.14.0/spant/man/def_acq_paras.Rd | 80 spant-1.14.0/spant/man/def_fs.Rd | 28 spant-1.14.0/spant/man/def_ft.Rd | 28 spant-1.14.0/spant/man/def_nuc.Rd | 28 spant-1.14.0/spant/man/def_ref.Rd | 28 spant-1.14.0/spant/man/dicom_reader.Rd | 64 spant-1.14.0/spant/man/diff_mrs.Rd | 38 spant-1.14.0/spant/man/downsample_mrs_fd.Rd | 34 spant-1.14.0/spant/man/downsample_mrs_td.Rd | 42 spant-1.14.0/spant/man/ecc.Rd | 52 spant-1.14.0/spant/man/elliptical_mask.Rd |only spant-1.14.0/spant/man/est_noise_sd.Rd | 46 spant-1.14.0/spant/man/fd2td.Rd | 34 spant-1.14.0/spant/man/fd_conv_filt.Rd | 36 spant-1.14.0/spant/man/fit_amps.Rd | 58 spant-1.14.0/spant/man/fit_diags.Rd | 38 spant-1.14.0/spant/man/fit_mrs.Rd | 160 spant-1.14.0/spant/man/fit_res2csv.Rd | 36 spant-1.14.0/spant/man/fp_phase.Rd | 34 spant-1.14.0/spant/man/fp_phase_correct.Rd | 44 spant-1.14.0/spant/man/fp_scale.Rd | 38 spant-1.14.0/spant/man/fs.Rd | 34 spant-1.14.0/spant/man/ft_dyn.Rd |only spant-1.14.0/spant/man/ft_shift.Rd | 34 spant-1.14.0/spant/man/ft_shift_mat.Rd | 38 spant-1.14.0/spant/man/gausswin_2d.Rd |only spant-1.14.0/spant/man/gen_F.Rd | 42 spant-1.14.0/spant/man/gen_F_xy.Rd | 42 spant-1.14.0/spant/man/get_1h_brain_basis_paras.Rd | 48 spant-1.14.0/spant/man/get_1h_brain_basis_paras_v1.Rd | 48 spant-1.14.0/spant/man/get_1h_brain_basis_paras_v2.Rd | 48 spant-1.14.0/spant/man/get_1h_brain_basis_paras_v3.Rd | 48 spant-1.14.0/spant/man/get_2d_psf.Rd | 46 spant-1.14.0/spant/man/get_acq_paras.Rd | 34 spant-1.14.0/spant/man/get_dyns.Rd | 40 spant-1.14.0/spant/man/get_even_dyns.Rd | 34 spant-1.14.0/spant/man/get_fh_dyns.Rd | 34 spant-1.14.0/spant/man/get_fit_map.Rd | 32 spant-1.14.0/spant/man/get_fp.Rd | 34 spant-1.14.0/spant/man/get_guassian_pulse.Rd | 36 spant-1.14.0/spant/man/get_lcm_cmd.Rd | 22 spant-1.14.0/spant/man/get_metab.Rd | 34 spant-1.14.0/spant/man/get_mol_names.Rd | 32 spant-1.14.0/spant/man/get_mol_paras.Rd | 32 spant-1.14.0/spant/man/get_mrs_affine.Rd | 46 spant-1.14.0/spant/man/get_mrsi2d_seg.Rd | 48 spant-1.14.0/spant/man/get_mrsi_voi.Rd | 46 spant-1.14.0/spant/man/get_mrsi_voxel.Rd | 50 spant-1.14.0/spant/man/get_mrsi_voxel_xy_psf.Rd | 50 spant-1.14.0/spant/man/get_odd_dyns.Rd | 34 spant-1.14.0/spant/man/get_ref.Rd | 34 spant-1.14.0/spant/man/get_seg_ind.Rd | 42 spant-1.14.0/spant/man/get_sh_dyns.Rd | 34 spant-1.14.0/spant/man/get_slice.Rd | 38 spant-1.14.0/spant/man/get_subset.Rd | 82 spant-1.14.0/spant/man/get_svs_voi.Rd | 38 spant-1.14.0/spant/man/get_td_amp.Rd | 50 spant-1.14.0/spant/man/get_tqn_cmd.Rd | 22 spant-1.14.0/spant/man/get_uncoupled_mol.Rd | 74 spant-1.14.0/spant/man/get_voi_cog.Rd | 34 spant-1.14.0/spant/man/get_voi_seg.Rd | 38 spant-1.14.0/spant/man/get_voi_seg_psf.Rd | 38 spant-1.14.0/spant/man/get_voxel.Rd | 54 spant-1.14.0/spant/man/grid_shift_xy.Rd | 42 spant-1.14.0/spant/man/gridplot.Rd | 32 spant-1.14.0/spant/man/gridplot.mrs_data.Rd | 76 spant-1.14.0/spant/man/hsvd.Rd | 52 spant-1.14.0/spant/man/hsvd_filt.Rd | 84 spant-1.14.0/spant/man/hsvd_vec.Rd | 58 spant-1.14.0/spant/man/hz.Rd | 42 spant-1.14.0/spant/man/ift_shift.Rd | 34 spant-1.14.0/spant/man/ift_shift_mat.Rd | 38 spant-1.14.0/spant/man/image.mrs_data.Rd | 124 spant-1.14.0/spant/man/img2kspace_xy.Rd | 34 spant-1.14.0/spant/man/int_spec.Rd | 48 spant-1.14.0/spant/man/interleave_dyns.Rd | 34 spant-1.14.0/spant/man/inv_even_dyns.Rd | 34 spant-1.14.0/spant/man/inv_odd_dyns.Rd | 34 spant-1.14.0/spant/man/is.def.Rd | 34 spant-1.14.0/spant/man/is_fd.Rd | 38 spant-1.14.0/spant/man/kspace2img_xy.Rd | 34 spant-1.14.0/spant/man/l2_reg.Rd | 58 spant-1.14.0/spant/man/lb.Rd | 54 spant-1.14.0/spant/man/lw2alpha.Rd | 38 spant-1.14.0/spant/man/lw2beta.Rd | 38 spant-1.14.0/spant/man/mask_dyns.Rd | 40 spant-1.14.0/spant/man/mask_xy.Rd | 42 spant-1.14.0/spant/man/mask_xy_mat.Rd | 44 spant-1.14.0/spant/man/mat2mrs_data.Rd | 72 spant-1.14.0/spant/man/max_mrs.Rd | 34 spant-1.14.0/spant/man/max_mrs_interp.Rd | 38 spant-1.14.0/spant/man/mean.mrs_data.Rd | 38 spant-1.14.0/spant/man/mean_dyn_blocks.Rd | 38 spant-1.14.0/spant/man/mean_dyn_pairs.Rd | 34 spant-1.14.0/spant/man/mean_dyns.Rd | 34 spant-1.14.0/spant/man/mean_mrs_list.Rd |only spant-1.14.0/spant/man/median_dyns.Rd | 34 spant-1.14.0/spant/man/mrs_data2basis.Rd | 42 spant-1.14.0/spant/man/mrs_data2mat.Rd | 44 spant-1.14.0/spant/man/mrs_data2vec.Rd | 54 spant-1.14.0/spant/man/mvfftshift.Rd | 38 spant-1.14.0/spant/man/mvifftshift.Rd | 38 spant-1.14.0/spant/man/n2coord.Rd | 32 spant-1.14.0/spant/man/nifti_flip_lr.Rd | 42 spant-1.14.0/spant/man/ortho3.Rd | 116 spant-1.14.0/spant/man/ortho3_inter.Rd | 68 spant-1.14.0/spant/man/peak_info.Rd | 72 spant-1.14.0/spant/man/pg_extrap_xy.Rd | 80 spant-1.14.0/spant/man/phase.Rd | 42 spant-1.14.0/spant/man/plot.fit_result.Rd | 154 spant-1.14.0/spant/man/plot.mrs_data.Rd | 210 spant-1.14.0/spant/man/plot_bc.Rd | 36 spant-1.14.0/spant/man/plot_slice_fit.Rd | 66 spant-1.14.0/spant/man/plot_slice_fit_inter.Rd | 72 spant-1.14.0/spant/man/plot_slice_map.Rd | 94 spant-1.14.0/spant/man/plot_slice_map_inter.Rd | 122 spant-1.14.0/spant/man/plot_voi_overlay.Rd | 44 spant-1.14.0/spant/man/plot_voi_overlay_seg.Rd | 40 spant-1.14.0/spant/man/ppm.Rd | 70 spant-1.14.0/spant/man/precomp.Rd | 40 spant-1.14.0/spant/man/print.fit_result.Rd | 32 spant-1.14.0/spant/man/print.mrs_data.Rd | 36 spant-1.14.0/spant/man/qn_states.Rd | 34 spant-1.14.0/spant/man/rats.Rd | 105 spant-1.14.0/spant/man/re_weighting.Rd | 42 spant-1.14.0/spant/man/read_basis.Rd | 38 spant-1.14.0/spant/man/read_ima_coil_dir.Rd | 48 spant-1.14.0/spant/man/read_ima_dyn_dir.Rd | 48 spant-1.14.0/spant/man/read_lcm_coord.Rd | 36 spant-1.14.0/spant/man/read_mrs.Rd | 116 spant-1.14.0/spant/man/read_mrs_tqn.Rd | 64 spant-1.14.0/spant/man/read_siemens_txt_hdr.Rd | 38 spant-1.14.0/spant/man/read_tqn_fit.Rd | 44 spant-1.14.0/spant/man/read_tqn_result.Rd | 48 spant-1.14.0/spant/man/rectangular_mask.Rd |only spant-1.14.0/spant/man/reexports.Rd | 42 spant-1.14.0/spant/man/rep_array_dim.Rd | 42 spant-1.14.0/spant/man/rep_dyn.Rd | 38 spant-1.14.0/spant/man/rep_mrs.Rd | 54 spant-1.14.0/spant/man/resample_img.Rd | 42 spant-1.14.0/spant/man/resample_voi.Rd | 42 spant-1.14.0/spant/man/reslice_to_mrs.Rd | 38 spant-1.14.0/spant/man/reson_table2mrs_data.Rd | 52 spant-1.14.0/spant/man/rm_dyns.Rd | 40 spant-1.14.0/spant/man/scale_amp_molal_pvc.Rd | 54 spant-1.14.0/spant/man/scale_amp_molar.Rd | 58 spant-1.14.0/spant/man/scale_amp_ratio.Rd | 40 spant-1.14.0/spant/man/scale_amp_water_ratio.Rd | 42 spant-1.14.0/spant/man/scale_mrs_amp.Rd |only spant-1.14.0/spant/man/scale_spec.Rd |only spant-1.14.0/spant/man/sd.Rd | 38 spant-1.14.0/spant/man/sd.mrs_data.Rd | 38 spant-1.14.0/spant/man/seconds.Rd | 34 spant-1.14.0/spant/man/seq_cpmg_ideal.Rd | 50 spant-1.14.0/spant/man/seq_mega_press_ideal.Rd | 84 spant-1.14.0/spant/man/seq_press_ideal.Rd | 50 spant-1.14.0/spant/man/seq_pulse_acquire.Rd | 42 spant-1.14.0/spant/man/seq_pulse_acquire_31p.Rd | 42 spant-1.14.0/spant/man/seq_slaser_ideal.Rd | 54 spant-1.14.0/spant/man/seq_spin_echo_ideal.Rd | 46 spant-1.14.0/spant/man/seq_spin_echo_ideal_31p.Rd | 46 spant-1.14.0/spant/man/seq_steam_ideal.Rd | 50 spant-1.14.0/spant/man/set_def_acq_paras.Rd | 56 spant-1.14.0/spant/man/set_lcm_cmd.Rd | 28 spant-1.14.0/spant/man/set_lw.Rd | 42 spant-1.14.0/spant/man/set_mask_xy_mat.Rd |only spant-1.14.0/spant/man/set_precomp_mode.Rd | 28 spant-1.14.0/spant/man/set_precomp_verbose.Rd | 28 spant-1.14.0/spant/man/set_ref.Rd | 32 spant-1.14.0/spant/man/set_td_pts.Rd | 42 spant-1.14.0/spant/man/set_tqn_cmd.Rd | 28 spant-1.14.0/spant/man/shift.Rd | 42 spant-1.14.0/spant/man/sim_basis.Rd | 64 spant-1.14.0/spant/man/sim_basis_1h_brain.Rd | 70 spant-1.14.0/spant/man/sim_basis_1h_brain_press.Rd | 70 spant-1.14.0/spant/man/sim_basis_tqn.Rd | 66 spant-1.14.0/spant/man/sim_brain_1h.Rd | 82 spant-1.14.0/spant/man/sim_mol.Rd | 80 spant-1.14.0/spant/man/sim_noise.Rd | 74 spant-1.14.0/spant/man/sim_resonances.Rd | 96 spant-1.14.0/spant/man/sim_zero.Rd |only spant-1.14.0/spant/man/spant-package.Rd | 94 spant-1.14.0/spant/man/spant_abfit_benchmark.Rd | 40 spant-1.14.0/spant/man/spant_mpress_drift.Rd | 32 spant-1.14.0/spant/man/spec_op.Rd |only spant-1.14.0/spant/man/spin_sys.Rd | 42 spant-1.14.0/spant/man/spm_pve2categorical.Rd | 38 spant-1.14.0/spant/man/ssp.Rd | 48 spant-1.14.0/spant/man/stackplot.Rd | 32 spant-1.14.0/spant/man/stackplot.fit_result.Rd | 178 spant-1.14.0/spant/man/stackplot.mrs_data.Rd | 206 spant-1.14.0/spant/man/sub_mean_dyns.Rd |only spant-1.14.0/spant/man/sum_coils.Rd | 34 spant-1.14.0/spant/man/sum_dyns.Rd | 34 spant-1.14.0/spant/man/svs_1h_brain_analysis.Rd | 152 spant-1.14.0/spant/man/svs_1h_brain_batch_analysis.Rd | 86 spant-1.14.0/spant/man/td2fd.Rd | 34 spant-1.14.0/spant/man/td_conv_filt.Rd | 42 spant-1.14.0/spant/man/tdsr.Rd | 52 spant-1.14.0/spant/man/varpro_3_para_opts.Rd | 100 spant-1.14.0/spant/man/varpro_opts.Rd | 96 spant-1.14.0/spant/man/vec2mrs_data.Rd | 74 spant-1.14.0/spant/man/write_basis.Rd | 36 spant-1.14.0/spant/man/write_basis_tqn.Rd | 46 spant-1.14.0/spant/man/write_mrs.Rd | 40 spant-1.14.0/spant/man/write_mrs_nifti.Rd | 32 spant-1.14.0/spant/man/zero_nzoc.Rd | 38 spant-1.14.0/spant/man/zf.Rd | 52 spant-1.14.0/spant/man/zf_xy.Rd | 44 spant-1.14.0/spant/tests/testthat.R | 8 spant-1.14.0/spant/tests/testthat/test_fitting.R | 148 spant-1.14.0/spant/tests/testthat/test_nifti.R | 72 spant-1.14.0/spant/tests/testthat/test_preproc.R | 8 spant-1.14.0/spant/tests/testthat/test_qm_sim.R | 10 spant-1.14.0/spant/vignettes/abfit-baseline-opts.Rmd | 184 spant-1.14.0/spant/vignettes/spant-basis-simulation.Rmd | 146 spant-1.14.0/spant/vignettes/spant-intro.Rmd | 186 spant-1.14.0/spant/vignettes/spant-metabolite-simulation.Rmd | 248 spant-1.14.0/spant/vignettes/spant-preprocessing.Rmd | 152 338 files changed, 25298 insertions(+), 24886 deletions(-)
More information about connectwidgets at CRAN
Permanent link
Title: Wavelet Scalogram Tools for Time Series Analysis
Description: Provides scalogram based wavelet tools for time series analysis: wavelet power spectrum, scalogram, windowed scalogram, windowed scalogram difference (see Bolos et al. (2017) <doi:10.1016/j.amc.2017.05.046>), scale index and windowed scale index (Benitez et al. (2010) <doi:10.1016/j.camwa.2010.05.010>).
Author: Vicente J. Bolos and Rafael Benitez
Maintainer: Vicente J. Bolos <vicente.bolos@uv.es>
Diff between wavScalogram versions 1.1.0 dated 2020-12-13 and 1.1.1 dated 2021-07-23
DESCRIPTION | 12 ++++++------ MD5 | 4 ++-- NAMESPACE | 2 +- 3 files changed, 9 insertions(+), 9 deletions(-)
Title: Fast 'match()' Function
Description: Package providing a fast match() replacement for cases
that require repeated look-ups. It is slightly faster that R's
built-in match() function on first match against a table, but
extremely fast on any subsequent lookup as it keeps the hash
table in memory.
Author: Simon Urbanek <simon.urbanek@r-project.org>
Maintainer: Simon Urbanek <simon.urbanek@r-project.org>
Diff between fastmatch versions 1.1-0 dated 2017-01-28 and 1.1-3 dated 2021-07-23
DESCRIPTION | 9 +++++---- MD5 | 8 ++++---- NEWS | 22 +++++++++++++++++++++- src/common.h | 2 +- src/fastmatch.c | 33 ++++++++++++++++++++++++++++++--- 5 files changed, 61 insertions(+), 13 deletions(-)
Title: I/O Tools for Streaming
Description: Basic I/O tools for streaming and data parsing.
Author: Simon Urbanek <Simon.Urbanek@r-project.org>, Taylor Arnold <taylor.arnold@acm.org>
Maintainer: Simon Urbanek <Simon.Urbanek@r-project.org>
Diff between iotools versions 0.3-1 dated 2020-03-09 and 0.3-2 dated 2021-07-23
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS | 5 +++++ README.md | 4 ++++ src/as_output.c | 2 +- src/ctapply.c | 15 +++++++++------ src/lnchunk.c | 4 ++-- 7 files changed, 30 insertions(+), 18 deletions(-)
Title: Descriptive Statistics of Grouped Data
Description: Contains a function called gds() which accepts three input
parameters like lower limits, upper limits and the frequencies of the
corresponding classes. The gds() function calculate and return the values
of mean ('gmean'), median ('gmedian'), mode ('gmode'), variance ('gvar'), standard
deviation ('gstdev'), coefficient of variance ('gcv'), quartiles ('gq1', 'gq2', 'gq3'),
inter-quartile range ('gIQR'), skewness ('g1'), and kurtosis ('g2') which facilitate
effective data analysis. For skewness and kurtosis calculations we use moments.
Author: Partha Sarathi Bishnu <psbishnu@gmail.com>
Maintainer: Partha Sarathi Bishnu <psbishnu@gmail.com>
Diff between gds versions 0.1.0 dated 2016-04-08 and 0.1.1 dated 2021-07-23
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NAMESPACE | 4 +--- R/gds.R | 2 +- man/gds.Rd | 1 - 5 files changed, 11 insertions(+), 14 deletions(-)
Title: An Extension to 'ggplot2', for the Creation of Ternary Diagrams
Description: Extends the functionality of 'ggplot2', providing the capability
to plot ternary diagrams for (subset of) the 'ggplot2' geometries. Additionally,
'ggtern' has implemented several NEW geometries which are unavailable to the
standard 'ggplot2' release. For further examples and documentation, please
proceed to the 'ggtern' website.
Author: Nicholas Hamilton [aut, cre]
Maintainer: Nicholas Hamilton <nick@ggtern.com>
Diff between ggtern versions 3.3.0 dated 2020-04-11 and 3.3.5 dated 2021-07-23
DESCRIPTION | 19 +++--- MD5 | 100 ++++++++++++++++++----------------- NEWS | 2 R/calc-tern-tlr2xy.R | 2 R/gg-internal.R | 4 + R/plot-build.R | 13 +++- R/stat-hex-tern.R | 2 R/theme.R | 62 +++++++++++----------- README.md | 4 - build/partial.rdb |binary man/annotate.Rd | 23 ++++++-- man/annotation_raster_tern.Rd | 10 ++- man/arrangeGrob.Rd | 24 ++++++-- man/data_Feldspar.Rd | 4 + man/data_Fragments.Rd | 6 +- man/data_SkyeLava.Rd | 6 +- man/data_USDA.Rd | 4 + man/data_WhiteCells.Rd | 6 +- man/geom_Xisoprop.Rd | 44 +++++++++++---- man/geom_Xline.Rd | 114 ++++++++++++++++++++++++++++++----------- man/geom_confidence_tern.Rd | 49 ++++++++++++----- man/geom_crosshair_tern.Rd | 78 ++++++++++++++++++++-------- man/geom_density_tern.Rd | 56 ++++++++++++++------ man/geom_errorbarX.Rd | 61 +++++++++++++++------ man/geom_hex_tern.Rd | 45 +++++++++++----- man/geom_interpolate_tern.Rd | 53 ++++++++++++------- man/geom_label_viewport.Rd | 33 +++++++---- man/geom_mean_ellipse.Rd | 46 +++++++++++----- man/geom_point_swap.Rd | 25 +++++--- man/geom_polygon_closed.Rd | 26 ++++++--- man/geom_smooth_tern.Rd | 57 ++++++++++++++------ man/geom_text_viewport.Rd | 33 +++++++---- man/geom_tri_tern.Rd | 45 +++++++++++----- man/ggplot.Rd | 5 - man/ggsave.Rd | 16 ++++- man/ggtern.Rd | 5 - man/ggtern_labels.Rd | 2 man/ggtern_themes.Rd | 14 +++-- man/kde2d.weighted.Rd | 2 man/labels_tern.Rd | 8 ++ man/mahalanobis_distance.Rd | 9 ++- man/overloaded.Rd |only man/position_jitter_tern.Rd | 3 - man/position_nudge_tern.Rd | 3 - man/scale_X_continuous.Rd | 48 ++++++++++++----- man/theme.Rd |only man/theme_arrowlength.Rd | 12 ++-- man/theme_showgrid.Rd | 6 +- man/theme_showprimary.Rd | 4 - man/transform_position_tern.Rd | 9 ++- man/undocumented.Rd | 8 -- man/zzz-depreciated.Rd | 24 ++++++-- 52 files changed, 834 insertions(+), 400 deletions(-)
Title: A Simple S3 Class for Representing Vectors of Binary Data
('BLOBS')
Description: R's raw vector is useful for storing a single
binary object. What if you want to put a vector of them in a data
frame? The 'blob' package provides the blob object, a list of raw
vectors, suitable for use as a column in data frame.
Author: Hadley Wickham [aut],
Kirill Müller [cre],
RStudio [cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between blob versions 1.2.1 dated 2020-01-20 and 1.2.2 dated 2021-07-23
DESCRIPTION | 11 +++++------ LICENSE |only MD5 | 11 ++++++----- NEWS.md | 8 ++++++++ R/format.R | 3 --- R/zzz.R | 1 - README.md | 8 ++++---- 7 files changed, 23 insertions(+), 19 deletions(-)
Title: State-Dependent Empirical Analysis
Description: A set of tools for state-dependent
empirical analysis through both VAR- and local projection-based
state-dependent forecasts, impulse response functions,
historical decompositions, and forecast error variance decompositions.
Author: Tyler J. Pike [aut, cre]
Maintainer: Tyler J. Pike <tjpike7@gmail.com>
Diff between sovereign versions 1.1.0 dated 2021-06-01 and 1.2.0 dated 2021-07-23
sovereign-1.1.0/sovereign/tests/testthat/test-threvhold_var.R |only sovereign-1.2.0/sovereign/DESCRIPTION | 12 sovereign-1.2.0/sovereign/MD5 | 78 sovereign-1.2.0/sovereign/NAMESPACE | 3 sovereign-1.2.0/sovereign/NEWS.md | 30 sovereign-1.2.0/sovereign/R/analysis_wrappers.R |only sovereign-1.2.0/sovereign/R/covid_correction.R | 438 +- sovereign-1.2.0/sovereign/R/helper.R | 196 - sovereign-1.2.0/sovereign/R/lp.R | 1455 ++++---- sovereign-1.2.0/sovereign/R/lp_irf.R | 398 +- sovereign-1.2.0/sovereign/R/plot_hd.R | 208 - sovereign-1.2.0/sovereign/R/plot_irf.R | 210 - sovereign-1.2.0/sovereign/R/regimes.R | 219 - sovereign-1.2.0/sovereign/R/sovle_b.R |only sovereign-1.2.0/sovereign/R/var.R | 1617 +++++----- sovereign-1.2.0/sovereign/R/var_fevd.R | 699 ++-- sovereign-1.2.0/sovereign/R/var_hd.R | 752 ++-- sovereign-1.2.0/sovereign/R/var_irf.R | 1337 ++++---- sovereign-1.2.0/sovereign/README.md | 432 +- sovereign-1.2.0/sovereign/inst/doc/getting_started.R | 4 sovereign-1.2.0/sovereign/inst/doc/getting_started.Rmd | 698 ++-- sovereign-1.2.0/sovereign/inst/doc/getting_started.html | 64 sovereign-1.2.0/sovereign/man/FEVD.Rd |only sovereign-1.2.0/sovereign/man/HD.Rd |only sovereign-1.2.0/sovereign/man/IRF.Rd |only sovereign-1.2.0/sovereign/man/LP.Rd | 5 sovereign-1.2.0/sovereign/man/RLP.Rd | 200 - sovereign-1.2.0/sovereign/man/RVAR.Rd | 250 - sovereign-1.2.0/sovereign/man/VAR.Rd | 67 sovereign-1.2.0/sovereign/man/covid_volatility_correction.Rd | 128 sovereign-1.2.0/sovereign/man/plot_hd.Rd | 38 sovereign-1.2.0/sovereign/man/plot_individual_hd.Rd | 42 sovereign-1.2.0/sovereign/man/rvar_fevd.Rd | 145 sovereign-1.2.0/sovereign/man/rvar_hd.Rd | 140 sovereign-1.2.0/sovereign/man/rvar_irf.Rd | 156 sovereign-1.2.0/sovereign/man/var_fevd.Rd | 3 sovereign-1.2.0/sovereign/man/var_hd.Rd | 133 sovereign-1.2.0/sovereign/man/var_irf.Rd | 37 sovereign-1.2.0/sovereign/tests/testthat/Rplots.pdf |binary sovereign-1.2.0/sovereign/tests/testthat/test-lp.R | 185 - sovereign-1.2.0/sovereign/tests/testthat/test-regime_var.R |only sovereign-1.2.0/sovereign/tests/testthat/test-structure.R |only sovereign-1.2.0/sovereign/tests/testthat/test-var.R | 196 - sovereign-1.2.0/sovereign/vignettes/getting_started.Rmd | 698 ++-- 44 files changed, 5942 insertions(+), 5331 deletions(-)
Title: Add Custom Legends to 'leaflet' Maps
Description: Provides extensions to the 'leaflet' package to
customize legends with images, text styling, orientation, sizing,
and symbology.
Author: Thomas Roh [aut, cre],
Ricardo Rodrigo Basa [ctb]
Maintainer: Thomas Roh <thomas@roh.engineering>
Diff between leaflegend versions 0.3.0 dated 2021-05-21 and 0.4.0 dated 2021-07-23
DESCRIPTION | 18 ++-- MD5 | 15 +-- NEWS.md | 76 +++++++++++------- R/legend.R | 202 ++++++++++++++++++++++++++++++++++++++++++++++---- README.md | 16 ++- man/addLeafLegends.Rd | 43 ++++++++++ man/addLegendImage.Rd | 34 +++++++- man/addLegendSize.Rd | 34 +++++++- man/figures |only 9 files changed, 372 insertions(+), 66 deletions(-)
Title: Structural Additive Cumulative Intensity Models with IV
Description: An instrumental variable estimator under structural cumulative additive intensity model is fitted, that leverages initial randomization as the IV. The estimator can be used to fit an additive hazards model under time to event data which handles treatment switching (treatment crossover) correctly. We also provide a consistent variance estimate.
Author: Andrew Ying
Maintainer: Andrew Ying <aying9339@gmail.com>
Diff between ivsacim versions 1.1 dated 2021-01-10 and 1.3 dated 2021-07-23
DESCRIPTION | 14 +++---- MD5 | 24 +++++++----- NAMESPACE | 4 +- R/RcppExports.R | 18 ++++++++- R/auxiliary.R | 57 ++++++++++++++++++++++++++++ R/ivsacim.R | 89 +++++++++++++++++++++++++-------------------- R/zzz.R |only man/invalidivsacim_est.Rd |only man/ivsacim.Rd | 23 ++++++----- man/ivsacim_est.Rd | 17 ++++++++ man/summary.ivsacim.Rd | 2 - man/trt_center.Rd |only src/RcppExports.cpp | 35 +++++++++++++++-- src/invalidivsacim_est.cpp |only src/ivsacim_est.cpp | 67 ++++++++++++++++----------------- 15 files changed, 240 insertions(+), 110 deletions(-)