Title: Covariate-Adaptive Randomization for Clinical Trials
Description: Provides functions and command-line user interface to generate allocation sequence by covariate-adaptive randomization for clinical trials. The package currently supports six covariate-adaptive randomization procedures. Three hypothesis testing methods that are valid and robust under covariate-adaptive randomization are also available in the package to facilitate the inference for treatment effect under the included randomization procedures. Additionally, the package provides comprehensive and efficient tools to allow one to evaluate and compare the performance of randomization procedures and tests based on various criteria.
Author: Fuyi Tu [aut],
Xiaoqing Ye [aut, cre],
Wei Ma [aut, ths],
Feifang Hu [aut, ths]
Maintainer: Xiaoqing Ye <ye_xiaoq@163.com>
Diff between carat versions 1.4 dated 2020-09-26 and 1.5 dated 2021-07-25
DESCRIPTION | 14 - MD5 | 28 +-- R/RcppExports.R | 4 R/class_carandom.R | 23 ++- R/class_careval.R | 37 ++++ R/rand_CLI.R | 219 ++++++++++++++++++++++------ R/rand_completeData.R | 181 ++++++++++++++++------- R/rand_evalRand.R | 42 ++++- R/rand_generatingData.R | 28 +-- R/test_Rfunction.R | 368 ++++++++++++++++++++++++------------------------ data/pats.rda |binary inst/NEWS.Rd | 6 man/evalRand.Rd | 2 src/InnerFun.cpp | 111 ++++++-------- src/RcppExports.cpp | 13 + 15 files changed, 677 insertions(+), 399 deletions(-)
Title: Tour in 'Loon'
Description: Implement tour algorithms in interactive graphical system 'loon'.
Author: Zehao Xu [aut, cre],
R. Wayne Oldford [aut]
Maintainer: Zehao Xu <z267xu@uwaterloo.ca>
Diff between loon.tourr versions 0.1.1 dated 2021-05-17 and 0.1.2 dated 2021-07-25
DESCRIPTION | 9 ++++----- MD5 | 18 +++++++++--------- NAMESPACE | 1 + R/l_layer_callback.R | 2 +- R/l_tour.R | 8 ++++++++ R/l_tour_pairs.R | 7 +++++++ R/tour_generation.R | 10 ++++++---- inst/doc/classification.html | 4 ++-- inst/doc/tours.html | 4 ++-- man/l_layer_callback.Rd | 2 +- 10 files changed, 41 insertions(+), 24 deletions(-)
Title: Bayesian Nonparametric Mixture Models
Description: Functions to perform Bayesian nonparametric univariate and multivariate density estimation and clustering, by means of Pitman-Yor mixtures, and dependent Dirichlet process mixtures for partially exchangeable data.
Author: Riccardo Corradin [aut, cre], Antonio Canale [ctb], Bernardo Nipoti [ctb]
Maintainer: Riccardo Corradin <riccardo.corradin@gmail.com>
Diff between BNPmix versions 0.2.8 dated 2021-03-21 and 0.2.9 dated 2021-07-25
DESCRIPTION | 10 ++++++---- MD5 | 19 +++++++++++++++---- build |only inst |only src/CommonUtilities.cpp | 37 ++++++++++++++++++++++++++++++++++++- src/CommonUtilities.h | 9 +++++++++ src/MAR.cpp | 10 ++++++++-- vignettes |only 8 files changed, 74 insertions(+), 11 deletions(-)
Title: R6 Mathematical Sets Interface
Description: An object-oriented package for mathematical sets, upgrading the current gold-standard {sets}. Many forms of mathematical sets are implemented, including (countably finite) sets, tuples, intervals (countably infinite or uncountable), and fuzzy variants. Wrappers extend functionality by allowing symbolic representations of complex operations on sets, including unions, (cartesian) products, exponentiation, and differences (asymmetric and symmetric).
Author: Raphael Sonabend [aut, cre] (<https://orcid.org/0000-0001-9225-4654>),
Franz Kiraly [aut]
Maintainer: Raphael Sonabend <raphaelsonabend@gmail.com>
Diff between set6 versions 0.2.2 dated 2021-07-16 and 0.2.3 dated 2021-07-25
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 9 +++++++-- R/SetWrapper_ExponentSet.R | 14 +++++++------- README.md | 28 ++++++++++++++-------------- inst/doc/set6.html | 4 ++-- tests/testthat/test_operations_setpower.R | 14 ++++++++++---- 7 files changed, 49 insertions(+), 38 deletions(-)
Title: Data Validation and Organization of Metadata for Local and
Remote Tables
Description: Validate data in data frames, 'tibble' objects, 'Spark'
'DataFrames', and database tables. Validation pipelines can be made using
easily-readable, consecutive validation steps. Upon execution of the
validation plan, several reporting options are available. User-defined
thresholds for failure rates allow for the determination of appropriate
reporting actions. Many other workflows are available including an
information management workflow, where the aim is to record, collect, and
generate useful information on data tables.
Author: Richard Iannone [aut, cre] (<https://orcid.org/0000-0003-3925-190X>),
Mauricio Vargas [aut] (<https://orcid.org/0000-0003-1017-7574>)
Maintainer: Richard Iannone <riannone@me.com>
Diff between pointblank versions 0.7.0 dated 2021-03-09 and 0.8.0 dated 2021-07-25
pointblank-0.7.0/pointblank/R/utils_translations.R |only pointblank-0.7.0/pointblank/man/print.examination_page.Rd |only pointblank-0.8.0/pointblank/DESCRIPTION | 37 pointblank-0.8.0/pointblank/MD5 | 362 +- pointblank-0.8.0/pointblank/NAMESPACE | 13 pointblank-0.8.0/pointblank/NEWS.md | 38 pointblank-0.8.0/pointblank/R/action_levels.R | 34 pointblank-0.8.0/pointblank/R/all_passed.R | 41 pointblank-0.8.0/pointblank/R/col_exists.R | 2 pointblank-0.8.0/pointblank/R/col_is_character.R | 2 pointblank-0.8.0/pointblank/R/col_is_date.R | 2 pointblank-0.8.0/pointblank/R/col_is_factor.R | 2 pointblank-0.8.0/pointblank/R/col_is_integer.R | 2 pointblank-0.8.0/pointblank/R/col_is_logical.R | 2 pointblank-0.8.0/pointblank/R/col_is_numeric.R | 2 pointblank-0.8.0/pointblank/R/col_is_posix.R | 2 pointblank-0.8.0/pointblank/R/col_schema_match.R | 13 pointblank-0.8.0/pointblank/R/col_vals_between.R | 122 pointblank-0.8.0/pointblank/R/col_vals_decreasing.R | 120 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pointblank-0.8.0/pointblank/R/conjointly.R | 114 pointblank-0.8.0/pointblank/R/create_agent.R | 7 pointblank-0.8.0/pointblank/R/create_informant.R | 6 pointblank-0.8.0/pointblank/R/create_multiagent.R | 5 pointblank-0.8.0/pointblank/R/datasets.R | 107 pointblank-0.8.0/pointblank/R/draft_validation.R |only pointblank-0.8.0/pointblank/R/emailing.R | 12 pointblank-0.8.0/pointblank/R/file_naming.R | 4 pointblank-0.8.0/pointblank/R/get_agent_report.R | 206 + pointblank-0.8.0/pointblank/R/get_agent_x_list.R | 1 pointblank-0.8.0/pointblank/R/get_data_extracts.R | 95 pointblank-0.8.0/pointblank/R/get_informant_report.R | 16 pointblank-0.8.0/pointblank/R/get_multiagent_report.R | 179 + pointblank-0.8.0/pointblank/R/get_sundered_data.R | 91 pointblank-0.8.0/pointblank/R/has_columns.R | 2 pointblank-0.8.0/pointblank/R/incorporate.R | 89 pointblank-0.8.0/pointblank/R/info_add.R | 26 pointblank-0.8.0/pointblank/R/interrogate.R | 450 ++- pointblank-0.8.0/pointblank/R/logging.R | 18 pointblank-0.8.0/pointblank/R/object_ops.R | 657 ++++ pointblank-0.8.0/pointblank/R/print.R | 207 + pointblank-0.8.0/pointblank/R/read_disk_multiagent.R | 2 pointblank-0.8.0/pointblank/R/regex.R |only pointblank-0.8.0/pointblank/R/remove_deactivate.R | 2 pointblank-0.8.0/pointblank/R/rows_distinct.R | 126 pointblank-0.8.0/pointblank/R/scan_data.R | 1420 ++++------ pointblank-0.8.0/pointblank/R/steps_and_briefs.R | 84 pointblank-0.8.0/pointblank/R/sysdata.rda |only pointblank-0.8.0/pointblank/R/table_transformers.R |only pointblank-0.8.0/pointblank/R/tbl_from_db.R | 69 pointblank-0.8.0/pointblank/R/tbl_from_file.R | 8 pointblank-0.8.0/pointblank/R/utils-output.R | 5 pointblank-0.8.0/pointblank/R/utils-profiling.R |only pointblank-0.8.0/pointblank/R/utils-specifications.R |only pointblank-0.8.0/pointblank/R/utils-translations.R |only pointblank-0.8.0/pointblank/R/utils.R | 177 + pointblank-0.8.0/pointblank/R/validate_rmd.R | 18 pointblank-0.8.0/pointblank/R/write_testthat_file.R | 112 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Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-11-09 0.5.4
Title: Missingness Aware Gaussian Mixture Models
Description: Parameter estimation and classification for Gaussian Mixture Models (GMMs) in the presence of missing data. This package complements existing implementations by allowing for both missing elements in the input vectors and full (as opposed to strictly diagonal) covariance matrices. Estimating is performed using an expectation conditional maximization algorithm that accounts for missingness of both the cluster assignments and the vector components. The output includes the marginal cluster membership probabilities; the mean and covariance of each cluster; the posterior probabilities of cluster membership; and a completed version of the input data, with missing values imputed to their posterior expectations. For additional details, please see McCaw ZR, Julienne H, Aschard H. "MGMM: an R package for fitting Gaussian Mixture Models on Incomplete Data." <doi:10.1101/2019.12.20.884551>.
Author: Zachary McCaw [aut, cre] (<https://orcid.org/0000-0002-2006-9828>)
Maintainer: Zachary McCaw <zmccaw@alumni.harvard.edu>
Diff between MGMM versions 0.3.1 dated 2020-08-26 and 0.4.0 dated 2021-07-25
MGMM-0.3.1/MGMM/R/04_Single_MVN.R |only MGMM-0.3.1/MGMM/R/05_Mix_MVN.R |only MGMM-0.3.1/MGMM/R/06_Estimation.R |only MGMM-0.3.1/MGMM/R/07_Clustering.R |only MGMM-0.3.1/MGMM/man/CalHar.within_cluster_disp.Rd |only MGMM-0.3.1/MGMM/man/CalcWorkResp.Rd |only MGMM-0.3.1/MGMM/man/ChooseK.bootstrap.Rd |only MGMM-0.3.1/MGMM/man/ChooseK.iter.Rd |only MGMM-0.3.1/MGMM/man/ChooseK.recommend.Rd |only MGMM-0.3.1/MGMM/man/ChooseK.summarize.Rd |only MGMM-0.3.1/MGMM/man/ClustQual.partition_by_clust.Rd |only MGMM-0.3.1/MGMM/man/DavBou.clust_diameter.Rd |only MGMM-0.3.1/MGMM/man/ExpResidOP.Rd |only MGMM-0.3.1/MGMM/man/MMP.Rd |only MGMM-0.3.1/MGMM/man/Maximization.Rd |only MGMM-0.3.1/MGMM/man/MixClusterAssign.Rd |only MGMM-0.3.1/MGMM/man/MixClusterSizes.Rd |only MGMM-0.3.1/MGMM/man/MixEMObj.Rd |only MGMM-0.3.1/MGMM/man/MixResidOP.Rd |only MGMM-0.3.1/MGMM/man/Responsibility.Rd |only MGMM-0.3.1/MGMM/man/Responsibility.eval_dens_incomp.Rd |only MGMM-0.3.1/MGMM/man/SchurC.Rd |only MGMM-0.3.1/MGMM/man/WorkResp.Rd |only MGMM-0.3.1/MGMM/man/eigSym.Rd |only MGMM-0.3.1/MGMM/man/fit.GMM.Rd |only MGMM-0.3.1/MGMM/man/fit.mix.Rd |only MGMM-0.3.1/MGMM/man/fit.mix.miss.impute.Rd |only MGMM-0.3.1/MGMM/man/fit.mix.miss.init.Rd |only MGMM-0.3.1/MGMM/man/fit.mix.miss.update.Rd |only MGMM-0.3.1/MGMM/man/fit.mix.miss.update.means.Rd |only MGMM-0.3.1/MGMM/man/fit.mvn.Rd |only MGMM-0.3.1/MGMM/man/fit.mvn.miss.Rd |only MGMM-0.3.1/MGMM/man/fit.mvn.miss.impute.Rd |only MGMM-0.3.1/MGMM/man/fit.mvn.miss.init.Rd |only MGMM-0.3.1/MGMM/man/fit.mvn.miss.update.Rd |only MGMM-0.3.1/MGMM/man/fit.mvn.no_miss.Rd |only MGMM-0.3.1/MGMM/man/matCov.Rd |only MGMM-0.3.1/MGMM/man/matDet.Rd |only MGMM-0.3.1/MGMM/man/matIP.Rd |only MGMM-0.3.1/MGMM/man/matInv.Rd |only MGMM-0.3.1/MGMM/man/matOP.Rd |only MGMM-0.3.1/MGMM/man/matQF.Rd |only MGMM-0.3.1/MGMM/man/tr.Rd |only MGMM-0.4.0/MGMM/DESCRIPTION | 17 - MGMM-0.4.0/MGMM/MD5 | 109 ++++------ MGMM-0.4.0/MGMM/NAMESPACE | 20 - MGMM-0.4.0/MGMM/R/00_About.R | 19 + MGMM-0.4.0/MGMM/R/01_Class.R | 166 ++++++++++++++- MGMM-0.4.0/MGMM/R/02_DataGen.R | 75 +++---- MGMM-0.4.0/MGMM/R/03_Expectations.R | 177 ++++++++--------- MGMM-0.4.0/MGMM/R/04_Partition_Data.R |only MGMM-0.4.0/MGMM/R/05_Single_MVN.R |only MGMM-0.4.0/MGMM/R/06_Mix_MVN.R |only MGMM-0.4.0/MGMM/R/07_Estimation.R |only MGMM-0.4.0/MGMM/R/08_Clustering.R |only MGMM-0.4.0/MGMM/R/RcppExports.R | 10 MGMM-0.4.0/MGMM/inst/doc/MGMM.pdf |binary MGMM-0.4.0/MGMM/man/CalHar.Rd | 4 MGMM-0.4.0/MGMM/man/ChooseK.Rd | 14 - MGMM-0.4.0/MGMM/man/ClustQual.Rd | 7 MGMM-0.4.0/MGMM/man/DavBou.Rd | 2 MGMM-0.4.0/MGMM/man/FitGMM.Rd |only MGMM-0.4.0/MGMM/man/FitMVN.Rd |only MGMM-0.4.0/MGMM/man/FitMix.Rd |only MGMM-0.4.0/MGMM/man/MGMM.Rd | 17 + MGMM-0.4.0/MGMM/man/MixUpdateMeans.Rd |only MGMM-0.4.0/MGMM/man/PartitionData.Rd | 6 MGMM-0.4.0/MGMM/man/logLik.mix.Rd |only MGMM-0.4.0/MGMM/man/logLik.mvn.Rd |only MGMM-0.4.0/MGMM/man/mean.mix.Rd |only MGMM-0.4.0/MGMM/man/mean.mvn.Rd |only MGMM-0.4.0/MGMM/man/mix-class.Rd | 17 - MGMM-0.4.0/MGMM/man/mvn-class.Rd |only MGMM-0.4.0/MGMM/man/mvn-method.Rd |only MGMM-0.4.0/MGMM/man/print.mix.Rd | 2 MGMM-0.4.0/MGMM/man/print.mvn.Rd |only MGMM-0.4.0/MGMM/man/rGMM.Rd | 30 +- MGMM-0.4.0/MGMM/man/vcov.mix.Rd |only MGMM-0.4.0/MGMM/man/vcov.mvn.Rd |only MGMM-0.4.0/MGMM/src/Covariance.cpp | 6 MGMM-0.4.0/MGMM/src/MatrixOps.cpp | 8 MGMM-0.4.0/MGMM/src/RcppExports.cpp | 5 MGMM-0.4.0/MGMM/tests |only MGMM-0.4.0/MGMM/vignettes/Vignette.pdf |binary 84 files changed, 436 insertions(+), 275 deletions(-)
Title: Create Tables from Different Types of Regression
Description: Create regression tables from generalized linear model(GLM), generalized estimating equation(GEE), generalized linear mixed-effects model(GLMM), Cox proportional hazards model, survey-weighted generalized linear model(svyglm) and survey-weighted Cox model results for publication.
Author: Jinseob Kim [aut, cre] (<https://orcid.org/0000-0002-9403-605X>),
Zarathu [cph, fnd]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jstable versions 1.0.5 dated 2021-07-20 and 1.0.6 dated 2021-07-25
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 5 ++++- R/svyCreateTableOneJS.R | 6 ++++-- build/vignette.rds |binary inst/doc/jstable.html | 28 ++++++++++++++-------------- man/svyCreateTableOne2.Rd | 3 ++- man/svyCreateTableOneJS.Rd | 3 ++- tests/testthat/test-svyCreateTableOne.R | 18 +++++++++--------- 9 files changed, 47 insertions(+), 40 deletions(-)
Title: API Client for Fantasy Football League Platforms
Description: Helps access various Fantasy Football APIs by handling
authentication and rate-limiting, forming appropriate calls, and
returning tidy dataframes which can be easily connected to other data
sources.
Author: Tan Ho [aut, cre],
Tony ElHabr [ctb],
Joe Sydlowski [ctb]
Maintainer: Tan Ho <tan@tanho.ca>
Diff between ffscrapr versions 1.4.4 dated 2021-07-20 and 1.4.5 dated 2021-07-25
DESCRIPTION | 6 MD5 | 248 ++++++++++++++++---------------- NEWS.md | 12 + R/0_generics.R | 2 R/1_import_dp.R | 9 - R/1_import_nflfastr.R | 8 - R/espn__helpers.R | 6 R/espn_draft.R | 6 R/espn_draftpicks.R | 2 R/espn_franchises.R | 8 - R/espn_league.R | 25 ++- R/espn_players.R | 8 - R/espn_playerscores.R | 8 - R/espn_potentialpoints.R | 7 R/espn_rosters.R | 6 R/espn_schedule.R | 6 R/espn_scoring.R | 6 R/espn_scoringhistory.R | 6 R/espn_standings.R | 6 R/espn_starterpositions.R | 2 R/espn_starters.R | 2 R/flea_draft.R | 6 R/flea_draftpicks.R | 2 R/flea_franchises.R | 2 R/flea_league.R | 2 R/flea_players.R | 2 R/flea_playerscores.R | 7 R/flea_rosters.R | 3 R/flea_schedule.R | 4 R/flea_scoring.R | 2 R/flea_scoringhistory.R | 4 R/flea_standings.R | 2 R/flea_starterpositions.R | 2 R/flea_starters.R | 2 R/flea_transactions.R | 2 R/mfl_draft.R | 6 R/mfl_draftpicks.R | 6 R/mfl_franchises.R | 2 R/mfl_league.R | 2 R/mfl_players.R | 2 R/mfl_playerscores.R | 2 R/mfl_rosters.R | 4 R/mfl_schedule.R | 2 R/mfl_scoring.R | 2 R/mfl_scoringhistory.R | 6 R/mfl_standings.R | 2 R/mfl_starterpositions.R | 2 R/mfl_starters.R | 2 R/mfl_transactions.R | 2 R/sleeper_draft.R | 2 R/sleeper_draftpicks.R | 2 R/sleeper_franchises.R | 2 R/sleeper_league.R | 2 R/sleeper_players.R | 5 R/sleeper_rosters.R | 2 R/sleeper_schedule.R | 2 R/sleeper_scoring.R | 2 R/sleeper_scoringhistory.R | 7 R/sleeper_standings.R | 2 R/sleeper_starterpositions.R | 4 R/sleeper_starters.R | 4 R/sleeper_transactions.R | 4 README.md | 4 inst/doc/espn_authentication.html | 4 inst/doc/espn_basics.R | 6 inst/doc/espn_basics.Rmd | 6 inst/doc/espn_basics.html | 4 inst/doc/espn_getendpoint.R | 6 inst/doc/espn_getendpoint.Rmd | 6 inst/doc/espn_getendpoint.html | 4 inst/doc/ffscrapr_caching.html | 4 inst/doc/ffscrapr_scoringhistory.html | 4 inst/doc/fleaflicker_basics.R | 6 inst/doc/fleaflicker_basics.Rmd | 6 inst/doc/fleaflicker_basics.html | 4 inst/doc/fleaflicker_getendpoint.R | 6 inst/doc/fleaflicker_getendpoint.Rmd | 6 inst/doc/fleaflicker_getendpoint.html | 4 inst/doc/mfl_basics.R | 6 inst/doc/mfl_basics.Rmd | 6 inst/doc/mfl_basics.html | 26 +-- inst/doc/mfl_getendpoint.R | 6 inst/doc/mfl_getendpoint.Rmd | 6 inst/doc/mfl_getendpoint.html | 4 inst/doc/sleeper_basics.R | 6 inst/doc/sleeper_basics.Rmd | 6 inst/doc/sleeper_basics.html | 20 +- inst/doc/sleeper_getendpoint.R | 6 inst/doc/sleeper_getendpoint.Rmd | 6 inst/doc/sleeper_getendpoint.html | 8 - man/dp_clean_html.Rd | 48 +++--- man/dp_cleannames.Rd | 1 man/dp_playerids.Rd | 4 man/dp_values.Rd | 4 man/espn_players.Rd | 8 - man/espn_potentialpoints.Rd | 7 man/ff_connect.Rd | 2 man/ff_draft.Rd | 20 +- man/ff_draftpicks.Rd | 12 + man/ff_franchises.Rd | 14 + man/ff_league.Rd | 14 + man/ff_playerscores.Rd | 17 +- man/ff_rosters.Rd | 15 + man/ff_schedule.Rd | 14 + man/ff_scoring.Rd | 12 + man/ff_scoringhistory.Rd | 23 +- man/ff_standings.Rd | 12 + man/ff_starter_positions.Rd | 10 + man/ff_starters.Rd | 10 + man/ff_transactions.Rd | 8 - man/fleaflicker_players.Rd | 2 man/mfl_players.Rd | 2 man/nflfastr_rosters.Rd | 4 man/nflfastr_weekly.Rd | 4 man/sleeper_players.Rd | 5 tests/testthat/setup.R | 6 tests/testthat/test-ff_scoringhistory.R | 4 vignettes/espn_basics.Rmd | 6 vignettes/espn_getendpoint.Rmd | 6 vignettes/fleaflicker_basics.Rmd | 6 vignettes/fleaflicker_getendpoint.Rmd | 6 vignettes/mfl_basics.Rmd | 6 vignettes/mfl_getendpoint.Rmd | 6 vignettes/sleeper_basics.Rmd | 6 vignettes/sleeper_getendpoint.Rmd | 6 125 files changed, 651 insertions(+), 378 deletions(-)
Title: Capture Hi-C Analysis Engine
Description: Toolkit for processing and calling interactions in capture Hi-C data. Converts BAM files into counts of reads linking restriction fragments, and identifies pairs of fragments that interact more than expected by chance. Significant interactions are identified by comparing the observed read count to the expected background rate from a count regression model.
Author: Erle Holgersen [aut, cre],
Olivia Leavy [aut],
Olivia Fletcher [aut],
Frank Dudbridge [aut],
Syed Haider [aut]
Maintainer: Erle Holgersen <erle.holgersen@gmail.com>
Diff between chicane versions 0.1.5 dated 2021-06-10 and 0.1.6 dated 2021-07-25
chicane-0.1.5/chicane/vignettes/Getting_Started_cache |only chicane-0.1.6/chicane/DESCRIPTION | 8 chicane-0.1.6/chicane/MD5 | 68 chicane-0.1.6/chicane/NEWS | 7 chicane-0.1.6/chicane/R/chicane.R | 12 chicane-0.1.6/chicane/R/combine.replicates.R | 24 chicane-0.1.6/chicane/R/prepare.data.R | 10 chicane-0.1.6/chicane/R/read.bed.R | 5 chicane-0.1.6/chicane/R/test.enrichment.R | 10 chicane-0.1.6/chicane/build/vignette.rds |binary chicane-0.1.6/chicane/inst/doc/Getting_Started.R | 2 chicane-0.1.6/chicane/inst/doc/Getting_Started.Rmd | 39 chicane-0.1.6/chicane/inst/doc/Getting_Started.html | 807 ++++------- chicane-0.1.6/chicane/inst/doc/Visualising_Interactions.html | 550 ++----- chicane-0.1.6/chicane/man/chicane.Rd | 12 chicane-0.1.6/chicane/man/combine.replicates.Rd | 24 chicane-0.1.6/chicane/man/prepare.data.Rd | 10 chicane-0.1.6/chicane/man/test.enrichment.Rd | 10 chicane-0.1.6/chicane/vignettes/Getting_Started.Rmd | 39 19 files changed, 662 insertions(+), 975 deletions(-)
Title: Smooth Effects on Response Penalty for 'CLM'
Description: A regularization method for the cumulative link
models. The 'smooth-effect-on-response penalty' ('SERP') provides
flexible modelling of the ordinal model by enabling the smooth
transition from the general cumulative link model to a coarser form of
the same model. In other words, as the tuning parameter goes from zero
to infinity, the subject-specific effects associated with each
variable in the model tend to a unique global effect. The parameter
estimates of the general cumulative model are mostly unidentifiable or
at least only identifiable within a range of the entire parameter
space. Thus, by maximizing a penalized rather than the usual
non-penalized log-likelihood, this and other numerical problems common
with the general model are to a large extent eliminated. Fitting is
via a modified Newton's method. Several standard model performance and
descriptive methods are also available. For more details on the penalty
implemented here, see, 'Ugba et al. (2021)' <doi:10.3390/stats4030037> and
Tutz and Gertheiss (2016) <doi:10.1177/1471082X16642560>.
Author: Ejike R. Ugba [aut, cre, cph]
Maintainer: Ejike R. Ugba <ejike.ugba@outlook.com>
Diff between serp versions 0.1.8 dated 2021-01-29 and 0.2.0 dated 2021-07-25
DESCRIPTION | 14 LICENSE |only MD5 | 37 +- NEWS.md | 76 +++++ R/serp.R | 23 - R/serp.anova.R | 22 + R/serp.control.R | 31 +- R/serp.fit.R | 84 +++-- R/serp.method.R | 114 +++----- R/serp.misc.R | 112 +++---- R/serp.performance.R | 12 R/serp.vcov.R | 9 README.md | 214 ++++++++++++--- man/figures |only man/serp.Rd | 15 - man/summary.serp.Rd | 7 tests/testthat.R | 1 tests/testthat/test-model-weights.R | 153 ++++++---- tests/testthat/test-penalized-model.R | 454 +++++++++++++++++++++----------- tests/testthat/test-unpenalized-model.R | 167 ++++++----- 20 files changed, 973 insertions(+), 572 deletions(-)
Title: Quick Serialization of R Objects
Description: Provides functions for quickly writing and reading any R object to and from disk.
Author: Travers Ching [aut, cre, cph],
Yann Collet [ctb, cph] (Yann Collet is the author of the bundled zstd,
lz4 and xxHash code),
Facebook, Inc. [cph] (Facebook is the copyright holder of the bundled
zstd code),
Reichardt Tino [ctb, cph] (Contributor/copyright holder of zstd bundled
code),
Skibinski Przemyslaw [ctb, cph] (Contributor/copyright holder of zstd
bundled code),
Mori Yuta [ctb, cph] (Contributor/copyright holder of zstd bundled
code),
Romain Francois [ctb, cph] (Derived example/tutorials for ALTREP
structures),
Francesc Alted [ctb, cph] (Shuffling routines derived from Blosc
library),
Bryce Chamberlain [ctb] (qsavem and qload functions)
Maintainer: Travers Ching <traversc@gmail.com>
Diff between qs versions 0.24.1 dated 2021-03-07 and 0.25.1 dated 2021-07-25
qs-0.24.1/qs/src/expand_binding_value.cpp |only qs-0.24.1/qs/src/expand_binding_value.h |only qs-0.25.1/qs/ChangeLog | 13 ++++ qs-0.25.1/qs/DESCRIPTION | 20 ++----- qs-0.25.1/qs/MD5 | 44 ++++++++-------- qs-0.25.1/qs/NAMESPACE | 3 - qs-0.25.1/qs/R/RcppExports.R | 8 --- qs-0.25.1/qs/R/qcache.R |only qs-0.25.1/qs/R/zzz.R | 2 qs-0.25.1/qs/README.md | 4 + qs-0.25.1/qs/build/vignette.rds |binary qs-0.25.1/qs/data/starnames.rda |binary qs-0.25.1/qs/inst/doc/vignette.html | 16 ++++-- qs-0.25.1/qs/inst/doc/vignette.rmd | 8 ++- qs-0.25.1/qs/inst/include/qs_RcppExports.h | 39 -------------- qs-0.25.1/qs/man/qcache.Rd |only qs-0.25.1/qs/src/Makevars.in | 11 +--- qs-0.25.1/qs/src/Makevars.win | 9 +-- qs-0.25.1/qs/src/RcppExports.cpp | 76 +---------------------------- qs-0.25.1/qs/src/extra_functions.h | 10 --- qs-0.25.1/qs/src/qs_common.h | 2 qs-0.25.1/qs/src/qs_deserialize_common.h | 15 ++++- qs-0.25.1/qs/src/qs_functions.cpp | 10 +++ qs-0.25.1/qs/src/qs_serialize_common.h | 57 ++++++++++++++++++++- qs-0.25.1/qs/vignettes/vignette.rmd | 8 ++- 25 files changed, 159 insertions(+), 196 deletions(-)
Title: Bayesian Meta-Analysis via 'Stan'
Description: Performs Bayesian meta-analysis and model-based meta-analysis using 'Stan'.
Includes binomial-normal hierarchical models and option to use weakly informative priors for the
heterogeneity parameter and the treatment effect parameter which are described in
Guenhan, Roever, and Friede (2020) <doi:10.1002/jrsm.1370>.
Author: Burak Kuersad Guenhan [aut, cre]
(<https://orcid.org/0000-0002-7454-8680>),
Trustees of Columbia University [cph] (src/init.cpp, tools/make_cpp.R,
R/stanmodels.R)
Maintainer: Burak Kuersad Guenhan <burakgunhan@gmail.com>
Diff between MetaStan versions 0.2.0 dated 2020-04-09 and 0.4.0 dated 2021-07-25
MetaStan-0.2.0/MetaStan/README.md |only MetaStan-0.4.0/MetaStan/DESCRIPTION | 14 MetaStan-0.4.0/MetaStan/MD5 | 7 MetaStan-0.4.0/MetaStan/build/vignette.rds |binary MetaStan-0.4.0/MetaStan/inst/doc/MetaStan_BNHM.html | 686 +++++++++++--------- 5 files changed, 415 insertions(+), 292 deletions(-)
Title: Plot Heatmap
Description: The flexibility and excellence of 'ggplot2' is unquestionable,
so many drawing tools basically need 'ggplot2' as the operating object.
In order to develop a heatmap drawing system based on ggplot2, we developed
this tool, mainly to solve the heatmap puzzle problem and the flexible
connection between the heatmap and the 'ggplot2' object.
The advantages of this tool are as follows:
1. More flexible label settings;
2. Realize the linkage of heatmap and 'ggplot2' drawing system,
which is helpful for operations such as puzzles;
3. Simple and easy to operate;
4. Optimization of clustering tree visualization.
Author: Baiwei Luo [aut, cre]
Maintainer: Baiwei Luo <2734782653@qq.com>
Diff between ggheatmap versions 2.0 dated 2021-07-12 and 2.1 dated 2021-07-25
DESCRIPTION | 6 MD5 | 6 R/ggheatmap.R | 825 ++++++++++++++++++++++++++++--------------------------- man/ggheatmap.Rd | 34 ++ 4 files changed, 472 insertions(+), 399 deletions(-)
Title: Cross-Validated Covariance Matrix Estimation
Description: An efficient cross-validated approach for covariance matrix
estimation, particularly useful in high-dimensional settings. This
method relies upon the theory of loss-based estimator selection to
identify the optimal estimator of the covariance matrix from among a
prespecified set of candidates.
Author: Philippe Boileau [aut, cre, cph]
(<https://orcid.org/0000-0002-4850-2507>),
Nima Hejazi [aut] (<https://orcid.org/0000-0002-7127-2789>),
Brian Collica [aut] (<https://orcid.org/0000-0003-1127-2557>),
Jamarcus Liu [ctb],
Mark van der Laan [ctb, ths] (<https://orcid.org/0000-0003-1432-5511>),
Sandrine Dudoit [ctb, ths] (<https://orcid.org/0000-0002-6069-8629>)
Maintainer: Philippe Boileau <philippe_boileau@berkeley.edu>
Diff between cvCovEst versions 0.3.5 dated 2021-04-18 and 1.0.0 dated 2021-07-25
cvCovEst-0.3.5/cvCovEst/R/plotFunctions.R |only cvCovEst-0.3.5/cvCovEst/man/trueFrobeniusLoss.Rd |only cvCovEst-1.0.0/cvCovEst/DESCRIPTION | 12 cvCovEst-1.0.0/cvCovEst/MD5 | 56 - cvCovEst-1.0.0/cvCovEst/NAMESPACE | 1 cvCovEst-1.0.0/cvCovEst/NEWS.md | 34 cvCovEst-1.0.0/cvCovEst/R/checkArgs.R | 28 cvCovEst-1.0.0/cvCovEst/R/cvCovEst.R | 205 +---- cvCovEst-1.0.0/cvCovEst/R/estimator_plots.R | 12 cvCovEst-1.0.0/cvCovEst/R/foldFunctions.R | 149 +--- cvCovEst-1.0.0/cvCovEst/R/plot_functions.R | 16 cvCovEst-1.0.0/cvCovEst/R/summary_functions.R | 42 - cvCovEst-1.0.0/cvCovEst/README.md | 23 cvCovEst-1.0.0/cvCovEst/build/partial.rdb |binary cvCovEst-1.0.0/cvCovEst/build/vignette.rds |binary cvCovEst-1.0.0/cvCovEst/inst/REFERENCES.bib | 6 cvCovEst-1.0.0/cvCovEst/inst/doc/using_cvCovEst.R | 18 cvCovEst-1.0.0/cvCovEst/inst/doc/using_cvCovEst.Rmd | 31 cvCovEst-1.0.0/cvCovEst/inst/doc/using_cvCovEst.html | 377 ++--------- cvCovEst-1.0.0/cvCovEst/man/checkArgs.Rd | 11 cvCovEst-1.0.0/cvCovEst/man/cvCovEst.Rd | 25 cvCovEst-1.0.0/cvCovEst/man/cvFrobeniusLoss.Rd | 15 cvCovEst-1.0.0/cvCovEst/man/cvMatrixFrobeniusLoss.Rd | 10 cvCovEst-1.0.0/cvCovEst/man/cvScaledMatrixFrobeniusLoss.Rd | 10 cvCovEst-1.0.0/cvCovEst/man/plot.cvCovEst.Rd | 2 cvCovEst-1.0.0/cvCovEst/tests/testthat/test-checkArgs.R | 42 - cvCovEst-1.0.0/cvCovEst/tests/testthat/test-cvCovEst.R | 156 ---- cvCovEst-1.0.0/cvCovEst/tests/testthat/test-foldFunctions.R | 90 ++ cvCovEst-1.0.0/cvCovEst/tests/testthat/test-plot-functions.R | 9 cvCovEst-1.0.0/cvCovEst/vignettes/using_cvCovEst.Rmd | 31 30 files changed, 420 insertions(+), 991 deletions(-)
Title: Retrieve and Analyze Clinical Trials in Public Registers
Description: Provides functions for querying, retrieving and analyzing
protocol- and results-related information on clinical trials from
two public registers, the 'European Union Clinical Trials Register'
('EUCTR', <https://www.clinicaltrialsregister.eu/>),
'ClinicalTrials.gov' ('CTGOV', <https://clinicaltrials.gov/>) and
the 'ISRCTN' (<http://www.isrctn.com/>).
Trial information is downloaded, converted and stored in a database
('SQLite' or 'MongoDB', via 'nodbi').
Functions are provided to identify de-duplicated records,
to easily find and extract variables (fields) of interest even
from complex nesting as used by the registers, and
to update previous queries that users retrieved in a database.
The package can be used for meta analysis and trend-analysis of
the design and conduct as well as results of clinical trials.
Author: Ralf Herold [aut, cre] (<https://orcid.org/0000-0002-8148-6748>)
Maintainer: Ralf Herold <ralf.herold@mailbox.org>
Diff between ctrdata versions 1.6.0 dated 2021-05-09 and 1.7.0 dated 2021-07-25
ctrdata-1.6.0/ctrdata/man/addMetaData.Rd |only ctrdata-1.6.0/ctrdata/man/checkBinary.Rd |only ctrdata-1.6.0/ctrdata/man/ctrConvertToJSON.Rd |only ctrdata-1.6.0/ctrdata/man/ctrLoadQueryIntoDbCtgov.Rd |only ctrdata-1.6.0/ctrdata/man/ctrLoadQueryIntoDbEuctr.Rd |only ctrdata-1.6.0/ctrdata/man/ctrLoadQueryIntoDbIsrctn.Rd |only ctrdata-1.6.0/ctrdata/man/ctrRerunQuery.Rd |only ctrdata-1.6.0/ctrdata/man/dbCTRAnnotateQueryRecords.Rd |only ctrdata-1.6.0/ctrdata/man/dbCTRLoadJSONFiles.Rd |only ctrdata-1.6.0/ctrdata/man/dbCTRUpdateQueryHistory.Rd |only ctrdata-1.6.0/ctrdata/man/installCygwinWindowsTest.Rd |only ctrdata-1.6.0/ctrdata/man/installFindBinary.Rd |only ctrdata-1.6.0/ctrdata/man/setProxy.Rd |only ctrdata-1.6.0/ctrdata/man/typeField.Rd |only ctrdata-1.7.0/ctrdata/DESCRIPTION | 12 ctrdata-1.7.0/ctrdata/MD5 | 48 - ctrdata-1.7.0/ctrdata/NAMESPACE | 2 ctrdata-1.7.0/ctrdata/NEWS.md | 8 ctrdata-1.7.0/ctrdata/R/main.R | 246 ++++---- ctrdata-1.7.0/ctrdata/R/utils.R | 277 ++-------- ctrdata-1.7.0/ctrdata/README.md | 58 +- ctrdata-1.7.0/ctrdata/build/vignette.rds |binary ctrdata-1.7.0/ctrdata/inst/doc/ctrdata_analyse.pdf |binary ctrdata-1.7.0/ctrdata/inst/doc/ctrdata_install.pdf |binary ctrdata-1.7.0/ctrdata/inst/doc/ctrdata_retrieve.pdf |binary ctrdata-1.7.0/ctrdata/inst/image/README-ctrdata_results_neuroblastoma.png |binary ctrdata-1.7.0/ctrdata/inst/tinytest/ctrdata_ctgov.R | 23 ctrdata-1.7.0/ctrdata/inst/tinytest/ctrdata_euctr.R | 98 ++- ctrdata-1.7.0/ctrdata/inst/tinytest/ctrdata_isrctn.R | 48 + ctrdata-1.7.0/ctrdata/inst/tinytest/setup_ctrdata.R | 22 ctrdata-1.7.0/ctrdata/inst/tinytest/test_ctrdata_other_functions.R | 44 + ctrdata-1.7.0/ctrdata/inst/tinytest/test_ctrdata_param_checks.R | 72 +- 32 files changed, 497 insertions(+), 461 deletions(-)
Title: Visualizing Classification Results
Description: Tools to visualize the results of a classification of cases.
The graphical displays include stacked plots, silhouette plots, quasi residual plots, and class maps.
Implements the techniques described and illustrated in Raymaekers, Rousseeuw and Hubert (2021),
Class maps for visualizing classification results, Technometrics, appeared online.
<doi:10.1080/00401706.2021.1927849> (open access) and Raymaekers and Rousseeuw (2021),
Silhouettes and quasi residual plots for neural nets and tree-based classifiers,
<arXiv:2106.08814>. Examples can be found in the vignettes: "Discriminant_analysis_examples","K_nearest_neighbors_examples",
"Support_vector_machine_examples", "Rpart_examples", "Random_forest_examples",
and "Neural_net_examples".
Author: Jakob Raymaekers [aut, cre],
Peter Rousseeuw [aut]
Maintainer: Jakob Raymaekers <jakob.raymaekers@kuleuven.be>
Diff between classmap versions 1.1.0 dated 2021-06-27 and 1.1.1 dated 2021-07-25
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- build/partial.rdb |binary inst/doc/Discriminant_analysis_examples.R | 20 ++++++++++++-------- inst/doc/Discriminant_analysis_examples.Rmd | 20 ++++++++++++-------- inst/doc/Discriminant_analysis_examples.html | 21 ++++++++++++--------- inst/doc/Support_vector_machine_examples.html | 4 ++-- vignettes/Discriminant_analysis_examples.Rmd | 20 ++++++++++++-------- 8 files changed, 61 insertions(+), 46 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-05-27 0.3.8
Title: Kullback-Leibler Divergence and Other Tools to Analyze
Frequencies
Description: Most importantly, calculates Kullback-Leibler Divergence (KLD), Turing's perspective estimator
and their confidence intervals.
Author: Alexey Shipunov [cre],
Kateryna Krykoniuk [aut],
Jasjeet Sekhon [ctb]
Maintainer: Alexey Shipunov <dactylorhiza@gmail.com>
Diff between kldtools versions 1.0 dated 2021-07-13 and 1.1 dated 2021-07-25
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS | 3 +++ R/kldtools.r | 8 +++++--- TODO | 1 - man/kldtools.Rd | 56 +++++++++++++++++++++++++++++++++++--------------------- 6 files changed, 52 insertions(+), 34 deletions(-)
Title: Methods for the Indirect Estimation of Bilateral Migration
Description: Indirect methods for estimating bilateral migration flows in the presence of partial or missing data, including the estimation of bilateral migration flows from changes in bilateral migrant stock tables (e.g. Abel (2013) <doi:10.4054/DemRes.2013.28.18>).
Author: Guy J. Abel [aut, cre] (<https://orcid.org/0000-0002-4893-5687>)
Maintainer: Guy J. Abel <g.j.abel@gmail.com>
Diff between migest versions 1.8.5 dated 2021-05-17 and 2.0.0 dated 2021-07-25
migest-1.8.5/migest/R/net_from_lifetime.R |only migest-1.8.5/migest/R/net_stream.R |only migest-1.8.5/migest/R/rc9.R |only migest-1.8.5/migest/R/rc9.fund.R |only migest-1.8.5/migest/data/rc9.fund.rda |only migest-1.8.5/migest/man/net_from_lifetime.Rd |only migest-1.8.5/migest/man/net_stream.Rd |only migest-1.8.5/migest/man/rc9.Rd |only migest-1.8.5/migest/man/rc9.fund.Rd |only migest-2.0.0/migest/DESCRIPTION | 10 - migest-2.0.0/migest/MD5 | 119 ++++++++++++----- migest-2.0.0/migest/NAMESPACE | 21 +-- migest-2.0.0/migest/R/alabama_1970.R |only migest-2.0.0/migest/R/birth_mat.R | 1 migest-2.0.0/migest/R/bombay_1951.R |only migest-2.0.0/migest/R/counter.R |only migest-2.0.0/migest/R/death_mat.R | 3 migest-2.0.0/migest/R/format_migration_matrix.R |only migest-2.0.0/migest/R/format_migration_tibble.R |only migest-2.0.0/migest/R/global.R | 2 migest-2.0.0/migest/R/index_age.R |only migest-2.0.0/migest/R/index_age_rc.R |only migest-2.0.0/migest/R/index_connectivity.R |only migest-2.0.0/migest/R/index_distance.R |only migest-2.0.0/migest/R/index_impact.R |only migest-2.0.0/migest/R/index_intensity.R |only migest-2.0.0/migest/R/indian_sub.R |only migest-2.0.0/migest/R/ipf3_qi.R | 34 ++-- migest-2.0.0/migest/R/ipf_seed.R | 9 - migest-2.0.0/migest/R/ipumsi_age.R |only migest-2.0.0/migest/R/italy_area.R |only migest-2.0.0/migest/R/korea_dist.R |only migest-2.0.0/migest/R/korea_pop.R |only migest-2.0.0/migest/R/korea_reg.R |only migest-2.0.0/migest/R/manila_1970.R |only migest-2.0.0/migest/R/match_pob_tot.R | 2 migest-2.0.0/migest/R/multi_comp.R | 65 ++++++++- migest-2.0.0/migest/R/multi_comp2.R | 2 migest-2.0.0/migest/R/net_sr.R |only migest-2.0.0/migest/R/net_vs.R |only migest-2.0.0/migest/R/new_england_1960.R |only migest-2.0.0/migest/R/rc_model_fund.R |only migest-2.0.0/migest/R/rc_model_un.R |only migest-2.0.0/migest/R/rescale_nb.R | 13 + migest-2.0.0/migest/R/sum_expand.R |only migest-2.0.0/migest/R/sum_lump.R |only migest-2.0.0/migest/R/sum_turnover.R | 58 ++++---- migest-2.0.0/migest/R/uar_1960.R |only migest-2.0.0/migest/R/usa_1960.R |only migest-2.0.0/migest/R/utils-pipe.R |only migest-2.0.0/migest/data/alabama_1970.rda |only migest-2.0.0/migest/data/bombay_1951.rda |only migest-2.0.0/migest/data/indian_sub.rda |only migest-2.0.0/migest/data/ipumsi_age.rda |only migest-2.0.0/migest/data/italy_area.rda |only migest-2.0.0/migest/data/korea_dist.rda |only migest-2.0.0/migest/data/korea_pop.rda |only migest-2.0.0/migest/data/korea_reg.rda |only migest-2.0.0/migest/data/manila_1970.rda |only migest-2.0.0/migest/data/new_england_1960.rda |only migest-2.0.0/migest/data/rc_model_fund.rda |only migest-2.0.0/migest/data/rc_model_un.rda |only migest-2.0.0/migest/data/uar_1960.rda |only migest-2.0.0/migest/data/usa_1960.rda |only migest-2.0.0/migest/man/alabama_1970.Rd |only migest-2.0.0/migest/man/bombay_1951.Rd |only migest-2.0.0/migest/man/cm_net_tot.Rd | 146 ++++++++++----------- migest-2.0.0/migest/man/counter.Rd |only migest-2.0.0/migest/man/death_mat.Rd | 2 migest-2.0.0/migest/man/format_migration_matrix.Rd |only migest-2.0.0/migest/man/format_migration_tibble.Rd |only migest-2.0.0/migest/man/index_age.Rd |only migest-2.0.0/migest/man/index_age_rc.Rd |only migest-2.0.0/migest/man/index_connectivity.Rd |only migest-2.0.0/migest/man/index_distance.Rd |only migest-2.0.0/migest/man/index_impact.Rd |only migest-2.0.0/migest/man/index_intensity.Rd |only migest-2.0.0/migest/man/indian_sub.Rd |only migest-2.0.0/migest/man/ipf3_qi.Rd | 26 ++- migest-2.0.0/migest/man/ipf_seed.Rd | 8 - migest-2.0.0/migest/man/ipumsi_age.Rd |only migest-2.0.0/migest/man/italy_area.Rd |only migest-2.0.0/migest/man/korea_dist.Rd |only migest-2.0.0/migest/man/korea_pop.Rd |only migest-2.0.0/migest/man/korea_reg.Rd |only migest-2.0.0/migest/man/manila_1970.Rd |only migest-2.0.0/migest/man/multi_comp.Rd | 10 + migest-2.0.0/migest/man/multi_comp2.Rd | 1 migest-2.0.0/migest/man/net_sr.Rd |only migest-2.0.0/migest/man/net_vs.Rd |only migest-2.0.0/migest/man/new_england_1960.Rd |only migest-2.0.0/migest/man/pipe.Rd |only migest-2.0.0/migest/man/rc_model_fund.Rd |only migest-2.0.0/migest/man/rc_model_un.Rd |only migest-2.0.0/migest/man/rescale_nb.Rd | 12 + migest-2.0.0/migest/man/sum_expand.Rd |only migest-2.0.0/migest/man/sum_lump.Rd |only migest-2.0.0/migest/man/sum_turnover.Rd | 17 +- migest-2.0.0/migest/man/uar_1960.Rd |only migest-2.0.0/migest/man/usa_1960.Rd |only 100 files changed, 355 insertions(+), 206 deletions(-)
Title: Judd, McClelland, & Ryan Formatting for ANOVA Output
Description: Produces ANOVA tables in the format used by Judd, McClelland, and Ryan
(2017, ISBN: 978-1138819832) in their introductory textbook, Data Analysis. This includes
proportional reduction in error and formatting to improve ease the transition between the book
and R.
Author: Adam Blake [aut] (<https://orcid.org/0000-0001-7881-8652>),
Jeff Chrabaszcz [aut],
Ji Son [aut] (<https://orcid.org/0000-0002-4258-4791>),
Jim Stigler [cre, aut] (<https://orcid.org/0000-0001-6107-7827>)
Maintainer: Jim Stigler <jstigler@gmail.com>
Diff between supernova versions 2.4.1 dated 2021-05-29 and 2.4.2 dated 2021-07-25
DESCRIPTION | 10 +++++----- MD5 | 12 +++++++++--- NEWS.md | 5 +++++ tests/testthat/_snaps/pairwise |only tests/testthat/test-supernova.r | 2 +- 5 files changed, 20 insertions(+), 9 deletions(-)
Title: Easily Apply Formats to Data
Description: Contains a set of functions that can be used to apply
formats to data frames or vectors. The package aims to provide to
functionality similar to that of SAS® formats. Formats are assigned to
the format attribute on data frame columns. Then when the fdata()
function is called, a new data frame is created with the column data
formatted as specified. The package also contains a value() function
to create a user-defined format, similar to a SAS® user-defined format.
Author: David Bosak
Maintainer: David Bosak <dbosak01@gmail.com>
Diff between fmtr versions 1.5.1 dated 2021-06-21 and 1.5.2 dated 2021-07-25
DESCRIPTION | 6 ++-- MD5 | 54 ++++++++++++++++++++--------------------- NEWS.md | 7 +++++ R/fapply.R | 22 ++++++++++++---- R/fcat.R | 10 +++---- R/fdata.R | 4 +-- R/flist.R | 10 +++---- R/fmt.R | 7 +++-- build/vignette.rds |binary inst/doc/fmtr-convenience.Rmd | 9 ++++-- inst/doc/fmtr-convenience.html | 8 +++--- inst/doc/fmtr-fapply.html | 4 +-- inst/doc/fmtr-fcat.R | 11 ++++++++ inst/doc/fmtr-fcat.Rmd | 13 +++++++++ inst/doc/fmtr-fcat.html | 35 +++++++++++++++++--------- inst/doc/fmtr-fdata.html | 4 +-- inst/doc/fmtr-helpers.html | 4 +-- inst/doc/fmtr.Rmd | 2 - inst/doc/fmtr.html | 2 - man/as.fcat.tbl_df.Rd | 2 - man/fdata.Rd | 2 - src/code.cpp | 3 -- tests/testthat/test-fapply.R | 45 ++++++++++++++++++++++++++++++++++ tests/testthat/test-fdata.R | 26 +++++++++++++++++++ tests/testthat/test-fmt.R | 16 ++++++++++++ vignettes/fmtr-convenience.Rmd | 9 ++++-- vignettes/fmtr-fcat.Rmd | 13 +++++++++ vignettes/fmtr.Rmd | 2 - 28 files changed, 241 insertions(+), 89 deletions(-)
Title: Data Sets for Psychometric Modeling
Description: Collection of data sets from various assessments that can be used to
evaluate psychometric models. These data sets have been analyzed in the
following papers that introduced new methodology as part of the application section:
Yinghan Chen et al. (2021) <doi:10.1007/s11336-021-09750-9>,
Yinyin Chen et al. (2020) <doi:10.1007/s11336-019-09693-2>,
Culpepper, S. A. (2019a) <doi:10.1007/s11336-019-09683-4>,
Culpepper, S. A. (2019b) <doi:10.1007/s11336-018-9643-8>,
Culpepper, S. A., & Chen, Y. (2019) <doi:10.3102/1076998618791306>,
Culpepper, S. A., & Balamuta, J. J. (2017) <doi:10.1007/s11336-015-9484-7>,
and Culpepper, S. A. (2015) <doi:10.3102/1076998615595403>.
Author: James Joseph Balamuta [aut, cre, cph]
(<https://orcid.org/0000-0003-2826-8458>),
Steven Andrew Culpepper [aut, cph]
(<https://orcid.org/0000-0003-4226-6176>),
Jeffrey Alan Douglas [aut, cph]
Maintainer: James Joseph Balamuta <balamut2@illinois.edu>
Diff between edmdata versions 1.1.0 dated 2021-01-14 and 1.2.0 dated 2021-07-25
.aspell |only DESCRIPTION | 9 - MD5 | 34 ++++-- NEWS.md | 29 +++++ R/ecpe-data.R | 2 R/probability-data.R |only R/strategy-oracle-data.R |only README.md | 188 +++++++++++++++++++++------------- build/partial.rdb |binary data/items_probability_part_one.rda |only data/qmatrix_probability_part_one.rda |only data/strategy_oracle_k3_j20_s2.rda |only data/strategy_oracle_k3_j30_s2.rda |only data/strategy_oracle_k3_j40_s2.rda |only data/strategy_oracle_k3_j50_s2.rda |only data/strategy_oracle_k4_j20_s2.rda |only data/strategy_oracle_k4_j30_s2.rda |only data/strategy_oracle_k4_j40_s2.rda |only data/strategy_oracle_k4_j50_s2.rda |only inst/WORDLIST |only man/edmdata-package.Rd | 3 man/items_ecpe.Rd | 24 +--- man/items_fractions.Rd | 3 man/items_probability_part_one.Rd |only man/qmatrix_fractions.Rd | 3 man/qmatrix_probability_part_one.Rd |only man/strategy_oracle.Rd |only 27 files changed, 192 insertions(+), 103 deletions(-)
Title: Tools for Managing SSH and Git Credentials
Description: Setup and retrieve HTTPS and SSH credentials for use with 'git' and
other services. For HTTPS remotes the package interfaces the 'git-credential'
utility which 'git' uses to store HTTP usernames and passwords. For SSH
remotes we provide convenient functions to find or generate appropriate SSH
keys. The package both helps the user to setup a local git installation, and
also provides a back-end for git/ssh client libraries to authenticate with
existing user credentials.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between credentials versions 1.3.0 dated 2020-07-21 and 1.3.1 dated 2021-07-25
DESCRIPTION | 8 - MD5 | 12 +- NEWS | 3 R/onattach.R | 8 + R/ssh-keys.R | 1 build/vignette.rds |binary inst/doc/intro.html | 252 ++++++---------------------------------------------- 7 files changed, 51 insertions(+), 233 deletions(-)