Sat, 24 Jul 2021

Package searcher updated to version 0.0.6 with previous version 0.0.5 dated 2020-02-06

Title: Query Search Interfaces
Description: Provides a search interface to look up terms on 'Google', 'Bing', 'DuckDuckGo', 'Startpage', 'Ecosia', 'rseek', 'Twitter', 'StackOverflow', 'RStudio Community', 'GitHub', and 'BitBucket'. Upon searching, a browser window will open with the aforementioned search results.
Author: James Balamuta [aut, cre] (<https://orcid.org/0000-0003-2826-8458>), Alex Rossell Hayes [ctb] (<https://orcid.org/0000-0001-9412-0457>)
Maintainer: James Balamuta <balamut2@illinois.edu>

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Package genius updated to version 2.2.3 with previous version 2.2.2 dated 2020-05-28

Title: Easily Access Song Lyrics from Genius.com
Description: Easily access song lyrics in a tidy way.
Author: Josiah Parry [aut, cre], Nathan Barr [aut, ctb], Chris Billingham [ctb], Evan Oppenheimer [ctb]
Maintainer: Josiah Parry <josiah.parry@gmail.com>

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Package exoplanets updated to version 0.2.2 with previous version 0.2.1 dated 2021-05-17

Title: Access NASA's Exoplanet Archive Data
Description: The goal of exoplanets is to provide access to NASA's Exoplanet Archive TAP Service. For more information regarding the API please read the documentation <https://exoplanetarchive.ipac.caltech.edu/index.html>.
Author: Tyler Littlefield [aut, cre] (<https://orcid.org/0000-0002-6020-1125>), Maëlle Salmon [ctb, rev], Mathida Chuk [ctb]
Maintainer: Tyler Littlefield <tylerlittlefield@hey.com>

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Package utf8 updated to version 1.2.2 with previous version 1.2.1 dated 2021-03-12

Title: Unicode Text Processing
Description: Process and print 'UTF-8' encoded international text (Unicode). Input, validate, normalize, encode, format, and display.
Author: Patrick O. Perry [aut, cph], Kirill Müller [cre], Unicode, Inc. [cph, dtc] (Unicode Character Database)
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>

Diff between utf8 versions 1.2.1 dated 2021-03-12 and 1.2.2 dated 2021-07-24

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Package sensobol updated to version 1.0.3 with previous version 1.0.2 dated 2021-05-30

Title: Computation of Variance-Based Sensitivity Indices
Description: It allows to rapidly compute, bootstrap and plot up to third-order Sobol'-based sensitivity indices using several state-of-the-art first and total-order estimators. Sobol' indices can be computed either for models that yield a scalar as a model output or for systems of differential equations. The package also provides a suit of benchmark tests functions and several options to obtain publication-ready figures of the model output uncertainty and sensitivity-related analysis. An overview of Sobol'-based sensitivity indices can be found in Saltelli et al. (2008, ISBN:9780470059975) and in Puy, Lo Piano, Saltelli, and Levin (2021) <arXiv:2101.10103>.
Author: Arnald Puy [aut, cre] (<https://orcid.org/0000-0001-9469-2156>), Bertrand Ioos [ctb] (Author of included 'sensitivity' fragments), Gilles Pujol [ctb] (Author of included 'sensitivity' fragments), RStudio [cph] (Copyright holder of included 'sensitivity' fragments)
Maintainer: Arnald Puy <arnald.puy@pm.me>

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Package parseRPDR updated to version 0.2.0 with previous version 0.1.2 dated 2021-06-06

Title: Parse and Manipulate Research Patient Data Registry ('RPDR') Text Queries
Description: Functions to load Research Patient Data Registry ('RPDR') text queries from Partners Healthcare institutions into R. The package also provides helper functions to manipulate data and execute common procedures such as finding the closest radiological exams considering a given timepoint, or creating a DICOM header database from the downloaded images. 'parseRPDR' currently supports txt sources: "mrn", "con", "dem", "enc", "rdt", "lab", "med", "dia", "rfv", "prc", "phy", "lno", "car", "dis", "end", "hnp", "opn", "pat", "prg", "pul", "rad" and "vis". All functionalities are parallelized for fast and efficient analyses.
Author: Marton Kolossvary [aut, cre]
Maintainer: Marton Kolossvary <mkolossvary@mgh.harvard.edu>

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Package littler updated to version 0.3.13 with previous version 0.3.12 dated 2020-10-07

Title: R at the Command-Line via 'r'
Description: A scripting and command-line front-end is provided by 'r' (aka 'littler') as a lightweight binary wrapper around the GNU R language and environment for statistical computing and graphics. While R can be used in batch mode, the r binary adds full support for both 'shebang'-style scripting (i.e. using a hash-mark-exclamation-path expression as the first line in scripts) as well as command-line use in standard Unix pipelines. In other words, r provides the R language without the environment.
Author: Dirk Eddelbuettel and Jeff Horner
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between littler versions 0.3.12 dated 2020-10-07 and 0.3.13 dated 2021-07-24

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Package cNORM updated to version 2.0.4 with previous version 2.0.3 dated 2021-04-10

Title: Continuous Norming
Description: Conventional methods for producing standard scores in psychometrics or biometrics are often plagued with "jumps" or "gaps" (i.e., discontinuities) in norm tables and low confidence for assessing extreme scores. The continuous norming method introduced by A. Lenhard et al. (2016, <doi:10.1177/1073191116656437>; 2019, <doi:10.1371/journal.pone.0222279>) and generates continuous test norm scores on the basis of the raw data from standardization samples, without requiring assumptions about the distribution of the raw data: Norm scores are directly established from raw data by modeling the latter ones as a function of both percentile scores and an explanatory variable (e.g., age). The method minimizes bias arising from sampling and measurement error, while handling marked deviations from normality, addressing bottom or ceiling effects and capturing almost all of the variance in the original norm data sample. An online demonstration is available via <https://cnorm.shinyapps.io/cNORM/>.
Author: Wolfgang Lenhard [cre, aut] (<https://orcid.org/0000-0002-8184-6889>), Alexandra Lenhard [aut], Sebastian Gary [aut]
Maintainer: Wolfgang Lenhard <wolfgang.lenhard@uni-wuerzburg.de>

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Package OpenCL updated to version 0.2-2 with previous version 0.2-1 dated 2020-03-09

Title: Interface allowing R to use OpenCL
Description: This package provides an interface to OpenCL, allowing R to leverage computing power of GPUs and other HPC accelerator devices.
Author: Simon Urbanek <Simon.Urbanek@r-project.org>, Aaron Puchert <aaronpuchert@alice-dsl.net>
Maintainer: Simon Urbanek <Simon.Urbanek@r-project.org>

Diff between OpenCL versions 0.2-1 dated 2020-03-09 and 0.2-2 dated 2021-07-24

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Package jpeg updated to version 0.1-9 with previous version 0.1-8.1 dated 2019-10-24

Title: Read and write JPEG images
Description: This package provides an easy and simple way to read, write and display bitmap images stored in the JPEG format. It can read and write both files and in-memory raw vectors.
Author: Simon Urbanek <Simon.Urbanek@r-project.org>
Maintainer: Simon Urbanek <Simon.Urbanek@r-project.org>

Diff between jpeg versions 0.1-8.1 dated 2019-10-24 and 0.1-9 dated 2021-07-24

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Package stringfish updated to version 0.15.2 with previous version 0.15.1 dated 2021-03-16

Title: Alt String Implementation
Description: Provides an extendable, performant and multithreaded 'alt-string' implementation backed by 'C++' vectors and strings.
Author: Travers Ching [aut, cre, cph], Phillip Hazel [ctb] (Bundled PCRE2 code), Zoltan Herczeg [ctb, cph] (Bundled PCRE2 code), University of Cambridge [cph] (Bundled PCRE2 code), Tilera Corporation [cph] (Stack-less Just-In-Time compiler bundled with PCRE2), Yann Collet [ctb, cph] (Yann Collet is the author of the bundled xxHash code)
Maintainer: Travers Ching <traversc@gmail.com>

Diff between stringfish versions 0.15.1 dated 2021-03-16 and 0.15.2 dated 2021-07-24

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Package collapse updated to version 1.6.5 with previous version 1.6.4 dated 2021-07-13

Title: Advanced and Fast Data Transformation
Description: A C/C++ based package for advanced data transformation and statistical computing in R that is extremely fast, flexible and parsimonious to code with, class-agnostic and programmer friendly. It is well integrated with base R, 'dplyr' / (grouped) 'tibble', 'data.table', 'plm' (panel-series and data frames), 'sf' data frames, and non-destructively handles other matrix or data frame based classes (such as 'ts', 'xts' / 'zoo', 'timeSeries', 'tsibble', 'tibbletime' etc.) --- Key Features: --- (1) Advanced statistical programming: A full set of fast statistical functions supporting grouped and weighted computations on vectors, matrices and data frames. Fast and programmable grouping, ordering, unique values / rows, factor generation and interactions. Fast and flexible functions for data manipulation and data object conversions. (2) Advanced aggregation: Fast and easy multi-data-type, multi-function, weighted, parallelized and fully customized data aggregation. (3) Advanced transformations: Fast row / column arithmetic, (grouped) replacing and sweeping out of statistics, (grouped, weighted) scaling / standardizing, between (averaging) and (quasi-)within (centering / demeaning) transformations, higher-dimensional centering (i.e. multiple fixed effects transformations), linear prediction / partialling-out, linear model fitting and testing. (4) Advanced time-computations: Fast (sequences of) lags / leads, and (lagged / leaded, iterated, quasi-, log-) differences, (compounded) growth rates, and cumulative sums on (unordered, irregular) time series and panel data. Multivariate auto-, partial- and cross-correlation functions for panel data. Panel data to (ts-)array conversions. (5) List processing: (Recursive) list search / identification, splitting, extraction / subsetting, data-apply, and generalized recursive row-binding / unlisting in 2D. (6) Advanced data exploration: Fast (grouped, weighted, panel-decomposed) summary statistics for complex multilevel / panel data.
Author: Sebastian Krantz [aut, cre], Matt Dowle [ctb], Arun Srinivasan [ctb], Laurent Berge [ctb], Dirk Eddelbuettel [ctb], Josh Pasek [ctb], Kevin Tappe [ctb], R Core Team and contributors worldwide [ctb], Martyn Plummer [cph], 1999-2016 The R Core Team [cph]
Maintainer: Sebastian Krantz <sebastian.krantz@graduateinstitute.ch>

Diff between collapse versions 1.6.4 dated 2021-07-13 and 1.6.5 dated 2021-07-24

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Package tsentiment (with last version 0.1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2021-07-19 0.1.1

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Package tongfen updated to version 0.3.3 with previous version 0.3 dated 2020-11-04

Title: Make Data Based on Different Geographies Comparable
Description: Several functions to allow comparisons of data across different geographies, in particular for Canadian census data from different censuses.
Author: Jens von Bergmann [aut, cre] (creator and maintainer)
Maintainer: Jens von Bergmann <jens@mountainmath.ca>

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Package springer updated to version 0.1.3 with previous version 0.1.2 dated 2020-07-05

Title: Sparse Group Variable Selection for Gene-Environment Interactions in the Longitudinal Study
Description: Recently, regularized variable selection has emerged as a powerful tool to identify and dissect gene-environment interactions. Nevertheless, in longitudinal studies with high dimensional genetic factors, regularization methods for G×E interactions have not been systematically developed. In this package, we provide the implementation of sparse group variable selection, based on both the quadratic inference function (QIF) and generalized estimating equation (GEE), to accommodate the bi-level selection for longitudinal G×E studies with high dimensional genomic features. Alternative methods conducting only the group or individual level selection have also been included. The core modules of the package have been developed in C++.
Author: Fei Zhou, Xi Lu, Jie Ren, Kun Fan, Cen Wu
Maintainer: Fei Zhou <feiz@ksu.edu>

Diff between springer versions 0.1.2 dated 2020-07-05 and 0.1.3 dated 2021-07-24

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Package rpart.plot updated to version 3.1.0 with previous version 3.0.9 dated 2020-09-17

Title: Plot 'rpart' Models: An Enhanced Version of 'plot.rpart'
Description: Plot 'rpart' models. Extends plot.rpart() and text.rpart() in the 'rpart' package.
Author: Stephen Milborrow
Maintainer: Stephen Milborrow <milbo@sonic.net>

Diff between rpart.plot versions 3.0.9 dated 2020-09-17 and 3.1.0 dated 2021-07-24

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Package ibdsim2 updated to version 1.4.0 with previous version 1.3.0 dated 2020-11-13

Title: Simulation of Chromosomal Regions Shared by Family Members
Description: Simulation of segments shared identical-by-descent (IBD) by pedigree members. Using sex specific recombination rates along the human genome (Halldorsson et al. (2019) <doi:10.1126/science.aau1043>), phased chromosomes are simulated for all pedigree members. Applications include calculation of realised relatedness coefficients and IBD segment distributions. 'ibdsim2' is part of the 'ped suite' collection of packages for pedigree analysis. A detailed presentation of the 'ped suite', including a separate chapter on 'ibdsim2', is available in the book 'Pedigree analysis in R' (Vigeland, 2021, ISBN:9780128244302). A 'shiny' app for visualising and comparing IBD distributions is available at <https://magnusdv.shinyapps.io/ibdsim2-shiny/>.
Author: Magnus Dehli Vigeland [aut, cre] (<https://orcid.org/0000-0002-9134-4962>)
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>

Diff between ibdsim2 versions 1.3.0 dated 2020-11-13 and 1.4.0 dated 2021-07-24

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Package hutilscpp updated to version 0.8.0 with previous version 0.7.2 dated 2021-06-14

Title: Miscellaneous Functions in C++
Description: Provides utility functions that are simply, frequently used, but may require higher performance that what can be obtained from base R. Incidentally provides support for 'reverse geocoding', such as matching a point with its nearest neighbour in another array. Used as a complement to package 'hutils' by sacrificing compilation or installation time for higher running speeds. The name is a portmanteau of the author and 'Rcpp'.
Author: Hugh Parsonage [aut, cre], Simon Urbanek [ctb] (fastmatch components)
Maintainer: Hugh Parsonage <hugh.parsonage@gmail.com>

Diff between hutilscpp versions 0.7.2 dated 2021-06-14 and 0.8.0 dated 2021-07-24

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